HHsearch alignment for GI: peg_472 and conserved domain: cd03115

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.93  E-value=0.0039  Score=43.26  Aligned_cols=23  Identities=48%  Similarity=0.645  Sum_probs=18.9

Q ss_conf             20107879888899999999961
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLN   46 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~   46 (369)
T Consensus         3 i~lvGptGvGKTTTiaKLA~~~~   25 (173)
T cd03115           3 ILLVGLQGVGKTTTAAKLALYLK   25 (173)
T ss_conf             99989999988999999999999