HHsearch alignment for GI: peg_472 and conserved domain: TIGR00382
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=98.38 E-value=6.3e-07 Score=71.21 Aligned_cols=111 Identities=30% Similarity=0.436 Sum_probs=70.8
Q ss_pred CCCHHHHHHHHHHHH----------HCC-C-----------------C--CEEEHHCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 928489999999999----------828-7-----------------6--706201078798888999999999614687
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAF----------KSG-R-----------------I--AQSYMLSGTRGIGKTTTARIIARSLNYKTA 50 (369)
Q Consensus 1 iiGq~~~~~~l~~~~----------~~~-~-----------------~--~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~ 50 (369)
T Consensus 103 VIGQe~AKKVLsVAVYNHYKRl~~~~~n~~~d~~D~nvelehleeVEL~KSN-ILLiGPTGSGKTLLAqTLA~~L~VPfA 181 (452)
T TIGR00382 103 VIGQEQAKKVLSVAVYNHYKRLNLKEKNKKSDNGDSNVELEHLEEVELSKSN-ILLIGPTGSGKTLLAQTLARILNVPFA 181 (452)
T ss_pred CCCCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 1231010525432411246665324304555884000235444443330066-245468885268999999987388742
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH----HHHHHHHHHHCCCCCEEEEECHHHCC-------
Q ss_conf 7788665878999779999779877822245332233455566----55544565420465237751156648-------
Q 537021.9.peg.4 51 HIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVRE----IIDQIYYKPISARFRVYIMDEVQMLS------- 119 (369)
Q Consensus 51 ~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~----l~~~~~~~p~~~~~kv~iid~a~~m~------- 119 (369)
T Consensus 182 iADATtLT-----------E------------AGYVG-EDVENIL~~Llq~ad~DV~kA~kGIiYIDEIDKIaRkSEN~S 237 (452)
T TIGR00382 182 IADATTLT-----------E------------AGYVG-EDVENILLKLLQAADYDVEKAQKGIIYIDEIDKIARKSENPS 237 (452)
T ss_pred ECCHHHHH-----------C------------CCCCC-CCHHHHHHHHHHHCCCCHHHHCCCEEEEECCCCHHHHCCCCE
T ss_conf 11111020-----------0------------66424-228899999987414552452785089842231012157780
Q ss_pred -------CCHHHHHHHHHHH-----CCCC
Q ss_conf -------0016789999972-----1221
Q 537021.9.peg.4 120 -------TAAFNGLLKTLEE-----PPPH 136 (369)
Q Consensus 120 -------~~a~NaLLK~lEE-----Pp~~ 136 (369)
T Consensus 238 ITRDVSGEGVQQALLKi~EGTvA~vPPqG 266 (452)
T TIGR00382 238 ITRDVSGEGVQQALLKIIEGTVANVPPQG 266 (452)
T ss_pred EEEEECCCHHHHHHHHHHHCCEEEECCCC
T ss_conf 11221755499999987603234317544