Query 537021.9.peg.472_1
Match_columns 369
No_of_seqs 206 out of 4494
Neff 8.6
Searched_HMMs 39220
Date Tue May 24 22:52:21 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_472.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02397 dnaX_nterm DNA polym 100.0 0 0 812.6 25.7 341 1-346 16-363 (363)
2 PRK09111 DNA polymerase III su 100.0 0 0 753.5 31.7 365 1-365 25-390 (600)
3 PRK05563 DNA polymerase III su 100.0 0 0 724.8 31.0 361 1-365 18-378 (541)
4 PRK06645 DNA polymerase III su 100.0 0 0 715.4 28.8 360 1-362 23-385 (507)
5 PRK06647 DNA polymerase III su 100.0 0 0 705.0 30.1 359 1-366 18-376 (560)
6 PRK06305 DNA polymerase III su 100.0 0 0 704.4 30.4 347 1-364 19-365 (462)
7 PRK06674 DNA polymerase III su 100.0 0 0 701.3 30.1 358 1-363 18-380 (563)
8 PRK12323 DNA polymerase III su 100.0 0 0 698.4 28.2 347 1-350 18-365 (721)
9 PRK07764 DNA polymerase III su 100.0 0 0 690.2 30.6 360 1-364 17-381 (775)
10 PRK05648 DNA polymerase III su 100.0 0 0 690.8 27.4 343 1-350 18-360 (705)
11 PRK07994 DNA polymerase III su 100.0 0 0 688.9 27.9 344 1-350 18-361 (643)
12 PRK08691 DNA polymerase III su 100.0 0 0 689.6 26.9 343 1-350 18-360 (704)
13 PRK08770 DNA polymerase III su 100.0 0 0 684.5 27.6 341 1-350 18-358 (663)
14 PRK08853 DNA polymerase III su 100.0 0 0 685.3 26.6 343 1-350 18-360 (717)
15 PRK07003 DNA polymerase III su 100.0 0 0 684.4 27.1 343 1-350 18-360 (816)
16 PRK06872 DNA polymerase III su 100.0 0 0 680.2 27.5 339 1-350 18-356 (696)
17 PRK07270 DNA polymerase III su 100.0 0 0 676.0 29.2 339 1-351 17-356 (557)
18 COG2812 DnaX DNA polymerase II 100.0 0 0 666.7 25.5 344 1-350 18-362 (515)
19 PRK08451 DNA polymerase III su 100.0 0 0 663.6 27.1 338 1-366 16-353 (523)
20 PRK07133 DNA polymerase III su 100.0 0 0 632.8 25.4 338 1-350 20-357 (718)
21 PRK05896 DNA polymerase III su 100.0 0 0 626.5 26.2 344 1-348 18-363 (613)
22 PRK07940 DNA polymerase III su 100.0 0 0 555.3 26.9 334 1-347 7-394 (395)
23 PRK08058 DNA polymerase III su 100.0 0 0 542.3 27.9 316 1-346 7-327 (329)
24 PRK05564 DNA polymerase III su 100.0 0 0 514.8 25.6 305 1-347 6-312 (313)
25 PRK05707 DNA polymerase III su 100.0 0 0 497.2 28.1 309 12-350 13-326 (328)
26 PRK07993 DNA polymerase III su 100.0 0 0 466.9 28.2 311 4-349 7-323 (334)
27 PRK06871 DNA polymerase III su 100.0 0 0 465.1 28.4 312 4-348 6-321 (324)
28 PRK07471 DNA polymerase III su 100.0 0 0 465.3 26.6 326 1-348 19-361 (363)
29 PRK06964 DNA polymerase III su 100.0 0 0 463.6 27.5 306 4-348 6-340 (342)
30 PRK09112 DNA polymerase III su 100.0 0 0 454.1 25.8 311 1-349 25-349 (352)
31 PRK08699 DNA polymerase III su 100.0 0 0 446.2 28.2 307 4-350 6-322 (325)
32 PRK12402 replication factor C 100.0 0 0 442.3 22.6 315 1-345 17-336 (337)
33 PRK07399 DNA polymerase III su 100.0 0 0 429.0 21.0 284 1-348 6-313 (314)
34 PRK07276 DNA polymerase III su 100.0 0 0 424.2 23.2 281 4-343 7-290 (290)
35 PRK06090 DNA polymerase III su 100.0 0 0 416.5 27.3 302 4-346 8-314 (319)
36 TIGR00678 holB DNA polymerase 100.0 0 0 437.7 11.7 188 9-204 2-216 (216)
37 PRK08769 DNA polymerase III su 100.0 0 0 420.3 23.0 298 4-354 9-315 (319)
38 PRK00440 rfc replication facto 100.0 0 0 410.8 23.8 296 1-349 18-316 (318)
39 PRK05917 DNA polymerase III su 100.0 0 0 398.7 20.7 275 4-351 2-279 (290)
40 KOG0989 consensus 100.0 0 0 384.6 18.8 307 1-329 38-345 (346)
41 PRK07132 DNA polymerase III su 100.0 0 0 374.3 21.2 297 4-347 3-300 (303)
42 PRK05818 DNA polymerase III su 100.0 0 0 380.9 15.8 250 20-275 7-262 (262)
43 COG0470 HolB ATPase involved i 100.0 4.6E-42 0 330.5 18.7 199 1-215 3-206 (325)
44 PRK13342 recombination factor 100.0 6.3E-40 1.5E-44 314.7 20.4 241 1-274 15-277 (417)
45 KOG0991 consensus 100.0 7.4E-40 1.8E-44 314.2 20.6 299 1-352 29-330 (333)
46 PRK04195 replication factor C 100.0 3.6E-35 9.2E-40 279.6 16.7 235 1-270 16-262 (403)
47 PRK13341 recombination factor 100.0 1.7E-32 4.4E-37 259.8 22.3 241 1-273 30-299 (726)
48 COG2256 MGS1 ATPase related to 100.0 1.2E-32 3E-37 261.1 19.6 243 1-275 26-292 (436)
49 pfam05496 RuvB_N Holliday junc 100.0 6.8E-33 1.7E-37 262.8 10.6 182 1-217 26-231 (234)
50 KOG0990 consensus 100.0 1.4E-31 3.7E-36 253.0 10.8 255 1-279 43-309 (360)
51 PRK06581 DNA polymerase III su 100.0 1.1E-29 2.7E-34 239.2 7.6 142 7-169 1-152 (263)
52 PRK04132 replication factor C 100.0 1.5E-27 3.8E-32 223.4 15.3 210 112-350 651-861 (863)
53 KOG2035 consensus 99.9 1.9E-25 5E-30 207.8 17.0 311 1-346 15-340 (351)
54 KOG2028 consensus 99.9 7.8E-25 2E-29 203.4 16.7 316 1-346 140-506 (554)
55 PRK05574 holA DNA polymerase I 99.9 1.2E-23 3E-28 194.7 20.2 310 10-346 6-335 (336)
56 PRK07452 DNA polymerase III su 99.9 1.7E-23 4.5E-28 193.4 20.8 304 20-350 1-326 (326)
57 PRK05629 hypothetical protein; 99.9 8.1E-23 2.1E-27 188.5 21.2 305 21-350 16-330 (331)
58 PRK07914 hypothetical protein; 99.9 5.4E-19 1.4E-23 160.3 20.3 301 20-349 4-317 (320)
59 PRK06585 holA DNA polymerase I 99.8 2.6E-18 6.7E-23 155.2 21.6 312 11-351 9-340 (343)
60 pfam12169 DNA_pol3_gamma3 DNA 99.8 2.3E-19 5.8E-24 163.0 15.5 143 219-361 1-143 (143)
61 PRK08487 DNA polymerase III su 99.8 1.1E-16 2.9E-21 143.2 23.1 306 9-348 4-325 (328)
62 TIGR02902 spore_lonB ATP-depen 99.8 4.3E-19 1.1E-23 161.0 7.5 199 1-224 67-325 (532)
63 COG1466 HolA DNA polymerase II 99.8 3.8E-16 9.7E-21 139.2 21.7 311 10-348 5-332 (334)
64 TIGR02903 spore_lon_C ATP-depe 99.8 9.9E-19 2.5E-23 158.3 8.3 182 1-209 157-397 (616)
65 PRK00080 ruvB Holliday junctio 99.8 8.4E-18 2.1E-22 151.5 11.6 179 1-214 27-229 (328)
66 PRK04132 replication factor C 99.7 2E-18 5.1E-23 156.0 5.9 133 1-157 27-161 (863)
67 TIGR00635 ruvB Holliday juncti 99.7 1.4E-16 3.7E-21 142.4 9.7 174 2-210 7-204 (305)
68 PRK08485 DNA polymerase III su 99.6 1.1E-15 2.8E-20 135.8 6.5 76 84-162 34-109 (204)
69 COG2255 RuvB Holliday junction 99.6 6.2E-14 1.6E-18 122.9 12.2 175 2-211 29-227 (332)
70 CHL00181 cbbX CbbX; Provisiona 99.6 1.5E-14 3.8E-19 127.5 8.5 164 1-193 25-224 (287)
71 PRK00411 cdc6 cell division co 99.5 1.7E-13 4.3E-18 119.7 12.0 218 6-229 41-280 (394)
72 KOG1969 consensus 99.5 1.8E-13 4.7E-18 119.5 11.5 168 22-218 327-520 (877)
73 pfam03215 Rad17 Rad17 cell cyc 99.5 5.6E-13 1.4E-17 115.9 13.2 197 6-209 30-256 (490)
74 pfam06068 TIP49 TIP49 C-termin 99.5 6.8E-13 1.7E-17 115.3 11.7 102 107-209 276-390 (395)
75 TIGR01128 holA DNA polymerase 99.4 1.8E-10 4.7E-15 97.3 18.7 299 21-346 2-331 (331)
76 cd00009 AAA The AAA+ (ATPases 99.3 1.1E-11 2.9E-16 106.2 10.4 131 2-158 1-144 (151)
77 TIGR03015 pepcterm_ATPase puta 99.3 2.2E-11 5.5E-16 104.2 11.4 203 3-213 27-244 (269)
78 PRK10865 protein disaggregatio 99.3 1.4E-11 3.6E-16 105.6 8.4 184 1-214 180-400 (857)
79 TIGR00763 lon ATP-dependent pr 99.3 5.3E-12 1.3E-16 108.7 6.0 154 21-196 449-640 (941)
80 COG1223 Predicted ATPase (AAA+ 99.3 3.6E-11 9.1E-16 102.6 9.9 172 1-199 123-317 (368)
81 TIGR03345 VI_ClpV1 type VI sec 99.3 1.1E-11 2.9E-16 106.2 7.2 183 1-213 189-408 (852)
82 COG1224 TIP49 DNA helicase TIP 99.3 8.8E-11 2.2E-15 99.7 11.2 118 107-225 292-426 (450)
83 CHL00095 clpC Clp protease ATP 99.3 2.8E-11 7.1E-16 103.3 8.5 182 1-213 181-399 (823)
84 pfam00004 AAA ATPase family as 99.2 3.2E-11 8.2E-16 102.9 7.7 111 24-160 1-126 (131)
85 TIGR03346 chaperone_ClpB ATP-d 99.2 3.4E-11 8.7E-16 102.7 7.2 184 1-214 175-395 (852)
86 PRK11034 clpA ATP-dependent Cl 99.2 1.1E-10 2.8E-15 98.9 9.0 182 1-213 188-407 (758)
87 KOG1970 consensus 99.2 4.5E-10 1.2E-14 94.4 12.0 195 8-213 91-320 (634)
88 TIGR02928 TIGR02928 orc1/cdc6 99.2 1.3E-09 3.3E-14 91.0 13.3 226 9-243 31-301 (383)
89 TIGR03420 DnaA_homol_Hda DnaA 99.2 1.1E-09 2.7E-14 91.7 12.8 193 2-228 19-225 (226)
90 COG0542 clpA ATP-binding subun 99.1 1.9E-10 4.8E-15 97.2 7.0 102 91-198 251-370 (786)
91 PRK03992 proteasome-activating 99.1 1E-09 2.6E-14 91.8 10.5 172 1-200 134-337 (390)
92 PRK05342 clpX ATP-dependent pr 99.1 5.3E-10 1.4E-14 93.9 8.9 112 1-133 74-215 (411)
93 CHL00176 ftsH cell division pr 99.1 6.5E-10 1.7E-14 93.3 8.9 177 1-205 179-386 (631)
94 KOG1968 consensus 99.1 3.7E-10 9.3E-15 95.1 7.2 173 23-212 359-535 (871)
95 COG1474 CDC6 Cdc6-related prot 99.1 2.6E-09 6.7E-14 88.8 10.8 209 6-226 28-260 (366)
96 PRK10787 DNA-binding ATP-depen 99.1 1.6E-09 4.1E-14 90.4 9.5 180 3-203 326-543 (784)
97 KOG1942 consensus 99.0 1.3E-08 3.3E-13 83.7 12.7 119 107-226 297-433 (456)
98 PRK10733 hflB ATP-dependent me 99.0 3.5E-09 8.9E-14 87.9 8.4 175 1-203 154-359 (644)
99 PRK10865 protein disaggregatio 99.0 2.1E-08 5.4E-13 82.1 12.2 133 1-147 570-721 (857)
100 PRK05642 DNA replication initi 99.0 2.7E-08 6.9E-13 81.3 12.6 197 1-230 22-234 (234)
101 COG0466 Lon ATP-dependent Lon 99.0 3.4E-09 8.6E-14 88.0 7.8 172 5-196 333-536 (782)
102 PTZ00112 origin recognition co 98.9 5.2E-09 1.3E-13 86.6 8.6 214 6-254 278-524 (650)
103 TIGR03346 chaperone_ClpB ATP-d 98.9 2E-08 5.1E-13 82.3 11.6 133 1-148 567-720 (852)
104 PRK08903 hypothetical protein; 98.9 1.4E-08 3.5E-13 83.5 10.6 192 1-229 21-224 (227)
105 PRK05201 hslU ATP-dependent pr 98.9 4.6E-09 1.2E-13 87.0 8.0 90 108-197 250-379 (442)
106 PRK06893 DNA replication initi 98.9 3E-08 7.6E-13 81.0 11.5 195 2-230 20-229 (229)
107 pfam00308 Bac_DnaA Bacterial d 98.9 1.5E-08 3.8E-13 83.2 9.7 193 1-215 11-216 (219)
108 KOG0730 consensus 98.9 4.1E-08 1E-12 80.0 11.3 28 19-46 216-243 (693)
109 KOG2004 consensus 98.9 1.7E-08 4.4E-13 82.8 9.4 172 3-194 415-622 (906)
110 pfam07724 AAA_2 AAA domain (Cd 98.9 1.2E-09 3E-14 91.4 3.2 95 23-132 5-101 (168)
111 PRK13765 ATP-dependent proteas 98.9 8.6E-08 2.2E-12 77.6 12.6 194 1-197 33-352 (637)
112 CHL00081 chlI Mg-protoporyphyr 98.9 5.5E-08 1.4E-12 79.0 11.6 152 1-157 14-204 (347)
113 KOG1051 consensus 98.9 7.6E-09 1.9E-13 85.4 6.9 132 1-150 564-715 (898)
114 PRK05907 hypothetical protein; 98.8 1.3E-06 3.3E-11 68.9 17.5 244 91-348 54-311 (311)
115 TIGR02639 ClpA ATP-dependent C 98.8 2.1E-08 5.3E-13 82.1 8.0 168 1-199 210-411 (774)
116 CHL00195 ycf46 Ycf46; Provisio 98.8 3.4E-08 8.6E-13 80.6 8.9 148 19-199 257-427 (491)
117 PRK08084 DNA replication initi 98.8 1.9E-07 4.9E-12 75.0 12.5 194 1-228 25-233 (235)
118 TIGR02881 spore_V_K stage V sp 98.8 5E-08 1.3E-12 79.4 9.4 149 16-193 37-206 (261)
119 COG0714 MoxR-like ATPases [Gen 98.8 4.7E-08 1.2E-12 79.5 9.3 144 1-169 26-193 (329)
120 TIGR01241 FtsH_fam ATP-depende 98.8 1.1E-08 2.7E-13 84.3 5.9 167 1-199 61-263 (505)
121 PRK11034 clpA ATP-dependent Cl 98.8 1.9E-07 4.8E-12 75.1 11.4 128 1-147 460-608 (758)
122 PRK08727 hypothetical protein; 98.7 2.5E-07 6.4E-12 74.2 11.7 194 1-228 22-228 (233)
123 CHL00095 clpC Clp protease ATP 98.7 1.9E-07 4.9E-12 75.1 11.0 132 1-145 511-661 (823)
124 COG0464 SpoVK ATPases of the A 98.7 2.7E-07 6.8E-12 74.0 11.6 153 19-199 274-445 (494)
125 PRK00149 dnaA chromosomal repl 98.7 3.2E-06 8.1E-11 66.0 16.8 179 18-228 142-343 (447)
126 pfam01637 Arch_ATPase Archaeal 98.7 4.3E-07 1.1E-11 72.5 12.0 195 2-203 2-219 (223)
127 COG0593 DnaA ATPase involved i 98.7 4.1E-07 1E-11 72.6 11.8 194 11-229 101-311 (408)
128 KOG2680 consensus 98.7 2.4E-07 6.1E-12 74.4 10.5 101 107-208 289-402 (454)
129 TIGR03345 VI_ClpV1 type VI sec 98.7 3E-07 7.8E-12 73.6 11.0 131 1-147 568-719 (852)
130 pfam06144 DNA_pol3_delta DNA p 98.7 4.6E-08 1.2E-12 79.6 6.4 161 24-210 1-169 (172)
131 TIGR02639 ClpA ATP-dependent C 98.7 1.4E-07 3.5E-12 76.1 8.1 127 1-145 499-646 (774)
132 TIGR00602 rad24 checkpoint pro 98.7 6.2E-07 1.6E-11 71.3 11.4 189 22-216 119-356 (670)
133 PRK06620 hypothetical protein; 98.6 5.1E-07 1.3E-11 71.9 10.1 178 4-227 24-212 (214)
134 KOG0742 consensus 98.6 6.3E-07 1.6E-11 71.2 9.8 142 11-178 370-528 (630)
135 PRK13407 bchI magnesium chelat 98.6 5.4E-07 1.4E-11 71.7 9.0 140 1-147 10-181 (334)
136 KOG0733 consensus 98.5 4.6E-07 1.2E-11 72.3 8.2 159 21-208 223-403 (802)
137 PRK11361 acetoacetate metaboli 98.5 2.9E-07 7.5E-12 73.7 7.1 206 1-224 145-386 (457)
138 COG1221 PspF Transcriptional r 98.5 2.6E-07 6.7E-12 74.0 6.1 197 1-217 80-311 (403)
139 KOG0738 consensus 98.5 2.8E-06 7.1E-11 66.5 11.1 167 1-199 214-415 (491)
140 PRK10923 glnG nitrogen regulat 98.5 2.3E-06 5.8E-11 67.1 10.6 206 1-224 140-381 (469)
141 PRK11608 pspF phage shock prot 98.5 6.9E-07 1.8E-11 70.9 7.7 198 1-217 8-242 (325)
142 PRK10820 DNA-binding transcrip 98.5 1.5E-06 3.9E-11 68.4 9.2 197 1-224 206-440 (513)
143 COG0542 clpA ATP-binding subun 98.5 3.9E-06 9.8E-11 65.4 11.0 135 1-150 493-648 (786)
144 KOG0743 consensus 98.5 6.6E-07 1.7E-11 71.1 7.0 137 6-176 212-381 (457)
145 PRK09087 hypothetical protein; 98.4 2.2E-06 5.5E-11 67.3 9.5 181 4-229 29-220 (226)
146 pfam07728 AAA_5 AAA domain (dy 98.4 5E-07 1.3E-11 71.9 6.1 88 24-132 2-92 (139)
147 smart00382 AAA ATPases associa 98.4 3.6E-07 9.2E-12 73.0 5.0 116 21-145 2-125 (148)
148 COG1219 ClpX ATP-dependent pro 98.4 1.6E-07 4.2E-12 75.5 3.3 108 1-132 63-202 (408)
149 pfam01078 Mg_chelatase Magnesi 98.4 1.4E-06 3.6E-11 68.6 7.8 114 1-132 5-132 (207)
150 TIGR00382 clpX ATP-dependent C 98.4 6.3E-07 1.6E-11 71.2 5.5 111 1-136 103-266 (452)
151 KOG2227 consensus 98.4 6.3E-07 1.6E-11 71.2 5.4 200 7-212 162-376 (529)
152 COG1239 ChlI Mg-chelatase subu 98.4 4.6E-06 1.2E-10 64.8 9.6 163 1-168 19-221 (423)
153 KOG0734 consensus 98.4 2.6E-06 6.6E-11 66.7 8.0 151 17-199 333-504 (752)
154 pfam07726 AAA_3 ATPase family 98.3 5.4E-07 1.4E-11 71.7 4.4 85 23-132 1-88 (131)
155 KOG1514 consensus 98.3 1.6E-05 4E-10 60.9 11.9 191 6-216 407-629 (767)
156 KOG0731 consensus 98.3 1.6E-05 4E-10 60.9 11.9 126 1-153 313-467 (774)
157 KOG0740 consensus 98.3 8.2E-06 2.1E-10 63.0 9.7 166 2-199 156-354 (428)
158 pfam05673 DUF815 Protein of un 98.3 1.7E-05 4.4E-10 60.6 11.1 122 1-154 30-160 (248)
159 PRK10365 transcriptional regul 98.3 2.8E-06 7.1E-11 66.5 7.0 205 1-223 141-381 (441)
160 PRK11388 DNA-binding transcrip 98.3 1.3E-05 3.3E-10 61.6 10.0 203 1-224 327-564 (639)
161 PRK12422 chromosomal replicati 98.3 6E-05 1.5E-09 56.6 13.2 156 22-211 142-317 (455)
162 PRK05022 anaerobic nitric oxid 98.3 7.2E-06 1.8E-10 63.4 8.4 194 1-215 188-419 (510)
163 COG1222 RPT1 ATP-dependent 26S 98.2 7.5E-06 1.9E-10 63.3 7.9 170 3-200 155-356 (406)
164 KOG2170 consensus 98.2 1.8E-05 4.6E-10 60.5 9.4 132 1-152 84-231 (344)
165 KOG0736 consensus 98.2 4.1E-05 1E-09 57.9 10.9 169 4-199 406-596 (953)
166 COG0465 HflB ATP-dependent Zn 98.2 1E-05 2.6E-10 62.3 7.7 130 1-158 152-309 (596)
167 PRK04841 transcriptional regul 98.2 0.00048 1.2E-08 50.0 16.0 182 10-201 21-219 (903)
168 KOG0744 consensus 98.2 3.6E-06 9.1E-11 65.7 5.1 128 23-175 179-337 (423)
169 KOG0733 consensus 98.1 4.9E-05 1.2E-09 57.3 10.7 164 3-196 515-711 (802)
170 pfam00493 MCM MCM2/3/5 family. 98.1 2.1E-05 5.4E-10 60.0 8.1 141 1-166 26-208 (327)
171 pfam00158 Sigma54_activat Sigm 98.0 8.2E-06 2.1E-10 63.0 5.2 113 1-132 1-119 (168)
172 KOG0737 consensus 98.0 2E-05 5E-10 60.2 7.1 169 3-199 96-294 (386)
173 COG2204 AtoC Response regulato 98.0 3.2E-05 8.2E-10 58.6 7.7 200 1-224 143-384 (464)
174 pfam05621 TniB Bacterial TniB 98.0 0.00011 2.9E-09 54.6 10.4 195 2-210 37-264 (302)
175 COG2607 Predicted ATPase (AAA+ 98.0 0.00021 5.4E-09 52.6 11.5 124 1-156 62-194 (287)
176 TIGR00368 TIGR00368 Mg chelata 98.0 3.8E-06 9.7E-11 65.5 2.6 40 1-43 196-235 (505)
177 KOG0739 consensus 98.0 0.00026 6.6E-09 52.0 11.8 271 1-311 135-437 (439)
178 TIGR01242 26Sp45 26S proteasom 97.9 2.8E-05 7E-10 59.1 6.4 156 21-205 156-332 (364)
179 PRK09862 putative ATP-dependen 97.9 7.6E-05 1.9E-09 55.9 8.5 149 1-177 193-371 (506)
180 COG3267 ExeA Type II secretory 97.9 0.00027 7E-09 51.7 11.3 186 4-202 36-240 (269)
181 PRK10875 recD exonuclease V su 97.9 9.5E-05 2.4E-09 55.2 8.5 111 23-144 164-295 (607)
182 KOG0741 consensus 97.9 4.4E-05 1.1E-09 57.6 6.8 122 8-150 231-383 (744)
183 KOG0735 consensus 97.9 0.00011 2.9E-09 54.6 8.3 171 21-213 431-622 (952)
184 TIGR02442 Cob-chelat-sub cobal 97.9 1.8E-05 4.7E-10 60.4 4.2 272 1-347 6-312 (688)
185 COG0606 Predicted ATPase with 97.8 3.7E-05 9.5E-10 58.1 5.7 41 1-44 181-221 (490)
186 TIGR01243 CDC48 AAA family ATP 97.8 0.00024 6.1E-09 52.2 9.6 175 2-205 544-750 (980)
187 pfam00931 NB-ARC NB-ARC domain 97.8 5E-05 1.3E-09 57.2 6.1 184 7-202 4-196 (285)
188 COG2909 MalT ATP-dependent tra 97.8 0.003 7.7E-08 44.1 14.8 174 9-200 25-226 (894)
189 KOG0745 consensus 97.8 3.2E-05 8.2E-10 58.6 4.2 88 24-132 229-331 (564)
190 PRK11331 5-methylcytosine-spec 97.7 0.00091 2.3E-08 47.9 10.6 112 14-132 187-299 (459)
191 TIGR02030 BchI-ChlI magnesium 97.7 8.5E-05 2.2E-09 55.5 5.3 164 1-170 6-213 (340)
192 TIGR02640 gas_vesic_GvpN gas v 97.6 0.00011 2.8E-09 54.6 5.4 114 7-132 10-131 (265)
193 pfam00448 SRP54 SRP54-type pro 97.6 0.00028 7.1E-09 51.7 7.3 137 21-162 1-142 (196)
194 PRK13853 type IV secretion sys 97.6 0.0067 1.7E-07 41.5 14.0 26 17-43 423-448 (789)
195 PRK12377 putative replication 97.6 0.00053 1.3E-08 49.7 8.3 98 21-145 101-205 (248)
196 PRK09183 transposase/IS protei 97.6 0.00017 4.4E-09 53.2 5.7 99 21-146 101-205 (258)
197 KOG1808 consensus 97.6 0.00016 4.2E-09 53.4 5.5 149 5-176 426-597 (1856)
198 KOG0730 consensus 97.6 0.00082 2.1E-08 48.2 8.9 169 3-199 438-635 (693)
199 PRK06526 transposase; Provisio 97.5 0.00031 7.9E-09 51.4 6.5 101 21-146 98-201 (254)
200 PRK08116 hypothetical protein; 97.5 0.00088 2.2E-08 48.0 8.8 114 10-146 97-215 (262)
201 smart00350 MCM minichromosome 97.5 0.00055 1.4E-08 49.5 7.7 131 1-163 205-350 (509)
202 TIGR02880 cbbX_cfxQ CbbX prote 97.5 0.00067 1.7E-08 48.9 8.0 146 22-194 60-224 (284)
203 TIGR00390 hslU heat shock prot 97.5 0.00013 3.4E-09 54.1 4.4 46 1-46 14-72 (463)
204 PRK11545 gntK gluconate kinase 97.5 0.00086 2.2E-08 48.1 8.1 120 17-160 4-128 (177)
205 KOG0652 consensus 97.5 0.0014 3.5E-08 46.6 9.0 167 3-198 175-374 (424)
206 pfam03266 DUF265 Protein of un 97.4 9.1E-05 2.3E-09 55.3 2.7 145 24-171 2-164 (168)
207 PRK08181 transposase; Validate 97.4 0.00049 1.3E-08 49.9 6.3 104 13-146 101-209 (269)
208 KOG0736 consensus 97.3 0.00083 2.1E-08 48.2 6.6 126 3-154 676-829 (953)
209 pfam01695 IstB IstB-like ATP b 97.3 0.00059 1.5E-08 49.3 5.8 99 21-145 47-149 (178)
210 KOG0735 consensus 97.3 0.0013 3.3E-08 46.7 7.3 164 3-199 671-868 (952)
211 KOG0727 consensus 97.3 0.0011 2.8E-08 47.3 6.8 124 20-169 188-330 (408)
212 cd02021 GntK Gluconate kinase 97.2 0.0021 5.3E-08 45.2 7.9 121 24-160 2-122 (150)
213 KOG0741 consensus 97.2 0.0012 3E-08 47.1 6.5 102 23-149 540-653 (744)
214 TIGR01243 CDC48 AAA family ATP 97.2 0.0012 3.1E-08 47.0 6.5 112 20-157 239-363 (980)
215 PRK12724 flagellar biosynthesi 97.2 0.0016 4.2E-08 46.0 6.8 121 23-165 225-364 (432)
216 COG1484 DnaC DNA replication p 97.2 0.0023 5.8E-08 45.0 7.5 98 5-132 89-195 (254)
217 PRK13898 type IV secretion sys 97.2 0.031 7.9E-07 36.6 13.4 89 102-200 638-737 (800)
218 PRK11131 ATP-dependent RNA hel 97.2 0.0029 7.3E-08 44.2 8.0 131 9-149 80-233 (1295)
219 smart00487 DEXDc DEAD-like hel 97.2 0.0013 3.4E-08 46.7 6.3 44 103-146 126-170 (201)
220 PRK13695 putative NTPase; Prov 97.2 0.0005 1.3E-08 49.9 4.1 144 21-171 3-163 (174)
221 PRK11889 flhF flagellar biosyn 97.1 0.0022 5.6E-08 45.1 7.2 119 21-162 241-379 (436)
222 PRK06731 flhF flagellar biosyn 97.1 0.0056 1.4E-07 42.1 9.2 115 19-144 73-195 (270)
223 PRK13873 conjugal transfer ATP 97.1 0.0047 1.2E-07 42.7 8.8 86 103-196 635-733 (815)
224 TIGR02173 cyt_kin_arch cytidyl 97.1 0.00024 6.2E-09 52.2 2.2 46 25-81 4-49 (173)
225 PRK05703 flhF flagellar biosyn 97.1 0.01 2.6E-07 40.2 10.1 117 21-163 210-348 (412)
226 pfam05729 NACHT NACHT domain. 97.1 0.0024 6E-08 44.8 6.8 143 24-177 3-161 (165)
227 KOG0732 consensus 97.1 0.0024 6.1E-08 44.8 6.7 132 3-157 269-427 (1080)
228 PRK09825 idnK D-gluconate kina 97.1 0.00041 1E-08 50.5 2.7 116 21-160 3-123 (176)
229 PRK11664 ATP-dependent RNA hel 97.0 0.0069 1.7E-07 41.4 8.9 129 6-141 8-154 (812)
230 COG1618 Predicted nucleotide k 97.0 0.0063 1.6E-07 41.7 8.4 133 19-162 3-158 (179)
231 PRK06995 flhF flagellar biosyn 97.0 0.0076 1.9E-07 41.1 8.8 60 105-164 253-315 (404)
232 COG1643 HrpA HrpA-like helicas 97.0 0.0027 6.8E-08 44.5 6.5 49 94-142 150-201 (845)
233 PRK06835 DNA replication prote 97.0 0.0054 1.4E-07 42.2 7.9 41 6-46 167-208 (330)
234 COG4178 ABC-type uncharacteriz 97.0 0.0016 4.1E-08 46.1 5.1 51 105-157 532-583 (604)
235 COG1220 HslU ATP-dependent pro 96.9 0.00095 2.4E-08 47.8 3.8 46 1-46 17-75 (444)
236 cd03115 SRP The signal recogni 96.9 0.0039 9.9E-08 43.3 6.9 23 24-46 3-25 (173)
237 KOG0651 consensus 96.9 0.0044 1.1E-07 42.9 7.0 110 19-154 164-289 (388)
238 PRK13900 type IV secretion sys 96.9 0.012 3E-07 39.7 8.9 37 6-45 148-184 (332)
239 pfam09848 DUF2075 Uncharacteri 96.8 0.0012 3.2E-08 46.9 3.6 106 22-141 2-121 (348)
240 pfam05707 Zot Zonular occluden 96.8 0.0017 4.3E-08 45.9 4.1 65 108-172 72-143 (183)
241 PRK12723 flagellar biosynthesi 96.8 0.0087 2.2E-07 40.7 7.6 115 21-161 174-313 (388)
242 PRK13531 regulatory ATPase Rav 96.8 0.0052 1.3E-07 42.3 6.5 141 5-169 26-184 (498)
243 PRK03839 putative kinase; Prov 96.8 0.004 1E-07 43.2 5.8 26 24-49 3-28 (180)
244 KOG0922 consensus 96.7 0.0056 1.4E-07 42.1 6.3 133 9-148 57-209 (674)
245 KOG0729 consensus 96.7 0.0038 9.8E-08 43.3 5.5 126 3-154 181-334 (435)
246 PRK13830 conjugal transfer pro 96.7 0.027 6.8E-07 37.1 9.5 58 17-77 453-511 (818)
247 KOG1051 consensus 96.7 0.016 4.2E-07 38.6 8.4 167 1-197 188-386 (898)
248 KOG0728 consensus 96.6 0.009 2.3E-07 40.6 6.9 128 21-174 181-327 (404)
249 KOG1803 consensus 96.6 0.0026 6.7E-08 44.5 4.2 44 107-158 359-403 (649)
250 cd00046 DEXDc DEAD-like helica 96.6 0.0073 1.9E-07 41.2 6.5 42 104-145 101-143 (144)
251 pfam06309 Torsin Torsin. This 96.6 0.0052 1.3E-07 42.3 5.6 46 1-46 27-78 (127)
252 pfam00270 DEAD DEAD/DEAH box h 96.6 0.019 4.8E-07 38.2 8.5 32 4-42 4-35 (167)
253 cd00464 SK Shikimate kinase (S 96.6 0.011 2.9E-07 39.8 7.2 30 24-53 2-31 (154)
254 TIGR01967 DEAH_box_HrpA ATP-de 96.6 0.011 2.7E-07 40.1 7.1 142 9-168 75-262 (1320)
255 cd01130 VirB11-like_ATPase Typ 96.6 0.028 7.3E-07 36.9 9.2 141 5-171 12-159 (186)
256 PRK07952 DNA replication prote 96.6 0.0034 8.6E-08 43.7 4.4 24 23-46 98-121 (242)
257 PRK04220 2-phosphoglycerate ki 96.6 0.062 1.6E-06 34.4 10.8 135 11-160 82-239 (306)
258 TIGR01448 recD_rel helicase, R 96.6 0.013 3.4E-07 39.3 7.4 134 9-175 357-507 (769)
259 pfam04851 ResIII Type III rest 96.6 0.0097 2.5E-07 40.3 6.6 93 4-144 8-100 (103)
260 PRK06067 flagellar accessory p 96.5 0.012 3.1E-07 39.6 6.9 33 11-44 21-55 (241)
261 PRK13948 shikimate kinase; Pro 96.5 0.013 3.4E-07 39.3 7.1 35 19-53 8-42 (182)
262 COG4088 Predicted nucleotide k 96.5 0.0036 9.1E-08 43.5 4.0 26 23-48 3-28 (261)
263 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.0066 1.7E-07 41.6 5.3 22 22-43 20-41 (235)
264 COG3283 TyrR Transcriptional r 96.4 0.038 9.7E-07 35.9 9.1 181 20-224 226-442 (511)
265 cd03289 ABCC_CFTR2 The CFTR su 96.4 0.019 4.9E-07 38.1 7.6 52 105-161 155-207 (275)
266 PRK11176 lipid transporter ATP 96.4 0.012 3E-07 39.7 6.3 13 334-346 486-498 (581)
267 cd03245 ABCC_bacteriocin_expor 96.4 0.0062 1.6E-07 41.8 4.8 29 22-50 31-59 (220)
268 TIGR03375 type_I_sec_LssB type 96.4 0.015 3.7E-07 39.0 6.7 12 28-39 28-39 (694)
269 cd01121 Sms Sms (bacterial rad 96.4 0.025 6.4E-07 37.3 7.9 36 10-45 70-106 (372)
270 COG1373 Predicted ATPase (AAA+ 96.4 0.088 2.2E-06 33.3 10.5 132 7-172 25-161 (398)
271 PRK00131 aroK shikimate kinase 96.4 0.034 8.7E-07 36.3 8.4 30 24-53 7-36 (175)
272 cd03369 ABCC_NFT1 Domain 2 of 96.3 0.012 2.9E-07 39.8 6.0 24 23-46 36-59 (207)
273 PRK13947 shikimate kinase; Pro 96.3 0.027 6.8E-07 37.1 7.8 30 24-53 4-33 (171)
274 PRK11160 cysteine/glutathione 96.3 0.028 7.2E-07 36.9 7.8 12 334-345 483-494 (575)
275 cd03244 ABCC_MRP_domain2 Domai 96.3 0.017 4.3E-07 38.5 6.6 23 23-45 32-54 (221)
276 pfam07693 KAP_NTPase KAP famil 96.3 0.13 3.2E-06 32.1 11.7 41 6-46 3-45 (301)
277 PRK10790 putative multidrug tr 96.3 0.023 5.8E-07 37.6 7.3 12 334-345 483-494 (593)
278 COG1119 ModF ABC-type molybden 96.3 0.016 4E-07 38.8 6.3 24 21-45 58-81 (257)
279 PRK05057 aroK shikimate kinase 96.3 0.02 5.2E-07 38.0 6.8 30 24-53 7-36 (172)
280 cd03288 ABCC_SUR2 The SUR doma 96.3 0.022 5.5E-07 37.8 7.0 24 23-46 49-72 (257)
281 KOG0478 consensus 96.2 0.0031 7.8E-08 44.0 2.6 146 1-169 431-615 (804)
282 PRK10789 putative multidrug tr 96.2 0.047 1.2E-06 35.3 8.6 13 334-346 458-470 (569)
283 TIGR01447 recD exodeoxyribonuc 96.2 0.026 6.7E-07 37.1 7.3 139 23-178 244-412 (753)
284 PRK09361 radB DNA repair and r 96.2 0.025 6.4E-07 37.3 7.1 35 11-45 12-47 (224)
285 COG0703 AroK Shikimate kinase 96.2 0.026 6.7E-07 37.1 7.2 127 24-179 5-135 (172)
286 KOG0726 consensus 96.2 0.036 9.2E-07 36.1 7.7 135 3-164 189-355 (440)
287 TIGR01313 therm_gnt_kin carboh 96.2 0.041 1E-06 35.7 8.0 121 24-175 1-140 (175)
288 COG3604 FhlA Transcriptional r 96.2 0.033 8.3E-07 36.4 7.5 203 1-223 225-464 (550)
289 PRK13946 shikimate kinase; Pro 96.1 0.037 9.3E-07 36.1 7.7 39 11-53 14-52 (195)
290 PRK13949 shikimate kinase; Pro 96.1 0.026 6.6E-07 37.2 6.8 30 24-53 4-33 (169)
291 TIGR02237 recomb_radB DNA repa 96.1 0.0038 9.7E-08 43.3 2.5 90 15-133 9-100 (223)
292 cd03253 ABCC_ATM1_transporter 96.1 0.016 4.1E-07 38.7 5.6 23 23-45 29-51 (236)
293 PRK08533 flagellar accessory p 96.1 0.046 1.2E-06 35.4 7.9 137 11-151 13-167 (230)
294 PRK11174 cysteine/glutathione 96.1 0.037 9.4E-07 36.1 7.4 15 333-347 491-505 (588)
295 cd03228 ABCC_MRP_Like The MRP 96.1 0.0092 2.4E-07 40.5 4.3 118 22-147 29-156 (171)
296 smart00763 AAA_PrkA PrkA AAA d 96.0 0.014 3.6E-07 39.1 5.1 45 1-45 53-102 (361)
297 cd03248 ABCC_TAP TAP, the Tran 96.0 0.021 5.3E-07 37.9 5.9 23 23-45 42-64 (226)
298 PRK13632 cbiO cobalt transport 96.0 0.066 1.7E-06 34.2 8.4 24 22-45 37-60 (273)
299 PRK13851 type IV secretion sys 96.0 0.068 1.7E-06 34.1 8.5 37 6-45 150-186 (343)
300 TIGR03263 guanyl_kin guanylate 96.0 0.066 1.7E-06 34.2 8.4 22 23-44 3-24 (180)
301 TIGR00959 ffh signal recogniti 96.0 0.017 4.2E-07 38.6 5.2 28 18-45 99-126 (439)
302 cd03252 ABCC_Hemolysin The ABC 96.0 0.028 7.1E-07 36.9 6.4 28 23-50 30-57 (237)
303 PRK09435 arginine/ornithine tr 96.0 0.039 9.8E-07 35.9 7.1 40 7-46 35-74 (325)
304 KOG2543 consensus 95.9 0.041 1.1E-06 35.7 7.1 161 3-175 10-190 (438)
305 cd03247 ABCC_cytochrome_bd The 95.9 0.012 3.1E-07 39.6 4.3 30 22-51 29-58 (178)
306 KOG1805 consensus 95.9 0.014 3.6E-07 39.1 4.6 141 8-159 675-842 (1100)
307 COG1116 TauB ABC-type nitrate/ 95.9 0.018 4.6E-07 38.4 5.2 27 24-50 32-58 (248)
308 KOG4658 consensus 95.9 0.15 3.8E-06 31.6 9.9 175 2-209 161-363 (889)
309 PRK13539 cytochrome c biogenes 95.9 0.017 4.4E-07 38.5 5.1 24 22-45 29-52 (206)
310 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.9 0.03 7.7E-07 36.7 6.2 23 23-45 31-53 (238)
311 cd03246 ABCC_Protease_Secretio 95.9 0.013 3.4E-07 39.3 4.4 116 23-147 30-157 (173)
312 cd03223 ABCD_peroxisomal_ALDP 95.9 0.0069 1.8E-07 41.4 2.9 106 23-147 29-149 (166)
313 PHA00350 putative assembly pro 95.9 0.016 4.2E-07 38.7 4.8 126 24-160 4-159 (402)
314 PRK13657 cyclic beta-1,2-gluca 95.8 0.031 7.8E-07 36.6 6.0 15 333-347 477-491 (585)
315 PRK11823 DNA repair protein Ra 95.8 0.064 1.6E-06 34.3 7.6 35 11-45 79-114 (454)
316 cd01120 RecA-like_NTPases RecA 95.8 0.053 1.4E-06 34.9 7.2 23 24-46 2-24 (165)
317 PRK12727 flagellar biosynthesi 95.8 0.056 1.4E-06 34.7 7.3 59 104-162 424-484 (557)
318 pfam06414 Zeta_toxin Zeta toxi 95.7 0.022 5.6E-07 37.7 5.0 125 19-158 10-140 (191)
319 COG2274 SunT ABC-type bacterio 95.7 0.036 9.1E-07 36.2 6.1 15 108-122 97-111 (709)
320 PRK09302 circadian clock prote 95.7 0.034 8.6E-07 36.3 5.9 28 15-42 16-45 (501)
321 PRK13544 consensus 95.6 0.016 4.2E-07 38.7 4.1 23 23-45 29-51 (208)
322 cd01393 recA_like RecA is a b 95.6 0.051 1.3E-06 35.0 6.6 27 18-44 14-42 (226)
323 PRK13891 conjugal transfer pro 95.6 0.24 6.1E-06 30.1 10.5 27 17-44 485-511 (852)
324 pfam08542 Rep_fac_C Replicatio 95.6 0.2 5.1E-06 30.7 9.6 88 229-344 1-89 (90)
325 cd00550 ArsA_ATPase Oxyanion-t 95.6 0.06 1.5E-06 34.5 7.0 22 24-45 3-24 (254)
326 cd00984 DnaB_C DnaB helicase C 95.6 0.048 1.2E-06 35.2 6.4 26 20-45 12-37 (242)
327 TIGR01618 phage_P_loop phage n 95.6 0.005 1.3E-07 42.5 1.3 81 19-118 10-97 (229)
328 COG0529 CysC Adenylylsulfate k 95.6 0.07 1.8E-06 34.0 7.2 122 4-140 6-127 (197)
329 cd04155 Arl3 Arl3 subfamily. 95.6 0.11 2.7E-06 32.7 8.1 135 8-174 2-140 (173)
