HHsearch alignment for GI: peg_472 and conserved domain: cd03238
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.54 E-value=0.48 Score=27.85 Aligned_cols=117 Identities=15% Similarity=0.142 Sum_probs=0.0
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC-----CCCCCHHHHHHHCCCCC---CCCCCCCCCCCCHHHHHHHH
Q ss_conf 20107879888899999999961468777886658-----78999779999779877---82224533223345556655
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVE-----FEGFGEHCQAIIRGNHV---DVVELDAASHTSIDDVREII 95 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~-----~c~~c~~c~~i~~~~~~---d~~e~~~~s~~~id~ir~l~ 95 (369)
T Consensus 24 ~~iiG~nGsGKSTLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~LSGGqkQRvaiAraL~ 103 (176)
T cd03238 24 VVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELF 103 (176)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCHHHCCHHHCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999989999998887610311203210137553688577999997488667789916868999999999999998
Q ss_pred HHHHHHHHCCCCCEEEEECH-HHCCCCHHHHHHHHHHH-CCCCCCEEEEECCCC
Q ss_conf 54456542046523775115-66480016789999972-122111466506754
Q 537021.9.peg.4 96 DQIYYKPISARFRVYIMDEV-QMLSTAAFNGLLKTLEE-PPPHVKFIFATTEIR 147 (369)
Q Consensus 96 ~~~~~~p~~~~~kv~iid~a-~~m~~~a~NaLLK~lEE-Pp~~~~fil~t~~~~ 147 (369)
T Consensus 104 -------~~p~~~ililDEPtsgLD~~~~~~l~~~l~~l~~~g~TvI~vtHd~~ 150 (176)
T cd03238 104 -------SEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD 150 (176)
T ss_pred -------HCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf -------68998689971774458987999999999999987998999947879