HHsearch alignment for GI: peg_472 and conserved domain: TIGR01448
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=96.56 E-value=0.013 Score=39.33 Aligned_cols=134 Identities=18% Similarity=0.284 Sum_probs=74.0
Q ss_pred HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHH---HC-----CCCC-CCCCCCCCCCC-CCHHHHHHHCCCCCCCC
Q ss_conf 999999982876706201078798888999999999---61-----4687-77886658789-99779999779877822
Q 537021.9.peg.4 9 KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARS---LN-----YKTA-HIDVPTVEFEG-FGEHCQAIIRGNHVDVV 78 (369)
Q Consensus 9 ~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~---l~-----c~~~-~~~~~~~~~c~-~c~~c~~i~~~~~~d~~ 78 (369)
T Consensus 357 ~AL~~~-~~~K---v~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd~~v-~LaAPTGrAAkRl~E~T----- 426 (769)
T TIGR01448 357 EALKTA-IQDK---VVILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDDLPV-VLAAPTGRAAKRLAEVT----- 426 (769)
T ss_pred HHHHHH-HCCC---EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE-EEECCCHHHHHHCCCCC-----
T ss_conf 999998-6094---8998577888616899999999987168775531245677648-87377437888511002-----
Q ss_pred CCCCCCCCCHHHHHHHHHHHH----HH---HHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCH
Q ss_conf 245332233455566555445----65---42046523775115664800167899999721221114665067543303
Q 537021.9.peg.4 79 ELDAASHTSIDDVREIIDQIY----YK---PISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPI 151 (369)
Q Consensus 79 e~~~~s~~~id~ir~l~~~~~----~~---p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~ 151 (369)
T Consensus 427 ---G~~---a~TIHRLlG~~~~~~~~~k~~~~~~~~DL~IvDE~SM~Dt~L~~~lL~a~---P~~a~lllVGD~-DQL-- 494 (769)
T TIGR01448 427 ---GLE---ALTIHRLLGYGSDTKSENKNLEDPIDADLLIVDESSMVDTWLASSLLAAV---PDHARLLLVGDA-DQL-- 494 (769)
T ss_pred ---CCH---HHHHHHHHCCCCCCCCCCHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHC---CCCCEEEEECCC-CCC--
T ss_conf ---621---23477863689888732110113478776998146218899999998617---977779888376-888--
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 567543332102454001356787
Q 537021.9.peg.4 152 TVLSRCQRFDLHRISIGDLIELFT 175 (369)
Q Consensus 152 TI~SRcq~~~f~~l~~~~i~~~L~ 175 (369)
T Consensus 495 -----------PSV~pG~VL~DLi 507 (769)
T TIGR01448 495 -----------PSVGPGQVLKDLI 507 (769)
T ss_pred -----------CCCCCCHHHHHHH
T ss_conf -----------9886440899998