330 PRK10867 signal recognition pa 95.6 0.15 3.8E-06 31.5 8.9 123 19-149 98-229 (453)
331 PRK03846 adenylylsulfate kinas 95.6 0.009 2.3E-07 40.6 2.6 44 3-46 6-49 (198)
332 PRK07414 cob(I)yrinic acid a,c 95.6 0.15 3.7E-06 31.6 8.7 121 24-149 25-162 (178)
333 COG3284 AcoR Transcriptional a 95.6 0.019 4.7E-07 38.3 4.1 189 15-222 332-548 (606)
334 KOG0477 consensus 95.6 0.036 9.1E-07 36.1 5.6 128 1-161 451-594 (854)
335 pfam06745 KaiC KaiC. This fami 95.5 0.068 1.7E-06 34.1 6.9 22 22-43 20-41 (231)
336 PRK13540 cytochrome c biogenes 95.5 0.035 8.8E-07 36.3 5.4 23 23-45 29-51 (200)
337 cd03251 ABCC_MsbA MsbA is an e 95.5 0.069 1.8E-06 34.1 6.9 23 23-45 30-52 (234)
338 pfam02562 PhoH PhoH-like prote 95.5 0.015 3.9E-07 38.9 3.6 129 3-145 8-155 (205)
339 COG1936 Predicted nucleotide k 95.5 0.051 1.3E-06 35.0 6.2 22 24-46 3-24 (180)
340 PRK10416 cell division protein 95.5 0.11 2.7E-06 32.6 7.8 124 17-148 291-428 (499)
341 pfam03308 ArgK ArgK protein. T 95.5 0.068 1.7E-06 34.1 6.8 42 5-46 13-54 (267)
342 TIGR01842 type_I_sec_PrtD type 95.5 0.031 7.9E-07 36.6 5.0 120 22-148 357-528 (556)
343 cd03254 ABCC_Glucan_exporter_l 95.5 0.021 5.4E-07 37.8 4.2 27 22-48 30-56 (229)
344 PRK00300 gmk guanylate kinase; 95.5 0.12 3E-06 32.3 8.0 24 21-44 7-30 (208)
345 pfam00437 GSPII_E Type II/IV s 95.4 0.03 7.6E-07 36.7 4.7 37 7-46 128-164 (283)
346 COG1419 FlhF Flagellar GTP-bin 95.4 0.08 2E-06 33.6 6.9 121 21-164 203-342 (407)
347 cd00267 ABC_ATPase ABC (ATP-bi 95.4 0.045 1.1E-06 35.4 5.6 114 22-150 26-144 (157)
348 pfam01745 IPT Isopentenyl tran 95.4 0.032 8.1E-07 36.5 4.8 104 23-157 3-111 (232)
349 PRK00771 signal recognition pa 95.4 0.17 4.3E-06 31.2 8.5 126 20-155 96-229 (433)
350 pfam01057 Parvo_NS1 Parvovirus 95.3 0.087 2.2E-06 33.3 6.9 24 22-45 114-137 (271)
351 COG1061 SSL2 DNA or RNA helica 95.3 0.063 1.6E-06 34.3 6.2 131 4-146 41-184 (442)
352 pfam01580 FtsK_SpoIIIE FtsK/Sp 95.3 0.093 2.4E-06 33.1 7.0 27 19-46 37-63 (202)
353 cd03114 ArgK-like The function 95.3 0.065 1.7E-06 34.2 6.1 21 26-46 4-24 (148)
354 pfam05272 VirE Virulence-assoc 95.2 0.056 1.4E-06 34.7 5.7 115 13-156 43-160 (198)
355 PRK06921 hypothetical protein; 95.2 0.036 9.1E-07 36.2 4.6 40 7-46 101-141 (265)
356 COG3829 RocR Transcriptional r 95.2 0.14 3.5E-06 31.8 7.6 199 1-216 247-480 (560)
357 PRK11448 hsdR type I restricti 95.2 0.1 2.6E-06 32.8 6.9 138 4-147 421-597 (1126)
358 pfam09115 DNApol3-delta_C DNA 95.2 0.33 8.5E-06 29.0 12.8 104 236-347 12-117 (119)
359 cd01428 ADK Adenylate kinase ( 95.1 0.015 3.7E-07 39.0 2.5 26 24-49 2-27 (194)
360 cd03226 ABC_cobalt_CbiO_domain 95.1 0.061 1.6E-06 34.4 5.6 23 23-45 28-50 (205)
361 TIGR00630 uvra excinuclease AB 95.1 0.027 6.8E-07 37.1 3.7 99 23-145 24-152 (956)
362 cd03290 ABCC_SUR1_N The SUR do 95.0 0.091 2.3E-06 33.2 6.3 23 23-45 29-51 (218)
363 PRK10584 putative ABC transpor 95.0 0.046 1.2E-06 35.3 4.8 22 23-44 38-59 (228)
364 COG1485 Predicted ATPase [Gene 95.0 0.14 3.6E-06 31.7 7.2 126 20-165 64-204 (367)
365 PRK13764 ATPase; Provisional 95.0 0.034 8.6E-07 36.3 4.0 34 11-46 251-284 (605)
366 cd03231 ABC_CcmA_heme_exporter 95.0 0.081 2.1E-06 33.5 5.9 24 21-44 26-49 (201)
367 pfam03796 DnaB_C DnaB-like hel 95.0 0.23 5.8E-06 30.2 8.2 27 19-45 17-43 (186)
368 cd03222 ABC_RNaseL_inhibitor T 95.0 0.029 7.5E-07 36.8 3.6 104 23-147 27-133 (177)
369 PRK03731 aroL shikimate kinase 94.9 0.019 4.8E-07 38.2 2.6 32 22-53 3-34 (172)
370 TIGR02858 spore_III_AA stage I 94.9 0.031 7.9E-07 36.6 3.7 36 9-45 111-147 (282)
371 COG0468 RecA RecA/RadA recombi 94.9 0.15 3.9E-06 31.5 7.1 87 26-118 65-153 (279)
372 cd01122 GP4d_helicase GP4d_hel 94.9 0.25 6.4E-06 29.9 8.2 37 9-45 18-54 (271)
373 PRK10536 hypothetical protein; 94.9 0.049 1.3E-06 35.1 4.6 123 9-145 65-212 (262)
374 pfam00910 RNA_helicase RNA hel 94.9 0.018 4.6E-07 38.3 2.4 24 25-48 2-25 (105)
375 KOG1533 consensus 94.8 0.12 3.1E-06 32.2 6.5 37 118-156 112-155 (290)
376 PRK09270 frcK putative fructos 94.8 0.02 5.1E-07 38.0 2.4 27 23-49 36-62 (230)
377 KOG2228 consensus 94.8 0.064 1.6E-06 34.3 5.0 166 4-178 33-219 (408)
378 COG1674 FtsK DNA segregation A 94.8 0.19 4.7E-06 30.9 7.3 147 18-169 528-709 (858)
379 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.8 0.068 1.7E-06 34.1 5.1 24 22-45 31-54 (218)
380 PRK10070 glycine betaine trans 94.8 0.072 1.8E-06 33.9 5.2 24 22-45 55-78 (400)
381 cd02020 CMPK Cytidine monophos 94.8 0.022 5.5E-07 37.8 2.5 86 26-143 4-91 (147)
382 COG1241 MCM2 Predicted ATPase 94.8 0.078 2E-06 33.7 5.4 128 1-160 288-430 (682)
383 cd03227 ABC_Class2 ABC-type Cl 94.7 0.093 2.4E-06 33.1 5.7 110 23-147 23-142 (162)
384 TIGR01193 bacteriocin_ABC ABC- 94.7 0.074 1.9E-06 33.8 5.2 23 23-45 502-524 (710)
385 COG4650 RtcR Sigma54-dependent 94.7 0.2 5.1E-06 30.7 7.3 111 8-133 197-309 (531)
386 PRK02496 adk adenylate kinase; 94.7 0.022 5.7E-07 37.7 2.5 26 24-49 4-29 (185)
387 cd03301 ABC_MalK_N The N-termi 94.7 0.039 9.9E-07 35.9 3.6 22 23-44 28-49 (213)
388 TIGR00455 apsK adenylylsulfate 94.7 0.023 5.9E-07 37.5 2.5 44 4-47 2-45 (187)
389 cd03260 ABC_PstB_phosphate_tra 94.6 0.13 3.2E-06 32.1 6.1 24 23-46 28-51 (227)
390 PRK05506 bifunctional sulfate 94.6 0.037 9.5E-07 36.0 3.4 34 12-45 434-467 (613)
391 pfam01583 APS_kinase Adenylyls 94.6 0.18 4.5E-06 31.1 6.8 28 21-48 2-29 (157)
392 PRK13768 GTPase; Provisional 94.6 0.03 7.6E-07 36.7 2.9 28 21-48 2-29 (253)
393 PRK08118 topology modulation p 94.5 0.029 7.3E-07 36.9 2.7 29 24-52 4-32 (167)
394 TIGR03608 L_ocin_972_ABC putat 94.5 0.088 2.2E-06 33.3 5.1 20 23-42 26-45 (206)
395 KOG0925 consensus 94.5 0.23 5.8E-06 30.2 7.2 113 20-142 61-198 (699)
396 pfam08298 AAA_PrkA PrkA AAA do 94.5 0.078 2E-06 33.7 4.8 195 2-249 61-263 (358)
397 pfam08423 Rad51 Rad51. Rad51 i 94.4 0.07 1.8E-06 34.0 4.5 20 24-43 46-65 (261)
398 TIGR02533 type_II_gspE general 94.4 0.073 1.9E-06 33.9 4.6 109 5-131 231-360 (495)
399 PRK08154 anaerobic benzoate ca 94.4 0.28 7.1E-06 29.6 7.5 46 6-52 115-164 (304)
400 PRK11629 lolD lipoprotein tran 94.4 0.13 3.3E-06 32.1 5.8 21 23-43 37-57 (233)
401 COG0563 Adk Adenylate kinase a 94.4 0.028 7E-07 37.0 2.3 27 24-50 3-29 (178)
402 pfam02367 UPF0079 Uncharacteri 94.4 0.061 1.6E-06 34.4 4.1 95 9-118 6-100 (123)
403 pfam05872 DUF853 Bacterial pro 94.4 0.2 5.2E-06 30.6 6.7 91 107-199 258-357 (504)
404 PRK00279 adk adenylate kinase; 94.3 0.03 7.7E-07 36.7 2.5 26 24-49 3-28 (215)
405 TIGR01420 pilT_fam twitching m 94.3 0.036 9.1E-07 36.2 2.8 37 10-51 118-154 (350)
406 cd03216 ABC_Carb_Monos_I This 94.3 0.11 2.9E-06 32.4 5.4 111 23-149 28-145 (163)
407 COG1102 Cmk Cytidylate kinase 94.3 0.026 6.7E-07 37.1 2.1 46 25-80 4-49 (179)
408 PRK08939 primosomal protein Dn 94.3 0.08 2E-06 33.6 4.6 13 120-132 138-150 (306)
409 PRK04328 hypothetical protein; 94.3 0.035 9E-07 36.2 2.7 33 11-44 13-47 (250)
410 pfam02572 CobA_CobO_BtuR ATP:c 94.3 0.41 1E-05 28.4 8.2 118 23-146 6-139 (172)
411 COG0552 FtsY Signal recognitio 94.3 0.42 1.1E-05 28.3 8.2 29 18-46 136-164 (340)
412 PRK13542 consensus 94.3 0.18 4.5E-06 31.1 6.2 25 21-45 44-68 (224)
413 TIGR00750 lao LAO/AO transport 94.3 0.11 2.7E-06 32.6 5.1 41 4-45 21-62 (333)
414 PTZ00088 adenylate kinase 1; P 94.3 0.033 8.5E-07 36.4 2.5 26 24-49 3-28 (225)
415 PRK09493 glnQ glutamine ABC tr 94.2 0.22 5.7E-06 30.3 6.8 23 23-45 29-51 (240)
416 PRK07261 topology modulation p 94.2 0.036 9.2E-07 36.1 2.7 28 24-51 3-30 (171)
417 cd04154 Arl2 Arl2 subfamily. 94.2 0.55 1.4E-05 27.4 9.5 136 10-175 4-141 (173)
418 PRK13541 cytochrome c biogenes 94.2 0.063 1.6E-06 34.3 3.9 24 22-45 27-50 (195)
419 COG1203 CRISPR-associated heli 94.2 0.27 6.8E-06 29.7 7.1 58 108-165 340-400 (733)
420 cd03264 ABC_drug_resistance_li 94.2 0.12 3E-06 32.4 5.2 28 14-45 22-49 (211)
421 cd04162 Arl9_Arfrp2_like Arl9/ 94.2 0.13 3.2E-06 32.1 5.4 121 24-174 2-124 (164)
422 cd03235 ABC_Metallic_Cations A 94.2 0.075 1.9E-06 33.8 4.2 23 23-45 27-49 (213)
423 TIGR01351 adk adenylate kinase 94.1 0.034 8.8E-07 36.3 2.4 130 24-167 2-154 (232)
424 PRK00625 shikimate kinase; Pro 94.1 0.039 1E-06 35.8 2.7 30 24-53 3-32 (173)
425 PRK09302 circadian clock prote 94.1 0.032 8.3E-07 36.5 2.3 25 21-45 266-290 (501)
426 PRK06696 uridine kinase; Valid 94.1 0.099 2.5E-06 32.9 4.8 44 5-48 8-53 (227)
427 cd03239 ABC_SMC_head The struc 94.1 0.28 7.2E-06 29.5 7.1 41 108-148 118-160 (178)
428 KOG0923 consensus 94.1 0.19 4.8E-06 30.9 6.1 110 9-132 271-406 (902)
429 COG1066 Sms Predicted ATP-depe 94.1 0.5 1.3E-05 27.7 8.3 36 10-45 81-117 (456)
430 PRK13538 cytochrome c biogenes 94.1 0.17 4.2E-06 31.2 5.8 24 22-45 28-51 (204)
431 cd03263 ABC_subfamily_A The AB 94.1 0.072 1.8E-06 33.9 4.0 23 23-45 30-52 (220)
432 COG0324 MiaA tRNA delta(2)-iso 94.1 0.046 1.2E-06 35.4 2.9 35 20-54 2-36 (308)
433 PRK00091 miaA tRNA delta(2)-is 94.0 0.04 1E-06 35.8 2.6 29 21-49 4-32 (304)
434 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.0 0.066 1.7E-06 34.2 3.7 102 22-148 27-129 (144)
435 COG2874 FlaH Predicted ATPases 94.0 0.45 1.2E-05 28.0 7.9 141 18-160 23-185 (235)
436 cd00268 DEADc DEAD-box helicas 94.0 0.61 1.6E-05 27.1 9.5 15 23-37 38-52 (203)
437 pfam02374 ArsA_ATPase Anion-tr 94.0 0.055 1.4E-06 34.8 3.2 22 24-45 4-25 (304)
438 KOG3347 consensus 94.0 0.039 1E-06 35.9 2.4 28 19-47 6-33 (176)
439 pfam05970 DUF889 PIF1 helicase 93.9 0.097 2.5E-06 32.9 4.4 46 106-152 74-127 (418)
440 TIGR03575 selen_PSTK_euk L-ser 93.9 0.041 1E-06 35.7 2.4 25 25-49 3-27 (340)
441 TIGR03522 GldA_ABC_ATP gliding 93.9 0.23 5.9E-06 30.2 6.3 46 103-148 148-194 (301)
442 cd00561 CobA_CobO_BtuR ATP:cor 93.9 0.56 1.4E-05 27.3 8.2 118 24-147 6-139 (159)
443 COG3265 GntK Gluconate kinase 93.9 0.47 1.2E-05 27.9 7.8 114 28-160 2-115 (161)
444 cd01124 KaiC KaiC is a circadi 93.9 0.032 8.2E-07 36.5 1.8 20 25-44 3-22 (187)
445 PRK00023 cmk cytidylate kinase 93.8 0.045 1.2E-06 35.4 2.5 27 25-51 8-34 (225)
446 PRK05541 adenylylsulfate kinas 93.8 0.059 1.5E-06 34.6 3.0 28 20-47 6-33 (176)
447 PRK13894 conjugal transfer ATP 93.7 0.11 2.7E-06 32.6 4.3 37 6-45 137-173 (320)
448 cd03292 ABC_FtsE_transporter F 93.7 0.17 4.3E-06 31.2 5.3 22 23-44 29-50 (214)
449 PRK13833 conjugal transfer pro 93.7 0.11 2.9E-06 32.5 4.4 109 6-137 132-243 (323)
450 cd03229 ABC_Class3 This class 93.7 0.1 2.7E-06 32.7 4.2 23 23-45 28-50 (178)
451 PRK13634 cbiO cobalt transport 93.6 0.32 8.1E-06 29.2 6.6 24 22-45 21-44 (276)
452 PRK07263 consensus 93.6 0.21 5.3E-06 30.5 5.6 25 21-45 203-227 (453)
453 cd03256 ABC_PhnC_transporter A 93.6 0.17 4.4E-06 31.1 5.2 22 24-45 30-51 (241)
454 COG0572 Udk Uridine kinase [Nu 93.6 0.17 4.3E-06 31.2 5.1 25 24-48 11-35 (218)
455 COG1703 ArgK Putative periplas 93.6 0.71 1.8E-05 26.6 9.7 102 8-115 38-152 (323)
456 PRK09544 znuC high-affinity zi 93.6 0.13 3.4E-06 31.9 4.6 23 23-45 32-54 (251)
457 PRK13766 Hef nuclease; Provisi 93.6 0.48 1.2E-05 27.8 7.4 159 8-175 21-206 (764)
458 PRK11147 ABC transporter ATPas 93.6 0.13 3.4E-06 32.0 4.5 55 105-162 173-228 (632)
459 cd03214 ABC_Iron-Siderophores_ 93.5 0.082 2.1E-06 33.5 3.4 23 23-45 27-49 (180)
460 cd04161 Arl2l1_Arl13_like Arl2 93.5 0.34 8.6E-06 29.0 6.5 123 24-175 2-126 (167)
461 PRK11819 putative ABC transpor 93.5 0.18 4.6E-06 31.0 5.1 40 105-146 180-220 (556)
462 TIGR00954 3a01203 Peroxysomal 93.5 0.047 1.2E-06 35.2 2.1 24 21-45 557-580 (788)
463 KOG0952 consensus 93.4 0.11 2.9E-06 32.4 4.0 36 13-48 112-154 (1230)
464 cd03217 ABC_FeS_Assembly ABC-t 93.4 0.22 5.6E-06 30.3 5.4 21 23-43 28-48 (200)
465 COG2842 Uncharacterized ATPase 93.4 0.44 1.1E-05 28.1 7.0 115 8-140 84-199 (297)
466 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 93.4 0.093 2.4E-06 33.1 3.5 23 23-45 50-72 (224)
467 cd02027 APSK Adenosine 5'-phos 93.3 0.29 7.5E-06 29.4 6.0 23 24-46 2-24 (149)
468 COG1855 ATPase (PilT family) [ 93.3 0.056 1.4E-06 34.7 2.3 27 22-48 264-290 (604)
469 pfam00625 Guanylate_kin Guanyl 93.3 0.28 7E-06 29.6 5.8 22 24-45 4-25 (182)
470 TIGR03574 selen_PSTK L-seryl-t 93.3 0.064 1.6E-06 34.3 2.6 23 24-46 2-24 (249)
471 PRK11192 ATP-dependent RNA hel 93.2 0.66 1.7E-05 26.8 7.7 51 106-156 149-201 (417)
472 PRK05595 replicative DNA helic 93.2 0.29 7.5E-06 29.4 5.9 24 21-44 201-224 (444)
473 PRK10636 putative ABC transpor 93.2 0.19 4.9E-06 30.8 4.9 50 105-157 166-216 (638)
474 pfam00406 ADK Adenylate kinase 93.2 0.13 3.3E-06 32.0 4.0 23 26-48 1-23 (186)
475 COG2074 2-phosphoglycerate kin 93.1 0.13 3.4E-06 32.0 3.9 38 10-47 78-115 (299)
476 cd01131 PilT Pilus retraction 93.1 0.2 5.1E-06 30.6 4.9 113 23-154 3-116 (198)
477 PRK04301 radA DNA repair and r 93.1 0.27 7E-06 29.6 5.5 24 25-50 107-130 (318)
478 COG4619 ABC-type uncharacteriz 93.1 0.37 9.5E-06 28.6 6.2 24 21-44 29-52 (223)
479 pfam09439 SRPRB Signal recogni 93.0 0.39 9.8E-06 28.5 6.2 129 22-176 4-139 (181)
480 COG0802 Predicted ATPase or ki 93.0 0.26 6.7E-06 29.8 5.4 54 20-80 24-81 (149)
481 COG1134 TagH ABC-type polysacc 93.0 0.23 5.7E-06 30.3 5.0 127 23-158 55-215 (249)
482 PHA02244 ATPase-like protein 93.0 0.1 2.7E-06 32.7 3.3 31 14-46 114-144 (383)
483 PRK10646 putative ATPase; Prov 93.0 0.27 6.9E-06 29.7 5.4 101 6-118 12-113 (153)
484 PRK13546 teichoic acids export 93.0 0.081 2.1E-06 33.6 2.7 23 23-45 52-74 (264)
485 KOG0924 consensus 93.0 0.46 1.2E-05 28.0 6.5 121 9-141 362-505 (1042)
486 TIGR00929 VirB4_CagE type IV s 92.9 0.25 6.3E-06 29.9 5.1 98 94-199 741-854 (931)
487 PRK12338 hypothetical protein; 92.9 0.15 3.8E-06 31.6 4.0 117 19-151 2-147 (320)
488 TIGR00064 ftsY signal recognit 92.9 0.29 7.3E-06 29.5 5.4 29 17-45 78-106 (284)
489 PRK12337 2-phosphoglycerate ki 92.9 0.26 6.7E-06 29.8 5.2 36 11-46 252-287 (492)
490 KOG3354 consensus 92.9 0.89 2.3E-05 25.8 8.4 128 18-160 9-142 (191)
491 KOG0354 consensus 92.9 0.9 2.3E-05 25.8 8.0 146 15-161 70-236 (746)
492 PRK00889 adenylylsulfate kinas 92.8 0.095 2.4E-06 33.0 2.9 26 21-46 4-29 (175)
493 PRK08506 replicative DNA helic 92.8 0.32 8.2E-06 29.1 5.6 25 21-45 193-217 (473)
494 PRK05748 replicative DNA helic 92.7 0.34 8.7E-06 28.9 5.6 24 21-44 203-226 (448)
495 cd01125 repA Hexameric Replica 92.7 0.94 2.4E-05 25.7 7.9 25 25-49 5-29 (239)
496 TIGR00631 uvrb excinuclease AB 92.7 0.16 4E-06 31.4 3.8 39 4-44 14-53 (667)
497 COG5635 Predicted NTPase (NACH 92.6 0.54 1.4E-05 27.4 6.5 147 21-175 223-375 (824)
498 PRK08840 replicative DNA helic 92.6 0.63 1.6E-05 27.0 6.8 24 21-44 217-240 (464)
499 PRK13633 cobalt transporter AT 92.5 0.39 9.9E-06 28.5 5.7 23 23-45 39-61 (281)
500 cd03238 ABC_UvrA The excision 92.5 0.48 1.2E-05 27.9 6.2 117 24-147 24-150 (176)
No 1
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=100.00 E-value=0 Score=812.56 Aligned_cols=341 Identities=45% Similarity=0.710 Sum_probs=332.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
||||++|+++|+|++.+|||+|||||+||+||||||+||+|||+|||. +... +|||.|.+|+.|..|+|+||+||
T Consensus 16 ~~GQ~~iv~tL~NAi~~~ri~HAYLF~GpRGtGKTS~ARIfAKaLNC~-~~~~----~PCn~C~~C~~i~~g~~~DviEi 90 (363)
T TIGR02397 16 VIGQEHIVKTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ-GPDG----EPCNECESCKEINSGSSLDVIEI 90 (363)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC-CCCC----CCCCCCCHHHHHHCCCCCCEEEE
T ss_conf 235179999999999718966234502859976355899999986588-7877----87777502277652898666886
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4 81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF 160 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~ 160 (369)
|||||+|||+||+|++++.|+|..|+|||||||||||||++|||||||||||||+||+|||+||+|+|||+||+||||+|
T Consensus 91 DAASN~gVD~IR~l~e~v~y~P~~~kYKvYIIDEVHMLS~~AFNALLKTLEEPP~hV~FIlATTE~~KiP~TIlSRCQrF 170 (363)
T TIGR02397 91 DAASNNGVDDIRELRENVKYAPSKGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRF 170 (363)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCCCCEEECEEE
T ss_conf 48656878899999873036875544335887323028656899987652279876288873487112055402100031
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHC---CCCHHHHHHCCCCCCHHHHH
Q ss_conf 102454001356787643101345625664456531676420011000111000000---12103220001356777778
Q 537021.9.peg.4 161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCND---KIVTSSVRLMLALADRNRIM 237 (369)
Q Consensus 161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~---~i~~e~v~~llg~~~~~~i~ 237 (369)
+|++++.++|.++|++|+++||+++|++||..||+.|+||||||+|+|||+++++++ .|+.++|.+++|.++.+.++
T Consensus 171 ~Fk~i~~~~i~~~L~~I~~~E~I~~e~~AL~~IA~~a~GS~RDAlsllDQ~~~~~~~~DG~i~~~~v~~~lGl~~~~~l~ 250 (363)
T TIGR02397 171 DFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSMRDALSLLDQAISFGNGSDGKITYEDVNEMLGLVDEEKLI 250 (363)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHH
T ss_conf 26789989999999999987088317789999999628961068899999998268878865789999983577789999
Q ss_pred HHHHHHHC-CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC---CCCCCCCCHHHHHHHHHHHHHCCHHH
Q ss_conf 88876301-363346788765430476213578777534899999974574---12234499889999999986299899
Q 537021.9.peg.4 238 DLFGYLIK-GDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPE---MADTLLYSEAENARALQYSKEVSITF 313 (369)
Q Consensus 238 ~Ll~ai~~-~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~---~~~~~~~~~~e~~~i~~~a~~i~~~~ 313 (369)
++++++.+ +|..+++..++++.+.|.||..|+.+|+.++|++++++..++ ....+.+...+...+...+..++.++
T Consensus 251 ~l~~~~~~~~d~~~~l~~~~~~~~~G~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 330 (363)
T TIGR02397 251 ELLEAILNKRDTEEALKILDEILESGVDPEKFLEDLIEFLRDLLLIKKTPDEIEASNLLEILESEQEFLKELAQKLSLEF 330 (363)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 99999753876889999999998728889899999999999988644046520122443222578889999996169789
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 999999999999983027888999999999995
Q 537021.9.peg.4 314 LSRFWQMILKGISEIEGFSRPMEAVEMVLIRLA 346 (369)
Q Consensus 314 L~~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~ 346 (369)
+.++++.+.++..+++.+.+|+.+|||+|+|++
T Consensus 331 ~~~~~~~l~~~~~~~~~~~~~~~~lE~~l~~~~ 363 (363)
T TIGR02397 331 LLRLIDILLEALKDLKFSNNPRIALEMTLLRLL 363 (363)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf 999999998778732000015899999999849
No 2
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=753.54 Aligned_cols=365 Identities=59% Similarity=0.990 Sum_probs=356.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf 928489999999999828767062010787988889999999996146877-7886658789997799997798778222
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAH-IDVPTVEFEGFGEHCQAIIRGNHVDVVE 79 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~-~~~~~~~~c~~c~~c~~i~~~~~~d~~e 79 (369)
+|||++++++|+|++..||++|||||+||+|+||||+||+||++|||+.+. .++|+.+|||.|.+|+.|..|+|+||+|
T Consensus 25 ~~gq~~~~~~l~~~~~~~~~~~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e 104 (600)
T PRK09111 25 LIGQEAMVRTLRNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPCGVGEHCQAIMEGRHVDVIE 104 (600)
T ss_pred HCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEE
T ss_conf 33859999999999972984204764578987899999999999669887666899889899886589886689987588
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf 45332233455566555445654204652377511566480016789999972122111466506754330356754333
Q 537021.9.peg.4 80 LDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQR 159 (369)
Q Consensus 80 ~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~ 159 (369)
||||||+|||+||+|++++.|+|..|+||||||||+||||.+|+|||||||||||+||+|||+||+|+|||+||+||||+
T Consensus 105 ~daas~~~v~~~r~~~~~~~~~p~~~~~kv~iidevhmls~~afnallktleepp~~~~fi~att~~~k~p~ti~src~~ 184 (600)
T PRK09111 105 MDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQR 184 (600)
T ss_pred EECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCHHHHHHHHE
T ss_conf 51554578889999998605388777546999600110579999999987625986549999628534375899854412
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHH
Q ss_conf 21024540013567876431013456256644565316764200110001110000001210322000135677777888
Q 537021.9.peg.4 160 FDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDL 239 (369)
Q Consensus 160 ~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~L 239 (369)
|+|++++.++|..+|.+|+.+|+++++++++.+||+.|+||||||||+|||+++++++.++.+.|.++||..++..+++|
T Consensus 185 f~~~~~~~~~~~~~l~~i~~~e~~~~~~~al~~ia~~a~GS~RDaLSlLDQai~~~~~~i~~~~v~~mLGl~d~~~i~~L 264 (600)
T PRK09111 185 FDLRRIEAEVLAAHLARIAEKEGVEVEPDALALIARAAEGSVRDGLSLLDQAIAHGAGEVTAEQVRDMLGLADRARVIDL 264 (600)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHH
T ss_conf 01057999999999999998607686677999999974898421899999999727987569999998688767789999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 87630136334678876543047621357877753489999997457412234499889999999986299899999999
Q 537021.9.peg.4 240 FGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQ 319 (369)
Q Consensus 240 l~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq 319 (369)
+++++.||...++..++++++.|.||..++++|+.++|.+.++|..+...+...+++++...+..+|+.++...|.++||
T Consensus 265 l~~i~~Gd~~~aL~~~~~l~~~G~Dp~~iL~dLLeilh~is~~k~~~~~~~~~~lse~E~~~i~~LA~~ls~~~L~~~wQ 344 (600)
T PRK09111 265 FEALMRGDVAAALAEFRAQYDAGADPVVVLRDLAEFVHLVTRLKIVPDAAEDPSLSEDERTRGAEFAKKLSMRVLSRMWQ 344 (600)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99998558688999999999859899999999999999999997467510145689999999999985089999999999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 9999999830278889999999999953304999899999765555
Q 537021.9.peg.4 320 MILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSPEEIARYIVEEK 365 (369)
Q Consensus 320 ~l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~~~s~~~~~~~~~~~~ 365 (369)
+++++..+++.++||++++||+|+||||+..+|+|+++++++.+..
T Consensus 345 ilLkg~~El~~a~~p~~alEM~LiRL~~~~~lP~peELLKkL~~~~ 390 (600)
T PRK09111 345 MLLKGIAEVQGAPRPLAAAEMVLIRLAHAADLPTPDEAIRRLEEGP 390 (600)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
T ss_conf 9998999973089835869999999997233899899999986157
No 3
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=724.83 Aligned_cols=361 Identities=36% Similarity=0.525 Sum_probs=349.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
||||++++++|+|++.+||+||||||+||+|+||||+||+||++|||.++.. .+|||.|.+|+.|..|+++||+|+
T Consensus 18 vvgQ~~v~~~L~n~i~~~~i~hayLf~GprG~GKTs~Ari~akalnc~~~~~----~~pC~~C~~C~~i~~g~~~Dv~Ei 93 (541)
T PRK05563 18 VVGQEHITTTLKNQIINNRIAHAYLFCGTRGTGKTSTAKIFAKAVNCLNPQD----GEPCNECEICKKINEGLLMDVIEI 93 (541)
T ss_pred HCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHHCCCCCCEEEE
T ss_conf 2484999999999998499320453038799589999999999957999888----985751488999856898873662
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4 81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF 160 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~ 160 (369)
|||||+|||+||++++++.|.|.+|+||||||||+||||.+|||||||||||||+||+|||+||+|+|+|+||+||||+|
T Consensus 94 daas~~gvd~iR~~~~~~~~~p~~~~~Kv~IiDEvhmls~~a~nallKtlEePp~~~~Filatte~~ki~~tI~SRcq~f 173 (541)
T PRK05563 94 DAASNNGVDDIREIIENVKYPPQEGKYKVYIMDEVHMLSQGAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRF 173 (541)
T ss_pred CCCCCCCHHHHHHHHHHCEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHEEEE
T ss_conf 44444788999999976104876787059999772338999999999998548777569997698442745567421357
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf 10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4 161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240 (369)
Q Consensus 161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll 240 (369)
+|++++.++|..+|++|+++||++++++++.+||+.|+||||||+|+|||++++++++++.++|..++|.++.+.+++++
T Consensus 174 ~f~~i~~~~i~~~L~~I~~~E~i~~~~~al~lIa~~s~GsmRDAlslLdQ~is~~~~~it~~~v~~~lG~~~~~~l~~l~ 253 (541)
T PRK05563 174 DFKRIKVKDIFKRLRKIVEEQGIFADDKSLNLIARMSDGAMRDALSILDQAISMGDGKVDYDDVVSMLGLVTNENLFDIT 253 (541)
T ss_pred EEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf 75438999999999999998499987899999997459977889999999998359986699999996899989999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 76301363346788765430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM 320 (369)
Q Consensus 241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~ 320 (369)
+++.++|...++..+++++..|.|+..|+.+|+.++|+++++|..++..+.+.+++++...+..+++.++.+.|.++|+.
T Consensus 254 ~~i~~~d~~~~l~~~~~i~~~G~d~~~fl~dLi~~~R~lll~k~~~~~~~~l~~~~e~~~~l~~~a~~~~~~~l~~~~~~ 333 (541)
T PRK05563 254 DSIIEKDIEKSMEIIDDIVLSGKDIYNFIKDLITHFRNLLMVKVSSNPEEILDMSEENIELLKEQSKKIRIEEIMRCIRI 333 (541)
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99985899999999999998699999999999999999999760697376521799999999999970899999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 999999830278889999999999953304999899999765555
Q 537021.9.peg.4 321 ILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSPEEIARYIVEEK 365 (369)
Q Consensus 321 l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~~~s~~~~~~~~~~~~ 365 (369)
+.++..+++.+++|+++|||+++|||++...++.+.+.+++....
T Consensus 334 L~~~~~~lk~s~~pr~~lEm~likl~~~~~~~s~e~ll~ri~~LE 378 (541)
T PRK05563 334 LQEAEEQSKWSKQPRIYLELAIIKMCKIEYDTSKEVLLSRINKLE 378 (541)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 999999961489814999999999853466887789999998887
No 4
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=715.44 Aligned_cols=360 Identities=37% Similarity=0.631 Sum_probs=344.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
+|||++++++|++++..||+||||||+||+|+||||+||+||++|||..+....|+.+|||.|.+|+.|..|+|+||+|+
T Consensus 23 liGQ~~~~~~l~n~i~~~~~~~aylf~G~rG~GKTt~Ari~ak~lnc~~~~~~~~~~~~c~~c~~c~~i~~~~~~dv~Ei 102 (507)
T PRK06645 23 LQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEKCTNCISFNNHNHPDIIEI 102 (507)
T ss_pred HCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEE
T ss_conf 23939999999999973996634774587997889999999999679998888998888888767899865899985996
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4 81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF 160 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~ 160 (369)
||||++|||+||+++++++|+|..|+|||||||||||||.+|||||||||||||+||+|||+||+|+|+|+||+||||+|
T Consensus 103 Daas~~gv~~ir~l~~~~~~~p~~~~~kv~iidE~hmls~~a~nallktlEepp~~~~Fi~atte~~kip~ti~srcq~f 182 (507)
T PRK06645 103 DAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRY 182 (507)
T ss_pred ECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCHHHHHHCEEE
T ss_conf 37888888999999863551787674358995214224899999999974278644389997485364837888543278
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHH---HCCCCHHHHHHCCCCCCHHHHH
Q ss_conf 1024540013567876431013456256644565316764200110001110000---0012103220001356777778
Q 537021.9.peg.4 161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARC---NDKIVTSSVRLMLALADRNRIM 237 (369)
Q Consensus 161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~---~~~i~~e~v~~llg~~~~~~i~ 237 (369)
+|++++.++|..+|+.|+++|+++++++++.+||+.|+||||||+++|||+++++ ++.++.+.|+++||+.++..++
T Consensus 183 ~~~~i~~~~i~~~l~~i~~~E~~~~~~~al~~ia~~a~Gs~RDalslldqai~~~~~~~~~I~~~~V~~MLGl~Drs~li 262 (507)
T PRK06645 183 DLRRLSFEEIFKLLEYITKQENLKADIEALRIIAYKSEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDLSVII 262 (507)
T ss_pred EEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHH
T ss_conf 75459979999999999997687777899999998559986789999999999754898702699999983899856799
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 88876301363346788765430476213578777534899999974574122344998899999999862998999999
Q 537021.9.peg.4 238 DLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRF 317 (369)
Q Consensus 238 ~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~ 317 (369)
+|++.+++||..+++..++++++.|.||..++++|+..+|.+..++..++.. ..+++.+...+..+|+.++...|.++
T Consensus 263 dL~e~Il~Gd~~kaL~~l~~iy~~G~Dp~~iL~DLLeiih~i~~ik~l~~~~--~~l~ese~~ri~~is~ki~~~~L~lf 340 (507)
T PRK06645 263 EFVEYIIERETEKAINLINKLYGSSVNLEIFIESVSDFIAYLNKVKMLPNYS--LPIYESFNDRTKSILDKISLPHLSIL 340 (507)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 9999998299999999999999849999999999999999999997478754--56553079999999983899999999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 999999999830278889999999999953304999899999765
Q 537021.9.peg.4 318 WQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSPEEIARYIV 362 (369)
Q Consensus 318 lq~l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~~~s~~~~~~~~~ 362 (369)
||++.++..+++.++||++++||+++||+|....|++++......
