HHsearch alignment for GI: peg_472 and conserved domain: TIGR02397
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=100.00 E-value=0 Score=812.56 Aligned_cols=341 Identities=45% Similarity=0.710 Sum_probs=332.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
T Consensus 16 ~~GQ~~iv~tL~NAi~~~ri~HAYLF~GpRGtGKTS~ARIfAKaLNC~-~~~~----~PCn~C~~C~~i~~g~~~DviEi 90 (363)
T TIGR02397 16 VIGQEHIVKTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ-GPDG----EPCNECESCKEINSGSSLDVIEI 90 (363)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC-CCCC----CCCCCCCHHHHHHCCCCCCEEEE
T ss_conf 235179999999999718966234502859976355899999986588-7877----87777502277652898666886
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4 81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF 160 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~ 160 (369)
T Consensus 91 DAASN~gVD~IR~l~e~v~y~P~~~kYKvYIIDEVHMLS~~AFNALLKTLEEPP~hV~FIlATTE~~KiP~TIlSRCQrF 170 (363)
T TIGR02397 91 DAASNNGVDDIRELRENVKYAPSKGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRF 170 (363)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCCCCEEECEEE
T ss_conf 48656878899999873036875544335887323028656899987652279876288873487112055402100031
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHC---CCCHHHHHHCCCCCCHHHHH
Q ss_conf 102454001356787643101345625664456531676420011000111000000---12103220001356777778
Q 537021.9.peg.4 161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCND---KIVTSSVRLMLALADRNRIM 237 (369)
Q Consensus 161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~---~i~~e~v~~llg~~~~~~i~ 237 (369)
T Consensus 171 ~Fk~i~~~~i~~~L~~I~~~E~I~~e~~AL~~IA~~a~GS~RDAlsllDQ~~~~~~~~DG~i~~~~v~~~lGl~~~~~l~ 250 (363)
T TIGR02397 171 DFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSMRDALSLLDQAISFGNGSDGKITYEDVNEMLGLVDEEKLI 250 (363)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHH
T ss_conf 26789989999999999987088317789999999628961068899999998268878865789999983577789999
Q ss_pred HHHHHHHC-CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC---CCCCCCCCHHHHHHHHHHHHHCCHHH
Q ss_conf 88876301-363346788765430476213578777534899999974574---12234499889999999986299899
Q 537021.9.peg.4 238 DLFGYLIK-GDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPE---MADTLLYSEAENARALQYSKEVSITF 313 (369)
Q Consensus 238 ~Ll~ai~~-~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~---~~~~~~~~~~e~~~i~~~a~~i~~~~ 313 (369)
T Consensus 251 ~l~~~~~~~~d~~~~l~~~~~~~~~G~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 330 (363)
T TIGR02397 251 ELLEAILNKRDTEEALKILDEILESGVDPEKFLEDLIEFLRDLLLIKKTPDEIEASNLLEILESEQEFLKELAQKLSLEF 330 (363)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 99999753876889999999998728889899999999999988644046520122443222578889999996169789
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 999999999999983027888999999999995
Q 537021.9.peg.4 314 LSRFWQMILKGISEIEGFSRPMEAVEMVLIRLA 346 (369)
Q Consensus 314 L~~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~ 346 (369)
T Consensus 331 ~~~~~~~l~~~~~~~~~~~~~~~~lE~~l~~~~ 363 (363)
T TIGR02397 331 LLRLIDILLEALKDLKFSNNPRIALEMTLLRLL 363 (363)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf 999999998778732000015899999999849