HHsearch alignment for GI: peg_472 and conserved domain: TIGR00929
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family; InterPro: IPR004346 This family includes the Helicobacter pylori protein CagE (see examples), which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration . Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro . Similar type IV transport systems are also found in other bacteria. This family includes proteins from the trb and Vir conjugal transfer systems in Agrobacterium tumefaciens and homologues of VirB proteins from other species.; GO: 0005524 ATP binding.
Probab=92.90 E-value=0.25 Score=29.94 Aligned_cols=98 Identities=18% Similarity=0.257 Sum_probs=61.0
Q ss_pred HHHHHHHHHHCC--CCCEEEEECHHHC-----CCCHHHHHHHHHHHCCCCCCEEEEECCC-CCC-----CHHHHHHH-HH
Q ss_conf 555445654204--6523775115664-----8001678999997212211146650675-433-----03567543-33
Q 537021.9.peg.4 94 IIDQIYYKPISA--RFRVYIMDEVQML-----STAAFNGLLKTLEEPPPHVKFIFATTEI-RKI-----PITVLSRC-QR 159 (369)
Q Consensus 94 l~~~~~~~p~~~--~~kv~iid~a~~m-----~~~a~NaLLK~lEEPp~~~~fil~t~~~-~~l-----l~TI~SRc-q~ 159 (369)
T Consensus 741 Lf~Ri~~-~~dg~~r~~~~~~DEaw~~l~~p~~~~~i~~~l~t~RK--~NG~~v~ATQ~~Y~d~~~s~i~~~~~~~~~T~ 817 (931)
T TIGR00929 741 LFHRIEE-ALDGSNRRFLIVIDEAWKLLGDPVFAAKIKDWLKTLRK--ANGIVVLATQSIYNDALESRIADTLIEQCATK 817 (931)
T ss_pred HHHHHHH-HHCCCCCCEEEEEECCHHHHCCHHHHHHHHHHHHHHHH--HCCEEEEECCHHHHHHHCCCHHHHHHHHCCCE
T ss_conf 9999999-72413586799851305332690789999999875766--09779863001477763154246889615834
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHH-CCCC
Q ss_conf 2102454001356787643101345-62566445653-1676
Q 537021.9.peg.4 160 FDLHRISIGDLIELFTKILQEESIE-FDPEAVAMIAR-ASDG 199 (369)
Q Consensus 160 ~~f~~l~~~~i~~~L~~i~~~E~i~-~d~~~l~~ia~-~s~G 199 (369)
T Consensus 818 I~lPn~~a-~~~dy~~----~f~~~glte~E~~~l~~~~~~~ 854 (931)
T TIGR00929 818 IFLPNPKA-DREDYAE----GFGIKGLTEREFELLKSATPEE 854 (931)
T ss_pred EECCCCCC-CHHHHHH----HCCCCCCCHHHHHHHHHHCCCC
T ss_conf 32488456-8589998----5588897989999998525701