T Consensus 341 WQillKg~eEL~~apnp~~alEM~LIRL~y~~~lP~~~d~~~n~~ 385 (507)
T PRK06645 341 WQIYNKGVQEIKISYNQLTETEMLVIKSIYSTSLPLLTDSDGNNQ 385 (507)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 999985799985289888889999999998477998444434443
No 5
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=705.03 Aligned_cols=359 Identities=32% Similarity=0.511 Sum_probs=341.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
||||+++++.|++++++||+||||||+||+|+||||+||+||++|||+++. ..+|||.|.+|+.+..|+|||++|+
T Consensus 18 vvGQe~vv~~L~nai~~~rl~HAyLFsGprG~GKTt~ArilAk~LnC~~~~----~~~PCg~C~sC~~i~~g~~~DviEi 93 (560)
T PRK06647 18 LEGQDFVVETLKHSIEKNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGP----TIMPCGECFSCKSIDNDSSLDVIEI 93 (560)
T ss_pred HCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC----CCCCCCCCHHHHHHHCCCCCCEEEE
T ss_conf 039499999999999749977436632899878999999999996599999----9888878878888745999875764
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4 81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF 160 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~ 160 (369)
||+|++|||+||+++++++++|.+|+||||||||||+||.+|||||||||||||++|+|||+||+|+||||||+||||+|
T Consensus 94 daasn~~VddIR~l~e~v~~~P~~~~yKV~IIDEahmLt~~A~NALLKtLEEPP~~~~FILaTte~~KI~~TI~SRCQ~f 173 (560)
T PRK06647 94 DGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHF 173 (560)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHCHHHHHHHHEEE
T ss_conf 36454888999999998632876687069996465655999999999986348875599997799476848999651041
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf 10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4 161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240 (369)
Q Consensus 161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll 240 (369)
+|++++.++|..+|++|+++|++++|++|+.+||+.|+||||||+++|||+++++++.++.+.|.+++|..+.+.+++++
T Consensus 174 ~Fk~i~~~~I~~~L~~I~~~E~i~~e~~AL~lIa~~a~Gs~RDalslldq~i~~~~~~i~~~~v~~~lG~~~~~~~~~l~ 253 (560)
T PRK06647 174 NFRLLSLEKIYEMLKKVCLEDDIKYEDEALKWIAYKSGGSVRDAYTLFDQIVSFSNSDITLEQIRSKMGLTSDEFLEKLS 253 (560)
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf 05559999999999999986798879999999999778958889999999996079977899999986898889999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 76301363346788765430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM 320 (369)
Q Consensus 241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~ 320 (369)
+++.++|...++..++++...|.|+.+|+.+++.+||+++++|.......... ...+.+.++++.++.+++.++|++
T Consensus 254 ~~i~~~d~~~~l~~~~~i~~~G~d~~~fl~~li~~~R~lll~k~~~~~~~~~~---~~~e~i~~~a~~~d~~~l~~~~~i 330 (560)
T PRK06647 254 SSILNKDLKELLCVLDAIFLSGVSVEQFLLDCIEFFRELLFLKLGIKNEMFIG---IKAESLPEKLLEFDLNQIERAISV 330 (560)
T ss_pred HHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCC---CCHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 99994699999999999998099999999999999999999761486243312---318899999974799999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 9999998302788899999999999533049998999997655554
Q 537021.9.peg.4 321 ILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSPEEIARYIVEEKK 366 (369)
Q Consensus 321 l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~~~s~~~~~~~~~~~~k 366 (369)
+.++..+|+.++||++.|||+++|||++....+++.+++++.+.++
T Consensus 331 l~~~~~dl~~s~~Pk~~lEm~llRml~l~~~~s~~~l~~~~~~~e~ 376 (560)
T PRK06647 331 LLETYRDLQFSVNPRYELEINFIKILRLKDYVPNHVLIKQIQDIED 376 (560)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 9989985786899308899999999846789981789999867877
No 6
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=704.44 Aligned_cols=347 Identities=35% Similarity=0.535 Sum_probs=336.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
||||+++++.|+|++.+||++|||||+||+|+||||+||+||++|||.++..+. +|||.|.+|+.|..|+|+||+|+
T Consensus 19 vVGQ~~vv~~L~nai~~~ri~HAyLF~GprGtGKTT~ArilAkaLnC~~~~~~~---~pCg~C~~C~~I~~g~~~DViEi 95 (462)
T PRK06305 19 ILGQDAVVTVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQ---EPCNQCAICKEISSGTSLDVIEI 95 (462)
T ss_pred HCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCCCCHHHHHHHCCCCCCEEEE
T ss_conf 049099999999999849976234303899859999999999996799998888---98876688899863899986864
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4 81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF 160 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~ 160 (369)
||+|++|||+||+++++++|+|.+|+|||||||||||||.+|||||||||||||+||+|||+||+|+|||+||+||||+|
T Consensus 96 DaAs~~gVddIRel~e~v~~~P~~~~yKVyIIDEvhmLs~~AfNALLKtLEEPP~~v~FILaTTe~~KIp~TIlSRCQrf 175 (462)
T PRK06305 96 DGASHRGIEDIRQINETVLFTPSKSQYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKM 175 (462)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHHCCCCCEEEEEEECCHHHCCHHHHHHHHEE
T ss_conf 35534466899999977100886775059998152117999999999986189877499998188142854787654023
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf 10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4 161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240 (369)
Q Consensus 161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll 240 (369)
+|++++.++|..+|.+|+++|++++|++++.+||+.|+||||||+++|||+++++++.|+.++|.+++|..+++.+++++
T Consensus 176 ~F~~i~~~~I~~~L~~I~~~E~i~~e~~AL~lIA~~a~GsmRDAlslLDQ~i~~~~~~it~~~V~~~lG~v~~~~l~~L~ 255 (462)
T PRK06305 176 HLKRIPEETIIDKLALIAQQDGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLSPDTVAKALGLLSQDSLYTLA 255 (462)
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf 32579999999999999998399859999999999858958789999999998479986899999986899889999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 76301363346788765430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM 320 (369)
Q Consensus 241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~ 320 (369)
+++..+|..+++..++++++.|.|+..|+++|+.+||++++.+. ...+..+++.++.+.|.++|++
T Consensus 256 ~ai~~~d~~~~l~~~~~i~~~G~d~~~~l~dL~~~~r~ll~~~~--------------~~~~~~~a~~~~~e~l~~~~~i 321 (462)
T PRK06305 256 EAITTQNYAQALGPVTDALNSGVAPAHFLHDLTLFFRSLLLKQE--------------NSTLSSFASKYSSEQLLEIIDF 321 (462)
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC--------------HHHHHHHHHHCCHHHHHHHHHH
T ss_conf 99983899999999999998499999999999999999998626--------------7999999874799999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 99999983027888999999999995330499989999976555
Q 537021.9.peg.4 321 ILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSPEEIARYIVEE 364 (369)
Q Consensus 321 l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~~~s~~~~~~~~~~~ 364 (369)
+.+++.+++.+++|++++||+++||+++...|+++++++.+.+.
T Consensus 322 l~~~~~~l~~a~~~r~~lEm~llrl~~~~~~~~~~~lv~~~~~~ 365 (462)
T PRK06305 322 LGESAKHLQLTIFEKTFLETVIIHLIRIYQRPTLSQLVSQIKQP 365 (462)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
T ss_conf 99999995259974799999999999827799989999874275
No 7
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=701.33 Aligned_cols=358 Identities=33% Similarity=0.554 Sum_probs=335.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
||||+++++.|+|++.+||+||||||+||+|+|||++||+||++|||+++.. .+|||.|++|+.|..|+|||++|+
T Consensus 18 vvGQ~~v~~~L~nai~~~ri~HAyLF~GprGtGKts~Ari~AkaLnC~~~~~----~~pC~~C~~C~~i~~g~~~DviEi 93 (563)
T PRK06674 18 VVGQEHVTKTLQNALLQEKVSHAYLFSGPRGTGKTSIAKVFAKAVNCEHAPV----AEPCNECPSCLGITNGSISDVLEI 93 (563)
T ss_pred HCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHHCCCCCCEEEE
T ss_conf 2480999999999998499650343128998689999999999857999999----887766878999855899877985
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4 81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF 160 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~ 160 (369)
|++|++|||+||++.++++|+|++|+||||||||||+||.+|||||||||||||++|+|||+||+|++|||||+||||+|
T Consensus 94 Daasn~gVd~IR~i~~~v~~~P~~~~yKV~IIDeah~Lt~~A~NALLKtLEEPP~~viFILaTtep~ki~~TI~SRCQrf 173 (563)
T PRK06674 94 DAASNNGVDEIRDIRDKVKFAPSAVEYKVYIIDEVHMLSIGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRF 173 (563)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCHHHHHHHEEE
T ss_conf 25555787999999998264886787379998545637999999999986388756499996599475847887331031
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf 10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4 161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240 (369)
Q Consensus 161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll 240 (369)
+|++++.++|..+|++|+++||+++|++++.+||+.|+||||||+|+|||++++++++++.++|..++|..+.+.+++++
T Consensus 174 ~F~ri~~~~i~~rL~~I~~~E~i~~~~~aL~~Ia~~a~GsmRDAlsiLdQ~~s~~~~~i~~~~v~~~lG~~~~~~~~~l~ 253 (563)
T PRK06674 174 DFRRISVNDIVERLSTVVTNEGTQVEDEALQIIARAADGGMRDALSLLDQAISFSDERVTTEDVLAVTGAVSQQYLGNLV 253 (563)
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf 27889999999999999998499987889999999769978899999999997159976899999986899889999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 76301363346788765430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM 320 (369)
Q Consensus 241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~ 320 (369)
+++.++|...++..+++++..|.|+.+|+.+|+.++|+++++|..++........ ...+.+..+++.++.+.|+++++.
T Consensus 254 ~~i~~~d~~~~l~~~~~~~~~G~d~~~~~~dl~~~~r~~l~~k~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~i~~ 332 (563)
T PRK06674 254 ECIRENDVSRALRIIDEMMGQGKDPVRLMEDFIYYYRDMLLYQTAPQLEHMLERV-MVDEQFRMLSEEMPPEVIYEIIHT 332 (563)
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9998489999999999999879999999999999999988742379567654311-154999999852899999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC-----HHHHHHHHHH
Q ss_conf 999999830278889999999999953304999-----8999997655
Q 537021.9.peg.4 321 ILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPS-----PEEIARYIVE 363 (369)
Q Consensus 321 l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~~~s-----~~~~~~~~~~ 363 (369)
+.++..+++.+.+|++.+||+++|||+....++ .+.+.+++..
T Consensus 333 l~~~~~~~r~s~~~~~~lE~~~vkl~~~~~~~~~~~~~~~~l~~~i~~ 380 (563)
T PRK06674 333 LSKSQQEMKWTNHPRIFLEVVMVQLCQQFMMQANGADRLQAIMNRMQQ 380 (563)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 999999961478821889999999953035887775106789999999
No 8
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=0 Score=698.43 Aligned_cols=347 Identities=36% Similarity=0.549 Sum_probs=333.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf 9284899999999998287670620107879888899999999961468777-886658789997799997798778222
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHI-DVPTVEFEGFGEHCQAIIRGNHVDVVE 79 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~-~~~~~~~c~~c~~c~~i~~~~~~d~~e 79 (369)
||||+++++.|+|++..||++|||||+|++|+||||+||+|||+|||.+... .+++.+|||+|.+|+.|..|+|+||+|
T Consensus 18 ~vGQ~~v~~~l~na~~~~r~~haylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~C~~i~~g~~~d~~E 97 (721)
T PRK12323 18 LVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRACTEIDAGRFVDYIE 97 (721)
T ss_pred HCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEE
T ss_conf 32859999999999971997544750279988898999999999768998667898788787765468775689876477
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf 45332233455566555445654204652377511566480016789999972122111466506754330356754333
Q 537021.9.peg.4 80 LDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQR 159 (369)
Q Consensus 80 ~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~ 159 (369)
||+|||+|||+||+|++++.|+|..|+||||||||+||||+.|||||||||||||+||+|||+||+|+||+.||+||||+
T Consensus 98 iDaas~~~v~~~r~l~~~~~y~P~~~~~KvyiiDevhmls~~afnalLKtlEePP~hv~FilaTT~~~Kip~TilSRc~~ 177 (721)
T PRK12323 98 MDAASNRGVDEMAQLLDQAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQ 177 (721)
T ss_pred EECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCHHHHHHHHH
T ss_conf 43676788899999998545588766446999854000589999999984017975538999438634485889877654
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHH
Q ss_conf 21024540013567876431013456256644565316764200110001110000001210322000135677777888
Q 537021.9.peg.4 160 FDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDL 239 (369)
Q Consensus 160 ~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~L 239 (369)
|+|++++.++|..+|.+|+.+|++.+|++++.+||+.++|||||||++|||+++|++++++.+.|..+||..+++.+++|
T Consensus 178 f~~~~~~~~~i~~~l~~i~~~E~i~~~~~al~~ia~~a~Gs~RDalslldQaia~~~g~~~~~~v~~mlg~~d~~~~~~l 257 (721)
T PRK12323 178 FNLKQMPPGHIVSHLDAILGQEGIGHEGNALRLLAQAAHGSMRDALSLTDQAIAYSAGNVSEEAVRGMLGAIDQRYLVRL 257 (721)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHH
T ss_conf 23478999999999999999839977999999999975896476888999999865896269999998688877899999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 87630136334678876543047621357877753489999997457412234499889999999986299899999999
Q 537021.9.peg.4 240 FGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQ 319 (369)
Q Consensus 240 l~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq 319 (369)
++++.++|...++..++++...|.|+..+|.+|+..+|++.+.+..+.... ....+...+..+++.++.++++.+||
T Consensus 258 l~al~~~d~~~~~~~~~~~~~~~~d~~~~l~~l~~~lh~ia~~q~~p~~~~---~~~~~~~~~~~la~~~~~e~~Ql~yq 334 (721)
T PRK12323 258 LDALAAEDGAAVLAIADEMADRSLSFAGALQDLASLLSKVALAQRVPAAVQ---DDWPEADDIRRLAGVFDAQAVQLFYQ 334 (721)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 999995589999999999998688999999999999999999985620013---55500899999996299999999999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 9999999830278889999999999953304
Q 537021.9.peg.4 320 MILKGISEIEGFSRPMEAVEMVLIRLAHAVQ 350 (369)
Q Consensus 320 ~l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~ 350 (369)
+.+.++++|...++++..|||+||||..+..
T Consensus 335 i~l~gr~dl~~ap~~~~g~eM~lLRmlaf~p 365 (721)
T PRK12323 335 VANLGRSELALAPDEYAGFTMTLLRMLAFNP 365 (721)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
T ss_conf 9983176651198802509999999985698
No 9
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=690.16 Aligned_cols=360 Identities=32% Similarity=0.512 Sum_probs=340.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCC--CCCCC
Q ss_conf 9284899999999998287670620107879888899999999961468777886658789997799997798--77822
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGN--HVDVV 78 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~--~~d~~ 78 (369)
||||+++++.|+|++.+||++|||||+||+|+||||+||+||++|||++.. +.+|||+|.+|+.|..|+ |+||+
T Consensus 17 viGQe~v~~~L~~Ai~~gri~HAYLFsGprG~GKTt~ARilAkaLNC~~~~----~~~PCg~C~sC~~i~~g~~~~~Dvi 92 (775)
T PRK07764 17 VVGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCAQGP----TSTPCGVCDSCVALAPGGPGSLDVV 92 (775)
T ss_pred HCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC----CCCCCCCCHHHHHHHCCCCCCCCEE
T ss_conf 228599999999999819976337623788878889999999996689999----9898888763788863898888668
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 24533223345556655544565420465237751156648001678999997212211146650675433035675433
Q 537021.9.peg.4 79 ELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQ 158 (369)
Q Consensus 79 e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq 158 (369)
|||++||++||+||+|++++.|+|++|+||||||||+||||.++||||||||||||+||+|||+||+|+||++||+||||
T Consensus 93 EiDAAS~~gVddiReL~e~~~y~P~~~ryKVyIIDEaHmls~~afNALLKtLEEPP~hvvFIlaTTep~kip~TI~SRcq 172 (775)
T PRK07764 93 EIDAASHGGVDDARELRERAFFAPAQSRYRIFIIDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVIGTIRSRTH 172 (775)
T ss_pred EECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHCHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCHHHHHHCC
T ss_conf 73156556889999999854768767863599985354407999999988622786462799954873547167764102
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHH-CCCCHHHHHHCCCCCCHHHHH
Q ss_conf 3210245400135678764310134562566445653167642001100011100000-012103220001356777778
Q 537021.9.peg.4 159 RFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCN-DKIVTSSVRLMLALADRNRIM 237 (369)
Q Consensus 159 ~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~-~~i~~e~v~~llg~~~~~~i~ 237 (369)
+|+|++++.++|..+|.+|+.+||+++|++++.+|++.++||||||||+|||++++.+ +.++++.+..+||..+...+.
T Consensus 173 ~f~Fr~i~~~~~~~~l~~i~~~E~i~~~~~al~li~r~~~Gs~RDalS~ldQl~a~~~~~~v~~~~a~~llG~~~~~~l~ 252 (775)
T PRK07764 173 HYPFRLVPPGTMRPYLERICAQEGVVVDDAVLPLVIRAGGGSPRDTLSVLDQLLAGAGDDGVTYERAVALLGVTDVALID 252 (775)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHHCCCCHHHHH
T ss_conf 34526699999999999999983998798999999998289667689999999840488841099999985888589999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCHHHHHHHHHHHHHCCHHHHH
Q ss_conf 88876301363346788765430476213578777534899999974574122--3449988999999998629989999
Q 537021.9.peg.4 238 DLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMAD--TLLYSEAENARALQYSKEVSITFLS 315 (369)
Q Consensus 238 ~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~--~~~~~~~e~~~i~~~a~~i~~~~L~ 315 (369)
++++++..+|...++..++++++.|.|+.+|..+|+.++|||++++..++... +.....++.+.+..++..++...|.
T Consensus 253 ~~~~al~~~d~~~~~~~v~~~~~~G~d~~rf~~dLl~~~Rdl~~~~~~~~~~~~~l~~~~~~~~~~~~~qa~~~~~~~l~ 332 (775)
T PRK07764 253 DAVDALAAGDGAALFGVVDRVIEAGHDPRRFAEDLLERFRDLIVLQAVPDAAERGLVDAPEDVLDRMREQAARLGAAELT 332 (775)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHH
T ss_conf 99999983789999999999998287889999999999999999986106665125568888999999999860999999
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 9999999999983027888999999999995330499989999976555
Q 537021.9.peg.4 316 RFWQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSPEEIARYIVEE 364 (369)
Q Consensus 316 ~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~~~s~~~~~~~~~~~ 364 (369)
++.+++..+..+|+...+|||.||+++.||.......+...+..++...
T Consensus 333 r~a~~~~~~l~~m~ga~~prl~le~~~ar~l~p~~~~~~~~~~~r~~~~ 381 (775)
T PRK07764 333 RYAEVVNAGLGEMRGATSPRLLLELLCARLLLPSASDTERALLARVERL 381 (775)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 9999999999874278975689999999870777674357899889987
No 10
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed
Probab=100.00 E-value=0 Score=690.81 Aligned_cols=343 Identities=38% Similarity=0.638 Sum_probs=330.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
||||+++++.|.|++..||++|||||+|++|+||||+||+|||+|||+.+. +.+|||+|.+|+.|..|+|+|++||
T Consensus 18 ~~gq~~~~~~l~~~~~~~~~~~a~l~~g~rg~gkt~~ar~~ak~lnc~~~~----~~~pc~~c~~c~~i~~~~~~d~~e~ 93 (705)
T PRK05648 18 MVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNCETGV----SSTPCGECSVCREIDEGRFVDLIEV 93 (705)
T ss_pred HCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC----CCCCCCCCHHHHHHHCCCCCCEEEE
T ss_conf 328199999999999709863046500789888989999999986778999----8897877600466624897763445
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4 81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF 160 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~ 160 (369)
|+|||+|||++|+|++++.|+|..|+||||||||+|||+..+||||||||||||+||+|||+||+|+||+.||+||||+|
T Consensus 94 d~as~~~v~~~r~~~~~~~~~p~~~~~kv~~idevhmls~~~fnallktleepp~~v~f~~att~~~k~p~t~~src~~~ 173 (705)
T PRK05648 94 DAASRTKVEDTRELLDNVQYAPTRGRYKVYLIDEVHMLSSHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQF 173 (705)
T ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCHHHHHHHHHC
T ss_conf 15544788999999985551776774579998426541799999998740479754599984287353758999766430
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf 10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4 161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240 (369)
Q Consensus 161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll 240 (369)
+|++++.++|..+|..|+.+|++.++++++.+|++.++||||||||+|||+++|+++.++.++|..+||..++..+++++
T Consensus 174 ~~~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~~~~~~~g~~rd~ls~~dq~~~~~~~~~~~~~v~~mlg~~~~~~~~~l~ 253 (705)
T PRK05648 174 SLKNMSPERVVEHLSHVLGAENVPFEEDALWLLGRAADGSMRDAMSLTDQAIAFGEGKVLAADVRAMLGTLDHGQVYGVL 253 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf 23689999999999999997599778999999999748967779999999986068840799999985888778999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 76301363346788765430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM 320 (369)
Q Consensus 241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~ 320 (369)
+++.++|...++..++++...|.|+..+|..|+..+|.+.+.+..++..+ ....+...+..+++.++.++++.+||+
T Consensus 254 ~a~~~~d~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~q~~p~~~~---~~~~~~~~~~~lA~~~s~E~vQL~YQi 330 (705)
T PRK05648 254 QALLEGDARALLEAVRHLAEQGPDWNGVLAEMLNVLHRVAIAQALPEAVD---NGQGDRERVLALAQALPAEDVQFYYQM 330 (705)
T ss_pred HHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHC---CCCCHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 99995689999999999998588999999999999999999984502102---453049999999985799999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 999999830278889999999999953304
Q 537021.9.peg.4 321 ILKGISEIEGFSRPMEAVEMVLIRLAHAVQ 350 (369)
Q Consensus 321 l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~ 350 (369)
++.++++|..++++|+.|||+||||.-+..
T Consensus 331 ~l~gr~dL~lAPd~r~g~EM~LLRmLAFrP 360 (705)
T PRK05648 331 GLIGRRDLPLAPDPRGGFEMVLLRMLAFRP 360 (705)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 984020046699703649999999986587
No 11
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=688.93 Aligned_cols=344 Identities=36% Similarity=0.606 Sum_probs=329.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
||||+++++.|+|++..||++|||||+||+|+||||+||+|||+|||+.+.. .+|||+|.+|+.|..|+|+||+||
T Consensus 18 ~vGQ~~v~~~l~na~~~~r~~haylf~G~rG~GKtt~ari~ak~lnc~~~~~----~~pcg~c~~c~~i~~g~~~d~~ei 93 (643)
T PRK07994 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT----ATPCGVCDNCREIEQGRFVDLIEI 93 (643)
T ss_pred HCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHHCCCCCCEEEE
T ss_conf 5387999999999998298663487458998888899999999967999999----997876776898865898875886
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4 81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF 160 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~ 160 (369)
|+|||+|||+||++++++.|+|..|+||||||||+||||++|||||||||||||+||+|||+||+|+||++||+||||+|
T Consensus 94 daas~~~vd~~rel~~~~~y~p~~~r~kvyiidEvhmls~~afnalLKtlEePp~hv~filaTT~~~k~p~TilSRC~~f 173 (643)
T PRK07994 94 DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQF 173 (643)
T ss_pred ECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCCCHHCEEEEECCCHHHCCHHHHHHHHHE
T ss_conf 36777888999999984466887785369997221015899999999862378610089986077454847899777650
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf 10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4 161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240 (369)
Q Consensus 161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll 240 (369)
+|++++.++|..+|.+|+.+|++.+|++++.+||+.++||||||+|+|||+++|++++++.+.|..+||..+++.+++++
T Consensus 174 ~~~~~~~~~i~~~l~~i~~~e~i~~~~~al~~ia~~a~gs~rdalsl~dq~i~~~~~~~~~~~v~~mlg~~d~~~~~~ll 253 (643)
T PRK07994 174 HLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAADGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLV 253 (643)
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf 01669999999999999997599878899999999747865668889999998658974799999985899878999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 76301363346788765430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM 320 (369)
Q Consensus 241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~ 320 (369)
+++..+|...++..++++...|.|+..+|+.|+..+|.+.+.+..++..+.. ..+....+..+++.++.++++.+||+
T Consensus 254 ~al~~~d~~~~~~~~~~~~~~~~~~~~~l~~l~~~lh~ia~~Q~~p~~~~~~--~~~~~~~~~~La~~~~~e~vQL~YQI 331 (643)
T PRK07994 254 EALVEANGERVMALINEAAARGIEWEALLVEMLSLLHRIAMVQLSPAALGND--MAAIELRMRELARTIPPTDIQLYYQT 331 (643)
T ss_pred HHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCC--CHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 9999569999999999999868899999999999999999998471210254--30167999999984799999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 999999830278889999999999953304
Q 537021.9.peg.4 321 ILKGISEIEGFSRPMEAVEMVLIRLAHAVQ 350 (369)
Q Consensus 321 l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~ 350 (369)
++.++++|..+++++..|||+||||.-+..
T Consensus 332 al~GrkdL~lAPd~r~gfEMtLLRmLAF~P 361 (643)
T PRK07994 332 LLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 (643)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 983020046698714539999999983688
No 12
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=689.57 Aligned_cols=343 Identities=36% Similarity=0.604 Sum_probs=329.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
||||+++++.|+|++..||++|||||+||+|+||||+||+|||+|||+++... +|||.|.+|+.|..|+|+|++||
T Consensus 18 ~vGQ~~v~~~L~nal~~~rl~haylf~G~rGvGKTt~Ari~Ak~lNC~~~~~~----~pCg~C~~C~~i~~g~~~D~~Ei 93 (704)
T PRK08691 18 LVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHG----EPCGVCQSCTQIDAGRYVDLLEI 93 (704)
T ss_pred HCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHCCCCCCEEEE
T ss_conf 41869999999999981997523750278987888999999999679999999----97877776787855899874774
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4 81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF 160 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~ 160 (369)
|++||+|||+||+|++++.|+|..|+||||||||+||||.+|||||||||||||+||+|||+||+|+||+.||+||||+|
T Consensus 94 DaAs~~~vdd~R~l~~~~~y~P~~~~yKVyiiDEvhmLs~~afNAlLKtLEEPP~~v~FilaTTdp~Klp~TIlSRC~~f 173 (704)
T PRK08691 94 DAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQF 173 (704)
T ss_pred ECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCHHHHHHHHHH
T ss_conf 24544588999999985346886785359998315443899999999861479756089985488464758999888771
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf 10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4 161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240 (369)
Q Consensus 161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll 240 (369)
+|++++.++|..+|.+|+.+|++++|++++.+||+.++||||||+|+|||+++|++++++.+.|..|||..+++.+++|+
T Consensus 174 ~l~~~~~~~i~~~L~~i~~~E~i~~e~~al~~ia~~a~Gs~RDalslldQaia~~~g~~~~~~v~~mLG~~d~~~~~~ll 253 (704)
T PRK08691 174 VLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELL 253 (704)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf 02689999999999999998398568999999999757857779889999999648962699999985888778999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 76301363346788765430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM 320 (369)
Q Consensus 241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~ 320 (369)
+++.++|...++..++++...|.|+..+|.+|+..+|.+.+++..+..... ...+...+..+++.++.++++.+||+
T Consensus 254 ~al~~~d~~~~~~~~~~~~~~~~~~~~~l~~l~~~lh~ia~~q~~p~~~~~---~~~~~~~~~~la~~~~~e~~Ql~Yqi 330 (704)
T PRK08691 254 TGIINQDGAALTAKAQEMAACAVGFDNALGELAILLQQLALIQAVPNALAH---DDPDSDILHRLAQTISGEQIQLYYQI 330 (704)
T ss_pred HHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHCCC---CCCCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999955899999999999986899999999999999999999858131045---67108999999970899999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 999999830278889999999999953304
Q 537021.9.peg.4 321 ILKGISEIEGFSRPMEAVEMVLIRLAHAVQ 350 (369)
Q Consensus 321 l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~ 350 (369)
.+.++++|...++++..|||+||||.-+..
T Consensus 331 ~l~gr~dl~~ap~~~~g~eM~lLRmlaF~P 360 (704)
T PRK08691 331 AVHGKRDLSLAPDEYAGFMMTLLRMLAFAP 360 (704)
T ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 982202255699702539999999984588
No 13
>PRK08770 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=684.46 Aligned_cols=341 Identities=40% Similarity=0.631 Sum_probs=327.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
||||+++++.|.|++..||++|||||+|++|+||||+||+|||+|||+.+.. .+|||+|.+|+.|..|+|+|++||
T Consensus 18 ~~gq~~~~~~l~~~~~~~~~~~a~lf~g~rg~gkt~~ar~~a~~lnc~~~~~----~~pc~~c~~c~~i~~~~~~d~~e~ 93 (663)
T PRK08770 18 LVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNCETGTS----ADPCGQCPACLDIDAGRYIDLLEI 93 (663)
T ss_pred HCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHHCCCCCCEEEE
T ss_conf 2285999999999997099740476227998888899999999867899999----997877877898854898865886
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4 81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF 160 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~ 160 (369)
|+|||+|||++|+|++++.|.|..|+||||||||+||||..+||||||||||||+||+|||+||+|+||+.||+||||+|
T Consensus 94 daas~~~v~~~r~~~~~~~~~p~~~~~kvy~idevhmls~~~fna~lktleepp~~v~f~~att~~~k~p~t~~src~~f 173 (663)
T PRK08770 94 DAASNTGVDDVREVIENAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQF 173 (663)
T ss_pred ECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCHHHHHHHHHC
T ss_conf 46765888999999984435887774369997004332899999998740278644289985487333748999888763
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf 10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4 161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240 (369)
Q Consensus 161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll 240 (369)
+|++++.++|..+|.+|+.+|++.+|++++.+|++.++||||||||+|||+++|+++.++.+.|..+||..+++.+++|+
T Consensus 174 ~~~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~~~~~~~gs~rd~lsl~~q~~~~~~~~~~~~~v~~mlg~~~~~~~~~l~ 253 (663)
T PRK08770 174 NLKRLDEDQIQGQMTRILAAEQIESDPSAIVQLSKAADGSLRDGLSLLDQAIAYAGGALREDVVRTMLGTVDRTQVGAML 253 (663)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf 43779999999999999998399769999999999747856778889999998668976899999984888878999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 76301363346788765430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM 320 (369)
Q Consensus 241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~ 320 (369)
+++.++|...++..++++...|.|+..+|..|+..+|.+.+.+..++... ..+...+..++++++.++++.+||+
T Consensus 254 ~al~~~d~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~a~~q~~~~~~~-----~~~~~~~~~lA~~~~~e~vQL~YQI 328 (663)
T PRK08770 254 QALADGDGARLLQVVAALAEFSPDWSGVLEALAEALHRIQVQQLVPSVAF-----VGDGIDPTPFAAQLRPEVVQLWYQM 328 (663)
T ss_pred HHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC-----CCCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99996689999999999998688999999999999999999984630124-----5435679999972899999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 999999830278889999999999953304
Q 537021.9.peg.4 321 ILKGISEIEGFSRPMEAVEMVLIRLAHAVQ 350 (369)
Q Consensus 321 l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~ 350 (369)
.+.++++|..+++++..|||+||||.-+-.
T Consensus 329 aL~Gr~dL~~APd~~~gfeM~LLRmlafRP 358 (663)
T PRK08770 329 ALNGRRDLYLAPSPRAGFEMAVLRMLAFRP 358 (663)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 983043255698667869999999842797
No 14
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=685.35 Aligned_cols=343 Identities=36% Similarity=0.578 Sum_probs=329.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
||||+++++.|+|++..||++|||||+||+|+||||+||+|||+|||+.+.. .+|||+|.+|+.|..|+|+|++||
T Consensus 18 ~vGQ~~v~~~L~nal~~~rl~haylf~G~rGvGKTt~ARi~Ak~lNC~~~~~----~~pcg~C~~C~~i~~g~~~d~~Ei 93 (717)
T PRK08853 18 VVGQSHVLTALENALAHNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETGIT----STPCGQCATCKEIDEGRFVDLLEI 93 (717)
T ss_pred HCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC----CCCCCCCCCHHHHHCCCCCCEEEE
T ss_conf 1385999999999997099740576108898889899999999867899999----997888702676744787752454
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4 81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF 160 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~ 160 (369)
|+|||+|||+||+|++++.|+|..|+||||||||+||||..|||||||||||||+||+|||+||+|+||+.||+||||+|
T Consensus 94 DaAs~~~vdd~rel~~~~~y~p~~~~yKvyiiDEvHmls~~afnAlLKtlEEPP~hv~FilaTT~~~kip~TilSRc~~f 173 (717)
T PRK08853 94 DAASRTKVEDTRELLDNVQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQF 173 (717)
T ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCHHHHHHHHHC
T ss_conf 05656788999999985554887785479998305443899999998760378756489984387343738898765442
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf 10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4 161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240 (369)
Q Consensus 161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll 240 (369)
+|++++.++|..+|.+|+.+|+++++++++.+||+.++||||||+|+|||++++++++++.+.|..+||..++..+++|+
T Consensus 174 ~l~~~~~~~i~~~l~~i~~~E~i~~~~~al~~ia~~a~Gs~Rdalsl~dqaia~~~g~~~~~~v~~mlg~~d~~~~~~ll 253 (717)
T PRK08853 174 HLKPISVDQIHQQLDFVLDKEQVSAEARALGLIAHAADGSMRDALSLTDQAIALGNGQVTTDIVSHMLGTLDTDQAIHLL 253 (717)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf 32689999999999999997598769999999999768837788889999999658971699999985888778999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 76301363346788765430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM 320 (369)
Q Consensus 241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~ 320 (369)
+++.++|...++..++++...|.|+..+|++|+..+|.+.+.+..+...+. ...+...+..++++++.++++.+||+
T Consensus 254 ~al~~~d~~~~~~~~~~~~~~~~~~~~~l~~l~~~lh~ia~~q~~p~~~~~---~~~~~~~i~~la~~~~~e~~Ql~YQi 330 (717)
T PRK08853 254 EAISSKQPQTAMDCIQQLADNGVEWDGLLQQLATQLHRIAMYQALPATLDK---AQPDAERIELLSKALSPQDVQLYYQI 330 (717)
T ss_pred HHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHCC---CCCCHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 999955899999999999986889999999999999999999848142124---46418999999983899999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 999999830278889999999999953304
Q 537021.9.peg.4 321 ILKGISEIEGFSRPMEAVEMVLIRLAHAVQ 350 (369)
Q Consensus 321 l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~ 350 (369)
.+.++++|...++++..|||+||||.-+..
T Consensus 331 ~l~gr~dl~~apd~~~g~eM~lLRmlaF~P 360 (717)
T PRK08853 331 ALKGRQDLPLAPNGRIGMEMIVLRMMAFRP 360 (717)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 970301156699636769999999972587
No 15
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=684.37 Aligned_cols=343 Identities=37% Similarity=0.615 Sum_probs=329.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
||||+++++.|+|++..||++|||||+|++|+||||+||+|||+|||+.+. +.+|||+|.+|+.|..|+|+||+||
T Consensus 18 ~vGQ~~v~~~l~nal~~~rl~haylf~G~rGvGKTt~aRi~Ak~lnC~~~~----~~~pcg~C~~C~~i~~g~~~d~iEi 93 (816)
T PRK07003 18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGV----TSQPCGVCRACREIDEGRFVDYVEM 93 (816)
T ss_pred HCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC----CCCCCCCCHHHHHHHCCCCCCEEEE
T ss_conf 238499999999999709863147511789888889999999986789999----9897877555787755887754786
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4 81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF 160 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~ 160 (369)
|++||+|||+||+|++++.|+|..|+||||||||+||||+.+||||||||||||+||+|||+||+|+||+.||+||||+|
T Consensus 94 DaAS~~~vd~~r~l~~~~~y~p~~~r~KvyiiDEvHmls~~afnalLKtlEepP~hv~FilaTTd~~k~p~tilSRc~~f 173 (816)
T PRK07003 94 DAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQF 173 (816)
T ss_pred ECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCHHHHHHHHHC
T ss_conf 35543576899999986224786674479998415433999999999840379866489995588011528898777652
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf 10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4 161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240 (369)
Q Consensus 161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll 240 (369)
+|++++.++|..+|.+|+.+|++.+|++++.+|++.++||||||||+|||+|+|++++++.+.|..|||..++..++.|+
T Consensus 174 ~l~~~~~~~i~~~l~~i~~~E~i~~e~~al~lia~~a~GsmRDalsl~dQaia~~~g~~~~~~v~~mLG~~d~~~~~~ll 253 (816)
T PRK07003 174 NLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLL 253 (816)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf 23679999999999999998299779999999999767737888859999998469973799999985888778999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 76301363346788765430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM 320 (369)
Q Consensus 241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~ 320 (369)
+++.++|...++..++++...|.++..+|++|+..+|.+.+.++.+..... ...+...+..+++.++.++++.+||+
T Consensus 254 ~al~~~d~~~~~~~~~~~~~~~~~~~~~l~~l~~~lh~ia~~q~~p~~~~~---~~~~~~~~~~la~~~~~e~~Ql~Yqi 330 (816)
T PRK07003 254 DALAAADGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPGSVLD---EWPEAADLRRFAELLSPEQVQLFYQI 330 (816)
T ss_pred HHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHCCC---CCCCHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 999955899999999999986889999999999999999999846100023---46218999999972899999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 999999830278889999999999953304
Q 537021.9.peg.4 321 ILKGISEIEGFSRPMEAVEMVLIRLAHAVQ 350 (369)
Q Consensus 321 l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~ 350 (369)
.+.++++|...++++..|||+||||.-+..
T Consensus 331 ~l~gr~dl~~ap~~~~g~em~llRmlaf~p 360 (816)
T PRK07003 331 ATVGRAELGLAPDEYAGFTMTLLRMLAFEP 360 (816)
T ss_pred HHHCHHHCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 970344313498811309999999983788
No 16
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=0 Score=680.21 Aligned_cols=339 Identities=38% Similarity=0.606 Sum_probs=326.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
||||+++++.|+|++.+||++|||||+|++|+||||+||+|||+|||+.+. +.+|||+|.+|+.|..|+|+|++||
T Consensus 18 ~vgq~~v~~~l~~a~~~~r~~haylf~g~rg~gktt~ari~ak~lnc~~~~----~~~pcg~c~~c~~i~~g~~~d~~ei 93 (696)
T PRK06872 18 VVGQEHILTALSNGLKENRLHHAYLFSGTRGVGKTSIARLFAKGLNCVHGV----TATPCGECENCKAIEEGNFIDLIEI 93 (696)
T ss_pred HCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC----CCCCCCCCHHHHHHHCCCCCCEEEE
T ss_conf 238599999999999719863047511789888889999999986789999----9997888622576744787754675
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4 81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF 160 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~ 160 (369)
|+||++|||++|+|++++.|+|..|+||||||||+|||++.+||||||||||||+||+|||+||+|+||+.||+||||+|
T Consensus 94 daas~~~v~~~r~l~~~~~~~p~~~~~kvy~idevhmls~~~fnallktleepp~~v~f~latt~~~k~p~tilsrc~~f 173 (696)
T PRK06872 94 DAASRTKVEDTRELLDNVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSRCMQF 173 (696)
T ss_pred ECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCHHHHHHHHHE
T ss_conf 05655788999999984545776775479997005443899999998750279754489984386322748898766530
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf 10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4 161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240 (369)
Q Consensus 161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll 240 (369)
+|++++.++|..+|.+|+.+|++.+|++++.+||+.++|||||||+++||+++++++.++.+.|..|||..++..++.|+
T Consensus 174 ~~~~~~~~~i~~~l~~i~~~e~~~~~~~al~~~a~~a~gs~rdalsl~dqai~~~~g~~~~~~v~~mlg~~~~~~~~~l~ 253 (696)
T PRK06872 174 HLKALDQTQIAQHLEFILTQENIPFESPALEKLAKAAQGSIRDSLSLTDQAIAMSNANITLDVVSNMLGLLDDNQPIDIL 253 (696)
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf 02689999999999999998499779999999999758956778889999999758961699999985888777999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 76301363346788765430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM 320 (369)
Q Consensus 241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~ 320 (369)
+++.++|...++..++++...|.|+..+|.+|+..+|.+.+.+..++... +...+..++++++.++++.+||+
T Consensus 254 ~a~~~~d~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~q~~~~~~~-------~~~~~~~la~~~~~e~~ql~Yqi 326 (696)
T PRK06872 254 YALQQGNGEKLMKVIQAVAEKGGDWDKLLGEIAEKLHQIAMLQLLPQKSS-------EETQLGFLAKHISPEDVQFFYQV 326 (696)
T ss_pred HHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC-------CHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 99995589999999999998688999999999999999999985864578-------54799999985799999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 999999830278889999999999953304
Q 537021.9.peg.4 321 ILKGISEIEGFSRPMEAVEMVLIRLAHAVQ 350 (369)
Q Consensus 321 l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~ 350 (369)
.+.++++|...+++|..|||+||||.-+..
