HHsearch alignment for GI: peg_472 and conserved domain: TIGR02639
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=98.66 E-value=1.4e-07 Score=76.15 Aligned_cols=127 Identities=23% Similarity=0.377 Sum_probs=86.7
Q ss_pred CCCHHHHHHHHHHHHHCCC--------CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHC-
Q ss_conf 9284899999999998287--------6706201078798888999999999614687778866587899977999977-
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGR--------IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIR- 71 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~--------~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~- 71 (369)
T Consensus 499 IfGQD~AI~~lv~aiK~SrAGl~~~nkP~GSFLF~GPTGVGKTElak~LA~~LGv~l~RFDM------SEYmEKHTVsRL 572 (774)
T TIGR02639 499 IFGQDEAIEQLVSAIKRSRAGLGEPNKPVGSFLFVGPTGVGKTELAKQLAEELGVHLLRFDM------SEYMEKHTVSRL 572 (774)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCHHCCCCC------HHHHHHHHHHHH
T ss_conf 15158999999999999874247788816888864798962578899999970820010465------044689999874
Q ss_pred -CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC-----------CCCCE
Q ss_conf -987782224533223345556655544565420465237751156648001678999997212-----------21114
Q 537021.9.peg.4 72 -GNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP-----------PHVKF 139 (369)
Q Consensus 72 -~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp-----------~~~~f 139 (369)
T Consensus 573 IGsPPGY--------VGfEqGGLLT~AvrK~P~c----VLLLDEIEKAHpDI~NILLQVMD~AtLTDN~GrKaDFRNVIL 640 (774)
T TIGR02639 573 IGSPPGY--------VGFEQGGLLTDAVRKHPHC----VLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVIL 640 (774)
T ss_pred HCCCCCC--------CCCCCCCCCHHHHCCCCCE----EEHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEECCEEE
T ss_conf 1688885--------1316777212233128853----542346666313366678766335434058885763113688
Q ss_pred EEEECC
Q ss_conf 665067
Q 537021.9.peg.4 140 IFATTE 145 (369)
Q Consensus 140 il~t~~ 145 (369)
T Consensus 641 IMTSNa 646 (774)
T TIGR02639 641 IMTSNA 646 (774)
T ss_pred EECCCC
T ss_conf 840370