HHsearch alignment for GI: peg_472 and conserved domain: TIGR02639

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=98.66  E-value=1.4e-07  Score=76.15  Aligned_cols=127  Identities=23%  Similarity=0.377  Sum_probs=86.7

Q ss_pred             CCCHHHHHHHHHHHHHCCC--------CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHC-
Q ss_conf             9284899999999998287--------6706201078798888999999999614687778866587899977999977-
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGR--------IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIR-   71 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~--------~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~-   71 (369)
T Consensus       499 IfGQD~AI~~lv~aiK~SrAGl~~~nkP~GSFLF~GPTGVGKTElak~LA~~LGv~l~RFDM------SEYmEKHTVsRL  572 (774)
T TIGR02639       499 IFGQDEAIEQLVSAIKRSRAGLGEPNKPVGSFLFVGPTGVGKTELAKQLAEELGVHLLRFDM------SEYMEKHTVSRL  572 (774)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCHHCCCCC------HHHHHHHHHHHH
T ss_conf             15158999999999999874247788816888864798962578899999970820010465------044689999874


Q ss_pred             -CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC-----------CCCCE
Q ss_conf             -987782224533223345556655544565420465237751156648001678999997212-----------21114
Q 537021.9.peg.4   72 -GNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP-----------PHVKF  139 (369)
Q Consensus        72 -~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp-----------~~~~f  139 (369)
T Consensus       573 IGsPPGY--------VGfEqGGLLT~AvrK~P~c----VLLLDEIEKAHpDI~NILLQVMD~AtLTDN~GrKaDFRNVIL  640 (774)
T TIGR02639       573 IGSPPGY--------VGFEQGGLLTDAVRKHPHC----VLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVIL  640 (774)
T ss_pred             HCCCCCC--------CCCCCCCCCHHHHCCCCCE----EEHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEECCEEE
T ss_conf             1688885--------1316777212233128853----542346666313366678766335434058885763113688


Q ss_pred             EEEECC
Q ss_conf             665067
Q 537021.9.peg.4  140 IFATTE  145 (369)
Q Consensus       140 il~t~~  145 (369)
T Consensus       641 IMTSNa  646 (774)
T TIGR02639       641 IMTSNA  646 (774)
T ss_pred             EECCCC
T ss_conf             840370