T Consensus 327 ~l~g~~dl~~apd~~~g~eM~lLRmlAFrP 356 (696)
T PRK06872 327 MVSGRKELAFAPNRRIGVEMTLLRALAFHP 356 (696)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 984120045699646749999999983588
No 17
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=676.00 Aligned_cols=339 Identities=36% Similarity=0.535 Sum_probs=320.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
||||+++++.|++++.+||+||||||+||+|+|||++|++||++|||.+.... +|||.|.+|+.+..|+|||++|+
T Consensus 17 vvGQe~i~~~L~nal~~~ri~HAyLF~GP~GtGKts~ArifAkaLnC~~~~~~----~pC~~C~~C~~i~~g~~~DviEi 92 (557)
T PRK07270 17 MVGQEVVATTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDG----EPCNNCDICRDITNGSLEDVIEI 92 (557)
T ss_pred HCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHCCCCCCEEEE
T ss_conf 14819999999999985995404421089986899999999999579998999----98887779999875899974873
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4 81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF 160 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~ 160 (369)
|++|++|||+||++.++++|+|++|+||||||||||+||.+|||||||||||||++|+|||+|++|++|||||+||||+|
T Consensus 93 daas~~gVd~IRei~~~~~~~P~~~~yKV~IIDEah~Ls~~A~NALLKtLEEPP~~~vFIL~Ttep~kIl~TI~SRCQrf 172 (557)
T PRK07270 93 DAASNNGVDEIRDIRDKSTYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRF 172 (557)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHCCCCCEEEEEEECCHHHCCHHHHHHHHHC
T ss_conf 47776788999999998423877788389997144534999999899985289987699998499475928887430001
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHH-CCCCHHHHHHCCCCCCHHHHHHH
Q ss_conf 10245400135678764310134562566445653167642001100011100000-01210322000135677777888
Q 537021.9.peg.4 161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCN-DKIVTSSVRLMLALADRNRIMDL 239 (369)
Q Consensus 161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~-~~i~~e~v~~llg~~~~~~i~~L 239 (369)
+|++++.++|..+|++|+++||+++|++++.+||+.|+|+||||+|+|||+++++. ++++.++|..++|..+.+.++++
T Consensus 173 ~F~~i~~~~i~~~L~~I~~~E~i~~~~~aL~~Ia~~a~G~mRdAlsiLdQ~~s~~~~~~it~~~v~~~~G~~~~~~l~~l 252 (557)
T PRK07270 173 EFKSIKTKAIREHLAWILDKEGISFEVEALNLIARRAEGGMRDALSILDQALSLSQDNQVTIAIAEEITGSISLLALDDY 252 (557)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHH
T ss_conf 08889999999999999998399869999999999779968789999999997179997679999999689989999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 87630136334678876543047621357877753489999997457412234499889999999986299899999999
Q 537021.9.peg.4 240 FGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQ 319 (369)
Q Consensus 240 l~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq 319 (369)
++++..+|...++..+++++..|.|+.+|+.+|+.++||++++|..++... ...+......++.+.++++++
T Consensus 253 ~~~~~~~d~~~~l~~~~~~~~~G~d~~~~~~dl~~~~Rdll~~k~~~~~~~--------~~~~~~~~~~~~~~~l~~~i~ 324 (557)
T PRK07270 253 VAALSQQDATKALAALETIFDSGKSMSRFATDLLTYLRDLLIVKAGGENTH--------HSAVFDENLSLSQDRIFQMID 324 (557)
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHH--------HHHHHHHHHCCCHHHHHHHHH
T ss_conf 999981799999999999998699999999999999997674122774555--------567678887069999999999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 99999998302788899999999999533049
Q 537021.9.peg.4 320 MILKGISEIEGFSRPMEAVEMVLIRLAHAVQL 351 (369)
Q Consensus 320 ~l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~~ 351 (369)
.+.++..+++.+.+|++.+|++++|||.....
T Consensus 325 ~l~~~~~~~~~~~~p~i~lE~~~~kl~~~~~~ 356 (557)
T PRK07270 325 VVTSSLPEIKKGTHPKIYAEMMTIRLAEIEQI 356 (557)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 99999999751478129999999998534565
No 18
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=100.00 E-value=0 Score=666.71 Aligned_cols=344 Identities=44% Similarity=0.718 Sum_probs=324.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
+|||+++++.|++++..||++|||||+||+|+||||+||+||++|||++. ++.+|||+|.+|+.|..|+|+|++||
T Consensus 18 vvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~----~~~ePC~~C~~Ck~I~~g~~~DviEi 93 (515)
T COG2812 18 VVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG----PTAEPCGKCISCKEINEGSLIDVIEI 93 (515)
T ss_pred HCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCC----CCCCCCHHHHHHHHHHCCCCCCCHHH
T ss_conf 63648999999999980842333651377776710499999999568898----77772253166686514886410113
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4 81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF 160 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~ 160 (369)
|+|||+|||+||+|++++.|+|++|+||||||||+||||++|+|||||||||||+||+|||+||+|+|+|+||+||||+|
T Consensus 94 DaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f 173 (515)
T COG2812 94 DAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRF 173 (515)
T ss_pred HHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHCCCCC
T ss_conf 64445486799999987246886666418998318764378888875111368667489985388676840455212202
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf 10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4 161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240 (369)
Q Consensus 161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll 240 (369)
+|++++.++|..+|..|+.+|++.+|++++..|++.|+||||||+|+|||+++++++.++.+.|..++|..+.+.+.+++
T Consensus 174 ~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~~~It~~~v~~~lG~~~~~~~~~~~ 253 (515)
T COG2812 174 DFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGEGEITLESVRDMLGLTDIEKLLSLL 253 (515)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf 22579999999999999874487547999999999828974567778999997067765699999996887789999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 763013633467887654304762135787775348999999745-7412234499889999999986299899999999
Q 537021.9.peg.4 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYI-PEMADTLLYSEAENARALQYSKEVSITFLSRFWQ 319 (369)
Q Consensus 241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~-~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq 319 (369)
+++..+|...++..++++++.|.+|..++.++..++|+++.++.. +........ +.......++.+++..++.++|+
T Consensus 254 ~~i~~~d~~~~~~~~~~l~~~G~~~~~~l~dl~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~l~~~~~ 331 (515)
T COG2812 254 EAILKGDAKEALRLINELIEEGKDPEAFLEDLLNFLRDLLLFKQTVPNELQLNTT--EIEERTKELASQISVLNLQRLYQ 331 (515)
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCH--HHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 9998227999999999999827489999999999999999998605403210101--46699999998558899999999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 9999999830278889999999999953304
Q 537021.9.peg.4 320 MILKGISEIEGFSRPMEAVEMVLIRLAHAVQ 350 (369)
Q Consensus 320 ~l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~ 350 (369)
.+..+..+++.+++|++.+||+++|++....
T Consensus 332 ~~~~~~~e~~~s~~~~~~~E~~lirl~~~~~ 362 (515)
T COG2812 332 LLLPGLKELKRSLSPRLGLEMTLIRLLEAAP 362 (515)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
T ss_conf 9999999861386625799999999875035
No 19
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=663.58 Aligned_cols=338 Identities=37% Similarity=0.607 Sum_probs=322.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
||||+++++.|++++.+||+||||||+||+|+||||+||+||++|||+++... +|||.|.+|+.+..|+|||++|+
T Consensus 16 vIGQe~iv~~L~nAi~~~Rl~HAYLFsGPrGvGKTt~ArifAkaLnC~~~~~~----~PCg~C~sC~~i~~g~hpDViEi 91 (523)
T PRK08451 16 LIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFSRALVCEQGPSS----TPCGTCAQCQAALEGRHIDIIEM 91 (523)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHCCCCCCEEEE
T ss_conf 04949999999999985996715875789986889999999999759999998----98887888999864899985510
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4 81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF 160 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~ 160 (369)
|++|++|||+||+++++++++|+.|+||||||||||+||.+|||||||||||||++|+|||+||+|++||+||+||||+|
T Consensus 92 Daasn~gID~IReLie~~~~~P~~gryKV~IIDEah~Lt~~A~NALLKTLEEPP~~vvFILaTTep~KLp~TIlSRCQ~f 171 (523)
T PRK08451 92 DAASNRGIDDIRNLIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHF 171 (523)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCHHHCHHHHHHHHHCC
T ss_conf 55333689999999997235886797279998260304899999999970389878379997599476848887420311
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf 10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4 161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240 (369)
Q Consensus 161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll 240 (369)
+|++++..+|..+|++|+.+|++++|++++.+||+.|+||||||+++|||+++++++.++.++|..++|..+++.+.+++
T Consensus 172 ~Fk~I~~~~I~~~L~~I~~~E~i~~e~~AL~~IA~~a~GslRDalslLdQ~i~~~~~~i~~~~v~~~lG~~d~~~~~~l~ 251 (523)
T PRK08451 172 RFKQIPQNSIISHLKTILNKEGVSYEPEALEILARSGSGSLRDTLTLLDQAIIFCKNAITESKVADMLGLLDPSKIEDFF 251 (523)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf 03379999999999999998399879999999999778948689879999998479987799999985888999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 76301363346788765430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM 320 (369)
Q Consensus 241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~ 320 (369)
+++.++|..++++.+..+ .|+++..++++++.++|+.++.+. ..++.--+.|+|++
T Consensus 252 ~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~r~~~i 307 (523)
T PRK08451 252 QAILNKDKEKLFELLAEL--EDYEAEMVLDEMLLFLKEKLLSKD----------------------SEFSILIYERFFRI 307 (523)
T ss_pred HHHHHCCHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHCCC----------------------CCCCHHHHHHHHHH
T ss_conf 999945899999999998--531899999999999999971578----------------------54378999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 9999998302788899999999999533049998999997655554
Q 537021.9.peg.4 321 ILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSPEEIARYIVEEKK 366 (369)
Q Consensus 321 l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~~~s~~~~~~~~~~~~k 366 (369)
+.++...++.++|+..++++++++|++....+.+++.++.+..++.
T Consensus 308 l~~~~~~~~~~~~~~~~l~~~~~km~e~~~~~~~~~~i~~l~~~~~ 353 (523)
T PRK08451 308 LSSAKSLLKEGADDGFVLLLMLFKMKEALKLKEIDDAIEELEQEKP 353 (523)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
T ss_conf 9999998630788612499999999860365888999999862577
No 20
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=632.83 Aligned_cols=338 Identities=33% Similarity=0.541 Sum_probs=314.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
||||++++++|++++.+||+||||||+||+|+||||+||+||++|||.++... ..|||.|.+| .++++|++|+
T Consensus 20 VIGQe~Vv~tL~nAI~~gRIaHAYLF~GPRGvGKTT~ARIfAKaLNC~~~~d~---~~pC~~C~~~----~~~s~DViEI 92 (718)
T PRK07133 20 IKGQDHIIETLKNIIKSGKISHAYLFSGPHGTGKTSVAKIFANALNCSHKTDL---IEPCQNCIEN----FNNNLDIIEM 92 (718)
T ss_pred HCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC---CCCCCCHHHC----CCCCCCEEEE
T ss_conf 22859999999999974997505862389986889999999999679999999---9977021430----4789873775
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4 81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF 160 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~ 160 (369)
||||++|||+||++++.++++|++|+|||||||||||||.+|||||||||||||+||+|||+||+|++||+||+||||+|
T Consensus 93 DAASn~gVDdIReLie~v~y~P~~gkYKVyIIDEvHMLS~~AfNALLKtLEEPP~hvvFILaTTep~KIP~TIlSRCQrF 172 (718)
T PRK07133 93 DAASNNGVDEIRELRENVKNLPQISKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTDVQKIPLTILSRVQRF 172 (718)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCHHHCCHHHHHCCEEE
T ss_conf 45566888999999998255887787249999662007999999999850279878279997088254848774122033
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf 10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4 161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240 (369)
Q Consensus 161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll 240 (369)
+|++++.++|..+|+.|+.+|++++|++|+.+||+.|+||||||+++|||++++++++|+.++|.+++|+++.+...+++
T Consensus 173 dFkrI~~~~I~~~L~~I~~kE~I~~e~eAL~lIA~~a~GSmRDAlSlLDQv~~f~ng~it~k~v~~~~Gl~~~~~~i~~~ 252 (718)
T PRK07133 173 NFRRISEDVIVHQLENILEKEKIKYEKNALKLIASLASGSLRDALSIADQVSIFGNGNITLKNVNELFGLVSNEIVINFL 252 (718)
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf 58889999999999999998599778999999999768848889879999998548987299999996765579999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 76301363346788765430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM 320 (369)
Q Consensus 241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~ 320 (369)
..+..+|...++..++++...|.|+.+++.+|+..++|.++++-..+..-+..++.++...+ .++....+...+.
T Consensus 253 n~~~~~~~~~~l~~l~~~~~~gid~~~l~~~li~~~kd~ii~~~t~~~~ll~~~~~~~l~~l-----kId~~fay~~~e~ 327 (718)
T PRK07133 253 NLLYSKNIKEVLEKLNQLKFQGIDPELLVISLINLVKDFIVFKKTKDNSLLEYYSEFDLENL-----KISIDFAYKFIEE 327 (718)
T ss_pred HHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEECCCCHHHHHHCCHHHHHHH-----EECHHHHHHHHHH
T ss_conf 99986169999999999997588999999999999988832402574079875258878541-----2009999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 999999830278889999999999953304
Q 537021.9.peg.4 321 ILKGISEIEGFSRPMEAVEMVLIRLAHAVQ 350 (369)
Q Consensus 321 l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~ 350 (369)
+-....+|+.+-.|...+|++++||++...
T Consensus 328 l~~~l~~l~~se~p~~~~Ei~iikl~~~~~ 357 (718)
T PRK07133 328 LMSLLKDLKFSEFPFLTLEIFILKLLSLSN 357 (718)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 999999877403807889999999987516
No 21
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=626.46 Aligned_cols=344 Identities=33% Similarity=0.514 Sum_probs=312.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
||||+++++.|++++.+||+||||||+||+|+||+|+||+||++|||.++... +|||.|++|+.+..|+|||++|+
T Consensus 18 IIGQe~iv~~L~nAI~~~RiaHAYLFsGPrGvGKTTlArifAkaLnC~~~~~~----dpCg~C~sC~~I~~g~h~DviEI 93 (613)
T PRK05896 18 IIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDG----DCCNSCSVCESINTNQSVDIVEL 93 (613)
T ss_pred HCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHCCCCCCEEEE
T ss_conf 23829999999999984997622775589984889999999999669999999----98888878999856999986884
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4 81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF 160 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~ 160 (369)
|++|++|||+||++++.++++|+.|+|||||||+||+||.+|||||||||||||++|+|||+|++|++|||||+||||+|
T Consensus 94 daasn~gIDeIReLie~~~~~P~~gkyKV~IIDEah~Ln~~AaNALLKtLEEPP~~viFIL~Ttep~KLLpTIlSRCQrf 173 (613)
T PRK05896 94 DAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRY 173 (613)
T ss_pred ECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCHHHHHCCCCE
T ss_conf 06555788999999997085875799459998162217999999999853489878379998288154937664035500
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf 10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4 161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240 (369)
Q Consensus 161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll 240 (369)
+|++++.++|..+|+.|+++|++++|++|+.+||+.|+||||||+|+|||+++++++.|+.++|.+++|..+.+..++++
T Consensus 174 ~Fkri~~~~I~~~L~~I~~kE~i~ie~~AL~~Ia~~adGs~RDAlslLdQ~~~~~~~~it~~~v~~~~g~~~~~~~~~~~ 253 (613)
T PRK05896 174 NFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNKKIDIEDINKTFGLVDNNKKINLI 253 (613)
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf 17889989999999999997399878999999999768848789889999998356886299999996777689999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH-HHCC-HHHHHHHH
Q ss_conf 763013633467887654304762135787775348999999745741223449988999999998-6299-89999999
Q 537021.9.peg.4 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYS-KEVS-ITFLSRFW 318 (369)
Q Consensus 241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a-~~i~-~~~L~~~l 318 (369)
+++.++|....+..++++...|.|+..++.+|+..++|++.++...+..-+...+.++...+.-.. +.+. ......++
T Consensus 254 ~~i~~~d~~~~~~~~~~~~~~g~~~~~~~~~li~~l~d~~~y~~~~~~~~l~~~~~e~~~~~~~~~~k~l~~~f~~n~~l 333 (613)
T PRK05896 254 ELIQKNDIEELRNLINELESKGINFEAFCRDLINLLIDLLVYQKTKNINLLKKLSKEQLKTLNLEKQKLLSIEFNTNFLL 333 (613)
T ss_pred HHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99985589999999999998067899999999999999987332275788753789998887655656643201278999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 999999998302788899999999999533
Q 537021.9.peg.4 319 QMILKGISEIEGFSRPMEAVEMVLIRLAHA 348 (369)
Q Consensus 319 q~l~~a~~~Lk~n~np~L~lE~lLlkL~~~ 348 (369)
..+......++.+.|+.-.+|+.+.++..-
T Consensus 334 ~~~~~~~~~~~~~~n~~~~~~i~~~~~in~ 363 (613)
T PRK05896 334 NNFVSLFNNLKKSVNQVKEFEIYVYKIFNQ 363 (613)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_conf 999999999998744026899999999850
No 22
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=0 Score=555.27 Aligned_cols=334 Identities=22% Similarity=0.357 Sum_probs=266.7
Q ss_pred CCCHHHHHHHHHHHHHCCC------------CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 9284899999999998287------------6706201078798888999999999614687778866587899977999
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGR------------IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQA 68 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~------------~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~ 68 (369)
||||+++++.|+|+++++| ++|||||+||+|+||+++|++||++|||+++.. .|||.|.+|++
T Consensus 7 ivGQe~v~~~L~~A~~~~R~~~~~~~~~~~~~~HAyLF~Gp~G~Gk~~~A~~~A~~l~C~~~~~-----~~cg~C~~C~~ 81 (395)
T PRK07940 7 LVGQDAVVAELRAAARAARADSAHSAAAGSGMTHAWLFTGPPGSGRSNAARAFAAALQCTDPGV-----PGCGECRACRT 81 (395)
T ss_pred HCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCC-----CCCCCCHHHHH
T ss_conf 1592999999999998363434433334687660376368998788999999999966999999-----99987878999
Q ss_pred HHCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 9779877822245332-233455566555445654204652377511566480016789999972122111466506754
Q 537021.9.peg.4 69 IIRGNHVDVVELDAAS-HTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIR 147 (369)
Q Consensus 69 i~~~~~~d~~e~~~~s-~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~ 147 (369)
|.+|+||||+++.+.+ .++||+||+++++++++|++|+|||||||+||+||.+|+|||||||||||++|+|||+|++|+
T Consensus 82 i~~g~hpDv~~i~p~~~~i~id~iR~l~~~~~~~p~~~~~kv~ii~~a~~m~~~a~NalLKtLEEPp~~~~fiL~t~~~~ 161 (395)
T PRK07940 82 VLAGTHPDVRVVVPEGLSIGVDEVREIVQIAARRPTTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSVE 161 (395)
T ss_pred HHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHH
T ss_conf 87689987189826877688999999999985273037955999807787489999999985217888869998739978
Q ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCH-------------
Q ss_conf 3303567543332102454001356787643101345625664456531676420011000111000-------------
Q 537021.9.peg.4 148 KIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIAR------------- 214 (369)
Q Consensus 148 ~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~------------- 214 (369)
++||||+||||+++|++++.++|.++|.+ ...++++....+|+.|+|++.+|+.+.......
T Consensus 162 ~llpTI~SRcq~~~f~~~~~~~i~~~L~~-----~~gi~~~~A~~aA~~s~G~igrA~~la~d~~~~~~R~~~l~l~~~~ 236 (395)
T PRK07940 162 DVLPTIRSRCRHVALRTPSVEAVADVLVR-----RDGVDPETAQWAARASGGHIGRARRLATDEEARARRARALRLPLRL 236 (395)
T ss_pred HHHHHHHHHHEECCCCCCCHHHHHHHHHH-----CCCCCHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 74468874400023799999999999987-----0199989999999980898899999806888999999999999970
Q ss_pred ---------HHCC--CCHHHHHHCCCCCCHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHCC-----CC-HH
Q ss_conf ---------0001--2103220001356777778888763013-----------6334678876543047-----62-13
Q 537021.9.peg.4 215 ---------CNDK--IVTSSVRLMLALADRNRIMDLFGYLIKG-----------DIINVLQEFSSQYDSG-----VN-PS 266 (369)
Q Consensus 215 ---------~~~~--i~~e~v~~llg~~~~~~i~~Ll~ai~~~-----------d~~~al~~l~~l~~~g-----~d-~~ 266 (369)
..+- ...+.+....+..+.....++..++.-+ ....+++.+++..+.. .| ..
T Consensus 237 ~~~~~al~~a~~Ll~~~~~~~~~~~~~~d~~e~e~l~~~lg~~~~~~~~~~~~~~~~~~l~~le~~qK~r~~r~~~D~Ld 316 (395)
T PRK07940 237 ARVSDAVAAAEELVKAAEAEAKALTAERDEAETEELRTALGAGGTGKGTAKAPRGAAGALKDLEKRQKRRATRASRDALD 316 (395)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 37168999999999999999999888776899999999843443330133211778999999999876677777777899
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 57877753489999997457412234499889999999986299899999999999999983027888999999999995
Q 537021.9.peg.4 267 VILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLA 346 (369)
Q Consensus 267 ~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~ 346 (369)
.+|.+|..||||+++++... ....++++..+.+..++.+++.+++.++++.+.+++..|+.|+||+|+||+++++|.
T Consensus 317 ~~L~~L~~~~RD~L~~~~g~---~~~lin~d~~~~l~~~A~~~s~~~ll~~l~~i~~ar~~L~~Nvnp~L~LE~lll~L~ 393 (395)
T PRK07940 317 RALIDLAGLYRDVLLVQLGA---GVGLVHPDMADRLAELAARSTPEGLLRCIDAVLACREALAVNVKPLLAVEAMVAALR 393 (395)
T ss_pred HHHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999999999986089---735558669999999997499999999999999999998845997999999999986
Q ss_pred H
Q ss_conf 3
Q 537021.9.peg.4 347 H 347 (369)
Q Consensus 347 ~ 347 (369)
.
T Consensus 394 q 394 (395)
T PRK07940 394 Q 394 (395)
T ss_pred H
T ss_conf 4
No 23
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=0 Score=542.28 Aligned_cols=316 Identities=23% Similarity=0.321 Sum_probs=271.7
Q ss_pred CCC-HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf 928-4899999999998287670620107879888899999999961468777886658789997799997798778222
Q 537021.9.peg.4 1 MIG-QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVE 79 (369)
Q Consensus 1 iiG-q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e 79 (369)
||| |++|++.|++++.+||+||||||+||+|+||+++|++||++|+|+++..+ +|||.|.+|+++.+|+|||+++
T Consensus 7 ~~~~Q~~i~~~L~~~i~~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~LlC~~~~~~----~~Cg~C~~C~~~~~~~HPD~~~ 82 (329)
T PRK08058 7 LTALQPIVVKMLQNSIAKNRLAHAYLFEGAKGTGKKATALWLAKSLFCLERNGV----EPCGTCTNCKRIESGNHPDVHL 82 (329)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHCCCCCCEEE
T ss_conf 883189999999999985996615655789998899999999999739999999----9887888999987699997677
Q ss_pred CCCCCC-CCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 453322-3345556655544565420465237751156648001678999997212211146650675433035675433
Q 537021.9.peg.4 80 LDAASH-TSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQ 158 (369)
Q Consensus 80 ~~~~s~-~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq 158 (369)
+.+.++ ++|||||++.++++++|++|+|||||||+||+||.+|||||||||||||++|+|||+|+++++|||||+||||
T Consensus 83 i~p~~~~i~idqiR~L~~~~~~~p~~g~~KV~II~~Ae~m~~~AaNALLKtLEEPp~~t~fIL~t~~~~~lLpTI~SRCq 162 (329)
T PRK08058 83 VAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGDTTAILLTENKHQILPTILSRCQ 162 (329)
T ss_pred ECCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCE
T ss_conf 45661407799999999996438757886799973477629999999999864689786799872996664368863142
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHH
Q ss_conf 32102454001356787643101345625664456531676420011000111000000121032200013567777788
Q 537021.9.peg.4 159 RFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMD 238 (369)
Q Consensus 159 ~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~ 238 (369)
+++|+|++.+++.++|.+ +|+ +++...+++..+ |++++|+.+.+. +. ..+ .+..+.+
T Consensus 163 ~i~f~~~~~~~i~~~L~~----~~i--~~~~a~l~a~~~-gs~~~A~~l~~~------~~-~~~---------~~~~~~~ 219 (329)
T PRK08058 163 VVEFRPLPPESLIQRLQE----EGI--SESLATLLAQLT-NSVEEALALSED------DW-FAQ---------ARALVIK 219 (329)
T ss_pred EEECCCCCHHHHHHHHHH----CCC--CHHHHHHHHHHC-CCHHHHHHHHCC------HH-HHH---------HHHHHHH
T ss_conf 565889999999999998----799--989999999878-999999988426------15-899---------9999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHH
Q ss_conf 88763013633467887654304---762135787775348999999745741223449988999999998629989999
Q 537021.9.peg.4 239 LFGYLIKGDIINVLQEFSSQYDS---GVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLS 315 (369)
Q Consensus 239 Ll~ai~~~d~~~al~~l~~l~~~---g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~ 315 (369)
+++.+..++....+...+.+... ..+...+|+.+..|+||++..+...+ ......+....+..++++++.+.+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~rD~l~~~~~~~---~~~~~~d~~~~l~~~a~~~~~~~l~ 296 (329)
T PRK08058 220 LYEALHKGDLLSFVFVQTKWMPLFKEKDQQQLGLDLLLLIYRDLLYVQLGEE---DRLVFREQKEELQQLALSYSQQQIV 296 (329)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHCHHHHHHHHHHHHCCCHHHHH
T ss_conf 9999976889999999999998701889999999999999999998741752---0011799999999998539999999
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 9999999999983027888999999999995
Q 537021.9.peg.4 316 RFWQMILKGISEIEGFSRPMEAVEMVLIRLA 346 (369)
Q Consensus 316 ~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~ 346 (369)
++++.+.++++.+++|+||+++||+++++|.
T Consensus 297 ~~~~~i~e~~~~l~~N~N~~L~lE~lll~L~ 327 (329)
T PRK08058 297 AALELILEAKRRLNSNVNFQLVMEQLVLRLQ 327 (329)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999999999855899999999999642
No 24
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=0 Score=514.79 Aligned_cols=305 Identities=22% Similarity=0.334 Sum_probs=272.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
||||+++++.|++++.+||+||||||+||+|+||+++|++||++++|.... ++|||++++
T Consensus 6 iiGq~~i~~~L~~~i~~~rl~HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~--------------------~~~~D~~~~ 65 (313)
T PRK05564 6 IIGHENIKNRIDNSIIKGKFSHASLIVGEDGIGKSILAKEIANKILGKSEQ--------------------REYVDIIEY 65 (313)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC--------------------CCCCCEEEE
T ss_conf 268299999999999879987504327999850999999999998289977--------------------889865886
Q ss_pred CCCC--CCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 5332--23345556655544565420465237751156648001678999997212211146650675433035675433
Q 537021.9.peg.4 81 DAAS--HTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQ 158 (369)
Q Consensus 81 ~~~s--~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq 158 (369)
++.+ .+||||||+++++++++|++|+|||||||+||+||.+|||||||||||||++|+|||+|++|++|||||+||||
T Consensus 66 ~~~~~~~I~vd~IR~l~~~~~~~p~~g~~KV~II~~ae~m~~~AaNALLKtLEEPP~~t~fIL~t~~~~~lLpTI~SRCQ 145 (313)
T PRK05564 66 KPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYKSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQ 145 (313)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHCCCCCCCCEEEEEEECCHHHCCCHHHCCCE
T ss_conf 33225699989999999998408625895699980777758999999845503689985899864983547577870653
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHH
Q ss_conf 32102454001356787643101345625664456531676420011000111000000121032200013567777788
Q 537021.9.peg.4 159 RFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMD 238 (369)
Q Consensus 159 ~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~ 238 (369)
+++|+|++.+++.++|.+ +.-..+++....+++.|+|+++.|..+++. +. ...+ ++.+.+
T Consensus 146 ~~~f~~l~~~~i~~~L~~----~~~~~~~~~~~~~~~~s~G~~~~a~~~~~~------~~-----~~~~-----~~~~~~ 205 (313)
T PRK05564 146 IYKLNRLSKEDIEKFISY----KYNDIDEENKNSAIAFSDGIPGKVEKFIED------DS-----LKDI-----RNMSLE 205 (313)
T ss_pred EEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHHHH------HH-----HHHH-----HHHHHH
T ss_conf 566899899999999998----625899999999999829987999998405------79-----9999-----999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 88763013633467887654304762135787775348999999745741223449988999999998629989999999
Q 537021.9.peg.4 239 LFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFW 318 (369)
Q Consensus 239 Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~l 318 (369)
+++.+..++...++.+.+.+.+.+.++..+++.+..|+||+++++..+. ....++.+....+..+++.++...+.+++
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~rD~l~~k~~~~--~~~~~n~d~~~~l~~~a~~~~~~~l~~~~ 283 (313)
T PRK05564 206 ILKDIDKSNINIIIKYENFLISYKENWEEILTCILSYIRDSLLFKETGN--NELIINVDKIEDIKEISEKYSYKKLNKMI 283 (313)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC--CCCEECHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 9999986799999999999998693499999999999999998515598--32016888999999998549999999999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999830278889999999999953
Q 537021.9.peg.4 319 QMILKGISEIEGFSRPMEAVEMVLIRLAH 347 (369)
Q Consensus 319 q~l~~a~~~Lk~n~np~L~lE~lLlkL~~ 347 (369)
+.+.++++++++|+||+++||.++++|..
T Consensus 284 ~~l~~a~~~l~~n~N~~L~le~lllkl~e 312 (313)
T PRK05564 284 EIINDARNNLSSNTNSTLVFDSMLIKMQE 312 (313)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999999987459989999999998843
No 25
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=0 Score=497.23 Aligned_cols=309 Identities=21% Similarity=0.264 Sum_probs=258.5
Q ss_pred HHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC---CCCCCH
Q ss_conf 99998287670620107879888899999999961468777886658789997799997798778222453---322334
Q 537021.9.peg.4 12 TNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDA---ASHTSI 88 (369)
Q Consensus 12 ~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~---~s~~~i 88 (369)
++.+.+||+||||||+||+|+||+++|+.||++|+|+++... +|||.|++|+++.+|+|||++++.+ .+.|||
T Consensus 13 ~~l~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~LlC~~~~~~----~~Cg~C~sC~~~~~~~HPD~~~i~pe~~~~~I~I 88 (328)
T PRK05707 13 QQLAGRGRHAHAYLLHGPAGIGKRALAERLAAFLLCEAPQGG----GACGSCKGCQLLAAGSHPDNFVLEPEEADKPIKV 88 (328)
T ss_pred HHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCC----CCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCH
T ss_conf 999977982204644799986799999999999848999998----9998888999987589998799842666776979
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCH
Q ss_conf 55566555445654204652377511566480016789999972122111466506754330356754333210245400
Q 537021.9.peg.4 89 DDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIG 168 (369)
Q Consensus 89 d~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~ 168 (369)
||||+++++++++|++|+|||||||+||+||.+|||||||||||||++|+|||+|++|++|||||+||||++.|++++.+
T Consensus 89 dqIR~l~~~~~~~~~~g~~KV~iI~~Ae~m~~~AaNALLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~p~~e 168 (328)
T PRK05707 89 DQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGQTVLLLISHQPSRLLPTIKSRCQQLACPLPSNE 168 (328)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEHHHHHCHHHHHHHHHHHHCCCCCEEEEEEECCHHHCHHHHHHCCEEEECCCCCHH
T ss_conf 99999999983176678957999502877389999999998507898759998609934482588741413348998999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCH
Q ss_conf 13567876431013456256644565316764200110001110000001210322000135677777888876301363
Q 537021.9.peg.4 169 DLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLFGYLIKGDI 248 (369)
Q Consensus 169 ~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll~ai~~~d~ 248 (369)
++.+||.+-. .+.+.+....+++.++|++.+|+.+.++- ... .+..+.+.+..+..+..
T Consensus 169 ~~~~~L~~~~----~~~~~~~a~~ll~la~G~p~~A~~l~~~~-------~~~----------~r~~~~~~l~~l~~~~~ 227 (328)
T PRK05707 169 PSLQWLQQAL----PESDAEERIELLTLAAGSPLRALQLHAQG-------VRE----------QRARVVDGVKKLLKQQQ 227 (328)
T ss_pred HHHHHHHHHC----CCCCHHHHHHHHHHCCCCHHHHHHHHCCC-------HHH----------HHHHHHHHHHHHHHCCC
T ss_conf 9999999755----65578999999997499999999874866-------899----------99999999999983878
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 34678876543047621357877753489999997457412234499889999999986299899999999999999983
Q 537021.9.peg.4 249 INVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQMILKGISEI 328 (369)
Q Consensus 249 ~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~l~~a~~~L 328 (369)
......+.+.+ .+...+++.+..|+||++.++..++. ....+.+....+..+|++++.+.+..+++.+.++++.+
T Consensus 228 -~~~~~~~~~~k--~~~~~~l~~l~~~~~D~l~~~~~~~~--~~l~~~d~~~~i~~la~~~s~~~l~~~~~~l~~~r~~l 302 (328)
T PRK05707 228 -SASQLAESWLK--VPLPLLFDWFCDWAHLILRYQLTQDE--EGLGLADMRKVLQYLAQKSPQAKVLALQQWLLEQRQKV 302 (328)
T ss_pred -CHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHCCCH--HHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf -89999999750--57999999999999999999825971--41047889999999987299999999999999999998
Q ss_pred --HCCCCHHHHHHHHHHHHHHHCC
Q ss_conf --0278889999999999953304
Q 537021.9.peg.4 329 --EGFSRPMEAVEMVLIRLAHAVQ 350 (369)
Q Consensus 329 --k~n~np~L~lE~lLlkL~~~~~ 350 (369)
..|+||+|++|.++++++.+..
T Consensus 303 ~~~~NvN~~L~lE~Lll~~~~L~~ 326 (328)
T PRK05707 303 LGKANLNRVLLLEALLVQWAGLPG 326 (328)
T ss_pred HHCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 636998889999999999857447
No 26
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=0 Score=466.87 Aligned_cols=311 Identities=22% Similarity=0.282 Sum_probs=260.2
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 48999999999982876706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4 4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA 83 (369)
Q Consensus 4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~ 83 (369)
|....+.|.+++..||+||||||+||+|+||.++|+.||+.|+|+++... ++||+|.+|+.+.+|+|||++++.+.
T Consensus 7 l~~~~~~l~~~~~~~rl~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~----~~Cg~C~~C~l~~~~~HPD~~~i~pe 82 (334)
T PRK07993 7 LRPDYEKLVGSYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGH----KSCGHCRGCQLMQAGTHPDYYTLTPE 82 (334)
T ss_pred CHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHCCCCCCEEEECCC
T ss_conf 78999999999985981046754799998899999999999818999999----99999978999866899984775342
Q ss_pred ---CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf ---22334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4 84 ---SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF 160 (369)
Q Consensus 84 ---s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~ 160 (369)
..|||||||++.++++++|++|+|||+|||+||+||.+|||||||||||||++|+|||+|++|++|+|||+||||++
T Consensus 83 ~~~~~I~IdqIR~l~~~~~~~~~~g~~kV~iI~~Ae~mn~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRCq~~ 162 (334)
T PRK07993 83 KGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPEKTWFFLACREPARLLATLRSRCRLH 162 (334)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCCHHHHHCCCC
T ss_conf 23455999999999999843665699479997667775999999999861279988499986698565723887523041
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHH-H
Q ss_conf 102454001356787643101345625664456531676420011000111000000121032200013567777788-8
Q 537021.9.peg.4 161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMD-L 239 (369)
Q Consensus 161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~-L 239 (369)
.|++++.+++.+||.+ +...+++.+...++.++|++..|+.+++. +.. + .++.+.+ +
T Consensus 163 ~~~~~~~~~~~~wL~~-----~~~~~~~~~~~al~la~Gspl~A~~l~~~-----~~~---~---------~r~~l~~~l 220 (334)
T PRK07993 163 YLAPPPEQYALTWLSR-----EVTMSQEALLAALRLSAGAPGAALALLQP-----ERW---Q---------QREALCQAL 220 (334)
T ss_pred CCCCCCHHHHHHHHHH-----HCCCCHHHHHHHHHHCCCCHHHHHHHHCC-----CHH---H---------HHHHHHHHH
T ss_conf 5899799999999987-----36898899999999849989999998256-----589---9---------999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 87630136334678876543047621357877753489999997457412234499889999999986299899999999
Q 537021.9.peg.4 240 FGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQ 319 (369)
Q Consensus 240 l~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq 319 (369)
...+..+|....+..+. . .+....++.+..+++|++..+.... ..++.+....+..++++++...+..+++
T Consensus 221 ~~~l~~~d~~~ll~~l~---~--~~~~~~L~wl~~ll~D~l~~~~~~~----~l~n~D~~~~i~~la~~~s~~~L~~~~~ 291 (334)
T PRK07993 221 AYSLPSGDWYSLLPALN---H--EQAPARLHWLATLLMDALKRQHGAA----QVTNVDQPPLVAQLANHLSPARLQAILG 291 (334)
T ss_pred HHHHCCCCHHHHHHHHH---H--HHHHHHHHHHHHHHHHHHHHHCCCC----CEECHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99870367999999971---6--3489999999999999999860853----0148779999999985099999999999
Q ss_pred HHHHHHHHHHC--CCCHHHHHHHHHHHHHHHC
Q ss_conf 99999998302--7888999999999995330
Q 537021.9.peg.4 320 MILKGISEIEG--FSRPMEAVEMVLIRLAHAV 349 (369)
Q Consensus 320 ~l~~a~~~Lk~--n~np~L~lE~lLlkL~~~~ 349 (369)
.+.+++..+.+ |+|+++++|.+++++-+..
T Consensus 292 ~i~~~r~~L~~~~NlN~qLlLE~lll~~~~~l 323 (334)
T PRK07993 292 DVCHCREQLLSVTGVNRELLLTDLLLRIEHYL 323 (334)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
T ss_conf 99999999752689999999999999999973
No 27
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=0 Score=465.07 Aligned_cols=312 Identities=21% Similarity=0.251 Sum_probs=262.3
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 48999999999982876706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4 4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA 83 (369)
Q Consensus 4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~ 83 (369)
|+...+.|.+++.+||+||||||+||+|+||+++|+.||+.|+|+++... .|||.|.+|+.+..|+|||++++++.
T Consensus 6 l~~~~~~l~~~~~~~r~~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~----~~Cg~C~sC~l~~~g~HPD~~~i~~~ 81 (324)
T PRK06871 6 LQPIYQQITQTFLQGRGHHALLFKADSGLGTEQLIRALAQWLMCQAPGDE----QPCGQCHSCHLFQAGNHPDFHILEPI 81 (324)
T ss_pred CHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCC----CCCCCCHHHHHHHCCCCCCEEEEECC
T ss_conf 57999999999986995437876899997899999999999828999999----98888989999973899987998467
Q ss_pred --CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf --223345556655544565420465237751156648001678999997212211146650675433035675433321
Q 537021.9.peg.4 84 --SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFD 161 (369)
Q Consensus 84 --s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~ 161 (369)
..||||+||+++++++.+|.+|++||+||++||+||.+|+|||||||||||++|+|||+|++|++|+|||+||||+++
T Consensus 82 ~~k~I~vd~IR~l~~~~~~~~~~g~~KV~iI~~ae~m~~~AaNALLKtLEEPp~~~~fiL~t~~~~~ll~TI~SRCq~~~ 161 (324)
T PRK06871 82 DGKDIGVDQVREINEKVSQFAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSASLLATIYSRCQTWL 161 (324)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHCCCCEE
T ss_conf 88878899999999998646220596699975888857999999999833898783899987870103240862661200
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 02454001356787643101345625664456531676420011000111000000121032200013567777788887
Q 537021.9.peg.4 162 LHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLFG 241 (369)
Q Consensus 162 f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll~ 241 (369)
|++++.+++.+||.+ ....+...+...++.++|++..|+.++++ +.+... +..+..+..
