HHsearch alignment for GI: peg_472 and conserved domain: cd03229

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.71  E-value=0.1  Score=32.72  Aligned_cols=23  Identities=39%  Similarity=0.364  Sum_probs=18.4

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             62010787988889999999996
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l   45 (369)
T Consensus        28 ~~~ivGpSG~GKSTllr~i~Gl~   50 (178)
T cd03229          28 IVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCC
T ss_conf             99999999983999999998599