HHsearch alignment for GI: peg_472 and conserved domain: TIGR02237
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=96.12 E-value=0.0038 Score=43.35 Aligned_cols=90 Identities=24% Similarity=0.292 Sum_probs=50.3
Q ss_pred HHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 98287670620107879888899999999961468777886658789997799997798778222453322334555665
Q 537021.9.peg.4 15 FKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREI 94 (369)
Q Consensus 15 ~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l 94 (369)
T Consensus 9 vE~G~iTQ---iYGp~G~GKTn~c~~~a~----~a~-------------------~~G--k~v~YiDTEGGLS~ER~~q~ 60 (223)
T TIGR02237 9 VERGIITQ---IYGPPGSGKTNICLILAV----NAA-------------------RQG--KKVVYIDTEGGLSPERFKQI 60 (223)
T ss_pred CCCCEEEE---EECCCCCCHHHHHHHHHH----HHH-------------------HCC--CCEEEEECCCCCHHHHHHHH
T ss_conf 12035889---875899867899999999----998-------------------618--95899962898328999998
Q ss_pred HHHHHHHHHCCCCCEEEEECHHHCCCCH--HHHHHHHHHHC
Q ss_conf 5544565420465237751156648001--67899999721
Q 537021.9.peg.4 95 IDQIYYKPISARFRVYIMDEVQMLSTAA--FNGLLKTLEEP 133 (369)
Q Consensus 95 ~~~~~~~p~~~~~kv~iid~a~~m~~~a--~NaLLK~lEEP 133 (369)
T Consensus 61 ~~~~~~D~e~~~~~~iv-~~~~~f~eQ~~ai~~~~~~~~~~ 100 (223)
T TIGR02237 61 AEDRALDPERVLSNVIV-FEVFDFDEQEVAIQKTSKLIDRD 100 (223)
T ss_pred HHCCCCCHHHHHCCEEE-ECCCCHHHHHHHHHHHHHHHHCC
T ss_conf 63058898888415355-23535678999999999998606