T Consensus 162 ~~~p~~~~~~~wL~~-----~~~~~~~~~~~al~~~~g~pl~A~~~~~~------~~~~~r----------~~~~~~l~~ 220 (324)
T PRK06871 162 IHVPEEQIALDWLQA-----QSSGEIQEIQTALRINYGRPLLALTFLEQ------GLLEQR----------KTFLRQFWL 220 (324)
T ss_pred CCCCCHHHHHHHHHH-----HCCCCHHHHHHHHHHCCCCHHHHHHHHCC------CHHHHH----------HHHHHHHHH
T ss_conf 899499999999997-----46887299999999769987999998687------799999----------999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 63013633467887654304762135787775348999999745741223449988999999998629989999999999
Q 537021.9.peg.4 242 YLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQMI 321 (369)
Q Consensus 242 ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~l 321 (369)
.+.++|....+..++ ..+....++.|..|++|++.++.... ...++.|....+..+|.+++.+.|...++.+
T Consensus 221 ~~~~~~~~~ll~~~~-----k~~~~~~L~wL~~~l~D~lk~k~g~~---~~~in~D~~~~i~~la~~~s~~~L~~~~~~l 292 (324)
T PRK06871 221 FYRRRSPLELLPLFD-----KEKVLQQLDWLLAFLSDALKAKLDID---SGWINQDLGRGILQFSQQQSAQGLLKAIQIM 292 (324)
T ss_pred HHCCCCHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHCCCC---CCEECHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 971689999999975-----14588899999999999999844887---5607588999999999865999999999999
Q ss_pred HHHHHHHHC--CCCHHHHHHHHHHHHHHH
Q ss_conf 999998302--788899999999999533
Q 537021.9.peg.4 322 LKGISEIEG--FSRPMEAVEMVLIRLAHA 348 (369)
Q Consensus 322 ~~a~~~Lk~--n~np~L~lE~lLlkL~~~ 348 (369)
.+++.++.. |.|..|+++..|+|+...
T Consensus 293 ~~~r~~L~~~~~lN~eLll~~~L~~l~~~ 321 (324)
T PRK06871 293 QKVRSDLLQINAVNQELILLDGLTRLVTE 321 (324)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999984457878999999999999998
No 28
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=0 Score=465.32 Aligned_cols=326 Identities=21% Similarity=0.275 Sum_probs=270.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC------CCHHHHHHHCCCC
Q ss_conf 9284899999999998287670620107879888899999999961468777886658789------9977999977987
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEG------FGEHCQAIIRGNH 74 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~------~c~~c~~i~~~~~ 74 (369)
||||+.+++.|.+++++||+||||||+||+|+||+|+|++||+.|+|+......++..+|. .++.|++|..++|
T Consensus 19 liGqe~~~~~L~~a~~~grl~HA~Lf~Gp~GiGK~tlA~~~A~~ll~~~~~~~~~~~~~~~~l~~~~~~p~~r~i~~~~h 98 (363)
T PRK07471 19 LFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDAVFPPPASLAVDPDHPVARRIAAGAH 98 (363)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCCC
T ss_conf 16819999999999985997645876799981889999999999857999777776787053125877728999952699
Q ss_pred CCCCCCCCC---------CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 782224533---------22334555665554456542046523775115664800167899999721221114665067
Q 537021.9.peg.4 75 VDVVELDAA---------SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTE 145 (369)
Q Consensus 75 ~d~~e~~~~---------s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~ 145 (369)
||+++++.. +.|+||+||+++++++++|.+|+|||+|||+||+||.+|||||||+|||||++|+|||+|++
T Consensus 99 pdl~~i~r~~d~k~~~~~~~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~mn~~aaNALLK~LEEPP~~t~fiLit~~ 178 (363)
T PRK07471 99 GGLLTLERSWNEKGKRLRTVITVDEVRETIGFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLLLLVSHA 178 (363)
T ss_pred CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf 98466762001133321244539999999999724852489669998687873889999999972158988389986399
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHH
Q ss_conf 54330356754333210245400135678764310134562566445653167642001100011100000012103220
Q 537021.9.peg.4 146 IRKIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVR 225 (369)
Q Consensus 146 ~~~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~ 225 (369)
|++|||||+||||+++|+|++++++.++|.+ .++..++++.+..+++.|+||+|+|+.+++. ++ +..
T Consensus 179 ~~~llpTI~SRCq~~~~~~l~~~~~~~~L~~---~~~~~~~~~~~~~la~~a~Gs~~~Al~l~~~-----~~-~~l---- 245 (363)
T PRK07471 179 PARLLPTIRSRCRKLRLRPLAPEDVIAALAE---AGGPALDDAELAALAALAEGSVGRALRLAGG-----DG-LAL---- 245 (363)
T ss_pred HHHCHHHHHHHCCCCCCCCCCHHHHHHHHHH---HCCCCCCHHHHHHHHHHCCCCHHHHHHHHCC-----CH-HHH----
T ss_conf 7777799997352425899599999999998---4389999899999999758999999987479-----85-999----
Q ss_pred HCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 001356777778888763013633467887654304762-1357877753489999997457412234499889999999
Q 537021.9.peg.4 226 LMLALADRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVN-PSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQ 304 (369)
Q Consensus 226 ~llg~~~~~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d-~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~ 304 (369)
...+..++..+...|...+..+.+.+...+.+ ...+++.+..|++++........ ....+.++|...+.+
T Consensus 246 -------~~~~~~ll~~~~~~d~~~~~~lad~~a~~~~~~~~~~l~l~~~~l~~~~r~~~~~~--~~~~~~~~E~~~~~r 316 (363)
T PRK07471 246 -------YQRTTALLDTLPRLDRRALHALADAAAGGDRAAFALFLDLLDRWLARLARAGARNA--GLPEAVPGEAALLAR 316 (363)
T ss_pred -------HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCHHHHHHHH
T ss_conf -------99999999747678999999999998168779999999999999999998752278--810017317999986
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHH
Q ss_conf 98629989999999999999998302-788899999999999533
Q 537021.9.peg.4 305 YSKEVSITFLSRFWQMILKGISEIEG-FSRPMEAVEMVLIRLAHA 348 (369)
Q Consensus 305 ~a~~i~~~~L~~~lq~l~~a~~~Lk~-n~np~L~lE~lLlkL~~~ 348 (369)
++...+...+...|+.+.+...+.+. |.||+.++=-++.+|...
T Consensus 317 l~~~~~~~~~~~~~~~l~~~~~~~~~~NLD~k~~~ld~~~~l~~~ 361 (363)
T PRK07471 317 LAPDARLRRWAEVWEKIGRRARRTEAVNLDRKALVLDVFGLLAEA 361 (363)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 088630899999999999999999861898899999999999997
No 29
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=0 Score=463.59 Aligned_cols=306 Identities=21% Similarity=0.258 Sum_probs=251.2
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 48999999999982876706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4 4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA 83 (369)
Q Consensus 4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~ 83 (369)
|+..++.|.. ..+|+||||||+||.|+||.++|+.||++|+|+++..+. +|||.|++|+++..|+|||++.+.+.
T Consensus 6 ~~~~w~~l~~--~~~rl~HA~Lf~Gp~G~Gk~~lA~~~A~~llC~~~~~~~---~~Cg~C~sC~~~~~~~HPD~~~i~Pe 80 (342)
T PRK06964 6 QTDDWNRLQA--LRARWPHALLLHGQAGIGKLAFAQHLAQGLLCETPQPNG---EPCGTCAACTWFAQGNHPDYRIVRPE 80 (342)
T ss_pred CHHHHHHHHH--CCCCHHEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC---CCCCCCHHHHHHHCCCCCCEEEECCC
T ss_conf 5699999998--068713057657999867999999999998389999888---97867777888862799974553400
Q ss_pred -----------------------------CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC
Q ss_conf -----------------------------223345556655544565420465237751156648001678999997212
Q 537021.9.peg.4 84 -----------------------------SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP 134 (369)
Q Consensus 84 -----------------------------s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp 134 (369)
..|+|||||++.++++++|++|+|||+||++||+||.+|||||||||||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~idqiR~l~~~l~~~~~~g~~kVviI~~Ae~mn~~aaNalLK~LEEPp 160 (342)
T PRK06964 81 ALAAEAPGAADDAKAADADEGGKKTRAPSKEIKIEQVRALLDFCGVGSHRGGARVVVLYPAEALNVAAANALLKTLEEPP 160 (342)
T ss_pred HHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCC
T ss_conf 21022333210010111222101235655645499999999997007545884499982778738999999999723798
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCH
Q ss_conf 21114665067543303567543332102454001356787643101345625664456531676420011000111000
Q 537021.9.peg.4 135 PHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIAR 214 (369)
Q Consensus 135 ~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~ 214 (369)
++|+|||+|+++++|||||+||||+++|++++.+++..+|.. +++. ++.. +...++|++..|+.+.+.
T Consensus 161 ~~~~~iL~~~~~~~llpTI~SRcq~~~~~~~~~~~~~~~L~~----~~v~---~a~~-lla~a~G~p~~Al~l~~~---- 228 (342)
T PRK06964 161 PGVVFLLVSARIDRLLPTILSRCRQWPMTVPAPEAAAAWLAA----QGVA---DANA-LLAEAGGAPLAALALASD---- 228 (342)
T ss_pred CCEEEEEEECCHHHCCHHHHHCCEEECCCCCCHHHHHHHHHH----CCCC---CHHH-HHHHCCCCHHHHHHHHCC----
T ss_conf 784899986992548368876764302899599999999987----3986---3999-998809998999987167----
Q ss_pred HHCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 00012103220001356777778888763013633467887654304762135787775348999999745741223449
Q 537021.9.peg.4 215 CNDKIVTSSVRLMLALADRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLY 294 (369)
Q Consensus 215 ~~~~i~~e~v~~llg~~~~~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~ 294 (369)
+. .+....+++.+..+.....+...+.+.+ .+...+++.+..|+||++.++..+. ..+
T Consensus 229 -~~---------------~~~~~~~l~~L~~~~~~~~~~~ae~~~k--~~~~~~l~~l~~w~~DlL~~~~~~~----~~~ 286 (342)
T PRK06964 229 -EN---------------RPLRDWTLGQLAAGAACDAFACGETLQK--LPVPAVLGWLQRWLYDLLAQRLAGA----PRY 286 (342)
T ss_pred -CH---------------HHHHHHHHHHHHCCCCCCHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHCCC----CCC
T ss_conf -35---------------9999999999864332579999999844--7899999999999999999982598----112
Q ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 988999999998629989999999999999998302788899999999999533
Q 537021.9.peg.4 295 SEAENARALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHA 348 (369)
Q Consensus 295 ~~~e~~~i~~~a~~i~~~~L~~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~~~ 348 (369)
.+++...+.+++++++...+.++++.+.+++..+..|+|++|+||.++++.-.+
T Consensus 287 ~~~~~~~l~~lA~~~~~~~L~~~~~~l~~~r~~l~~nvN~~L~lE~LlL~~~e~ 340 (342)
T PRK06964 287 FPAQRAALARCAAAADANAFARFAKAVTRQRAVENHPLAARLVFEELFLGYREL 340 (342)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 677999999988508999999999999999998629987799999999999997
No 30
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=0 Score=454.13 Aligned_cols=311 Identities=22% Similarity=0.303 Sum_probs=238.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCHHHHHHHCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866--5878999779999779877822
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPT--VEFEGFGEHCQAIIRGNHVDVV 78 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~--~~~c~~c~~c~~i~~~~~~d~~ 78 (369)
||||+++++.|.+++++||+||||||+||+|+||+|+|+.||+.|+|.......|+ .+||+.|+.|+++..|+|||++
T Consensus 25 liGq~~~~~~L~~a~~~gRl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~~~r~i~~g~hpdl~ 104 (352)
T PRK09112 25 LFGHEEARAFLAQAYREGRLHHALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASPLWRQIAQGAHPNLL 104 (352)
T ss_pred HCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEE
T ss_conf 27869999999999984996524653589980899999999999866998666865567888787789999748999956
Q ss_pred CCC---------CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 245---------33223345556655544565420465237751156648001678999997212211146650675433
Q 537021.9.peg.4 79 ELD---------AASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKI 149 (369)
Q Consensus 79 e~~---------~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~l 149 (369)
+++ ..++|+||+||++.++++++|++|+|||+|||+||+||.+|||||||+|||||++|+|||+|++|++|
T Consensus 105 ~i~r~~d~k~~~~~~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m~~~aaNALLK~LEEPp~~~~fiLit~~~~~l 184 (352)
T PRK09112 105 HLTRPFDEKTGKFKTAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRL 184 (352)
T ss_pred EEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHC
T ss_conf 55343220214543357779999999984548866880699981878746999999999853489874899886997777
Q ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCC
Q ss_conf 03567543332102454001356787643101345625664456531676420011000111000000121032200013
Q 537021.9.peg.4 150 PITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLA 229 (369)
Q Consensus 150 l~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg 229 (369)
||||+||||+|+|+|+++++|.+.|.++..+|++. +++++..++..|+||+|+|++++++ ++-++ +..+..++
T Consensus 185 l~TI~SRCq~~~f~pL~~~di~~~L~~i~~~~~~~-~~~~~~~l~~~a~GS~~~Al~L~~~----~gl~i-~~~~~~ll- 257 (352)
T PRK09112 185 LPTIRSRCQPISLKPLDDDELKKALSHLGSKQGIS-AGEETEALLQRSEGSVRKALLLLNY----GGLEI-IDTVDQLL- 257 (352)
T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCHHHHHHHHCC----CHHHH-HHHHHHHH-
T ss_conf 68999743321488939899999999875126899-8799999998708998899987448----77999-99999998-
Q ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 56777778888763013633467887654304762--1357877753489999997457412234499889999999986
Q 537021.9.peg.4 230 LADRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVN--PSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSK 307 (369)
Q Consensus 230 ~~~~~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d--~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~ 307 (369)
.. -.-|...+....+.+...+.+ +..+++.+..++......... .++ .
T Consensus 258 -----------~~-p~~d~~~~~~la~~~~~~~~~~~~~~~~~~l~~~l~~~ar~~a~--~~~-----~----------- 307 (352)
T PRK09112 258 -----------AG-SGFDLPKAHALAGALSGRESEVQFDLFRDHLLDRIANEARRAAE--SGQ-----L----------- 307 (352)
T ss_pred -----------HC-CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH--CCC-----H-----------
T ss_conf -----------08-99998999999999847774789999999999999999998501--588-----3-----------
Q ss_pred HCCHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHC
Q ss_conf 2998999999999999999830-27888999999999995330
Q 537021.9.peg.4 308 EVSITFLSRFWQMILKGISEIE-GFSRPMEAVEMVLIRLAHAV 349 (369)
Q Consensus 308 ~i~~~~L~~~lq~l~~a~~~Lk-~n~np~L~lE~lLlkL~~~~ 349 (369)
-....+.+.|+.+.+...+-+ .|-+|+.++--++.+|-...
T Consensus 308 -~~a~~~a~~~~~~~~~~~~~~a~NLD~~~~il~~~~~i~~a~ 349 (352)
T PRK09112 308 -ALAERWARFWSELHEEIVEAETYNLDRKQTVISLLERIHRAF 349 (352)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf -789999999999999999889877787999999999999986
No 31
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=0 Score=446.17 Aligned_cols=307 Identities=22% Similarity=0.293 Sum_probs=251.4
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 48999999999982876706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4 4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA 83 (369)
Q Consensus 4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~ 83 (369)
|+..++.|.. ...|+||||||+||.|+||+++|+.||++|+|+++..+. .|||.|.+|+++..|+|||++++.+.
T Consensus 6 ~~~~w~~l~~--~~~rl~HA~L~~Gp~G~Gk~~~A~~~A~~llC~~~~~~~---~~Cg~C~sC~~~~~g~HPD~~~i~p~ 80 (325)
T PRK08699 6 HQEQWRQIAE--HWERRPNAWLFVGKKGTGKTAFARFAAKALLCETPAPGC---KPCGECMSCHLFGQGSHPDFYEITPL 80 (325)
T ss_pred CHHHHHHHHH--HCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC---CCCCCCHHHHHHHCCCCCCEEEEECC
T ss_conf 5799999998--344501179757999978999999999998289998889---98988888999865999996885134
Q ss_pred ------C----CCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHH
Q ss_conf ------2----233455566555445654204652377511566480016789999972122111466506754330356
Q 537021.9.peg.4 84 ------S----HTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITV 153 (369)
Q Consensus 84 ------s----~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI 153 (369)
+ .|+||+||+++++++++|++|+|||+||++||+||.+|+|||||||||||++|+|||+|+++++|+|||
T Consensus 81 ~~~~~~g~~~~~I~idqiR~l~~~~~~~~~~~~~kV~ii~~ae~mn~~aaNaLLK~LEEPp~~~~fiL~t~~~~~llpTI 160 (325)
T PRK08699 81 ADEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNVQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTI 160 (325)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCCCHH
T ss_conf 45300166556676999999999971086568946999857777589999999998417888848999879846462339
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCH
Q ss_conf 75433321024540013567876431013456256644565316764200110001110000001210322000135677
Q 537021.9.peg.4 154 LSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADR 233 (369)
Q Consensus 154 ~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~ 233 (369)
+||||+++|++++.+++..||.. .|+. +.++ .++ .++|++- + . ..+.+ .
T Consensus 161 ~SRc~~~~~~~p~~~~~~~~L~~----~gv~-~~~~--~La-~~~gapl-----~----~-~~~~~-------------~ 209 (325)
T PRK08699 161 KSRCRKMVLPAPSHEEALAYLRE----RGVA-EPEE--RLA-FHSGAPL-----F----D-EEDEL-------------R 209 (325)
T ss_pred HHCCCCCCCCCCCHHHHHHHHHH----CCCC-CHHH--HHH-HCCCCCH-----H----H-HCCHH-------------H
T ss_conf 86454210899599999999997----4897-6789--997-6599811-----2----3-17436-------------9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHH
Q ss_conf 77788887630136334678876543047621357877753489999997457412234499889999999986299899
Q 537021.9.peg.4 234 NRIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITF 313 (369)
Q Consensus 234 ~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~ 313 (369)
+...++++.+..+....++.....+.+.......+++.+..|++|++..+... ...+.++..+.+..++.+++...
T Consensus 210 ~~r~~ll~~L~~~~~~~~l~~a~~~~k~~~~l~~~l~wlq~wl~DL~~~~~~~----~~~y~~d~~~~L~~lA~~~~~~~ 285 (325)
T PRK08699 210 ALRAKLLDILAEPRLLKILDYAALFDKEKLPLAVFVGWMQKWLVDLGLCLQHM----KPVYYPAYEDRLLQTASGFRPRN 285 (325)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHHHHHCCHHH
T ss_conf 99999999972644055999999987565848999999999999999998269----85438768999999987089999
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999830278889999999999953304
Q 537021.9.peg.4 314 LSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQ 350 (369)
Q Consensus 314 L~~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~ 350 (369)
+..+++.+.++.+.++.|.|++|++|.+++....+..
T Consensus 286 L~~~~~~l~~~~r~~~~nlN~~L~lE~LLl~y~~l~~ 322 (325)
T PRK08699 286 VFAAEDMLKQLAPYGFHTLNVKMQIEHLLINYLELKK 322 (325)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999998545998789999999999998875
No 32
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=100.00 E-value=0 Score=442.32 Aligned_cols=315 Identities=17% Similarity=0.285 Sum_probs=262.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHC--CCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977--9877822
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIR--GNHVDVV 78 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~--~~~~d~~ 78 (369)
||||+++++.|++++++|++|| |||+||||+||||+|++||++|+|+....+......|..|..|+.... ..+.++.
T Consensus 17 vvGq~~i~~~L~~~~~~~~~ph-lLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~~~~~~i~~~~~~~~~~ 95 (337)
T PRK12402 17 ILGQESVVDHLSALAASGNLPH-LVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFDQGKKYLVEDPRFAHFY 95 (337)
T ss_pred HCCCHHHHHHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEEECCCCHHHHH
T ss_conf 0397999999999997799876-988892984899999999999679975678333116531135640010166423442
Q ss_pred CCCCCC-CCCHHHHHHHHH-HHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 245332-233455566555-445654204652377511566480016789999972122111466506754330356754
Q 537021.9.peg.4 79 ELDAAS-HTSIDDVREIID-QIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSR 156 (369)
Q Consensus 79 e~~~~s-~~~id~ir~l~~-~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SR 156 (369)
...... ..++|.+|+++. .++++|..|+||||||||||+||.+|||||||+|||||++++|||+|+++++++|||+||
T Consensus 96 ~~~~~~~~~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~Aq~aLlk~lEe~~~~~~fIl~t~~~~~ii~tI~SR 175 (337)
T PRK12402 96 DDPKRKYKSVIDNFKHILKEYASMRPLSADYKLILFDNAEALREDAQQALRRIMERYSETCRFIFSTTQPSKLIPPIRSR 175 (337)
T ss_pred CCHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHH
T ss_conf 01533277378999999999861488778804999707131799999999988740887669987238644475247762
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHH
Q ss_conf 33321024540013567876431013456256644565316764200110001110000001210322000135677777
Q 537021.9.peg.4 157 CQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRI 236 (369)
Q Consensus 157 cq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i 236 (369)
||.|+|++++.++|..+|++|+++||+++++++++.||+.|+||||+|+++|+++....+..++.+.+..+.|....+.+
T Consensus 176 C~~i~F~~~s~~~i~~~L~~I~~~E~i~~~~~~l~~ia~~s~GdlR~ain~Lq~~~~~~~~~~~~~~~~~~~~~~~~~~i 255 (337)
T PRK12402 176 CLPLFFRPVPDDEIRSVLESIAAAEGVEISDDGLDLIAYYAEGDLRKAILTLQLAAEAEGEVTTEAALEELSDTGTDETV 255 (337)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHH
T ss_conf 44543589899999999999999849998999999999986998999999999998727997718899998778979999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHH
Q ss_conf 88887630136334678876543-04762135787775348999999745741223449988999999998629989999
Q 537021.9.peg.4 237 MDLFGYLIKGDIINVLQEFSSQY-DSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLS 315 (369)
Q Consensus 237 ~~Ll~ai~~~d~~~al~~l~~l~-~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~ 315 (369)
.++++++..+|..++...++++. +.|.++..++..|...+++ ..+...+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~il~~l~~~~~~-----------------------------~~~~~~~~ 306 (337)
T PRK12402 256 EEALDAAEAGDFTDARSLLDDLLIDEGLSGREVLRELLEVARR-----------------------------GYSEYNVA 306 (337)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-----------------------------HCCHHHHH
T ss_conf 9999999848999999999998875599999999999999987-----------------------------47868999
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 999999999998302788899999999999
Q 537021.9.peg.4 316 RFWQMILKGISEIEGFSRPMEAVEMVLIRL 345 (369)
Q Consensus 316 ~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL 345 (369)
+++..+.+.+.++..++++.+.+|.++.+|
T Consensus 307 ~i~~~~a~~e~rl~~g~~~~lqL~a~la~i 336 (337)
T PRK12402 307 ELATLAADADARLTDAANERIQLNALLAEL 336 (337)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 999999999988751799999999999847
No 33
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=0 Score=429.03 Aligned_cols=284 Identities=21% Similarity=0.297 Sum_probs=216.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
||||+.+++.|++++++||+||||||+||+|+||+++|+.||+.|+|++ +|+.|..|+ +..++|||++++
T Consensus 6 iiGq~~~~~~L~~ai~~~rl~hAyLF~Gp~G~GK~~~A~~fa~~Ll~~~---------~~~~~~~~r-i~~~nHPDl~~i 75 (314)
T PRK07399 6 LIGQPLAIELLTAAIEQNRIAPAYLFAGPEGVGRKLAALRFIEGLLSQG---------SPSKNIRRR-LEEGNHPDLLWV 75 (314)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC---------CCCCCHHHH-HHCCCCCCEEEE
T ss_conf 2594999999999998599674487789998329999999999985789---------999766558-751899977886
Q ss_pred CCC-----------------------CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCC
Q ss_conf 533-----------------------223345556655544565420465237751156648001678999997212211
Q 537021.9.peg.4 81 DAA-----------------------SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHV 137 (369)
Q Consensus 81 ~~~-----------------------s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~ 137 (369)
.+. ..++|||||++.++++++|++|+|||+|||+||+||.+|+||||||||||| ++
T Consensus 76 ~P~~~~~g~~~~~~~~~~~~~~~~~~~~I~idqIR~l~~~l~~~p~~~~~kVvII~~ae~m~~~AaNaLLKtLEEP~-~~ 154 (314)
T PRK07399 76 EPTYQHQGKLITASEAEEAGLKRKSPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NG 154 (314)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCCC-CC
T ss_conf 05620034545577898765302687778799999999997318856884799988978719999999998614787-85
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHC
Q ss_conf 14665067543303567543332102454001356787643101345625664456531676420011000111000000
Q 537021.9.peg.4 138 KFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCND 217 (369)
Q Consensus 138 ~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~ 217 (369)
+|||+|+++++|||||+||||+++|+|++.++|.++|+++...+...++.+ .+...|+||++.|+...++.-.
T Consensus 155 ~fILit~~~~~lLpTI~SRCQ~i~F~~l~~~~i~~~L~~~~~~~~~~~~~~---~l~~~A~GspG~a~~~~~~~~~---- 227 (314)
T PRK07399 155 TLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDNINEILDHP---ELLALAQGSPGAAIANIEQLQS---- 227 (314)
T ss_pred EEEEEECCHHHCCHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCHH---HHHHHHCCCHHHHHHHHHHHHH----
T ss_conf 699997993649146641875633899899999999997166433102789---9998817997999999999874----
Q ss_pred CCCHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 1210322000135677777888876301363346788765430476213578777-534899999974574122344998
Q 537021.9.peg.4 218 KIVTSSVRLMLALADRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDL-AEFTHLVTRIKYIPEMADTLLYSE 296 (369)
Q Consensus 218 ~i~~e~v~~llg~~~~~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~L-l~~~rdll~~k~~~~~~~~~~~~~ 296 (369)
+. +.+.+.++.. -.+..++++...++.+. |+.. .-|+.|.+..
T Consensus 228 -i~-------------~el~~~l~~~-~~~~~~~l~lak~i~~~-------Ld~~~qlwl~~~lq~-------------- 271 (314)
T PRK07399 228 -IP-------------PELLQKLEQP-PKNPLEALELAKDISEE-------LDIEQQLWLIDYLQQ-------------- 271 (314)
T ss_pred -CC-------------HHHHHHHHCC-CCCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH--------------
T ss_conf -86-------------9999998624-56899999998861266-------788999999999999--------------
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 8999999998629989999999999999998302788899999999999533
Q 537021.9.peg.4 297 AENARALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHA 348 (369)
Q Consensus 297 ~e~~~i~~~a~~i~~~~L~~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~~~ 348 (369)
.+.... ....+++.+.+++.+|+.++||||++|++|++|+..
T Consensus 272 ----~~w~~~------~~~~~~~~le~~r~~L~~~vqprL~~Ev~ll~l~~~ 313 (314)
T PRK07399 272 ----HYWQKT------KNSQLLKKLEKLRKQLLSYVQPRLAWEVTLLELSQE 313 (314)
T ss_pred ----HHHHHC------CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
T ss_conf ----999860------037999999999999985288089999999999734
No 34
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=0 Score=424.17 Aligned_cols=281 Identities=19% Similarity=0.264 Sum_probs=217.7
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 48999999999982876706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4 4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA 83 (369)
Q Consensus 4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~ 83 (369)
|+.+++.|++++++||+||||||+| |+||.++|++||++|+|+++... .|||.|.+|+++..|+|||++++++.
T Consensus 7 Qp~i~~~l~~~i~~~rl~HAyLf~G--~~Gk~~~A~~~A~~l~C~~~~~~----~pCg~C~~C~~i~~~~hpDv~~i~~~ 80 (290)
T PRK07276 7 QPKLFQRFQTILEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEDV----LPCGHCRSCRLIEQGDFSDVTVIEPQ 80 (290)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCC--CCCHHHHHHHHHHHHHCCCCCCC----CCCCCCHHHHHHHCCCCCCCEEECCC
T ss_conf 8999999999998499650542169--86879999999999818999998----98988999999876999871377167
Q ss_pred CC-CCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 22-33455566555445654204652377511566480016789999972122111466506754330356754333210
Q 537021.9.peg.4 84 SH-TSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDL 162 (369)
Q Consensus 84 s~-~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f 162 (369)
++ ++||+||++.++++.+|++|+|||||||+||+||.+|||||||+|||||++|+|||+|++++++||||+||||+++|
T Consensus 81 ~~~I~vd~IR~l~~~~~~~~~~g~~KV~II~~Ad~mt~~AaNaLLK~LEEPp~~t~~iLlt~~~~~lLpTI~SRCQ~i~f 160 (290)
T PRK07276 81 GQVIKTDTIRELTANFSQSGYEGKRQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHF 160 (290)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHCCHHHHHHHHHHHCCCCCCCEEEEEECCHHHCCHHHHHCCCCCCC
T ss_conf 77576889999999984456137827999776565299999999997038988837998879925493788736601028
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 24540013567876431013456256644565316764200110001110000001210322000135677777888876
Q 537021.9.peg.4 163 HRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLFGY 242 (369)
Q Consensus 163 ~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll~a 242 (369)
+ ...+.+... +.++|+ .+.-..++|.+++ |+..|+.+.+ ++...+ + ++.+..+++.
T Consensus 161 p-~~~~~l~~~----l~~~gi--~~~~a~~la~~~~-~~~~a~~l~~-------~~~f~~----~-----~~~~~~~~~~ 216 (290)
T PRK07276 161 P-KNEAYLYQL----LEEKGL--LKTQAKLLAKLAQ-STSEAEKLAQ-------NSKFLE----L-----IDQAERFVSI 216 (290)
T ss_pred C-CCHHHHHHH----HHHCCC--CHHHHHHHHHHHC-CHHHHHHHHH-------CHHHHH----H-----HHHHHHHHHH
T ss_conf 9-967999999----998699--8679999999965-9999999872-------548999----9-----9999999999
Q ss_pred HHCCCHHHHHHHHH--HHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 30136334678876--5430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4 243 LIKGDIINVLQEFS--SQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM 320 (369)
Q Consensus 243 i~~~d~~~al~~l~--~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~ 320 (369)
+..++....+...+ .+++...+-..+++.+. .-+++.++.......++.
T Consensus 217 l~~~~~~~~l~v~~~~~l~~~k~~q~~~l~ll~-----------------------------l~~~~~~~~~~~~~~L~~ 267 (290)
T PRK07276 217 LLKDQDQAYLQVARLVQLADDKEEQDQVFTLLT-----------------------------LLLAKERAQVTPRTQLEA 267 (290)
T ss_pred HHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHH
T ss_conf 980882779999999986322889999999999-----------------------------999987607899999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999983027888999999999
Q 537021.9.peg.4 321 ILKGISEIEGFSRPMEAVEMVLI 343 (369)
Q Consensus 321 l~~a~~~Lk~n~np~L~lE~lLl 343 (369)
+.+++..++.|+|+++++|.++|
T Consensus 268 il~ak~~l~aNVnfq~~lE~L~L 290 (290)
T PRK07276 268 VYQARKMWQSNVSFQNALEYMVL 290 (290)
T ss_pred HHHHHHHHHHCCCHHHHHHHHCC
T ss_conf 99999999815799999999719
No 35
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=0 Score=416.54 Aligned_cols=302 Identities=17% Similarity=0.252 Sum_probs=241.7
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 48999999999982876706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4 4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA 83 (369)
Q Consensus 4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~ 83 (369)
++.+.+.|.+++.+||+||||||+||+|+||+++|+.||+.|+|.+... +|||.|.+|+.+..|+|||++++++.
T Consensus 8 l~~~~~~l~~~~~~~rl~HA~L~~g~~G~Gk~~la~~la~~LlC~~~~~-----~~Cg~C~sC~l~~~g~HPD~~~i~pe 82 (319)
T PRK06090 8 LVPVWQNWKSGLDAERIPGALLLQSDEGLGVESLVELFSHALLCQNYQS-----EACGFCHSCELMKSGNHPDLHVIKPE 82 (319)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCC-----CCCCCCHHHHHHHCCCCCCCEEEECC
T ss_conf 3799999999998699630676679998579999999999980899999-----98877877999875899982366123
Q ss_pred ---CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf ---22334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4 84 ---SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF 160 (369)
Q Consensus 84 ---s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~ 160 (369)
..++||+||++.++++.+|..|+|||+||++||+||.+|+|||||||||||++|+|||+|+++++|+|||+||||++
T Consensus 83 ~~~k~I~vd~IR~l~~~~~~~~~~g~~KV~iI~~ae~m~~~AaNALLKtLEEPp~~t~fiL~t~~~~~ll~TI~SRCq~~ 162 (319)
T PRK06090 83 KEGKSITVEQIRQCNRLAQESSQLGGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQW 162 (319)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCCCCHHHCCCCC
T ss_conf 35676879999999999754521069369998144434999999999984289988389987685120864187614450
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf 10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4 161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240 (369)
Q Consensus 161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll 240 (369)
+|++++.+++.+||.+ +++...+ ...+.++|++-.|+.++++- .. +. +..+.+-+
T Consensus 163 ~l~~p~~~~~~~WL~~----q~~~~~~----~aL~l~~g~Pl~a~~~l~~~------~~--~~---------~~~l~~~l 217 (319)
T PRK06090 163 VVTPPSTDQAMQWLKG----QGISVPA----YALKLNMGSPLKTLAMMKEG------EL--EE---------YHKLERQL 217 (319)
T ss_pred CCCCCCHHHHHHHHHH----HCCCCHH----HHHHHCCCCCHHHHHHHCCC------HH--HH---------HHHHHHHH
T ss_conf 2899599999999988----4875579----99988499949999986386------89--99---------99999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 76301363346788765430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM 320 (369)
Q Consensus 241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~ 320 (369)
...+.++....+.....+ + .++...+..+..++.|....+..- ..+..........+++...|...++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~-~--~~~~~~L~Wl~~lL~Da~K~~~gi--------~~~~~~~~~~~l~~l~~~~L~~~~~~ 286 (319)
T PRK06090 218 VDALSGPVSDVLKCASLI-A--ADPLTALSWLWLLLTDAQKAHFGV--------QNEYILPGSAALGPFTYSGLYASTAK 286 (319)
T ss_pred HHHHHCCCCHHHHHHHHH-C--CCHHHHHHHHHHHHHHHHHHHHCC--------CCCHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 999847884199998873-6--057778999999999999998605--------21066667999984189999999999
Q ss_pred HHHHHHHHHC--CCCHHHHHHHHHHHHH
Q ss_conf 9999998302--7888999999999995
Q 537021.9.peg.4 321 ILKGISEIEG--FSRPMEAVEMVLIRLA 346 (369)
Q Consensus 321 l~~a~~~Lk~--n~np~L~lE~lLlkL~ 346 (369)
+.+++.+|.. ++|..|.++..|++..
T Consensus 287 l~~~r~qL~~~~~lN~ELll~~~Ll~~~ 314 (319)
T PRK06090 287 LLELKEQLQQFSGLNTELLIMNWLIESR 314 (319)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 9999999971887269999999999987
No 36
>TIGR00678 holB DNA polymerase III, delta' subunit; InterPro: IPR004622 DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multi-chain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerisation to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This domain is the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tightly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classified as delta'. The noise cut-off is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication.
Probab=100.00 E-value=0 Score=437.68 Aligned_cols=188 Identities=31% Similarity=0.509 Sum_probs=171.5
Q ss_pred HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC--CCC-
Q ss_conf 99999998287670620107879888899999999961468777886658789997799997798778222453--322-
Q 537021.9.peg.4 9 KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDA--ASH- 85 (369)
Q Consensus 9 ~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~--~s~- 85 (369)
+.|.+++++||+||||||+||+|+||.++|+.||+.|+|+..... +|||.|.+|++|.+|+||||++|.+ .+.
T Consensus 2 ~~l~~~~~~~r~~HA~LF~G~~G~Gk~~~A~~~A~~l~C~~~~~~----~~Cg~C~~C~~~~~G~HPD~~~~~P~~~~~~ 77 (216)
T TIGR00678 2 QQLQRALEKGRLAHAYLFTGPEGVGKELLALALAKALLCEPRGGG----EPCGECHSCRLIEAGNHPDLHRLEPEGQSKS 77 (216)
T ss_pred HHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHHCCCCCEEEEEEECCCCC
T ss_conf 567889860678861254448887489999999999807785778----8888588899987079982378742347777
Q ss_pred ---------------------CCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf ---------------------33455566555445654204652377511566480016789999972122111466506
Q 537021.9.peg.4 86 ---------------------TSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATT 144 (369)
Q Consensus 86 ---------------------~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~ 144 (369)
|||||||++.++++++|++|+|||||||+||+||.+|||||||||||||++|+|||+|+
T Consensus 78 ~~~de~~~~~~g~a~~~~~~~Ik~dq~R~l~~~~~~~~~~~~~rVviI~~Ae~mn~~AANALLKtLEEPp~~t~fiL~~~ 157 (216)
T TIGR00678 78 LTADEAAEGEEGSAKRRALPQIKVDQVRELVEFLSLTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITH 157 (216)
T ss_pred CCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHEECCCCCEEEEEECC
T ss_conf 77645897625642113678787278999999986064214751799767323258989865101012798707988508
Q ss_pred CC--CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHCCCCCCCHH
Q ss_conf 75--43303567543332102454001356787643101345625-66445653167642001
Q 537021.9.peg.4 145 EI--RKIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDP-EAVAMIARASDGSARDG 204 (369)
Q Consensus 145 ~~--~~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~-~~l~~ia~~s~GslR~A 204 (369)
++ ++|||||+||||+++|.+++.+++.+||.+ .|+.-+. +....++++++|+++.|
T Consensus 158 ~~DP~~lLpTI~SRCq~~~f~~l~~~~~~~~L~~----~g~~~~~~~~a~~~~~~~~G~p~~a 216 (216)
T TIGR00678 158 SPDPERLLPTIRSRCQVLPFPPLSEEALLQWLIE----QGISENVPEAAELLLALAGGSPGRA 216 (216)
T ss_pred CCCHHHHCCCCCCCEEEEEECCCCHHHHHHHHHH----CCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 8884332211103201586259988999999997----0878780689999999846851239
No 37
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=0 Score=420.31 Aligned_cols=298 Identities=19% Similarity=0.261 Sum_probs=233.6
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 48999999999982876706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4 4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA 83 (369)
Q Consensus 4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~ 83 (369)
|+.+.+.|.+++++||+||||||+||+|+||+++|++||+.|+|+.. ++|+.|.+|+.+..|+|||++.++..
T Consensus 9 q~~~~~~L~~~i~~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~llc~~~-------~~~~~~~~~~~i~~g~HPD~~~i~~~ 81 (319)
T PRK08769 9 QQRAFDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGP-------DPALAQRTRQLIAAGTHPDLQLVSFI 81 (319)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC-------CCCCCCHHHHHHHCCCCCCEEEEECC
T ss_conf 68999999999976994206875899987899999999999837997-------97654338899966899896877534
Q ss_pred ---------CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH
Q ss_conf ---------22334555665554456542046523775115664800167899999721221114665067543303567
Q 537021.9.peg.4 84 ---------SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVL 154 (369)
Q Consensus 84 ---------s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~ 154 (369)
+.|+|||||+++++++++|++|+|||+|||+||+||.+|+|||||||||||++|+|||+|+++++|||||+
T Consensus 82 ~~~~~~k~k~~I~IdqiR~l~~~~~~~p~~g~~KV~IId~Ad~mn~~AaNalLK~LEEPp~~~~~iL~~~~~~~ll~TI~ 161 (319)
T PRK08769 82 PNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRSACNALLKTLEEPSPGRYLWLISAQPARLPATIR 161 (319)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCCHHHH
T ss_conf 44454311234869999999999613720279569998066752899999999982279988489998699365824776
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHH
Q ss_conf 54333210245400135678764310134562566445653167642001100011100000012103220001356777
Q 537021.9.peg.4 155 SRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRN 234 (369)
Q Consensus 155 SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~ 234 (369)
||||+++|++++.+++..||.. +| +++......+..|+|.++.|+.++. ++.+. -+.
