HHsearch alignment for GI: peg_472 and conserved domain: cd03228
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.06 E-value=0.0092 Score=40.49 Aligned_cols=118 Identities=14% Similarity=0.182 Sum_probs=61.1
Q ss_pred EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH---HHHHHHC-----CCCCCCCCCCCCCCC-CHHHHH
Q ss_conf 0620107879888899999999961468777886658789997---7999977-----987782224533223-345556
Q 537021.9.peg.4 22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGE---HCQAIIR-----GNHVDVVELDAASHT-SIDDVR 92 (369)
Q Consensus 22 ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~---~c~~i~~-----~~~~d~~e~~~~s~~-~id~ir 92 (369)
T Consensus 29 e~i~ivG~sGsGKSTLl~ll~gl~~p~~G~I~-----i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~tv~eNiLSgGq~Q 103 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL-----IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQ 103 (171)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE-----ECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHCCCHHHHH
T ss_conf 89999999998399999999767758974899-----9999988599899863189996668437577999774488999
Q ss_pred HHHHHHHHHHHCCCCCEEEEECHH-HCCCCHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 655544565420465237751156-6480016789999972122111466506754
Q 537021.9.peg.4 93 EIIDQIYYKPISARFRVYIMDEVQ-MLSTAAFNGLLKTLEEPPPHVKFIFATTEIR 147 (369)
Q Consensus 93 ~l~~~~~~~p~~~~~kv~iid~a~-~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~ 147 (369)
T Consensus 104 ri---~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~Tvi~vtH~~~ 156 (171)
T cd03228 104 RI---AIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLS 156 (171)
T ss_pred HH---HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHH
T ss_conf 99---999999748998999577667998999999999999809998999957999