HHsearch alignment for GI: peg_472 and conserved domain: cd03246
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.87 E-value=0.013 Score=39.34 Aligned_cols=116 Identities=17% Similarity=0.188 Sum_probs=55.8
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH---HHHHHC-----CCCCCCCCCCCCCCC-CHHHH-H
Q ss_conf 6201078798888999999999614687778866587899977---999977-----987782224533223-34555-6
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEH---CQAIIR-----GNHVDVVELDAASHT-SIDDV-R 92 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~---c~~i~~-----~~~~d~~e~~~~s~~-~id~i-r 92 (369)
T Consensus 30 ~vaIvG~sGsGKSTLl~ll~gl~~p~~G~i~-----i~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~ti~eNiLSGGQkQR 104 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRPTSGRVR-----LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQR 104 (173)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEE-----ECCEECCCCCHHHHHCCEEEEECCCEECCCCHHHHCCCHHHHHH
T ss_conf 9999999998099999999666667999899-----99999332899898420899908883677758997676999999
Q ss_pred HHHHHHHHHHHCCCCCEEEEECHH-HCCCCHHHHHHHHHHHC-CCCCCEEEEECCCC
Q ss_conf 655544565420465237751156-64800167899999721-22111466506754
Q 537021.9.peg.4 93 EIIDQIYYKPISARFRVYIMDEVQ-MLSTAAFNGLLKTLEEP-PPHVKFIFATTEIR 147 (369)
Q Consensus 93 ~l~~~~~~~p~~~~~kv~iid~a~-~m~~~a~NaLLK~lEEP-p~~~~fil~t~~~~ 147 (369)
T Consensus 105 valA----Ral~~~p~ililDEpts~LD~~~e~~i~~~l~~l~~~~~Tvi~vtH~~~ 157 (173)
T cd03246 105 LGLA----RALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE 157 (173)
T ss_pred HHHH----HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 9999----9982799999996876689989999999999978648989999847999