T Consensus 162 SRCq~~~~~~p~~~~~~~~L~~----~g--~~~~~a~~~l~~a~g~p~~A~~~~~------~~~~~-----------~~~ 218 (319)
T PRK08769 162 SRCQRLEFKLPPAHEALAWLLS----QG--VSERAAQEALDAARGHPGLAAQWLR------EDGLA-----------VRR 218 (319)
T ss_pred HCCEEECCCCCCHHHHHHHHHH----CC--CCHHHHHHHHHHHCCCHHHHHHHHC------CCCHH-----------HHH
T ss_conf 4850111899699999999997----59--9918999999982799689999843------67277-----------899
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHH
Q ss_conf 77888876301363346788765430476213578777534899999974574122344998899999999862998999
Q 537021.9.peg.4 235 RIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFL 314 (369)
Q Consensus 235 ~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L 314 (369)
.+..-+..+.++. ..++.+++.+...+... ..+.+..++...+. ...+....+...+
T Consensus 219 ~~~~~l~~i~~~~-~~~l~~aq~w~~d~~~~-----~~l~~~~~l~~~~~-----------------~~~~~~~~~l~~L 275 (319)
T PRK08769 219 AVAQDLEQIASGR-AGAVDVAQRWTNDGQAD-----QRLRHAADLALAQA-----------------SAGLTDPSRLHKL 275 (319)
T ss_pred HHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH-----------------HHCCCCHHHHHHH
T ss_conf 9999999885074-25999999987602457-----88886440444211-----------------1116882889999
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 9999999999998302788899999999999533049998
Q 537021.9.peg.4 315 SRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSP 354 (369)
Q Consensus 315 ~~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~~~s~ 354 (369)
.++++.+.+++..++.|+|+++++|.+|+........|.+
T Consensus 276 ~~~l~~~~~~r~l~~~nvn~~L~le~Lli~~re~~~~~~~ 315 (319)
T PRK08769 276 ATWFDAANRTRDLLRTTVRADLAVTELLLAWREGERQPRS 315 (319)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999999998538872889999999999974427777
No 38
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=100.00 E-value=0 Score=410.76 Aligned_cols=296 Identities=23% Similarity=0.346 Sum_probs=261.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
++||+++++.|++++++|++|| |||+||||+||||+|++||+.++|++.. -+++|+
T Consensus 18 i~g~~~~~~~L~~~i~~~~~ph-lLf~GppG~GKTt~a~~la~~l~~~~~~-----------------------~~~lel 73 (318)
T PRK00440 18 VVGQEEIVERLKSFVKEKNMPH-LLFAGPPGTGKTTAALALARELYGEYWR-----------------------ENFLEL 73 (318)
T ss_pred HCCCHHHHHHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCCC-----------------------CCEEEE
T ss_conf 4196999999999998799866-9888959988999999999997698643-----------------------476895
Q ss_pred CCCCCCCHHHHHHHHH-HHHHHHHC-CCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 5332233455566555-44565420-465237751156648001678999997212211146650675433035675433
Q 537021.9.peg.4 81 DAASHTSIDDVREIID-QIYYKPIS-ARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQ 158 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~-~~~~~p~~-~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq 158 (369)
++++..++|.||+.+. .++.+|.. ++|||+||||||.||.+|||||+|+||+||.++.|||+|++++++++||+|||+
T Consensus 74 nasd~r~id~vr~~i~~~~~~~~~~~~~~kiiiiDE~d~l~~~aq~aL~~~mE~~~~~~~fil~~n~~~kii~~i~SRc~ 153 (318)
T PRK00440 74 NASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQTTRFILSCNYSSKIIDPIQSRCA 153 (318)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHE
T ss_conf 16456671789999999997267789973899986855322556788876431056662588634883337615565510
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHH
Q ss_conf 32102454001356787643101345625664456531676420011000111000000121032200013567777788
Q 537021.9.peg.4 159 RFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMD 238 (369)
Q Consensus 159 ~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~ 238 (369)
.++|+|+++++|..+|.+|+++||++++++++..|+..|+||+|+|+++| |..+..++.++.+.+.+++|.++.+.+.+
T Consensus 154 ~i~f~~~~~~~i~~~L~~I~~~E~i~~~~~~l~~i~~~s~gdlR~ain~L-q~~~~~~~~it~~~v~~~~~~~~~~~i~~ 232 (318)
T PRK00440 154 VFRFSPLPKEAVIERLRYIAKNEGLEITDDALEAIYYVSEGDMRKAINAL-QAAAATGKEVTEEAVYKITGTARPEEIRE 232 (318)
T ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHCCCCHHHHHH
T ss_conf 11157899999999999999985999899999999986499899999999-99997489878999999976999899999
Q ss_pred HHHHHHCCCHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 88763013633467887654-30476213578777534899999974574122344998899999999862998999999
Q 537021.9.peg.4 239 LFGYLIKGDIINVLQEFSSQ-YDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRF 317 (369)
Q Consensus 239 Ll~ai~~~d~~~al~~l~~l-~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~ 317 (369)
+++.+..++..++...++++ .+.|..+..++..+.. .+... .++.....++
T Consensus 233 ii~~~~~~~~~~~~~~l~~ll~~~g~~~~dIi~~l~~---~l~~~-------------------------~~~~~~k~~i 284 (318)
T PRK00440 233 MINLALNGDFTEAREKLRELMIDYGLSGEDIIKQIHR---EVLRL-------------------------DIPEDLKVEL 284 (318)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH---HHHHC-------------------------CCCHHHHHHH
T ss_conf 9999970899999999999998659999999999999---99845-------------------------9998999999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
Q ss_conf 99999999983027888999999999995330
Q 537021.9.peg.4 318 WQMILKGISEIEGFSRPMEAVEMVLIRLAHAV 349 (369)
Q Consensus 318 lq~l~~a~~~Lk~n~np~L~lE~lLlkL~~~~ 349 (369)
++.+.+.+.++..++|+++.+|.++.+++.+.
T Consensus 285 i~~ia~~e~rl~~g~~~~lqLe~lla~l~~l~ 316 (318)
T PRK00440 285 IDAIGEADFRITEGANERIQLEALLAKLALLG 316 (318)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999998707999999999999999861
No 39
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=0 Score=398.71 Aligned_cols=275 Identities=19% Similarity=0.279 Sum_probs=216.3
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 48999999999982876706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4 4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA 83 (369)
Q Consensus 4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~ 83 (369)
+...++.|.+++++||+||||||+||+|+||+++|+.||+.|+|++. +.+|..+..+.|||++++.+.
T Consensus 2 ~~~~We~L~~~i~~~Rl~HAyLf~Gp~G~GK~~~A~~~A~~LLc~~~------------p~~~~~i~~~~HPD~~~i~pe 69 (290)
T PRK05917 2 ENAAWEALLQRVRDQKVPSAILLHGQDLSNLSQYAYELASLILLESS------------PEAQYKISQKIHPDIHEFFPE 69 (290)
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCC------------CCHHHHHHHCCCCCEEEECCC
T ss_conf 85499999999983996606876899986599999999999857899------------616889874689985996157
Q ss_pred CC---CCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 22---334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4 84 SH---TSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF 160 (369)
Q Consensus 84 s~---~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~ 160 (369)
++ ++||++|++.++++++|++|+|||+|||+||+||.+|||||||+|||||++|+|||+|+++++|||||+||||++
T Consensus 70 ~k~~~~~Id~iR~l~~~i~~~p~~g~~KV~IId~Ad~Mn~~AaNALLKtLEEPP~~tvfILit~~~~~lLpTI~SRCQ~I 149 (290)
T PRK05917 70 GKGRLHSIETPRAIKKQIWIHPYEANYKIYIIHEADRMTLDAISAFLKVLEDPPKHSVIILTSAKPQRLPPTIRSRSLSI 149 (290)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCCHHHHHCCCEE
T ss_conf 77887867899999999641864688269997567763899999999973479878599998699254823776335116
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf 10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4 161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240 (369)
Q Consensus 161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll 240 (369)
+|++.. ...++++.+..++++++|.+. +.| +...
T Consensus 150 ~i~~~e---------------~~~i~~e~~~~l~~~a~g~~~----~~~--------------~~~~------------- 183 (290)
T PRK05917 150 HIPGEE---------------KTLPSKEDIAYLIRYAQGKES----VTE--------------VGQI------------- 183 (290)
T ss_pred ECCCCC---------------CCCCCHHHHHHHHHHHCCCHH----HHH--------------HHHH-------------
T ss_conf 777620---------------134788999999998469738----889--------------9988-------------
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 76301363346788765430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM 320 (369)
Q Consensus 241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~ 320 (369)
.++..... .++.. .....+|+.++.||||.++++..+.. +.+.+ ++....+. +...-.|...+.+
T Consensus 184 ---~k~~~d~~----~~~~r--~k~~~~l~~ll~~~Rd~~~~~~~~~~-s~l~~-~~~~~~i~----~~~~~~l~~v~~~ 248 (290)
T PRK05917 184 ---VKGSADTD----KQVLR--DKTKRMLEVLLQLFRDRFTLALKVPA-SALAY-PDYLKEIL----TLPVLPLEKVLSI 248 (290)
T ss_pred ---HCCHHHHH----HHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCH-HHHCC-CHHHHHHH----HCCCCCHHHHHHH
T ss_conf ---30127766----78778--99999999999999999998616973-55228-06899998----6635679999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 9999998302788899999999999533049
Q 537021.9.peg.4 321 ILKGISEIEGFSRPMEAVEMVLIRLAHAVQL 351 (369)
Q Consensus 321 l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~~ 351 (369)
+.++.+.|.+|+|+..+||-+.+||.++.+.
T Consensus 249 i~~a~~~l~~~~~~~~~~~~~~l~~~~l~~~ 279 (290)
T PRK05917 249 IERAVQALDNSSSATSCLEWVALQLVSLQNR 279 (290)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999998503676689999999999987637
No 40
>KOG0989 consensus
Probab=100.00 E-value=0 Score=384.58 Aligned_cols=307 Identities=22% Similarity=0.308 Sum_probs=244.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
++||+++|+.|+|++.++-+|| |||+||||+|||++|++||++|||++ ..|||.|..|.....|...
T Consensus 38 ~~gQe~vV~~L~~a~~~~~lp~-~LFyGPpGTGKTStalafar~L~~~~-------~~~~rvl~lnaSderGisv----- 104 (346)
T KOG0989 38 LAGQEHVVQVLKNALLRRILPH-YLFYGPPGTGKTSTALAFARALNCEQ-------LFPCRVLELNASDERGISV----- 104 (346)
T ss_pred HCCHHHHHHHHHHHHHHCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCC-------CCCCCHHHHCCCCCCCCCC-----
T ss_conf 5015999999999986068860-78668999867689999999855742-------3555424313660014310-----
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4 81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF 160 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~ 160 (369)
........++.+.... -...+....|||+|+||||.||.+||+||+|+||.++.+|+|||+|+++++|+++|+||||.|
T Consensus 105 vr~Kik~fakl~~~~~-~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~Kf 183 (346)
T KOG0989 105 VREKIKNFAKLTVLLK-RSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKF 183 (346)
T ss_pred HHHHHCCHHHHHHCCC-CCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCHHHHHHHHHH
T ss_conf 0665237998750255-656788986328997416453099999999998625466599997388564772877467771
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCC-CCCCHHHHHHH
Q ss_conf 10245400135678764310134562566445653167642001100011100000012103220001-35677777888
Q 537021.9.peg.4 161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLML-ALADRNRIMDL 239 (369)
Q Consensus 161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~ll-g~~~~~~i~~L 239 (369)
+|+++.++++...|+.|+.+||+++|++++++|+..|+||+|||+..|+|+.. .+..|+...+.+.+ |.++.+.+.++
T Consensus 184 rFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~-~gk~It~~~~~e~~~GvVp~~~l~~l 262 (346)
T KOG0989 184 RFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSL-LGKRITTSLVNEELAGVVPDEKLLDL 262 (346)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHC-CCCCCCHHHHHHHHHCCCCHHHHHHH
T ss_conf 28876447899999999888589978789999999738728999999998610-47636458899998626878999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 87630136334678876543047621357877753489999997457412234499889999999986299899999999
Q 537021.9.peg.4 240 FGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQ 319 (369)
Q Consensus 240 l~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq 319 (369)
++.++.+|..+..+.++.+.+.|+++.++++.|..++-+.. +........-.........+..+.+.+...+-
T Consensus 263 le~a~S~d~~~~v~~~Rei~~sg~~~~~lmsQLa~vi~~~~-------g~~d~~k~~~~~kl~~~~~~~~dg~~l~~~L~ 335 (346)
T KOG0989 263 LELALSADTPNTVKRVREIMRSGYSPLQLMSQLAEVIMDII-------GLSDEQKAQISLKLFTRDKRLEDGEDLELALK 335 (346)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-------CCCHHHHHHHHHHHHHCCCHHHCCHHHHHHHH
T ss_conf 99997068388999999999824679999999999987055-------65617899999999702612200125899999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999830
Q 537021.9.peg.4 320 MILKGISEIE 329 (369)
Q Consensus 320 ~l~~a~~~Lk 329 (369)
.+..+..+++
T Consensus 336 ~L~~~~~ql~ 345 (346)
T KOG0989 336 DLLEAEKQLR 345 (346)
T ss_pred HHHHHHHHHH
T ss_conf 9999899974
No 41
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=0 Score=374.31 Aligned_cols=297 Identities=15% Similarity=0.187 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 48999999999982876706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4 4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA 83 (369)
Q Consensus 4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~ 83 (369)
+++|++.|+|++++||+||||||+||+|+||+++|+.||+++||...... ..|..| ..+.+.|+.+.
T Consensus 3 ~e~iv~~L~nai~~~klsHAYLF~G~~G~Gk~~~a~~~a~~l~~~~~~~~----~~~~~~------~~~~~id~~~~--- 69 (303)
T PRK07132 3 DNNIIKSLDNLAKQNKISHSFLLKSNYNNDLDESILYFLNKFNNLQSLNL----NLEELP------YNIFLFDIFDE--- 69 (303)
T ss_pred CHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC----CCCCCC------CCCEEECCCCC---
T ss_conf 03899999999984997616886789986799999999999729987888----754565------32304133222---
Q ss_pred CCCCHHHHHHHHHHHHHHHH-CCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 22334555665554456542-04652377511566480016789999972122111466506754330356754333210
Q 537021.9.peg.4 84 SHTSIDDVREIIDQIYYKPI-SARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDL 162 (369)
Q Consensus 84 s~~~id~ir~l~~~~~~~p~-~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f 162 (369)
.++++++|+.++++.++|. +|+|||||||+||+||.+|||||||||||||++|+|||+|++|+++||||+||||+|+|
T Consensus 70 -~i~~~~i~~~i~~~~~~~~~~~~~Kv~IIdea~~lt~~A~NaLLKtLEEPp~~~~fil~t~~~~~il~TI~SRCq~~~f 148 (303)
T PRK07132 70 -DLSKEEFLSAIEKFSFSSFVSNQKKILIIKNIEKTSNSSLNALLKTIEEPSKNTYFLLTTKNINKVIPTIVSRCQVINV 148 (303)
T ss_pred -CHHHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHCCHHHHHHHHHHCCCCCCCEEEEEEECCHHHCCHHHHHCCEEEEC
T ss_conf -0016889999999973665568706999816553399999999987038986848999728824383778636656637
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 24540013567876431013456256644565316764200110001110000001210322000135677777888876
Q 537021.9.peg.4 163 HRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLFGY 242 (369)
Q Consensus 163 ~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll~a 242 (369)
++++.++|..+|.+ ++ ..++....+++.+. ++.+|.... ..+ ..+.+.+. .+.+..
T Consensus 149 ~~~~~~~i~~~l~e----~~--~~~e~~~~~a~~~~-n~~~a~~~~-------~~e-~~~~~~~~---------~~~l~~ 204 (303)
T PRK07132 149 KEPDQQKILAKLLS----QN--KEKEFEKFYAYIFK-NFEDAIKYI-------SKI-SENLVKKF---------IKALNK 204 (303)
T ss_pred CCCCHHHHHHHHHH----CC--CCCHHHHHHHHHHC-CHHHHHHHH-------HHH-HHHHHHHH---------HHHHHH
T ss_conf 88999999999986----47--75278999999974-758899998-------642-39999999---------999998
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 30136334678876543047621357877753489999997457412234499889999999986299899999999999
Q 537021.9.peg.4 243 LIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQMIL 322 (369)
Q Consensus 243 i~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~l~ 322 (369)
....+ ......+++.... .+...+...+..|+++++..+.... .......+....++. -...+..+++.+.
T Consensus 205 ~~~~~-~~~~~fl~~~~~~-~~~~~l~~ll~~~~~~i~~~~~~~~--~~~~k~~~~~~~~~~-----~~~~~~~ii~~id 275 (303)
T PRK07132 205 SLKEK-YSLLIFLNEKLNK-ENALFLVKLLLFYFKSIFLNKKKKK--IKNSKKTFLFEKYKE-----IKISFYKVMTSID 275 (303)
T ss_pred HHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_conf 74114-7899999988778-4799999999999999988601001--688998999999988-----8878999999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 9999830278889999999999953
Q 537021.9.peg.4 323 KGISEIEGFSRPMEAVEMVLIRLAH 347 (369)
Q Consensus 323 ~a~~~Lk~n~np~L~lE~lLlkL~~ 347 (369)
++...|+.|+|..++.|++++++..
T Consensus 276 ~~~~~L~aNvNF~L~~E~mll~I~e 300 (303)
T PRK07132 276 EFLTKLEQNENFFIQKQAFLLKINI 300 (303)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 9999887034889999999999998
No 42
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=0 Score=380.94 Aligned_cols=250 Identities=18% Similarity=0.220 Sum_probs=220.6
Q ss_pred CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC-CCCHHHHHHHHHHH
Q ss_conf 67062010787988889999999996146877788665878999779999779877822245332-23345556655544
Q 537021.9.peg.4 20 IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAAS-HTSIDDVREIIDQI 98 (369)
Q Consensus 20 ~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s-~~~id~ir~l~~~~ 98 (369)
-|||+|+.|++|+|+..++..||++|.|+.+. .|||+|++|+++.+|+|||++.+.+.. .+++|++|+++..+
T Consensus 7 ~~halLl~~~~G~~~~~~~~~~~k~LlC~~~~------~PCG~C~sC~~i~~g~HPD~~~i~pe~~sIkieqir~li~~l 80 (262)
T PRK05818 7 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKAN------GFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKL 80 (262)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC------CCCCCCHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 98505664487764699999999986228999------999888627867558999779971664557798999999998
Q ss_pred HHHHHC-CCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 565420-4652377511566480016789999972122111466506754330356754333210245400135678764
Q 537021.9.peg.4 99 YYKPIS-ARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKI 177 (369)
Q Consensus 99 ~~~p~~-~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i 177 (369)
++.|.+ |++||+||++||+||.+|||||||+|||||++|+|||+|++++++||||+|||+++.+.+.......+...+.
T Consensus 81 ~~~s~e~~g~KV~II~~Ae~Mt~~AANALLKtLEEPp~nt~fIL~t~~~~~LLPTIrSRC~~~~~~~~~~~~~~~~~~~~ 160 (262)
T PRK05818 81 NRPSVESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKVESND 160 (262)
T ss_pred HHCCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 21140028848999877787499999999986128987838999738814373088877014466643466788887408
Q ss_pred HHHCCCCCCHHHHH-HHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHH---CCCHHHHHH
Q ss_conf 31013456256644-56531676420011000111000000121032200013567777788887630---136334678
Q 537021.9.peg.4 178 LQEESIEFDPEAVA-MIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLFGYLI---KGDIINVLQ 253 (369)
Q Consensus 178 ~~~E~i~~d~~~l~-~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll~ai~---~~d~~~al~ 253 (369)
...|.+..+....+ .+...++||+||+++++||+++..++.++.+++..++|..+...+.++++.+. +++.++++.
T Consensus 161 ~~~~~i~~~~~s~de~~~~~~~gs~~~~l~il~~~i~~~n~~~~~~~~~~l~~~i~~~~i~~ll~~~~~~~d~~~k~~~~ 240 (262)
T PRK05818 161 RYFQYILLSFYSVDEQLQAYNNGSFSKLKNIIETLINKKNKLIQIHKAWILFKTFSYYEIAQLLNLLIPTVDPEKKSKLY 240 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 88987641011079999886167688899999999875688433999999983135999999998731266852268899
Q ss_pred HHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 8765430476213578777534
Q 537021.9.peg.4 254 EFSSQYDSGVNPSVILHDLAEF 275 (369)
Q Consensus 254 ~l~~l~~~g~d~~~iL~~Ll~~ 275 (369)
.+-+..+...+...++..+++|
T Consensus 241 ~~~~~~~~n~~~~~l~~~~is~ 262 (262)
T PRK05818 241 NLLSNLKYNLPKTALFANIISW 262 (262)
T ss_pred HHHHHHHCCCCHHHHHHHHHCC
T ss_conf 8998774497689999997359
No 43
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.6e-42 Score=330.47 Aligned_cols=199 Identities=33% Similarity=0.483 Sum_probs=175.8
Q ss_pred CCCHHHHHHHHHHHHH-CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf 9284899999999998-287670620107879888899999999961468777886658789997799997798778222
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFK-SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVE 79 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~-~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e 79 (369)
++|++.++..+...+. .+++||||||+||+|+||+++|.+||+.|+|+.+... .+|+.|.+|+.+..|+|||++|
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~d~le 78 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGL----LPCGHCRSCKLIPAGNHPDFLE 78 (325)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCC----CCCCHHHHHHHHCCCCCCCEEE
T ss_conf 433235899999999865888761003799999789999999999658664334----5520022444320256886599
Q ss_pred CCCCCCC----CHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 4533223----345556655544565420465237751156648001678999997212211146650675433035675
Q 537021.9.peg.4 80 LDAASHT----SIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLS 155 (369)
Q Consensus 80 ~~~~s~~----~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~S 155 (369)
+++.... .+|+||++.++.+..|..|++||+||||||.||.+|+|||||++||||.+++|||+|++|++++|||+|
T Consensus 79 l~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~S 158 (325)
T COG0470 79 LNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRS 158 (325)
T ss_pred ECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCHHHCHHHHHH
T ss_conf 77321333300699999999860446566772699973203269888876754332488871699974985556478775
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHH
Q ss_conf 433321024540013567876431013456256644565316764200110001110000
Q 537021.9.peg.4 156 RCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARC 215 (369)
Q Consensus 156 Rcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~ 215 (369)
|||+++|+|++ .+..|+..| ++++..++..+.|++|.|++.++ +.+..
T Consensus 159 Rc~~i~f~~~~------~~~~i~~~e-----~~~l~~i~~~~~gd~r~~i~~lq-~~~~~ 206 (325)
T COG0470 159 RCQRIRFKPPS------RLEAIAWLE-----DQGLEEIAAVAEGDARKAINPLQ-ALAAL 206 (325)
T ss_pred HEEEEECCCCC------HHHHHHHHH-----HHHHHHHHHHHCCHHHHHCCHHH-HHHHC
T ss_conf 60788767741------889999850-----75799999870406887348999-99861
No 44
>PRK13342 recombination factor protein RarA; Reviewed
Probab=100.00 E-value=6.3e-40 Score=314.70 Aligned_cols=241 Identities=30% Similarity=0.444 Sum_probs=207.6
Q ss_pred CCCHHHHH---HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 92848999---999999982876706201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4 1 MIGQKPMI---KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV 77 (369)
Q Consensus 1 iiGq~~~~---~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~ 77 (369)
+|||++++ ..|+++++++++|| +||+|||||||||+|+++|+.++| ++
T Consensus 15 ~vGQ~hllg~~~~L~~~i~~~~~~s-~Il~GPPG~GKTTlA~iiA~~~~~----------------------------~f 65 (417)
T PRK13342 15 VVGQEHLLGPGKPLRRMIEAGRLSS-MILWGPPGTGKTTLARIIAGATDA----------------------------EF 65 (417)
T ss_pred HCCCHHHHCCCHHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCC----------------------------CE
T ss_conf 5798776089719999997699975-998896999899999999998689----------------------------88
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECC-CC-CCCHHHHH
Q ss_conf 22453322334555665554456542046523775115664800167899999721221114665067-54-33035675
Q 537021.9.peg.4 78 VELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTE-IR-KIPITVLS 155 (369)
Q Consensus 78 ~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~-~~-~ll~TI~S 155 (369)
++++|++ .||+++|++++.+.... .|+..|++|||+|+||+..|++||+.+|+ ..++||.+||+ |. .|.++|+|
T Consensus 66 ~~lnA~~-~gv~dir~ii~~a~~~~-~~~~tilfiDEIHRfnK~QQD~LLp~vE~--g~iiLIgATTENP~f~in~aLlS 141 (417)
T PRK13342 66 EALSAVT-SGVKDLREVIEEAKQSR-LGRRTILFIDEIHRFNKAQQDALLPHVED--GTITLIGATTENPSFEVNPALLS 141 (417)
T ss_pred EEEECCC-CCHHHHHHHHHHHHHHH-CCCCEEEEEECHHHCCHHHHHHHHHHHHC--CCEEEEEECCCCCHHHCCHHHHH
T ss_conf 9961410-38899999999988631-48965999978200588999999875112--65699974157922534898985
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHH--CCCCHHHHHHCC
Q ss_conf 43332102454001356787643101-----34562566445653167642001100011100000--012103220001
Q 537021.9.peg.4 156 RCQRFDLHRISIGDLIELFTKILQEE-----SIEFDPEAVAMIARASDGSARDGLSLLDQAIARCN--DKIVTSSVRLML 228 (369)
Q Consensus 156 Rcq~~~f~~l~~~~i~~~L~~i~~~E-----~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~--~~i~~e~v~~ll 228 (369)
|||+|.|++++.++|...|.++++.| ++.++++++..|+..|+|++|.|||+||.+..... ..|+.+.+.+.+
T Consensus 142 Rc~vf~l~~L~~~di~~iL~ral~~e~~~~~~i~i~~~al~~i~~~s~GDaR~aLN~LE~a~~~~~~~~~i~~~~~~~~~ 221 (417)
T PRK13342 142 RAQVFELKPLSEEDLEQLLKRALEDERGLGRKLELDDEALDALARLADGDARRALNLLELAAAAAAGGEVITLELLEEAL 221 (417)
T ss_pred HHHHEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 65700205899999999999999877433788776999999999814985999999999998525899734899999998
Q ss_pred CCC----------CHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 356----------7777788887630136334678876543047621357877753
Q 537021.9.peg.4 229 ALA----------DRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAE 274 (369)
Q Consensus 229 g~~----------~~~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~ 274 (369)
+.. ..+.+--+.+++...|+..++.|+..+.+.|.||..+...|+.
T Consensus 222 ~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpdAAlyyLarml~~GEDp~~IaRRLii 277 (417)
T PRK13342 222 QRRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVI 277 (417)
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 44103577786347899999999851699548999999999759997999999999
No 45
>KOG0991 consensus
Probab=100.00 E-value=7.4e-40 Score=314.19 Aligned_cols=299 Identities=21% Similarity=0.285 Sum_probs=253.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
|||++..++.|+-..+.|.+|| ++|+||||+||||.+.++|+.|+..+... -++|+
T Consensus 29 IVGNe~tv~rl~via~~gnmP~-liisGpPG~GKTTsi~~LAr~LLG~~~ke-----------------------~vLEL 84 (333)
T KOG0991 29 IVGNEDTVERLSVIAKEGNMPN-LIISGPPGTGKTTSILCLARELLGDSYKE-----------------------AVLEL 84 (333)
T ss_pred HHCCHHHHHHHHHHHHCCCCCC-EEEECCCCCCHHHHHHHHHHHHHCHHHHH-----------------------HHHHC
T ss_conf 2177989999999997289986-67527999861648999999983806665-----------------------76320
Q ss_pred CCCCCCCHHHHHHHHH-HHHHHHH--CCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 5332233455566555-4456542--046523775115664800167899999721221114665067543303567543
Q 537021.9.peg.4 81 DAASHTSIDDVREIID-QIYYKPI--SARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRC 157 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~-~~~~~p~--~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRc 157 (369)
+|....|||-+|+-++ +++.+-. .|++||+|+||||.||..||.||.+|||=+...|.|.|+|+..+|++++|+|||
T Consensus 85 NASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KIiEPIQSRC 164 (333)
T KOG0991 85 NASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEKIIEPIQSRC 164 (333)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHH
T ss_conf 57655460899999999987203489985248996152202068999999999997063200000154213222677345
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHH
Q ss_conf 33210245400135678764310134562566445653167642001100011100000012103220001356777778
Q 537021.9.peg.4 158 QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIM 237 (369)
Q Consensus 158 q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~ 237 (369)
-.++|.++++.++..+|.+|++.|++.|++++++.|...|+|+||.|+|.| |+...+.+-++.|+|.++.+.+....+.
T Consensus 165 AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnL-Qst~~g~g~Vn~enVfKv~d~PhP~~v~ 243 (333)
T KOG0991 165 AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNL-QSTVNGFGLVNQENVFKVCDEPHPLLVK 243 (333)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH-HHHHCCCCCCCHHHHHHCCCCCCHHHHH
T ss_conf 765322267899999999999870788771147785544166199999999-9874054524632310006999859999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 88876301363346788765430476213578777534899999974574122344998899999999862998999999
Q 537021.9.peg.4 238 DLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRF 317 (369)
Q Consensus 238 ~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~ 317 (369)
+++.++.+++...+++.+.++++.|++|.+++..+ ||-. |.. .+.+..+ ..+
T Consensus 244 ~ml~~~~~~~~~~A~~il~~lw~lgysp~Dii~~~---FRv~---K~~-------~~~E~~r---------------lE~ 295 (333)
T KOG0991 244 KMLQACLKRNIDEALKILAELWKLGYSPEDIITTL---FRVV---KNM-------DVAESLR---------------LEF 295 (333)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHH---HHHH---HHC-------CHHHHHH---------------HHH
T ss_conf 99999986129999999999997489889999999---9999---842-------5788999---------------999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999983027888999999999995330499
Q 537021.9.peg.4 318 WQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQLP 352 (369)
Q Consensus 318 lq~l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~~~ 352 (369)
+..+.-+.-.+-..+|..|.|--++.+||.....+
T Consensus 296 ikeig~thmrI~eGv~s~LQl~glla~l~~~~~k~ 330 (333)
T KOG0991 296 IKEIGLTHMRILEGVNSLLQLSGLLAKLCKVGEKA 330 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99972678489863768999999999999840434
No 46
>PRK04195 replication factor C large subunit; Provisional
Probab=100.00 E-value=3.6e-35 Score=279.58 Aligned_cols=235 Identities=21% Similarity=0.377 Sum_probs=187.2
Q ss_pred CCCHHHHHHHHHHHHH---CCCCCE-EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf 9284899999999998---287670-620107879888899999999961468777886658789997799997798778
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFK---SGRIAQ-SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVD 76 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~---~~~~~h-a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d 76 (369)
||||+.+++.|.+.++ .|+.+| ++||+||||+||||+|+++|+.+++ +
T Consensus 16 ivg~~~~v~~l~~Wl~~w~~g~~~~k~lLL~GPpGvGKTT~a~~lAk~~g~----------------------------~ 67 (403)
T PRK04195 16 VVGNEKAKKQLREWIESWLKGKPPKKALLLYGPPGVGKTSLAHALANDYGW----------------------------E 67 (403)
T ss_pred HHCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC----------------------------C
T ss_conf 858899999999999998739965746998893998799999999998499----------------------------8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHH-HH-CCCCCEEEEECHHHCCC----CHHHHHHHHHHHCCCCCCEEEEECCC-CCC
Q ss_conf 2224533223345556655544565-42-04652377511566480----01678999997212211146650675-433
Q 537021.9.peg.4 77 VVELDAASHTSIDDVREIIDQIYYK-PI-SARFRVYIMDEVQMLST----AAFNGLLKTLEEPPPHVKFIFATTEI-RKI 149 (369)
Q Consensus 77 ~~e~~~~s~~~id~ir~l~~~~~~~-p~-~~~~kv~iid~a~~m~~----~a~NaLLK~lEEPp~~~~fil~t~~~-~~l 149 (369)
++|++|+..++++.||+++..++.. +. ..++|++|+||+|.|+. .+..+|++++|++ ...||++|+++ ++.
T Consensus 68 viElNASD~R~~~~I~~~i~~~~~~~sl~~~~~KlIIlDEvD~l~~~~d~gg~~al~~~ik~s--~~PiIli~Nd~~~~~ 145 (403)
T PRK04195 68 VIELNASDQRTKDVIERVAGEASTSGSLFGAKRKLILLDEVDGIHGNADRGGVRAILEIIKKA--KNPIILTANDPYDPS 145 (403)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC--CCEEEEEECCCCCCC
T ss_conf 599771011478999999998760688778873499963434457244479999999998548--870899826845567
Q ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCC
Q ss_conf 03567543332102454001356787643101345625664456531676420011000111000000121032200013
Q 537021.9.peg.4 150 PITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLA 229 (369)
Q Consensus 150 l~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg 229 (369)
+.+|+|||+.++|++++..+|..+|++||.+||+++++++++.|+..|+||+|.|+|.| |+++.+++.++.+++.. -+
T Consensus 146 ~~~lrs~c~~i~F~~~~~~~I~~~L~~I~~~Egi~i~~~aL~~Ia~~s~GDlR~aIN~L-Q~~~~~~~~~~~~~~~~-~~ 223 (403)
T PRK04195 146 LRPLRNACLMIEFKRLSKRSIVPVLKRICRKEGIECEEEALREIAERSGGDLRSAINDL-QAIAEGGGRITLDDVKT-GE 223 (403)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHH-HHHHCCCCCCCHHHHHH-HC
T ss_conf 17799766122179949999999999999976999999999999998797399999999-99974899775666664-13
Q ss_pred CCCHHHHHHHHHHHHCC-CHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 56777778888763013-633467887654304762135787
Q 537021.9.peg.4 230 LADRNRIMDLFGYLIKG-DIINVLQEFSSQYDSGVNPSVILH 270 (369)
Q Consensus 230 ~~~~~~i~~Ll~ai~~~-d~~~al~~l~~l~~~g~d~~~iL~ 270 (369)
.-....+|+.++.+++. +...+..... ....+|..++.
T Consensus 224 rd~~~~if~~~~~if~~~~~~~a~~~~~---~~d~dpd~~~~ 262 (403)
T PRK04195 224 RDREESIFEALDAVFKSRNYDQALEASY---DVDEDPDDLIQ 262 (403)
T ss_pred CCCCCCHHHHHHHHHCCCCHHHHHHHHH---CCCCCHHHHHH
T ss_conf 5231438999999975698999999885---24799899999
No 47
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=100.00 E-value=1.7e-32 Score=259.79 Aligned_cols=241 Identities=27% Similarity=0.388 Sum_probs=196.8
Q ss_pred CCCHHHHH---HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 92848999---999999982876706201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4 1 MIGQKPMI---KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV 77 (369)
Q Consensus 1 iiGq~~~~---~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~ 77 (369)
+|||+|++ ..|+++|++++++ +++|+|||||||||+|+++|+..++ .|
T Consensus 30 ~vGQ~hllg~g~~Lrr~i~~~~~~-S~Il~GPPGtGKTTLA~iIA~~t~~----------------------------~F 80 (726)
T PRK13341 30 FVGQDHILGEGRLLRRAIKADRVG-SLILYGPPGVGKTTLARIIANHTRA----------------------------HF 80 (726)
T ss_pred HCCCHHHCCCCCHHHHHHHCCCCC-EEEEECCCCCCHHHHHHHHHHHHCC----------------------------CE
T ss_conf 359575428982899999769998-2788897999999999999887488----------------------------67
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHH-HHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECC-CC-CCCHHHH
Q ss_conf 224533223345556655544565-42046523775115664800167899999721221114665067-54-3303567
Q 537021.9.peg.4 78 VELDAASHTSIDDVREIIDQIYYK-PISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTE-IR-KIPITVL 154 (369)
Q Consensus 78 ~e~~~~s~~~id~ir~l~~~~~~~-p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~-~~-~ll~TI~ 154 (369)
++++|. ..||.++|++++.+... ...|+.-|.+|||.|++|+.-|++||..+|. ..+++|-+||+ |. .|.++++
T Consensus 81 ~~lsAv-~sgvkdlr~ii~~A~~~~~~~g~~tILFIDEIHRfNK~QQD~LLp~vE~--G~i~LIGATTENP~F~vn~ALl 157 (726)
T PRK13341 81 SSLNAV-LAGVKDLRAEVDAAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN--GTVTLIGATTENPYFEVNKALV 157 (726)
T ss_pred EEEECC-CCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHCC--CEEEEEEECCCCCCEEECHHHH
T ss_conf 998562-0377999999999999987459965999862542588789987888606--8389997047897436429888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHH--C----CCCH
Q ss_conf 543332102454001356787643101-------34562566445653167642001100011100000--0----1210
Q 537021.9.peg.4 155 SRCQRFDLHRISIGDLIELFTKILQEE-------SIEFDPEAVAMIARASDGSARDGLSLLDQAIARCN--D----KIVT 221 (369)
Q Consensus 155 SRcq~~~f~~l~~~~i~~~L~~i~~~E-------~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~--~----~i~~ 221 (369)
|||++|.|++++.+++...|.+.+..+ ++.+++++++.|++.|+|+.|.|||.||.++.... + .++.
T Consensus 158 SR~~vf~L~~L~~~dl~~il~rAl~d~~~g~~~~~i~i~~~al~~l~~~s~GDaR~aLN~LElav~~~~~~~~~~~~i~~ 237 (726)
T PRK13341 158 SRSRLFRLKSLEDEDLHQLLKRALQDKERGYGDRNIDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDGVIHINL 237 (726)
T ss_pred HHCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEECH
T ss_conf 32346674389999999999999876743256678775989999999975973999999999999707457688344359
Q ss_pred HHHHHCC----------CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 3220001----------356777778888763013633467887654304762135787775
Q 537021.9.peg.4 222 SSVRLML----------ALADRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLA 273 (369)
Q Consensus 222 e~v~~ll----------g~~~~~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll 273 (369)
+.+.+.+ |....+.+--+++++...|+..++.++..+.+.|.||..+...|+
T Consensus 238 ~~~~~~~~~~~~~YDk~GD~HYd~iSAfiKSiRGSDpDAALywLARMLeaGEDP~fIaRRLi 299 (726)
T PRK13341 238 AIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRML 299 (726)
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999985666056877517889999999986548967899999999975998899999999
No 48
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.2e-32 Score=261.06 Aligned_cols=243 Identities=28% Similarity=0.418 Sum_probs=200.0
Q ss_pred CCCHHHHH---HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 92848999---999999982876706201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4 1 MIGQKPMI---KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV 77 (369)
Q Consensus 1 iiGq~~~~---~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~ 77 (369)
+|||+|++ ..|+++++++++++ .+||||||+||||+|+++|++.+|. |
T Consensus 26 ~vGQ~HLlg~~~~lrr~v~~~~l~S-mIl~GPPG~GKTTlA~liA~~~~~~----------------------------f 76 (436)
T COG2256 26 VVGQEHLLGEGKPLRRAVEAGHLHS-MILWGPPGTGKTTLARLIAGTTNAA----------------------------F 76 (436)
T ss_pred HCCHHHHHCCCCHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCC----------------------------E
T ss_conf 5571866189943899996499860-5777899988889999998761776----------------------------6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECC-CC-CCCHHHHH
Q ss_conf 22453322334555665554456542046523775115664800167899999721221114665067-54-33035675
Q 537021.9.peg.4 78 VELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTE-IR-KIPITVLS 155 (369)
Q Consensus 78 ~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~-~~-~ll~TI~S 155 (369)
.+++|.+ .||.++|++++........|+.-|.+|||+|++|+.-|.+||-.+|. ..++||-+||+ |+ .|-+.|+|
T Consensus 77 ~~~sAv~-~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~--G~iilIGATTENPsF~ln~ALlS 153 (436)
T COG2256 77 EALSAVT-SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVEN--GTIILIGATTENPSFELNPALLS 153 (436)
T ss_pred EEECCCC-CCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHHHHHCC--CEEEEEECCCCCCCEEECHHHHH
T ss_conf 9951523-46799999999999987258834998722533374456551033248--86899962678987140388861
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHC--CCC-----CCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHC--CCCHHHHHH
Q ss_conf 43332102454001356787643101--345-----625664456531676420011000111000000--121032200
Q 537021.9.peg.4 156 RCQRFDLHRISIGDLIELFTKILQEE--SIE-----FDPEAVAMIARASDGSARDGLSLLDQAIARCND--KIVTSSVRL 226 (369)
Q Consensus 156 Rcq~~~f~~l~~~~i~~~L~~i~~~E--~i~-----~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~--~i~~e~v~~ 226 (369)
|||+|.|+|++.++|...|.+.+..+ ++. +++++++.+++.++|+.|.|||.||-++..... .+..+.+.+
T Consensus 154 R~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~ 233 (436)
T COG2256 154 RARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEE 233 (436)
T ss_pred HHHEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 10415651699899999999998654137776556688899999998628619999889999998627775247999999
Q ss_pred CCCCC----------CHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 01356----------77777888876301363346788765430476213578777534
Q 537021.9.peg.4 227 MLALA----------DRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEF 275 (369)
Q Consensus 227 llg~~----------~~~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~ 275 (369)
+++.. ..+.+--+.+++...|...++.++-.+++.|.||..+-..|+.+
T Consensus 234 ~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylaRmi~~GeDp~yiARRlv~~ 292 (436)
T COG2256 234 ILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRI 292 (436)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 98655205677763478999999986126883789999999996688789999999999
No 49
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=100.00 E-value=6.8e-33 Score=262.80 Aligned_cols=182 Identities=24% Similarity=0.300 Sum_probs=148.0
Q ss_pred CCCHHHHHHHHHHHHH-----CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 9284899999999998-----28767062010787988889999999996146877788665878999779999779877
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFK-----SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHV 75 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~-----~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~ 75 (369)
+|||++++..|+++++ ++.++| .|||||||+||||+|+++|++++|.-.....|
T Consensus 26 ~vGQehl~~~l~~~i~a~~~~~~~l~h-~lf~GPPG~GKTTlAriiAk~~~~~~~~~s~~-------------------- 84 (234)
T pfam05496 26 YIGQEKVKENLKIFIEAAKKRGEALDH-VLLYGPPGLGKTTLANIIANEMGVNIRITSGP-------------------- 84 (234)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCEEEECCH--------------------
T ss_conf 069499999999999988742777662-78878999988899999998408753761426--------------------
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHH----------CCCC--------C
Q ss_conf 822245332233455566555445654204652377511566480016789999972----------1221--------1
Q 537021.9.peg.4 76 DVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEE----------PPPH--------V 137 (369)
Q Consensus 76 d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEE----------Pp~~--------~ 137 (369)
.++..+++..-+ ...+++.|++|||+|++|+..|++||+.+|+ |+.+ .
