HHsearch alignment for GI: peg_472 and conserved domain: cd01130
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.60 E-value=0.028 Score=36.89 Aligned_cols=141 Identities=18% Similarity=0.134 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 89999999999828767062010787988889999999996146877788665878999779999779877822245332
Q 537021.9.peg.4 5 KPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAAS 84 (369)
Q Consensus 5 ~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s 84 (369)
T Consensus 12 ~~~~~~L~~~v~~~~---nIlIsG~tGSGKTTll~al~~~i~~~~ri---vt------iEd~~El~-l~~~~~v~l~~~~ 78 (186)
T cd01130 12 PLQAAYLWLAVEARK---NILISGGTGSGKTTLLNALLAFIPPDERI---IT------IEDTAELQ-LPHPNWVRLVTRP 78 (186)
T ss_pred HHHHHHHHHHHHCCC---CEEEECCCCCCHHHHHHHHHHHCCCCCCE---EE------ECCCHHHC-CCCCCEEEEEEEC
T ss_conf 999999999998599---89998999998999999999613345645---98------41535404-7777568888604
Q ss_pred -----CCCHHHHHHHHH-HHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf -----233455566555-44565420465237751156648001678999997212211146650675433035675433
Q 537021.9.peg.4 85 -----HTSIDDVREIID-QIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQ 158 (369)
Q Consensus 85 -----~~~id~ir~l~~-~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq 158 (369)
T Consensus 79 ~~~~~~~~~-~~~~li~~aLR~~-----pd~iivGEiR~--~Ea~-~~l~a~~tGh~g---~ltTiHa~s~~~a-i~Rl~ 145 (186)
T cd01130 79 GNVEGSGEV-TMADLLRSALRMR-----PDRIIVGEVRG--GEAL-DLLQAMNTGHPG---GMTTIHANSAEEA-LTRLE 145 (186)
T ss_pred CCCCCCCEE-CHHHHHHHHCCCC-----CCEEECCCCCC--HHHH-HHHHHHHCCCCC---CCCCCCCCCHHHH-HHHHH
T ss_conf 645786503-4999988736689-----97373175683--9999-999999748986---0303158999999-99999
Q ss_pred H-HHCCCCCCHHHH
Q ss_conf 3-210245400135
Q 537021.9.peg.4 159 R-FDLHRISIGDLI 171 (369)
Q Consensus 159 ~-~~f~~l~~~~i~ 171 (369)
T Consensus 146 ~l~~~~~~~~~~~~ 159 (186)
T cd01130 146 LLPSNVPLGRPLLR 159 (186)
T ss_pred HHHHCCCCCHHHHH
T ss_conf 88754799999999