HHsearch alignment for GI: peg_472 and conserved domain: cd01124

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.86  E-value=0.032  Score=36.48  Aligned_cols=20  Identities=45%  Similarity=0.494  Sum_probs=17.3

Q ss_pred             HHCCCCCCCHHHHHHHHHHH
Q ss_conf             01078798888999999999
Q 537021.9.peg.4   25 MLSGTRGIGKTTTARIIARS   44 (369)
Q Consensus        25 lf~G~~G~GK~~~a~~~A~~   44 (369)
T Consensus         3 Li~G~pGsGKT~~a~qfl~~   22 (187)
T cd01124           3 LLSGGPGTGKTTFALQFLYA   22 (187)
T ss_pred             EEEECCCCCHHHHHHHHHHH
T ss_conf             58768999999999999999