HHsearch alignment for GI: peg_472 and conserved domain: cd01123

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

Probab=96.47  E-value=0.0066  Score=41.57  Aligned_cols=22  Identities=27%  Similarity=0.244  Sum_probs=18.4

Q ss_pred             EEEHHCCCCCCCHHHHHHHHHH
Q ss_conf             0620107879888899999999
Q 537021.9.peg.4   22 QSYMLSGTRGIGKTTTARIIAR   43 (369)
Q Consensus        22 ha~lf~G~~G~GK~~~a~~~A~   43 (369)
T Consensus        20 ~itEi~G~~GsGKTql~lqla~   41 (235)
T cd01123          20 SITEIFGEFGSGKTQLCHQLAV   41 (235)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
T ss_conf             7999999999849999999999