T Consensus 85 -----------~i~~~~di~~~l---~~~~~~~ILFIDEIHr~nK~qqd~Llp~vE~g~i~i~ig~~~~A~~~~~e~P~F 150 (234)
T pfam05496 85 -----------ALEKPGDLAAIL---TNLEPGDVLFIDEIHRLNRAVEEILYPAMEDFRLDIVIGKGPSARSIRLDLPPF 150 (234)
T ss_pred -----------HHHHHHHHHHHH---HHCCCCCEEEEECHHHCCHHHHHHCCCCCCCCEEEEEECCCCCCEEEECCCCCE
T ss_conf -----------664389999999---845899889996654358768874455334616999963676632465268975
Q ss_pred CEEEEECCCCCCCHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHH
Q ss_conf 1466506754330356754333-210245400135678764310134562566445653167642001100011100000
Q 537021.9.peg.4 138 KFIFATTEIRKIPITVLSRCQR-FDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCN 216 (369)
Q Consensus 138 ~fil~t~~~~~ll~TI~SRcq~-~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~ 216 (369)
.||.+||++.++++|++|||.+ ++|.+++.+++.+.|++.+..++++++++++..||+.|+|++|+|+++|||+..++.
T Consensus 151 tLIgATTe~~~l~~pl~sR~~i~~~l~~l~~edl~~il~r~~~~l~i~i~~eal~~IA~~s~Gd~R~ALnlLe~v~d~a~ 230 (234)
T pfam05496 151 TLVGATTRAGLLTSPLRDRFGIVLRLEFYSVEELEEIVKRSARILGVEIDEEGAAEIARRSRGTPRIANRLLRRVRDFAQ 230 (234)
T ss_pred EEEEECCCCCCCCHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 99852156664777799762112442468999999999999998399959999999999779989999899999999998
Q ss_pred C
Q ss_conf 0
Q 537021.9.peg.4 217 D 217 (369)
Q Consensus 217 ~ 217 (369)
-
T Consensus 231 ~ 231 (234)
T pfam05496 231 V 231 (234)
T ss_pred H
T ss_conf 7
No 50
>KOG0990 consensus
Probab=99.97 E-value=1.4e-31 Score=253.02 Aligned_cols=255 Identities=23% Similarity=0.288 Sum_probs=210.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
+|||+.++..+.+....+++|| .||+||||+||++...+.|+-|-|..+..+ -+.|+
T Consensus 43 v~~~~ei~st~~~~~~~~~lPh-~L~YgPPGtGktsti~a~a~~ly~~~~~~~----------------------m~lel 99 (360)
T KOG0990 43 VIKQEPIWSTENRYSGMPGLPH-LLFYGPPGTGKTSTILANARDFYSPHPTTS----------------------MLLEL 99 (360)
T ss_pred HHCCCCHHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHCCCCCCHH----------------------HHHHH
T ss_conf 7337721247888626888975-343489988998736665665058998246----------------------99986
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH----HC--CCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH
Q ss_conf 5332233455566555445654----20--46523775115664800167899999721221114665067543303567
Q 537021.9.peg.4 81 DAASHTSIDDVREIIDQIYYKP----IS--ARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVL 154 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~~~~~~p----~~--~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~ 154 (369)
++....|+|-+|+-+....... +. ..+|.+|+||||+||.+|||||.+.+|.+..++.|+++++.|.++.|.++
T Consensus 100 naSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ii~n~~~ki~pa~q 179 (360)
T KOG0990 100 NASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTANTRFATISNPPQKIHPAQQ 179 (360)
T ss_pred HCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHCCCHHH
T ss_conf 43676688614788898776416400024676158873341376698999999999871332379986167644681464
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHH-----HHHHCCC
Q ss_conf 54333210245400135678764310134562566445653167642001100011100000012103-----2200013
Q 537021.9.peg.4 155 SRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTS-----SVRLMLA 229 (369)
Q Consensus 155 SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e-----~v~~llg 229 (369)
|||++|+|.+++..++...+.+|++.|...+++++...+++.+.|+||.|++.|+ ..+...+.+... .++...|
T Consensus 180 sRctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lq-s~~~~~~~~~e~~~~~~~vy~c~g 258 (360)
T KOG0990 180 SRCTRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQ-SILKKVMERKELNNPNDLVYQCKG 258 (360)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCHHHHHHHCC
T ss_conf 1044578788875442467888871531103878899999986777999999999-999985777877772156787149
Q ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHH
Q ss_conf 567777788887630136334678876543-04762135787775348999
Q 537021.9.peg.4 230 LADRNRIMDLFGYLIKGDIINVLQEFSSQY-DSGVNPSVILHDLAEFTHLV 279 (369)
Q Consensus 230 ~~~~~~i~~Ll~ai~~~d~~~al~~l~~l~-~~g~d~~~iL~~Ll~~~rdl 279 (369)
.+...++.++++.+++++...+......+. ..|.+....+..+..+++.+
T Consensus 259 ~p~~~dI~~I~~~il~~~~~~~~~~is~lk~~~gla~~d~i~~l~~~~~~~ 309 (360)
T KOG0990 259 APQPSDIRQIIEKRMNGEDIELMLDDSELKKPKGLARQDRRAELEQRFAIV 309 (360)
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 997667999999972282498875256540333168999999999988988
No 51
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=1.1e-29 Score=239.19 Aligned_cols=142 Identities=20% Similarity=0.307 Sum_probs=117.7
Q ss_pred HHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHH---HHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC---
Q ss_conf 9999999998287670620107879888899999999---9614687778866587899977999977987782224---
Q 537021.9.peg.4 7 MIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIAR---SLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL--- 80 (369)
Q Consensus 7 ~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~---~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~--- 80 (369)
+++.|.+.+.+++++|||||.|. +.+.....+++ .++|.+... -.++||+.-+
T Consensus 1 ~ie~L~n~lknnKlsns~l~~~~---N~~~~l~~~~~fi~~~~~~~~~~------------------le~~pd~~~i~~~ 59 (263)
T PRK06581 1 IIERLEFNLKHNKLYNSWLIEAE---NIEQALKDLEKFIYIKLFKNSIP------------------LENNPDYHFIARE 59 (263)
T ss_pred CHHHHHHHHHCCHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHCCCCC------------------CCCCCCHHHHHHH
T ss_conf 95789888741324466643078---86799999999999998626865------------------2358328887420
Q ss_pred -CC---CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf -53---32233455566555445654204652377511566480016789999972122111466506754330356754
Q 537021.9.peg.4 81 -DA---ASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSR 156 (369)
Q Consensus 81 -~~---~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SR 156 (369)
++ +.+++|||||++.++++.+|.+|+|||+|||+||.||.+|||||||+|||||.+++|||+|++++.|||||+||
T Consensus 60 ~~~~sn~KnI~IdQIR~L~~fl~~ts~~s~~KV~IId~Ae~mn~~AaNALLK~LEEPP~nt~iiLiT~~~~~LLpTIrSR 139 (263)
T PRK06581 60 TSATSNAKNISIEQIRKLQDFLNKTSAISGYKVAIIYSADLMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSR 139 (263)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHCHHHHHHHHHHHCCCCCCCEEEEEECCHHHCCCHHHHC
T ss_conf 34566567357999999999963475468945999947677498989989987418987828999869824461465434
Q ss_pred HHHHHCCCCCCHH
Q ss_conf 3332102454001
Q 537021.9.peg.4 157 CQRFDLHRISIGD 169 (369)
Q Consensus 157 cq~~~f~~l~~~~ 169 (369)
||.++|+....++
T Consensus 140 Cq~inf~s~~~~~ 152 (263)
T PRK06581 140 CFKINCRSSALHA 152 (263)
T ss_pred CEEEECCCCHHHH
T ss_conf 5787358810444
No 52
>PRK04132 replication factor C small subunit; Provisional
Probab=99.96 E-value=1.5e-27 Score=223.44 Aligned_cols=210 Identities=15% Similarity=0.147 Sum_probs=186.3
Q ss_pred EECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 51156648001678999997212211146650675433035675433321024540013567876431013456256644
Q 537021.9.peg.4 112 MDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVA 191 (369)
Q Consensus 112 id~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~ 191 (369)
||+|+.+|.+++.|+..++|-...+|.||+.|++.+||+|+|+|||-+|+|+|++++++..+|.+|++.||+++++++++
T Consensus 651 i~~a~~~t~d~~~~~~r~~~~~~~~~~~~~SCNYsSKIIePIQSRCavFRF~PL~~e~v~~RL~~Ia~~Egv~itedGle 730 (863)
T PRK04132 651 IKKEYIGYKDVYDITCHNDHSFIANGFVSHNCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQ 730 (863)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 57888665779999987787642056179866760407416655624788368999999999999999749976778999
Q ss_pred HHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH-HHHCCCCHHHHHH
Q ss_conf 565316764200110001110000001210322000135677777888876301363346788765-4304762135787
Q 537021.9.peg.4 192 MIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLFGYLIKGDIINVLQEFSS-QYDSGVNPSVILH 270 (369)
Q Consensus 192 ~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll~ai~~~d~~~al~~l~~-l~~~g~d~~~iL~ 270 (369)
.|...|+|+||+|+|.| |+.+...+.++.+.|+.+.|.+....+.+++++++++|...+.+.+.+ +++.|+...+++.
T Consensus 731 AI~~~aeGDMRkAIN~L-Qsaa~~~~~Vt~d~Vy~v~~~p~P~~I~~~l~~al~g~f~~A~~~L~~ll~~~GlS~~DII~ 809 (863)
T PRK04132 731 AILYVAEGDMRRAINVL-QAAAALDTKITDENVFKVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLV 809 (863)
T ss_pred HHHHHCCCCHHHHHHHH-HHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 99997567489999999-99986169878889999708999899999999997299899999999999966969899999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 77534899999974574122344998899999999862998999999999999999830278889999999999953304
Q 537021.9.peg.4 271 DLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQ 350 (369)
Q Consensus 271 ~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~ 350 (369)
.+...... +. ++...-..+++.+.+++.+|-..+|.++.++.++.+++.+..
T Consensus 810 ~i~r~v~~-------------l~---------------ipe~~kv~li~~ige~e~Rl~eGa~e~IQL~ALlA~f~l~g~ 861 (863)
T PRK04132 810 QMHREVFN-------------LP---------------IDEPKKVYLADKIGEYNFRLVEGANEMIQLEALLAQFTLMGK 861 (863)
T ss_pred HHHHHHHH-------------CC---------------CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99999961-------------79---------------987899999999976670331488869999999999997357
No 53
>KOG2035 consensus
Probab=99.94 E-value=1.9e-25 Score=207.79 Aligned_cols=311 Identities=17% Similarity=0.216 Sum_probs=203.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCC---CCCC-CCCCCCCHHHHHHHCCCCCC
Q ss_conf 9284899999999998287670620107879888899999999961468777---8866-58789997799997798778
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHI---DVPT-VEFEGFGEHCQAIIRGNHVD 76 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~---~~~~-~~~c~~c~~c~~i~~~~~~d 76 (369)
+++|+.....|......+.+|| +||+||.|.||+|.+.++-+.|....-.- ...+ ..|.++- ..+..-+...
T Consensus 15 l~~~~e~~~~Lksl~~~~d~PH-ll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kk---lEistvsS~y 90 (351)
T KOG2035 15 LIYHEELANLLKSLSSTGDFPH-LLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKK---LEISTVSSNY 90 (351)
T ss_pred CCCHHHHHHHHHHHCCCCCCCE-EEEECCCCCCCHHHHHHHHHHHHCCCCHHEEEEEEEEECCCCCE---EEEEEECCCC
T ss_conf 3318888899987414577870-78888898872111899999885787245056667886488863---7999942565
Q ss_pred CCCCCCCCCCCHH--HHHHHHHHHHHH-HH----CCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 2224533223345--556655544565-42----0465237751156648001678999997212211146650675433
Q 537021.9.peg.4 77 VVELDAASHTSID--DVREIIDQIYYK-PI----SARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKI 149 (369)
Q Consensus 77 ~~e~~~~s~~~id--~ir~l~~~~~~~-p~----~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~l 149 (369)
.+|+.|..-.-.| -|.++++.+.+. |. +-.|||++|.|||.+|.+||.||.+|||.+..++..||+|++.+++
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~Sri 170 (351)
T KOG2035 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRI 170 (351)
T ss_pred EEEECHHHCCCCCHHHHHHHHHHHHHHCCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 17747343375117999999999874141333266654899980357650889999999999986071699992674302
Q ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCC
Q ss_conf 03567543332102454001356787643101345625664456531676420011000111000000121032200013
Q 537021.9.peg.4 150 PITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLA 229 (369)
Q Consensus 150 l~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg 229 (369)
+++|+|||..++.+.+++++|...|..++++||+....+.+..||+.|+||+|+|+-+||-+- ..+...+.+. ..+.-
T Consensus 171 IepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~-~~n~~~~a~~-~~i~~ 248 (351)
T KOG2035 171 IEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVR-VNNEPFTANS-QVIPK 248 (351)
T ss_pred HHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH-HCCCCCCCCC-CCCCC
T ss_conf 267762205876789987899999999998733448499999999970643999999999998-5465432557-87799
Q ss_pred CCCHHHHHHHHHHHHCCCHHHHH----HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 56777778888763013633467----88765430476213578777534899999974574122344998899999999
Q 537021.9.peg.4 230 LADRNRIMDLFGYLIKGDIINVL----QEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQY 305 (369)
Q Consensus 230 ~~~~~~i~~Ll~ai~~~d~~~al----~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~ 305 (369)
.-....+.++.+.+.......-+ ..+..+......|..++..|+..+
T Consensus 249 ~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL~~CIPP~~Ilk~Ll~~L----------------------------- 299 (351)
T KOG2035 249 PDWEIYIQEIARVILKEQSPAKLLEVRGRLYELLSHCIPPNTILKELLEEL----------------------------- 299 (351)
T ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-----------------------------
T ss_conf 449999999999998603878899999999999865698588999999999-----------------------------
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 86299899999999999999983027888999999999995
Q 537021.9.peg.4 306 SKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLA 346 (369)
Q Consensus 306 a~~i~~~~L~~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~ 346 (369)
-...+...-....+...+-+.+++.+.-.-.++|.++.+.+
T Consensus 300 l~~~d~~~k~~~~~~Aa~yEhRl~lG~KaIfHLEaFVA~fM 340 (351)
T KOG2035 300 LLKCDTQLKLEVIQHAAKYEHRLRLGQKAIFHLEAFVAKFM 340 (351)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 84588244899999998889998605236663999999999
No 54
>KOG2028 consensus
Probab=99.93 E-value=7.8e-25 Score=203.36 Aligned_cols=316 Identities=22% Similarity=0.313 Sum_probs=226.2
Q ss_pred CCCHHHHH---HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 92848999---999999982876706201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4 1 MIGQKPMI---KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV 77 (369)
Q Consensus 1 iiGq~~~~---~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~ 77 (369)
.|||++++ ..|++.|++||+| +++||||||+||||+||.+|..- .. ..--+
T Consensus 140 yvGQ~hlv~q~gllrs~ieq~~ip-SmIlWGppG~GKTtlArlia~ts----k~---------------------~Syrf 193 (554)
T KOG2028 140 YVGQSHLVGQDGLLRSLIEQNRIP-SMILWGPPGTGKTTLARLIASTS----KK---------------------HSYRF 193 (554)
T ss_pred HCCHHHHCCCCHHHHHHHHCCCCC-CEEEECCCCCCHHHHHHHHHHHC----CC---------------------CCEEE
T ss_conf 505344148326899998708887-05886699876588999998605----77---------------------74279
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHH-HHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECC-CC-CCCHHHH
Q ss_conf 22453322334555665554456-542046523775115664800167899999721221114665067-54-3303567
Q 537021.9.peg.4 78 VELDAASHTSIDDVREIIDQIYY-KPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTE-IR-KIPITVL 154 (369)
Q Consensus 78 ~e~~~~s~~~id~ir~l~~~~~~-~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~-~~-~ll~TI~ 154 (369)
+|+.+. +.++.++|++.+..+- ....+++-|++|||+|++|+..|..||-.+|. ..+.||-+||+ |+ ++...+.
T Consensus 194 velSAt-~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~--G~I~lIGATTENPSFqln~aLl 270 (554)
T KOG2028 194 VELSAT-NAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVEN--GDITLIGATTENPSFQLNAALL 270 (554)
T ss_pred EEEECC-CCCHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHCCCCEECC--CCEEEEECCCCCCCCCHHHHHH
T ss_conf 997414-5661889999999887876524406987377655323211003421306--7069985366897601127787
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHH----HCC---------CCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCH-------
Q ss_conf 5433321024540013567876431----013---------45625664456531676420011000111000-------
Q 537021.9.peg.4 155 SRCQRFDLHRISIGDLIELFTKILQ----EES---------IEFDPEAVAMIARASDGSARDGLSLLDQAIAR------- 214 (369)
Q Consensus 155 SRcq~~~f~~l~~~~i~~~L~~i~~----~E~---------i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~------- 214 (369)
|||.+|-+.+++.+.+...|.+-.. .|. +.+++..++.++..++|+.|.|||.||-.++.
T Consensus 271 SRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~g~ 350 (554)
T KOG2028 271 SRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRSGQ 350 (554)
T ss_pred HCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 31606673368889999999999876321025688999831245688999998704731888877899999988752477
Q ss_pred -HHCCCCHHHHHHCC----------CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-H---
Q ss_conf -00012103220001----------35677777888876301363346788765430476213578777534899-9---
Q 537021.9.peg.4 215 -CNDKIVTSSVRLML----------ALADRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHL-V--- 279 (369)
Q Consensus 215 -~~~~i~~e~v~~ll----------g~~~~~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rd-l--- 279 (369)
.+..++.++|.+.+ |....+.+-.+-+++..+|....+.++..+.+.|.||..+...|.++-.. +
T Consensus 351 ~~~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSmRG~D~nAslY~LaRMLegGEdPLYVARRlvR~ASEDIGla 430 (554)
T KOG2028 351 SSRVLLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLA 430 (554)
T ss_pred CCCCEECHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 65640028889999853120004553057789999987601776552799999997168870799999998751033767
Q ss_pred ---HHHHH--CCCCCCCCCCCHHHHHH---HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHH
Q ss_conf ---99974--57412234499889999---9999862998999999999999999830278889--99999999995
Q 537021.9.peg.4 280 ---TRIKY--IPEMADTLLYSEAENAR---ALQYSKEVSITFLSRFWQMILKGISEIEGFSRPM--EAVEMVLIRLA 346 (369)
Q Consensus 280 ---l~~k~--~~~~~~~~~~~~~e~~~---i~~~a~~i~~~~L~~~lq~l~~a~~~Lk~n~np~--L~lE~lLlkL~ 346 (369)
++.+. .-++...+.+++-+... ...+|.--..-.++++|..+..+..+ ...+++. +.+-..=.+|+
T Consensus 431 D~S~L~~Avaa~qav~~vGmPE~dviLAqC~v~lA~APKSievYra~~~vka~ls~-~~~~~~~vPlHlRNAPTkLM 506 (554)
T KOG2028 431 DPSALTQAVAAYQAVHFVGMPECDVILAQCVVYLARAPKSIEVYRAYNAVKACLSN-HQGPLPEVPLHLRNAPTKLM 506 (554)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHHCCCHHHH
T ss_conf 80366889999888888089358889999999998486303999999999999743-25788888730302737899
No 55
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=99.93 E-value=1.2e-23 Score=194.67 Aligned_cols=310 Identities=17% Similarity=0.210 Sum_probs=252.1
Q ss_pred HHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 99999982876706201078798888999999999614687778866587899977999977987782224533223345
Q 537021.9.peg.4 10 TLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSID 89 (369)
Q Consensus 10 ~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id 89 (369)
.|.+.++.+ +++.|||+|+.-.=+......+.+.+...... -.++..+|+.. .
T Consensus 6 ~l~~~lkk~-l~pvyli~G~e~~li~~~~~~i~~~~~~~~~~----------------------~~n~~~~d~~~-~--- 58 (336)
T PRK05574 6 QLEAHLKKG-LAPVYLLYGDEPLLLQEAKDAIRAAARAQGFD----------------------ERNVFTVDGSE-T--- 58 (336)
T ss_pred HHHHHHHCC-CCCEEEEECCHHHHHHHHHHHHHHHHHCCCCC----------------------CEEEEEEECCC-C---
T ss_conf 999998278-98679998586999999999999986077865----------------------30589971686-9---
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECHHHCCC----CHHHHHHHHHHHCCCCCCEEEEECCC--C------CCCHHHHHHH
Q ss_conf 5566555445654204652377511566480----01678999997212211146650675--4------3303567543
Q 537021.9.peg.4 90 DVREIIDQIYYKPISARFRVYIMDEVQMLST----AAFNGLLKTLEEPPPHVKFIFATTEI--R------KIPITVLSRC 157 (369)
Q Consensus 90 ~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~----~a~NaLLK~lEEPp~~~~fil~t~~~--~------~ll~TI~SRc 157 (369)
++.++.+.+.-.|.-|++|++++.+++.++. ...+.|.+.++.||+++..+|++..+ + +...++..-+
T Consensus 59 ~~~~l~~~~~t~slf~~krlViv~~~~~~~~k~~~~~l~~l~~~l~~~~~~~~lvli~~~~~~d~~~k~~k~~k~l~~~~ 138 (336)
T PRK05574 59 DWDDVLEACQSLPLFSDRKLVELRLPEGLTGKKGEEALKRLEAYLENPLPHTDLLLLAPLPKLDKRKEKSAWFKALKKKA 138 (336)
T ss_pred CHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCE
T ss_conf 99999998648997789759999888766531137999999998707999976999987786336888899999998480
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHC-CCCHHHHHHCCCCCCHHHH
Q ss_conf 332102454001356787643101345625664456531676420011000111000000-1210322000135677777
Q 537021.9.peg.4 158 QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCND-KIVTSSVRLMLALADRNRI 236 (369)
Q Consensus 158 q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~-~i~~e~v~~llg~~~~~~i 236 (369)
..+.|.+++..++..|+++.+..+|++++++++++++...+||++.+.+.+|++..++++ .|+.++|..+++......+
T Consensus 139 ~~i~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~It~~dV~~~v~~~~~~~~ 218 (336)
T PRK05574 139 VVVEAQTPKEAELPQWIQQRLKQQGLRIDAAALQLLAERVEGNLLALAQEIEKLALLYPDGKITLEDVEEAVPDSARFDV 218 (336)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCH
T ss_conf 79980699989999999999998499989899999999721139999999999998378888789999998616433567
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC-------CCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 888876301363346788765430476213578777534899999974574-------1223449988999999998629
Q 537021.9.peg.4 237 MDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPE-------MADTLLYSEAENARALQYSKEV 309 (369)
Q Consensus 237 ~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~-------~~~~~~~~~~e~~~i~~~a~~i 309 (369)
|+|.+++..+|...++..++++...|.+|..++..+.+++|.+..++...+ ....+.+++.....+.++++++
T Consensus 219 f~L~dai~~~~~~~al~~l~~l~~~~~~~~~il~~l~~~~r~l~~ik~~~~~g~~~~~i~~~l~i~~~~~~~~~~~~~~~ 298 (336)
T PRK05574 219 FDLVDAILAGKIARALRILDGLRLEGEEPIKLLAALQREFRLLLQLKILLQQGYPLQQLFKELRVWPYRRKLALRALQRL 298 (336)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHCC
T ss_conf 99999998789999999999999779972999999999999999999998769999999988399999999999999729
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 9899999999999999983027888999999999995
Q 537021.9.peg.4 310 SITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLA 346 (369)
Q Consensus 310 ~~~~L~~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~ 346 (369)
+...|.+++..+.+++..+|++.++.+++|+++++|.
T Consensus 299 s~~~L~~~l~~l~~~D~~iK~~~d~~~~lEl~ll~l~ 335 (336)
T PRK05574 299 SLKQLEQAIQLLAETDRQIKTDYDKDLWLELFLLSLL 335 (336)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 9999999999999999997189995499999999842
No 56
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=99.93 E-value=1.7e-23 Score=193.38 Aligned_cols=304 Identities=14% Similarity=0.157 Sum_probs=239.0
Q ss_pred CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 67062010787988889999999996146877788665878999779999779877822245332233455566555445
Q 537021.9.peg.4 20 IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIY 99 (369)
Q Consensus 20 ~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~ 99 (369)
+| -|||+|+...=.......+-+.+...+. .-.|+..+|+. ..+.+.++++.+.
T Consensus 1 ~P-vYll~GeE~~li~~~~~~i~~~~~~~~~----------------------~~fn~~~~dg~---e~~~~~~~l~~a~ 54 (326)
T PRK07452 1 MP-IYLYWGEDDFALNQAIEKLIDQVVDPEW----------------------KSFNYSRLDGD---DAEQAIQALNEAM 54 (326)
T ss_pred CC-EEEEEECCHHHHHHHHHHHHHHCCCCCC----------------------CCCCEEEECCC---CCCHHHHHHHHHC
T ss_conf 98-8999838289999999999996089544----------------------67623787375---5425999999862
Q ss_pred HHHHCCCCCEEEEECHHHCCC---CHHHHHHHHHHHCCCCCCEEEEECC-CC---CCCHHHHHHHHHHHCCCC---CCHH
Q ss_conf 654204652377511566480---0167899999721221114665067-54---330356754333210245---4001
Q 537021.9.peg.4 100 YKPISARFRVYIMDEVQMLST---AAFNGLLKTLEEPPPHVKFIFATTE-IR---KIPITVLSRCQRFDLHRI---SIGD 169 (369)
Q Consensus 100 ~~p~~~~~kv~iid~a~~m~~---~a~NaLLK~lEEPp~~~~fil~t~~-~~---~ll~TI~SRcq~~~f~~l---~~~~ 169 (369)
-.|+-|++|++|+.++..++. +....|.+.++.||++|++||++++ ++ |+-..+........|..+ ..++
T Consensus 55 T~Pf~~~~RlVvvk~a~~~~~~~~~~~~~l~~~l~~~p~~t~lv~~~~~k~D~R~K~~K~l~k~~~~~ef~~~~~~~~~~ 134 (326)
T PRK07452 55 TPPFGSGGRLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLPPPWDGEG 134 (326)
T ss_pred CCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHEEEEEECCCCCCCHHH
T ss_conf 78877885599983661002487889999999861799975999984676323778789998401134540688657999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHH-C--CCCHHHHHHCCCCCCHHHHHHHHHHHHCC
Q ss_conf 35678764310134562566445653167642001100011100000-0--12103220001356777778888763013
Q 537021.9.peg.4 170 LIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCN-D--KIVTSSVRLMLALADRNRIMDLFGYLIKG 246 (369)
Q Consensus 170 i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~-~--~i~~e~v~~llg~~~~~~i~~Ll~ai~~~ 246 (369)
+..|+.+.+.+.|.++++++++.++...++|++..-+-+|++..|.+ + .|+.++|..+++. ....+|++.+++..+
T Consensus 135 l~~wi~~~~~~~g~~i~~~a~~~Lv~~~G~dl~~l~~EleKL~ly~~~~~~~It~e~V~~lv~~-~~~~iF~L~dAi~~~ 213 (326)
T PRK07452 135 QKQLVERTAQELGVKLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSEKPISAEDVKALVSN-TTQNSLQLADALLQG 213 (326)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCC-CCCCHHHHHHHHHCC
T ss_conf 9999999999869998999999999986843999999999999862899970689999988277-644099999999868
Q ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--------CCCCC-CHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 6334678876543047621357877753489999997457412--------23449-98899999999862998999999
Q 537021.9.peg.4 247 DIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMA--------DTLLY-SEAENARALQYSKEVSITFLSRF 317 (369)
Q Consensus 247 d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~--------~~~~~-~~~e~~~i~~~a~~i~~~~L~~~ 317 (369)
|...++..++++...|.+|..++..+.++||.++.+|...+.+ ....+ ++.....+.+++++++.++|.++
T Consensus 214 ~~~~Al~~l~~Ll~~ge~pi~Ila~l~~q~r~ll~vk~l~~~G~~~~~~ia~~lgi~~P~r~~~~~~~~~~~s~~~L~~~ 293 (326)
T PRK07452 214 NTGEALALIDDLLDANEPALRIVATLTGQFRTWLWVKLLVESGERDVKVIAKAAGIGNPKRIYFLRKEVQGLSSQQLLKL 293 (326)
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHH
T ss_conf 99999999999998799889999999999999999999997489779999998289982789999999867999999999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 999999999830278889999999999953304
Q 537021.9.peg.4 318 WQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQ 350 (369)
Q Consensus 318 lq~l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~ 350 (369)
++.+.+++.++|++.+|..+||.++++||++.+
T Consensus 294 l~~l~~~D~~iKsG~~~~~ale~~v~~lc~~~~ 326 (326)
T PRK07452 294 LPLLLDLEASLKQGANPINAFQDKLIELCQLLQ 326 (326)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
T ss_conf 999999999864799868999999999960439
No 57
>PRK05629 hypothetical protein; Validated
Probab=99.92 E-value=8.1e-23 Score=188.47 Aligned_cols=305 Identities=13% Similarity=0.144 Sum_probs=250.8
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 70620107879888899999999961468777886658789997799997798778222453322334555665554456
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYY 100 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~ 100 (369)
|+-|||+|+...-.-..-..+-..+.-..+... -.++.++++. .+..+++ ++-.+.
T Consensus 16 pPvYLl~G~E~yLid~a~~~l~~~i~~~~~~~~--------------------~~n~~~~~~~-e~~~~~l---~~a~~~ 71 (331)
T PRK05629 16 PAVHLVLGEDEFLAERARINIVHDIRSSMASPD--------------------SLQVTTLKAS-EITQGEL---LDALSP 71 (331)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCC--------------------CCEEEEEECC-CCCHHHH---HHHCCC
T ss_conf 997999717199999999999999986288744--------------------6225885078-7999999---987375
Q ss_pred HHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCC---CCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 54204652377511566480016789999972122111466506754---330356754333210245400135678764
Q 537021.9.peg.4 101 KPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIR---KIPITVLSRCQRFDLHRISIGDLIELFTKI 177 (369)
Q Consensus 101 ~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~---~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i 177 (369)
|.-|.+|++|+.+++..+.+....++.-+++|++.|++|++....+ ++..+|..-.-.+.+.++.+.++..|+.+.
T Consensus 72 -~~F~~~RlVvv~~~~~~~~~~~d~ll~y~~~p~p~t~LV~~~~~~dkrkkl~k~l~k~g~v~e~~~l~~~~l~~wi~~~ 150 (331)
T PRK05629 72 -SLFAEDRVVVLTNMDQAGQDAVDLALSAAVDPSPGTYLIVMHSGGGRSKSMVKKLEKVAVVHDAAKLKDRDRPGWVKQE 150 (331)
T ss_pred -CCCCCCEEEEEECHHHCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHCCEEEEECCCCCHHHHHHHHHHH
T ss_conf -8888825999957253064479999998419999649999845875106799998607469866889999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 31013456256644565316764200110001110000001210322000135677777888876301363346788765
Q 537021.9.peg.4 178 LQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLFGYLIKGDIINVLQEFSS 257 (369)
Q Consensus 178 ~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll~ai~~~d~~~al~~l~~ 257 (369)
+..+|.+++++++++++...+++++...+-++|++++.++.|+.++|..+++......+|++.+++..+|...++..++.
T Consensus 151 ~~~~g~~i~~~A~~~L~~~~G~DL~~l~~El~KL~~~~~g~It~e~V~~~~~~~~e~~~F~l~dai~~~~~~~Al~~l~~ 230 (331)
T PRK05629 151 FKNHKVQVTPDVIHALLEGVGSDLRELASAVSQLVEDTQGNVTVEKVRAYYVGVAEVSGFDIADSACAGQVSKAVASTRR 230 (331)
T ss_pred HHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99869997999999999996804999999999984077998589999998269733528679999986688999999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHCCC------CCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC-
Q ss_conf 430476213578777534899999974574------1223449988999999998629989999999999999998302-
Q 537021.9.peg.4 258 QYDSGVNPSVILHDLAEFTHLVTRIKYIPE------MADTLLYSEAENARALQYSKEVSITFLSRFWQMILKGISEIEG- 330 (369)
Q Consensus 258 l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~------~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~l~~a~~~Lk~- 330 (369)
+...|.+|..++..|..++|.+..+..... ....+.+++....++..++++++.+.|.+++..+.+++..+|+
T Consensus 231 ll~~g~~Pv~i~a~L~~~~r~l~~~~~~~~~~~~~~iA~~Lgv~P~~vkk~~~qar~~s~~~L~~a~~~l~~~D~~~Kgg 310 (331)
T PRK05629 231 ALQLGTSPVALAAALSMKVGQIARLYSTRGRINGFELAKELGMPPFVVEKTAKVARNWSGDAVSEAVILMADLDAAVKGQ 310 (331)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99759992999999999999999999751699989999883999899999999982699999999999999999982078
Q ss_pred CCCHHHHHHHHHHHHHHHCC
Q ss_conf 78889999999999953304
Q 537021.9.peg.4 331 FSRPMEAVEMVLIRLAHAVQ 350 (369)
Q Consensus 331 n~np~L~lE~lLlkL~~~~~ 350 (369)
..+|.+++|.+++++|.+.+
T Consensus 311 ~~dp~~alE~~i~~i~~~~~ 330 (331)
T PRK05629 311 SGDPEFAIESAVRRVAELAR 330 (331)
T ss_pred CCCHHHHHHHHHHHHHHHHC
T ss_conf 89888999999999999826
No 58
>PRK07914 hypothetical protein; Reviewed
Probab=99.85 E-value=5.4e-19 Score=160.26 Aligned_cols=301 Identities=16% Similarity=0.164 Sum_probs=243.0
Q ss_pred CCEEEHHCCCCCCCHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC--CCCCCCCCCCCHHHHHHHHH
Q ss_conf 670620107879888899-999999961468777886658789997799997798778--22245332233455566555
Q 537021.9.peg.4 20 IAQSYMLSGTRGIGKTTT-ARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVD--VVELDAASHTSIDDVREIID 96 (369)
Q Consensus 20 ~~ha~lf~G~~G~GK~~~-a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d--~~e~~~~s~~~id~ir~l~~ 96 (369)
.+.-|||+|+...=.... ..+..... ....+|| +.++++.. ....+ +.+
T Consensus 4 pAPvyLi~G~E~~L~erav~~~~~~ar------------------------~~~~~~d~~~~~l~a~~-~~~~~---l~~ 55 (320)
T PRK07914 4 PSPLHLVLGDEELLVERAVAAVLRSAR------------------------KRAGTADVPVDRLRAGD-VSTYE---LAE 55 (320)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHH------------------------HHCCCCCCEEEEECCCC-CCHHH---HHH
T ss_conf 998799970819999999999999998------------------------50379984346621466-88889---998
Q ss_pred HHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCC---CCCCHHHHHH-HHHHHCCCC-CCHHHH
Q ss_conf 44565420465237751156648001678999997212211146650675---4330356754-333210245-400135
Q 537021.9.peg.4 97 QIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEI---RKIPITVLSR-CQRFDLHRI-SIGDLI 171 (369)
Q Consensus 97 ~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~---~~ll~TI~SR-cq~~~f~~l-~~~~i~ 171 (369)
-.+ .|.-|.+|+++|.+++.++.+....|+..+.+||+.|..++..+.. .+++..++.- ..++.+.++ .+.+..
T Consensus 56 ~~s-pSLFae~RlVvv~~~~~~~~~~~~~l~~yl~~p~~~t~LV~~h~gg~k~Kkl~~~lkk~ga~v~~~~~l~k~~e~~ 134 (320)
T PRK07914 56 LLS-PSLFAEERVVVLEAAAEAGKDAVALIESAAADLPAGTVLVVVHSGGGRAKALANQLRKLGAQVHPCARITKASERA 134 (320)
T ss_pred HHC-CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHH
T ss_conf 718-6766884499983611026889999999852999980899970587404679999997699898655658868999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHH
Q ss_conf 67876431013456256644565316764200110001110000001210322000135677777888876301363346
Q 537021.9.peg.4 172 ELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLFGYLIKGDIINV 251 (369)
Q Consensus 172 ~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll~ai~~~d~~~a 251 (369)
.|+.+-+...|..+++++.+.++...++++|..-+.++|++++.++.|+.+.|..+++-.-+...|++.+++..||...+
T Consensus 135 ~~v~~e~~~~g~~i~~~A~~~Lv~~vG~dl~eLaae~~qL~~d~~g~It~~~V~~~~~g~~e~~~F~vaDaa~~g~~~~A 214 (320)
T PRK07914 135 DFVRKEFRSLRVKVDDETVTALLDAVGSDIRELASACSQLVADTGGAVDAAAVRRYHSGKAEVKGFDIADKAVAGDVAGA 214 (320)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEHHHHHHHHHCCCHHHH
T ss_conf 99999999859999999999999998623999999999996057997369999999289712209999999987899999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 788765430476213578777534899999974574----1223449988999999998629989999999999999998
Q 537021.9.peg.4 252 LQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPE----MADTLLYSEAENARALQYSKEVSITFLSRFWQMILKGISE 327 (369)
Q Consensus 252 l~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~----~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~l~~a~~~ 327 (369)
+..++.....|.+|..++..|...+|.+..++.... ....+.+++...++...++++++.+.|.++++.+.+++.+
T Consensus 215 L~~lr~al~~G~~pv~i~~alA~~~R~la~v~~~~~~~~~~A~~lg~~Pw~v~ka~~qar~ws~~~l~~ai~~la~~D~~ 294 (320)
T PRK07914 215 AEALRWAMMRGEPHVVLADALAEAVHTIGRVGPLSGDPYRLAGQLGMPPWRVQKAQKQARRWSRDTVATAMRVVAALNAD 294 (320)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999749974999999999999999988613998999988299959999999998179999999999999999998
Q ss_pred HHCCC-CHHHHHHHHHHHHHHHC
Q ss_conf 30278-88999999999995330
Q 537021.9.peg.4 328 IEGFS-RPMEAVEMVLIRLAHAV 349 (369)
Q Consensus 328 Lk~n~-np~L~lE~lLlkL~~~~ 349 (369)
+|+.. +|..++|.+++++|.+.
T Consensus 295 vKg~~~dp~~alE~~v~~ia~~~ 317 (320)
T PRK07914 295 VKGAAADADYALESAVRRVAELV 317 (320)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 54788887889999999999984
No 59
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=99.84 E-value=2.6e-18 Score=155.19 Aligned_cols=312 Identities=15% Similarity=0.137 Sum_probs=238.5
Q ss_pred HHHHHHC--CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 9999982--87670620107879888899999999961468777886658789997799997798778222453322334
Q 537021.9.peg.4 11 LTNAFKS--GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSI 88 (369)
Q Consensus 11 l~~~~~~--~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~i 88 (369)
+.+++.+ ..++ +|||+||.---+...+..+++.+.-.. ..+ .++..+++.. ..
T Consensus 9 ~~~f~~~p~~~~~-~~LlyG~d~glv~e~~~~l~~~~~~~~-~~~---------------------f~~~~l~~~e-l~- 63 (343)
T PRK06585 9 IDRFLARPDGKIR-AVLLYGPDRGLVRERARRLAKSVVDDP-DDP---------------------FAVVRLDGDE-LD- 63 (343)
T ss_pred HHHHHHCCCCCCE-EEEEECCCHHHHHHHHHHHHHHHCCCC-CCC---------------------CEEEEECHHH-HH-
T ss_conf 9999819864765-899963876479999999999725566-787---------------------4157747998-83-
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH------HHHHHHHC
Q ss_conf 555665554456542046523775115664800167899999721221114665067543303567------54333210
Q 537021.9.peg.4 89 DDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVL------SRCQRFDL 162 (369)
Q Consensus 89 d~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~------SRcq~~~f 162 (369)
++.-.+.+.++-.|.-|++|+++|+++. .....++-..+++|++.+++|+.+.+..+= ..++ ..|-.+.+
T Consensus 64 ~d~~~l~de~~t~slF~~~rlI~i~~~~---d~~~~~l~~~l~~~~~~~~lIi~a~~L~k~-skLrk~~e~~~~~~~i~c 139 (343)
T PRK06585 64 ADPARLEDEANTISLFGGRRLIWVRAGG---KSLAAALKALLAEPPGDAFIVIEAGDLKKG-SSLRKLFETAASAAAIPC 139 (343)
T ss_pred CCHHHHHHHHHCCCCCCCCEEEEEECCC---HHHHHHHHHHHHCCCCCEEEEEECCCCCCC-CHHHHHHHHCCCEEEEEE
T ss_conf 3999999998476876898489972687---256999999981789982899973897731-189999986478699950
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHH--HCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf 24540013567876431013456256644565316764200110001110000--0012103220001356777778888
Q 537021.9.peg.4 163 HRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARC--NDKIVTSSVRLMLALADRNRIMDLF 240 (369)
Q Consensus 163 ~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~--~~~i~~e~v~~llg~~~~~~i~~Ll 240 (369)
-+.+..++.+++.+.+..+|++++++++.+++..++|+...+.+-+|++..|. ++.++.++|..+++......++++.
