HHsearch alignment for GI: peg_472 and conserved domain: cd03251
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.52 E-value=0.069 Score=34.06 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=18.4
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 62010787988889999999996
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l 45 (369)
T Consensus 30 ~i~IvG~sGsGKSTLl~ll~gl~ 52 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999899982999999996676