HHsearch alignment for GI: peg_472 and conserved domain: cd03248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.01 E-value=0.021 Score=37.86 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=19.0
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 62010787988889999999996
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l 45 (369)
T Consensus 42 ~vaIvG~sGsGKSTL~~ll~gl~ 64 (226)
T cd03248 42 VTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999984999999996454