HHsearch alignment for GI: peg_472 and conserved domain: PRK12724

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.18  E-value=0.0016  Score=46.02  Aligned_cols=121  Identities=16%  Similarity=0.241  Sum_probs=67.1

Q ss_pred             EEHHCCCCCCCHHHHHHHHH-HHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC---------CC---CHH
Q ss_conf             62010787988889999999-996146877788665878999779999779877822245332---------23---345
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIA-RSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAAS---------HT---SID   89 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A-~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s---------~~---~id   89 (369)
T Consensus       225 vi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT------------------~DTYRIgAvEQLktYa~Il~iPv~vv~  286 (432)
T PRK12724        225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYT------------------TDNYRIAAIEQLKRYADTMGMPFYPVK  286 (432)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEE------------------CCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             99998999988899999999999997499279995------------------266537799999999998599459951


Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHH-----HHHHHHH-HHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf             5566555445654204652377511566480016-----7899999-721221114665067543303567543332102
Q 537021.9.peg.4   90 DVREIIDQIYYKPISARFRVYIMDEVQMLSTAAF-----NGLLKTL-EEPPPHVKFIFATTEIRKIPITVLSRCQRFDLH  163 (369)
Q Consensus        90 ~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~-----NaLLK~l-EEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f~  163 (369)
T Consensus       287 ~~~el~~al~----~~~~DlILIDTAGrS~rd~~~~~eL~~ll~~~~~~~~ie~~LVLSaTtk~~dl~~ii~~f~~l~~~  362 (432)
T PRK12724        287 DIKKFKETLA----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYR  362 (432)
T ss_pred             CHHHHHHHHH----HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCC
T ss_conf             8999999998----569999999299989789999999999998636678851799997889989999999984269998


Q ss_pred             CC
Q ss_conf             45
Q 537021.9.peg.4  164 RI  165 (369)
Q Consensus       164 ~l  165 (369)
T Consensus       363 ~l  364 (432)
T PRK12724        363 RI  364 (432)
T ss_pred             EE
T ss_conf             49