HHsearch alignment for GI: peg_472 and conserved domain: PRK12723
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional.
Probab=96.77 E-value=0.0087 Score=40.67 Aligned_cols=115 Identities=17% Similarity=0.290 Sum_probs=58.8
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHHH--CCCCCC--CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHH----
Q ss_conf 7062010787988889999999996--146877--78866587899977999977987782224533223345556----
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARSL--NYKTAH--IDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVR---- 92 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~l--~c~~~~--~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir---- 92 (369)
T Consensus 174 ~~vi~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit------------------~DtyRig-----AveQLktya~ 230 (388)
T PRK12723 174 KRIFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIIT------------------IDNYRIG-----AKKQIQTYGD 230 (388)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE------------------ECCCCHH-----HHHHHHHHHH
T ss_conf 6289998998875787999999999986267677379998------------------0787588-----9999999999
Q ss_pred -------------HHHHHHHHHHHCCCCCEEEEECHHHCCCCHH--HHHHHHHHHC-C-CCCCEEEEECCCCCCCHHHHH
Q ss_conf -------------6555445654204652377511566480016--7899999721-2-211146650675433035675
Q 537021.9.peg.4 93 -------------EIIDQIYYKPISARFRVYIMDEVQMLSTAAF--NGLLKTLEEP-P-PHVKFIFATTEIRKIPITVLS 155 (369)
Q Consensus 93 -------------~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~--NaLLK~lEEP-p-~~~~fil~t~~~~~ll~TI~S 155 (369)
T Consensus 231 il~vp~~v~~~~~dl~~~l~---~~~~~D~IlIDTAGrs~~d~~~~~el~~~~~~~~~~~~~~Lvlsat~~~~d~~~i~~ 307 (388)
T PRK12723 231 IMGIPVKAIESFKDLKEEIT---QSKDFDLVLIDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDIKEIFH 307 (388)
T ss_pred HHCCCEEEECCHHHHHHHHH---HHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 97880698578899999999---724999999958998856899999999999741898459999879899999999999
Q ss_pred HHHHHH
Q ss_conf 433321
Q 537021.9.peg.4 156 RCQRFD 161 (369)
Q Consensus 156 Rcq~~~ 161 (369)
T Consensus 308 ~f~~~~ 313 (388)
T PRK12723 308 QFSPFS 313 (388)
T ss_pred HHCCCC
T ss_conf 842799