HHsearch alignment for GI: peg_472 and conserved domain: PRK12724
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.18 E-value=0.0016 Score=46.02 Aligned_cols=121 Identities=16% Similarity=0.241 Sum_probs=67.1
Q ss_pred EEHHCCCCCCCHHHHHHHHH-HHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC---------CC---CHH
Q ss_conf 62010787988889999999-996146877788665878999779999779877822245332---------23---345
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIA-RSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAAS---------HT---SID 89 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A-~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s---------~~---~id 89 (369)
T Consensus 225 vi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT------------------~DTYRIgAvEQLktYa~Il~iPv~vv~ 286 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYT------------------TDNYRIAAIEQLKRYADTMGMPFYPVK 286 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEE------------------CCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 99998999988899999999999997499279995------------------266537799999999998599459951
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHH-----HHHHHHH-HHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 5566555445654204652377511566480016-----7899999-721221114665067543303567543332102
Q 537021.9.peg.4 90 DVREIIDQIYYKPISARFRVYIMDEVQMLSTAAF-----NGLLKTL-EEPPPHVKFIFATTEIRKIPITVLSRCQRFDLH 163 (369)
Q Consensus 90 ~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~-----NaLLK~l-EEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f~ 163 (369)
T Consensus 287 ~~~el~~al~----~~~~DlILIDTAGrS~rd~~~~~eL~~ll~~~~~~~~ie~~LVLSaTtk~~dl~~ii~~f~~l~~~ 362 (432)
T PRK12724 287 DIKKFKETLA----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYR 362 (432)
T ss_pred CHHHHHHHHH----HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCC
T ss_conf 8999999998----569999999299989789999999999998636678851799997889989999999984269998
Q ss_pred CC
Q ss_conf 45
Q 537021.9.peg.4 164 RI 165 (369)
Q Consensus 164 ~l 165 (369)
T Consensus 363 ~l 364 (432)
T PRK12724 363 RI 364 (432)
T ss_pred EE
T ss_conf 49