HHsearch alignment for GI: peg_472 and conserved domain: cd01131
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.12 E-value=0.2 Score=30.62 Aligned_cols=113 Identities=17% Similarity=0.211 Sum_probs=52.9
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 62010787988889999999996146877788665-87899977999977987782224533223345556655544565
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV-EFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYK 101 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~-~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~ 101 (369)
T Consensus 3 liLitG~TGSGKTTtl~all~~i~~~~~~~-IiTiEDP-------iE~---~~~~~~~~i~q~e~g~~-~~sf~~-~lr~ 69 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHH-ILTIEDP-------IEF---VHESKRSLINQREVGLD-TLSFEN-ALKA 69 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCE-EEEECCC-------HHH---HCCCCCEEEEECCCCCC-CCCHHH-HHHH
T ss_conf 899989999979999999998536378836-9996473-------775---23676448873330788-637999-9999
Q ss_pred HHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH
Q ss_conf 42046523775115664800167899999721221114665067543303567
Q 537021.9.peg.4 102 PISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVL 154 (369)
Q Consensus 102 p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~ 154 (369)
T Consensus 70 aLR~~PDvI~vGEiR--d~et~~~al~aa~T--GH--lV~sTlHa~sa~~ai~ 116 (198)
T cd01131 70 ALRQDPDVILVGEMR--DLETIRLALTAAET--GH--LVMSTLHTNSAAKTID 116 (198)
T ss_pred HHHHCCCEEECCCCC--CHHHHHHHHHHHHC--CC--EEEEEECCCCHHHHHH
T ss_conf 985488857527778--99999999999971--99--3999767598999999