T Consensus 140 Y~d~~~~l~~~i~~~l~~~g~~i~~~a~~~L~~~~g~d~~~~~~EleKL~ly~~~~~~It~edv~~~v~~~~~~~~~~l~ 219 (343)
T PRK06585 140 YADDERDLARLIDDELAKAGLRITPDARAYLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLDDAA 219 (343)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHH
T ss_conf 06998899999999999829997799999999873427999999999999984899978999999986864102499999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-------CC--CCCCHHHHHHHHHHHHHCCH
Q ss_conf 7630136334678876543047621357877753489999997457412-------23--44998899999999862998
Q 537021.9.peg.4 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMA-------DT--LLYSEAENARALQYSKEVSI 311 (369)
Q Consensus 241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~-------~~--~~~~~~e~~~i~~~a~~i~~ 311 (369)
++++.||...+...++++...|.+|..++..+.++|+.+..++...+.+ .. ..+...+...+.++++.++.
T Consensus 220 da~l~G~~~~a~~~l~~l~~~g~~pi~il~~l~~~~~~L~~i~~~~~~g~~~~~ai~~~rPpiF~k~k~~~~~ql~~w~~ 299 (343)
T PRK06585 220 DAALAGDLAGFERALDRARAEGTAPVLILRAALRHFQQLHIVRLKVENGKSAAQAIASLRPPVFFKRKPDFEKALRRWSL 299 (343)
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCH
T ss_conf 99980899999999999884578779999999999999999999987034599999864899984669999999980999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999998302788-899999999999533049
Q 537021.9.peg.4 312 TFLSRFWQMILKGISEIEGFSR-PMEAVEMVLIRLAHAVQL 351 (369)
Q Consensus 312 ~~L~~~lq~l~~a~~~Lk~n~n-p~L~lE~lLlkL~~~~~~ 351 (369)
..|.+++..+.+++..+|.+.. +...+|.+++++|.....
T Consensus 300 ~~L~~al~~l~~~E~~~K~~~~~~~~i~~~~ll~ia~~a~~ 340 (343)
T PRK06585 300 ERLLRALERLQQAELDCRRNPALAEAIAQRALLSIAVEARR 340 (343)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999998669965999999999999999875
No 60
>pfam12169 DNA_pol3_gamma3 DNA polymerase III subunits gamma and tau domain III. This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with pfam00004. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau.
Probab=99.84 E-value=2.3e-19 Score=163.05 Aligned_cols=143 Identities=46% Similarity=0.750 Sum_probs=138.0
Q ss_pred CCHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 21032200013567777788887630136334678876543047621357877753489999997457412234499889
Q 537021.9.peg.4 219 IVTSSVRLMLALADRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAE 298 (369)
Q Consensus 219 i~~e~v~~llg~~~~~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e 298 (369)
|+.++|.+++|.++++.++++++++.++|..+++..++++++.|.|+..++++++.++|+++++|..++......+++++
T Consensus 1 It~~~V~~mLG~~~~~~l~~L~~aI~~~d~~~~l~~l~~l~~~G~d~~~~l~~L~~~~r~l~~~k~~~~~~~~~~~~~~~ 80 (143)
T pfam12169 1 VSAAQVRDMLGLADRGRVIDLLEAILEGDAAAALAEFRDQYAAGADPVVVLRDLLELLHLLTRLKIAPDAADDLSLPEEE 80 (143)
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf 97999999848998899999999998289999999999999879899999999999999999998676300012257788
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 999999986299899999999999999983027888999999999995330499989999976
Q 537021.9.peg.4 299 NARALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSPEEIARYI 361 (369)
Q Consensus 299 ~~~i~~~a~~i~~~~L~~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~~~s~~~~~~~~ 361 (369)
.+.+.++|+.++.+++.++||++.++..+++.++||++.|||+++||||+.+.|+|+++++++
T Consensus 81 ~~~l~~~a~~~~~~~L~~~~qil~~~~~el~~s~~p~~~lEm~llRl~~~~~~~~~~~~~~~~ 143 (143)
T pfam12169 81 RERIAALAKKLSPEVLSRLWQMLLKGIEEVKNAPDPRQAAEMALLRLAYAADLPSPEEALRRL 143 (143)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHC
T ss_conf 999999986067999999999999999997428886999999999999837594999998649
No 61
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=99.80 E-value=1.1e-16 Score=143.17 Aligned_cols=306 Identities=12% Similarity=0.115 Sum_probs=232.2
Q ss_pred HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 99999998287670620107879888899999999961468777886658789997799997798778222453322334
Q 537021.9.peg.4 9 KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSI 88 (369)
Q Consensus 9 ~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~i 88 (369)
.-|.+.+.+|++|.+|||+|+..-=--..+..+++.+...+... .+ +.| | ...
T Consensus 4 ~e~d~~ik~~~~~~~ylLyG~d~fli~~y~~~I~~~~~~~~~~~---------------~~----yfd--E------~d~ 56 (328)
T PRK08487 4 KELDTLLKQNKLPNAFFLYGEDEFQIEYYAKEISSKFKPEELLK---------------EL----YFD--E------YNF 56 (328)
T ss_pred HHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCHHH---------------HC----CCC--C------CCH
T ss_conf 89999986598884599956857589999999999857752112---------------00----226--5------788
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH--HH----HHHC
Q ss_conf 55566555445654204652377511566480016789999972122111466506754330356754--33----3210
Q 537021.9.peg.4 89 DDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSR--CQ----RFDL 162 (369)
Q Consensus 89 d~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SR--cq----~~~f 162 (369)
++ +...++..|.-|+.|+++|.....+.......|+..+|.||.+.++|....+..+-- .+.+- |. .++|
T Consensus 57 ~~---i~~~l~~~sLFg~~klv~IK~~~ki~~k~l~~Li~~~~~~~~n~~Ii~~~~~~~k~~-~~~k~~~~~~~~~~V~f 132 (328)
T PRK08487 57 SQ---AKDFLSQGSLFGGKNLLVIKTDKKIPKKELKLLIELCEKNSDNFFIIELYEASMKSS-DTEKIFTPKFIAKFVRF 132 (328)
T ss_pred HH---HHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCHHHHH-HHHHHHHHHCCEEEEEE
T ss_conf 99---999973515347774799957774552269999998628977789999706133456-78887766336237751
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 24540013567876431013456256644565316764200110001110000001210322000135677777888876
Q 537021.9.peg.4 163 HRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLFGY 242 (369)
Q Consensus 163 ~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll~a 242 (369)
.++...++..|+++.+.+.|+.++++++..++...++|+.-+.+-+|+...+ +..|+.++|..+.+....-.+++++++
T Consensus 133 f~p~~~el~~~i~~~ak~~g~~Is~~al~~L~e~~g~dL~~~~nELeKL~l~-~~~It~edI~~l~~~~~~~~~~el~~~ 211 (328)
T PRK08487 133 FKPNAWEALKLLQERAKELGLDIDQNALNHLFEIQNENLYLAANELEKLAIL-DAPITLKDIDRLVFGLGSVSFEDLFLK 211 (328)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 3998689999999999991997799999999998596399999899999853-787889999998557666779999999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH----CCC--CCCCC--CCCHHHHHHHHHHHHHCCHHHH
Q ss_conf 301363346788765430476213578777534899999974----574--12234--4998899999999862998999
Q 537021.9.peg.4 243 LIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKY----IPE--MADTL--LYSEAENARALQYSKEVSITFL 314 (369)
Q Consensus 243 i~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~----~~~--~~~~~--~~~~~e~~~i~~~a~~i~~~~L 314 (369)
++++. .....+.++.+.|.+...++..+.++|..+...+. .+. ..+.+ ..++...+.+.++|.+++.++.
T Consensus 212 l~~kk--~~~~~l~~lle~g~n~i~li~~l~~~f~~Lf~~~~~ik~~G~~d~~~ilGy~pP~~i~~~~~~~a~~~~~~~~ 289 (328)
T PRK08487 212 LLKKK--DIKDDLFKLLEEGFNEIALLNSLYRFFYQLFLFFAYIKINGKPDAKEILGYKPPKQIAENLAKQALRLKEAQY 289 (328)
T ss_pred HHCCC--CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHCCHHHH
T ss_conf 97537--2899999999758778999999999999999999999980996889984899988999999999873389999
Q ss_pred HHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHH
Q ss_conf 999999999999830278--8899999999999533
Q 537021.9.peg.4 315 SRFWQMILKGISEIEGFS--RPMEAVEMVLIRLAHA 348 (369)
Q Consensus 315 ~~~lq~l~~a~~~Lk~n~--np~L~lE~lLlkL~~~ 348 (369)
.+++..+.+++.+++.++ ++...+=..|+++-..
T Consensus 290 ~~if~~L~~~e~~~kt~~~~~k~~~l~~~l~~iq~~ 325 (328)
T PRK08487 290 KEIFELLLEWELELKTNSKIDKKEFLFSTLLKIQRI 325 (328)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 999999999999986255556468999999999975
No 62
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=99.78 E-value=4.3e-19 Score=161.02 Aligned_cols=199 Identities=26% Similarity=0.384 Sum_probs=140.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHH-HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf 9284899999999998287670620107879888899999-999961468777886658789997799997798778222
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARI-IARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVE 79 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~-~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e 79 (369)
||||+.=+++|+-|+=-=+=-| -++|||||+|||.+||. |=.+--|... |++. .--|+|
T Consensus 67 IiGQe~GI~ALKAALCGPNPQH-VIiYGPPGVGKTAAARLVLeeAKk~~~S--------PFke-----------~A~FVE 126 (532)
T TIGR02902 67 IIGQEEGIKALKAALCGPNPQH-VIIYGPPGVGKTAAARLVLEEAKKNPAS--------PFKE-----------EAAFVE 126 (532)
T ss_pred CCCCHHHHHHHHHHCCCCCCCE-EEEECCCCCCHHHHHHHHHHHHHCCCCC--------CCCC-----------CCEEEE
T ss_conf 5673556899998606868963-8987886961789999999986508753--------7898-----------866898
Q ss_pred CCCCCC----CCHHH-----HHH----------------HHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC-
Q ss_conf 453322----33455-----566----------------5554456542046523775115664800167899999721-
Q 537021.9.peg.4 80 LDAASH----TSIDD-----VRE----------------IIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP- 133 (369)
Q Consensus 80 ~~~~s~----~~id~-----ir~----------------l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP- 133 (369)
|||+.- +||.| |.| =..-+.-+.+.| |.+|||.=-|+.--=|.|||.||.=
T Consensus 127 iDATT~RFDERGIADPLIGSVHDPIYQGAGplG~AGIPQPK~GAVT~AHGG---vLFIDEIGELHP~~MNKLLKVLEDRK 203 (532)
T TIGR02902 127 IDATTARFDERGIADPLIGSVHDPIYQGAGPLGVAGIPQPKPGAVTKAHGG---VLFIDEIGELHPVQMNKLLKVLEDRK 203 (532)
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---EEEECCCCCCCHHHHHHHHHHHHCCC
T ss_conf 505103602146666567761585333765457885575877763202586---55121246658243531411330222
Q ss_pred ---------------------------CCCCCEEEE-ECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf ---------------------------221114665-0675433035675433321024540013567876431013456
Q 537021.9.peg.4 134 ---------------------------PPHVKFIFA-TTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIEF 185 (369)
Q Consensus 134 ---------------------------p~~~~fil~-t~~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~ 185 (369)
|..-+.|-+ |.+|+-|+|.|||||-=+.||+|..+||.+.-++-++|=|+.+
T Consensus 204 VFLdSAYY~s~~pniP~hI~dIFqnGlPADFRLiGATTR~PeEIpPAlRSRC~EIFFR~L~~EEi~~iAk~AaeKIg~~l 283 (532)
T TIGR02902 204 VFLDSAYYSSEDPNIPSHIRDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLKEEIKEIAKNAAEKIGLNL 283 (532)
T ss_pred CHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 00001235877786542789972067873401213336987767834650522677168887899999876565304654
Q ss_pred CHHHHHHHHHCCCCCCCHHHHCCCCCCCH---H--HCCCCHHHH
Q ss_conf 25664456531676420011000111000---0--001210322
Q 537021.9.peg.4 186 DPEAVAMIARASDGSARDGLSLLDQAIAR---C--NDKIVTSSV 224 (369)
Q Consensus 186 d~~~l~~ia~~s~GslR~Al~lLeq~i~~---~--~~~i~~e~v 224 (369)
+++|+++|.++|.. =|+|+|++ |+.+. . ...|..++|
T Consensus 284 ~~~Al~~I~~Ya~n-GREAvN~~-QLAaG~a~~E~Rk~I~~~Di 325 (532)
T TIGR02902 284 EKEALDLIAKYASN-GREAVNLV-QLAAGIALGENRKRILAEDI 325 (532)
T ss_pred CHHHHHHHHHHHCC-CCHHHHHH-HHHHHHEECCCCCEECHHHH
T ss_conf 75479999987405-40677899-99731401288761205464
No 63
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=99.77 E-value=3.8e-16 Score=139.24 Aligned_cols=311 Identities=16% Similarity=0.183 Sum_probs=236.0
Q ss_pred HHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC-CCCCCH
Q ss_conf 9999998287670620107879888899999999961468777886658789997799997798778222453-322334
Q 537021.9.peg.4 10 TLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDA-ASHTSI 88 (369)
Q Consensus 10 ~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~-~s~~~i 88 (369)
.+...+.+++++..|+++|++-.=....+..+.+... . ...|+.++.. .++.
T Consensus 5 ~~~~~l~~~~~~~v~ll~G~d~~l~~e~~~~i~~~~~-~------------------------~~~~~~~~~~~~~~~-- 57 (334)
T COG1466 5 ELAKHLKKKNLMPVYLLYGEDEGLLEEAADAILKRAL-A------------------------DGFDENYSFFDDSEL-- 57 (334)
T ss_pred HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH-H------------------------CCCCEEEEECCCCCC--
T ss_conf 8999861478751899966864689999999999734-3------------------------156613454365556--
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECHHHCC-CCHHHHHHHHHHHCC-CCCCEEEEECC---CCCCCHHHHHH--HHHHH
Q ss_conf 5556655544565420465237751156648-001678999997212-21114665067---54330356754--33321
Q 537021.9.peg.4 89 DDVREIIDQIYYKPISARFRVYIMDEVQMLS-TAAFNGLLKTLEEPP-PHVKFIFATTE---IRKIPITVLSR--CQRFD 161 (369)
Q Consensus 89 d~ir~l~~~~~~~p~~~~~kv~iid~a~~m~-~~a~NaLLK~lEEPp-~~~~fil~t~~---~~~ll~TI~SR--cq~~~ 161 (369)
++-.+.+.+...|.-|+.+++.|..++... .+..-.+......|| ..++|++.... ..+...++.+= +..+.
T Consensus 58 -~~~~~~~~~~s~~lF~~~~~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~ 136 (334)
T COG1466 58 -DWADLLSELESPSLFGEKRLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVVE 136 (334)
T ss_pred -CHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf -8999998862768778885799877654566427899999853689786899996188752778789888744473466
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHC-CCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf 02454001356787643101345625664456531676420011000111000000-12103220001356777778888
Q 537021.9.peg.4 162 LHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCND-KIVTSSVRLMLALADRNRIMDLF 240 (369)
Q Consensus 162 f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~-~i~~e~v~~llg~~~~~~i~~Ll 240 (369)
..+++..++.+|+...+.+.|++++++++++++...+|+++.+-+-++++..++.+ .|+.++|...++.......|++.
T Consensus 137 ~~~~~~~~l~~~i~~~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~ 216 (334)
T COG1466 137 CKPLDEAELPQWIKKRAKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLA 216 (334)
T ss_pred ECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHH
T ss_conf 25887788999999999991898899999999998588299999999999874789866799999997364557889999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-------CCCCCCHHHHHHHHHHHHHCCHHH
Q ss_conf 7630136334678876543047621357877753489999997457412-------234499889999999986299899
Q 537021.9.peg.4 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMA-------DTLLYSEAENARALQYSKEVSITF 313 (369)
Q Consensus 241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~-------~~~~~~~~e~~~i~~~a~~i~~~~ 313 (369)
+++..||...++..++++...|.+|..++..+.+.|+.+..++...+.+ .....+......+.+...+++...
T Consensus 217 dail~g~~~~a~~~l~~L~~~ge~p~~il~~l~~~f~~~~~l~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~r~s~~~ 296 (334)
T COG1466 217 DALLKGDVKKALRLLRDLLLEGEEPLKLLAALTRQFRLLLQLKALAEKGKSLQQAAKSLGIPYRRKKLFKKAARRLSLKQ 296 (334)
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCHHH
T ss_conf 99987898999999999997699889999999999999999999997364699999882892878899999998759999
Q ss_pred HHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Q ss_conf 9999999999999830278-8899999999999533
Q 537021.9.peg.4 314 LSRFWQMILKGISEIEGFS-RPMEAVEMVLIRLAHA 348 (369)
Q Consensus 314 L~~~lq~l~~a~~~Lk~n~-np~L~lE~lLlkL~~~ 348 (369)
+.++++.+.+.+..++++. +|...++..+++++..
T Consensus 297 l~~~l~~l~~~d~~~K~~~~d~~~~l~~~l~~~~~~ 332 (334)
T COG1466 297 LLKALRLLAQLDYQIKTGYGDPVWALELFLLRLLEL 332 (334)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC
T ss_conf 999999999999998457766006899999998542
No 64
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=99.77 E-value=9.9e-19 Score=158.30 Aligned_cols=182 Identities=26% Similarity=0.403 Sum_probs=132.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHH---HHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 928489999999999828767062010787988889999999---99614687778866587899977999977987782
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIA---RSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV 77 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A---~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~ 77 (369)
||||+.+++.|-.=+.+-==-| .|++||||+||||.||..= |.++.+--..+. .|
T Consensus 157 iVGQerAI~aLlaK~aSPfPQH-iiLYGPPGVGKTTaARl~LEe~K~~~~tPF~~DA---------------------~F 214 (616)
T TIGR02903 157 IVGQERAIKALLAKLASPFPQH-IILYGPPGVGKTTAARLALEEAKKLKNTPFAEDA---------------------PF 214 (616)
T ss_pred CCCHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCC---------------------CE
T ss_conf 3334689999997631888660-7855733884789999987621368744761137---------------------85
Q ss_pred CCCCCCC---------C---CCHHH------HHHHHHHH--------HHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHH
Q ss_conf 2245332---------2---33455------56655544--------565420465237751156648001678999997
Q 537021.9.peg.4 78 VELDAAS---------H---TSIDD------VREIIDQI--------YYKPISARFRVYIMDEVQMLSTAAFNGLLKTLE 131 (369)
Q Consensus 78 ~e~~~~s---------~---~~id~------ir~l~~~~--------~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lE 131 (369)
+|+||+. | .+|-| =|+|-|.= .--.+.| |.+|||.--|-.==||.|||.||
T Consensus 215 vEVDGtTLRWDPREvTNPLLGSVHDPIYQGa~RDLAE~GvPEPk~GLVT~AHGG---vLFIDEIGELD~lLQnKLLKVLE 291 (616)
T TIGR02903 215 VEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKLGLVTDAHGG---VLFIDEIGELDPLLQNKLLKVLE 291 (616)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCC---EEEEECHHHHHHHHHHHHHHHHC
T ss_conf 751576266774101477677625765567640110478798989871004775---67650211222787632444322
Q ss_pred HCCCC--------------------------CCEEE---EECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 21221--------------------------11466---50675433035675433321024540013567876431013
Q 537021.9.peg.4 132 EPPPH--------------------------VKFIF---ATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQEES 182 (369)
Q Consensus 132 EPp~~--------------------------~~fil---~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~ 182 (369)
.---. .=||| +|.+|+.|-|++||||.=+.|.||++++|..-..+-+++=|
T Consensus 292 DKrV~F~SsYYDpdD~NvPkYIK~lFe~GAPADFvLIGATTr~P~eINpALRSRCaEvfFePL~p~dI~~Iv~~AA~kln 371 (616)
T TIGR02903 292 DKRVEFSSSYYDPDDENVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIKEIVLNAAEKLN 371 (616)
T ss_pred CCEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCHHHCCHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 64366532124875378655888852268882568726615882440512330143132179887899999999888617
Q ss_pred CCCCHHHHHHHHHCC-CCCCCHHHHCCC
Q ss_conf 456256644565316-764200110001
Q 537021.9.peg.4 183 IEFDPEAVAMIARAS-DGSARDGLSLLD 209 (369)
Q Consensus 183 i~~d~~~l~~ia~~s-~GslR~Al~lLe 209 (369)
+.+.++.-.+||++. +| |+|+++|=
T Consensus 372 v~L~~gV~e~Ia~YTieG--RkAvnILA 397 (616)
T TIGR02903 372 VKLAEGVEELIARYTIEG--RKAVNILA 397 (616)
T ss_pred CCCCCCHHHHHHHCCCCC--HHHHHHHH
T ss_conf 700036487872147131--12223465
No 65
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.76 E-value=8.4e-18 Score=151.48 Aligned_cols=179 Identities=25% Similarity=0.306 Sum_probs=139.7
Q ss_pred CCCHHHHHHHHHHHHHCCC-----CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 9284899999999998287-----67062010787988889999999996146877788665878999779999779877
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGR-----IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHV 75 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~-----~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~ 75 (369)
.|||+++++.|+-+++..+ +.| .||+||||.||||+|.++|+.++..-....+|..+
T Consensus 27 fiGQ~~i~~~L~v~i~Aak~r~e~ldH-~Ll~GPPGlGKTTLA~iiA~E~~~~~~~tsGP~le----------------- 88 (328)
T PRK00080 27 FIGQEKVKENLKIFIEAAKKRGEALDH-VLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE----------------- 88 (328)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCCC-----------------
T ss_conf 359599999999999999964999880-57658899889999999999868881562450016-----------------
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCC------------------C
Q ss_conf 8222453322334555665554456542046523775115664800167899999721221------------------1
Q 537021.9.peg.4 76 DVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPH------------------V 137 (369)
Q Consensus 76 d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~------------------~ 137 (369)
+..++-.+..++ ...-|++|||.|+|++...-.|.-.||..--. -
T Consensus 89 -----------k~~DL~~iLt~l------~~~dvLFIDEIHRl~~~vEE~LY~AMEDf~iDi~iG~g~~Ar~~~i~L~pF 151 (328)
T PRK00080 89 -----------KAGDLAALLTNL------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPF 151 (328)
T ss_pred -----------CHHHHHHHHHHC------CCCCEEEEHHHHHCCHHHHHHHHHHHHHCEEEEEECCCCCCEEEECCCCCE
T ss_conf -----------747899999608------878767650653248889988579877523457864786532455589983
Q ss_pred CEEEEECCCCCCCHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCH
Q ss_conf 146650675433035675433-32102454001356787643101345625664456531676420011000111000
Q 537021.9.peg.4 138 KFIFATTEIRKIPITVLSRCQ-RFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIAR 214 (369)
Q Consensus 138 ~fil~t~~~~~ll~TI~SRcq-~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~ 214 (369)
.+|-+||....|..+.|+|.- +++|...+.+++.+.+.+.+..-+++++++++..||+.|.|.+|-|..+|.++.-|
T Consensus 152 TLIGATTr~g~Ls~PLrdRFGi~~~l~~Y~~eeL~~Ii~rsa~~l~i~i~~~~~~eIA~rSRGTPRiAnrLLrRvrDf 229 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGIEIDEEGALEIARRSRGTPRIANRLLRRVRDF 229 (328)
T ss_pred EEEECCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 474013676657767897579336634589999999999999983988789999999986389839999999999999
No 66
>PRK04132 replication factor C small subunit; Provisional
Probab=99.74 E-value=2e-18 Score=156.03 Aligned_cols=133 Identities=29% Similarity=0.449 Sum_probs=111.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
||||+|||+.|++.|+.+-+|| +||+||||+||||.|.++|+.|..++... +++|+
T Consensus 27 IVgQehIVkRLK~YVk~~smPH-LLFaGPPGvGKt~~al~lar~l~ge~wr~-----------------------nflel 82 (863)
T PRK04132 27 IVGQDHIVKRLKHYVKTGSMPH-LLFAGPPGVGKTTAALALARELFGENWRH-----------------------NFLEL 82 (863)
T ss_pred HCCHHHHHHHHHHHHCCCCCCC-EEECCCCCCCCHHHHHHHHHHHHCCHHHH-----------------------HHHHH
T ss_conf 2274999999998862388854-43048998771447888888761431455-----------------------56641
Q ss_pred CCCCCCCHHHHHHHHHHH-HHHHH-CCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 533223345556655544-56542-046523775115664800167899999721221114665067543303567543
Q 537021.9.peg.4 81 DAASHTSIDDVREIIDQI-YYKPI-SARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRC 157 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~~~-~~~p~-~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRc 157 (369)
+|....+++.+|+..+.+ ..+|. .+++|++.+||.+.++.+++|++..++|+....+.||+-|..-..=+.|=..|-
T Consensus 83 nas~~~~~~~~~~~v~~~~~~~p~~~~~~k~~~~de~~~l~~d~~~~~r~~~e~~~~~~~~~~~~~t~~~ki~t~~~re 161 (863)
T PRK04132 83 NASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCLTGDAKIYTPDERE 161 (863)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCE
T ss_conf 4421236348888777506866457865424644365640101157787667774212444333134651266035645
No 67
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=99.69 E-value=1.4e-16 Score=142.37 Aligned_cols=174 Identities=25% Similarity=0.296 Sum_probs=132.0
Q ss_pred CCHHHHHHHHHHHHH-----CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf 284899999999998-----287670620107879888899999999961468777886658789997799997798778
Q 537021.9.peg.4 2 IGQKPMIKTLTNAFK-----SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVD 76 (369)
Q Consensus 2 iGq~~~~~~l~~~~~-----~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d 76 (369)
|||+++++.|+=+|+ +..+-| .||+||||.||||+|++.|..++-.-....+|..+
T Consensus 7 iGQ~~vk~~L~l~I~AAk~R~e~LDH-~LL~GPPGLGKTTLA~IiA~Emg~~l~iTsGP~L~------------------ 67 (305)
T TIGR00635 7 IGQEKVKEQLQLFIEAAKMRQEALDH-LLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALE------------------ 67 (305)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCC------------------
T ss_conf 58288999999999999824897341-66317568746789999999838932674067554------------------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC----------CC--------CC
Q ss_conf 2224533223345556655544565420465237751156648001678999997212----------21--------11
Q 537021.9.peg.4 77 VVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP----------PH--------VK 138 (369)
Q Consensus 77 ~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp----------~~--------~~ 138 (369)
.-.||..=+.-- .+|+ |.+|||.|+|++.+=--|=--||.+- .. -.
T Consensus 68 -------------kPgDlaaiLt~L-~~gD--VLFIDEIHRL~p~~EE~LYpAMEDF~lDi~IG~Gp~Ar~v~ldLpPFT 131 (305)
T TIGR00635 68 -------------KPGDLAAILTNL-EEGD--VLFIDEIHRLSPAIEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFT 131 (305)
T ss_pred -------------CHHHHHHHHHHC-CCCC--EEECCHHHHCCHHHHHHCCCCCCCEEEEEEEECCCCCCEEEECCCCCC
T ss_conf -------------757899999705-6896--310125650483345310530012178778712898525760686944
Q ss_pred EEEEECCCCCCCHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCC
Q ss_conf 4665067543303567543-33210245400135678764310134562566445653167642001100011
Q 537021.9.peg.4 139 FIFATTEIRKIPITVLSRC-QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQ 210 (369)
Q Consensus 139 fil~t~~~~~ll~TI~SRc-q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq 210 (369)
+|-+||.+.+|-.+.+||- -..+|.--+++|+.+-+++-+..=+++++++++..||+.|.|-+|-|..+|=+
T Consensus 132 LvGATTR~G~lt~PLrdRFG~~~rl~fY~~~EL~~Iv~R~A~~L~~ei~~~~a~~IArrSRGTPRIAnRLLRR 204 (305)
T TIGR00635 132 LVGATTRAGMLTSPLRDRFGIILRLEFYTPEELAEIVSRSAGLLNIEIEQEAALEIARRSRGTPRIANRLLRR 204 (305)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 2000034774103133454474540268987899998753344143007789999987547863788877676
No 68
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=99.61 E-value=1.1e-15 Score=135.81 Aligned_cols=76 Identities=29% Similarity=0.406 Sum_probs=67.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 2233455566555445654204652377511566480016789999972122111466506754330356754333210
Q 537021.9.peg.4 84 SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDL 162 (369)
Q Consensus 84 s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f 162 (369)
...+||+.|++++.+..+.. ..||+|+ .|+.||.+|||||||+|||||.+|+|||+|.+++.++|||+||-...+.
T Consensus 34 ~Ef~ie~Akevi~eayIae~--~~k~ii~-~A~~~n~~a~NaLLK~lEEPp~~~~fili~~~~~~lLpTI~SRl~i~~~ 109 (204)
T PRK08485 34 DDFKIEDAKEVIAEAYIAES--EEKIIVI-AAPSYGIEAQNALLKILEEPPKNIKFIIVAKSKNLLLPTIRSRLIIEDR 109 (204)
T ss_pred CCCCHHHHHHHHHHHHHCCC--CCEEEEE-EHHHHCHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 21345779999999866036--8629997-1575269999999987417998807999868877747899988999977
No 69
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.57 E-value=6.2e-14 Score=122.93 Aligned_cols=175 Identities=29% Similarity=0.319 Sum_probs=131.6
Q ss_pred CCHHHHHHHHHHHHH-----CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf 284899999999998-----287670620107879888899999999961468777886658789997799997798778
Q 537021.9.peg.4 2 IGQKPMIKTLTNAFK-----SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVD 76 (369)
Q Consensus 2 iGq~~~~~~l~~~~~-----~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d 76 (369)
|||+++++.|+=+++ ...+-| .||+||||.||||+|.+.|..++-.-....+|..+
T Consensus 29 iGQ~~vk~~L~ifI~AAk~r~e~lDH-vLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le------------------ 89 (332)
T COG2255 29 IGQEKVKEQLQIFIKAAKKRGEALDH-VLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE------------------ 89 (332)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCCC------------------
T ss_conf 18399999999999999844987674-78647998768889999999856773763662015------------------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCC------------------CC
Q ss_conf 222453322334555665554456542046523775115664800167899999721221------------------11
Q 537021.9.peg.4 77 VVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPH------------------VK 138 (369)
Q Consensus 77 ~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~------------------~~ 138 (369)
+--++-.++.+ + ...-|.+|||.|+|+...---|--.||.+--. -.
T Consensus 90 ----------K~gDlaaiLt~--L----e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 90 ----------KPGDLAAILTN--L----EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred ----------CHHHHHHHHHC--C----CCCCEEEEEHHHHCCHHHHHHHHHHHHHEEEEEEECCCCCCCEEECCCCCEE
T ss_conf ----------72659999863--9----8677677725531474289896467531057789724875534763799813
Q ss_pred EEEEECCCCCCCHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCC
Q ss_conf 4665067543303567543-332102454001356787643101345625664456531676420011000111
Q 537021.9.peg.4 139 FIFATTEIRKIPITVLSRC-QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQA 211 (369)
Q Consensus 139 fil~t~~~~~ll~TI~SRc-q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~ 211 (369)
+|-+||....|..+.|.|. ...++.-.+++++...+.+-+..-++++++++...||+.|.|-+|-|..+|-++
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred EEEECCCCCCCCCHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 75101346645633688628604540588899999999888873877685799999986369938999999999
No 70
>CHL00181 cbbX CbbX; Provisional
Probab=99.56 E-value=1.5e-14 Score=127.46 Aligned_cols=164 Identities=22% Similarity=0.333 Sum_probs=115.1
Q ss_pred CCCHHHHHHHHHH---HHHCC-----------CC-CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
Q ss_conf 9284899999999---99828-----------76-706201078798888999999999614687778866587899977
Q 537021.9.peg.4 1 MIGQKPMIKTLTN---AFKSG-----------RI-AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEH 65 (369)
Q Consensus 1 iiGq~~~~~~l~~---~~~~~-----------~~-~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~ 65 (369)
+||.+.+++.++. .++-+ .. .| ++|.||||+||||+||++|+.|. .- |-.
T Consensus 25 liGL~~VK~~v~~l~~~~~~~~~R~~~Gl~~~~~s~h-~vF~GnPGTGKTTVARl~a~il~-~l-----------G~L-- 89 (287)
T CHL00181 25 LIGLVPVKTRIREIAALLLVDRLRKNLGLVSSSPGLH-MSFTGSPGTGKTTVALKMADILY-RL-----------GYI-- 89 (287)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE-EEEECCCCCCHHHHHHHHHHHHH-HC-----------CCC--
T ss_conf 4696999999999999999999999879998887653-88878998679999999999999-86-----------995--
Q ss_pred HHHHHCCCCCCCCCCCCCCC----CC--HHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC---------CCHHHHHHHHH
Q ss_conf 99997798778222453322----33--45556655544565420465237751156648---------00167899999
Q 537021.9.peg.4 66 CQAIIRGNHVDVVELDAASH----TS--IDDVREIIDQIYYKPISARFRVYIMDEVQMLS---------TAAFNGLLKTL 130 (369)
Q Consensus 66 c~~i~~~~~~d~~e~~~~s~----~~--id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~---------~~a~NaLLK~l 130 (369)
+..+++|.+.+.= +| ....+++++. +.-.|.+||||+.|. .+|-+.|+|.|
T Consensus 90 -------~~g~vve~~r~dLvg~yvG~Ta~kt~~~i~~-------a~GGVLfIDEAY~L~~~~~~~dfg~eaidtLl~~m 155 (287)
T CHL00181 90 -------KKGHLITVTRDDLVGQYIGHTAPKTKEVLKK-------AMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVM 155 (287)
T ss_pred -------CCCEEEEECHHHHCCCCCCCCHHHHHHHHHH-------CCCCEEEEECHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf -------5895899535884163535216999999996-------45987998244653578899983799999999998
Q ss_pred HHCCCCCCEEEEECC--CCCCC---HHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 721221114665067--54330---35675433-32102454001356787643101345625664456
Q 537021.9.peg.4 131 EEPPPHVKFIFATTE--IRKIP---ITVLSRCQ-RFDLHRISIGDLIELFTKILQEESIEFDPEAVAMI 193 (369)
Q Consensus 131 EEPp~~~~fil~t~~--~~~ll---~TI~SRcq-~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~i 193 (369)
|.+....++|++.-. -+.++ |-++||-- .+.|...+++++.+.+...+.+.++.+++++...+
T Consensus 156 e~~~~~lvvI~AGY~~eM~~fl~~NpGL~sRf~~~i~F~dYt~~EL~~I~~~~~~~~~~~l~~~a~~~l 224 (287)
T CHL00181 156 ENQRDDLVVIFAGYKDRMDKFYESNPGLSSRVANHVDFPDYTPEELLQIAKMMLEEQQYQLTPEAEKVL 224 (287)
T ss_pred HHCCCCEEEEEECCHHHHHHHHHHCCCHHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 707998899984678999999985904787688723779859999999999999986982587999999
No 71
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.53 E-value=1.7e-13 Score=119.74 Aligned_cols=218 Identities=19% Similarity=0.237 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC--CCCCCC
Q ss_conf 999999999982876706201078798888999999999614687778866587899977999977987782--224533
Q 537021.9.peg.4 6 PMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV--VELDAA 83 (369)
Q Consensus 6 ~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~--~e~~~~ 83 (369)
.+...|+.++..++-++ .+++||||+|||++++.+.+.+.-...... .+.--|....+-..+...-.-.+ ..+ +.
T Consensus 41 ~l~~~l~~~l~g~~~~n-~~I~G~pGTGKT~~vk~v~~~l~~~~~~~~-~vyINc~~~~t~~~i~~~i~~~L~~~~~-p~ 117 (394)
T PRK00411 41 ELAFALRPALRGSRPSN-VLILGPPGTGKTTTVKKVFEELEEAALKVV-YVYINCQIDRTRYAILSEIARSLFGHPP-PS 117 (394)
T ss_pred HHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHHHHHCCCCE-EEEEECCCCCCHHHHHHHHHHHHCCCCC-CC
T ss_conf 99999999975999984-799889999899999999999997468965-9999696689899999999999569989-87
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC-CCHHHHH---HHHHHH-CCCCCCEEEEECC---CCCCCHHHHH
Q ss_conf 223345556655544565420465237751156648-0016789---999972-1221114665067---5433035675
Q 537021.9.peg.4 84 SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS-TAAFNGL---LKTLEE-PPPHVKFIFATTE---IRKIPITVLS 155 (369)
Q Consensus 84 s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~-~~a~NaL---LK~lEE-Pp~~~~fil~t~~---~~~ll~TI~S 155 (369)
...+.+++.+.+. .+-...+++=|+|+||+|.+- .++++-| ++.-|+ |..++..|.++++ ++++.|-++|
T Consensus 118 ~G~s~~~~~~~l~--~~l~~~~~~~ivvLDEiD~L~~~~~~~vLY~L~r~~~~~~~~~~~vI~IsN~~~~~~~Ldprv~S 195 (394)
T PRK00411 118 SGLSFDELFDKIA--EYLDERDRVLIVALDDINYLVEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKS 195 (394)
T ss_pred CCCCHHHHHHHHH--HHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHC
T ss_conf 7878999999999--98616697589999655402036650899999854022688738999997687177664077750
Q ss_pred HHH--HHHCCCCCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHCCC---CCCCHHHHCCCCCCCHHH----CCCCHHH
Q ss_conf 433--3210245400135678764310---134562566445653167---642001100011100000----0121032
Q 537021.9.peg.4 156 RCQ--RFDLHRISIGDLIELFTKILQE---ESIEFDPEAVAMIARASD---GSARDGLSLLDQAIARCN----DKIVTSS 223 (369)
Q Consensus 156 Rcq--~~~f~~l~~~~i~~~L~~i~~~---E~i~~d~~~l~~ia~~s~---GslR~Al~lLeq~i~~~~----~~i~~e~ 223 (369)
|++ .+.|.|-+.+|+.+-|..-++. +| -+++++++++|..+. |++|+|+.+|-++.-.++ +.++.++
T Consensus 196 ~l~~~~i~F~PY~~~qL~~IL~~R~~~af~~g-v~~~~~i~~~A~~~a~~~GDaR~Aldllr~A~e~Ae~~g~~~Vt~~h 274 (394)
T PRK00411 196 VFGPEEIVFPPYTADEIFDILKDRVEEGFYPG-VVSDEVLELIADLTGREHGDARVAIDLLRRAGEIAEREGSRKVTEED 274 (394)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 27862898589998999999999998414556-78978999999998550475899999999999999971899658999
Q ss_pred HHHCCC
Q ss_conf 200013
Q 537021.9.peg.4 224 VRLMLA 229 (369)
Q Consensus 224 v~~llg 229 (369)
|.....
T Consensus 275 V~~A~~ 280 (394)
T PRK00411 275 VRKAYE 280 (394)
T ss_pred HHHHHH
T ss_conf 999999
No 72
>KOG1969 consensus
Probab=99.53 E-value=1.8e-13 Score=119.46 Aligned_cols=168 Identities=22% Similarity=0.312 Sum_probs=133.4
Q ss_pred EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 06201078798888999999999614687778866587899977999977987782224533223345556655544565
Q 537021.9.peg.4 22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYK 101 (369)
Q Consensus 22 ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~ 101 (369)
.-+|++||||.||||+|++.|+.- | . -|+||+|........+++-++.+-+.
T Consensus 327 KilLL~GppGlGKTTLAHViAkqa---------------G-----------Y--sVvEINASDeRt~~~v~~kI~~avq~ 378 (877)
T KOG1969 327 KILLLCGPPGLGKTTLAHVIAKQA---------------G-----------Y--SVVEINASDERTAPMVKEKIENAVQN 378 (877)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHC---------------C-----------C--EEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 068753688787247999999862---------------8-----------5--48873255543478899999998864
Q ss_pred -H---HCCCCCEEEEECHHHCCCCHHHHHHHHHH--H----CCCC--------------C-CEEEEECCCC-CCCHHHHH
Q ss_conf -4---20465237751156648001678999997--2----1221--------------1-1466506754-33035675
Q 537021.9.peg.4 102 -P---ISARFRVYIMDEVQMLSTAAFNGLLKTLE--E----PPPH--------------V-KFIFATTEIR-KIPITVLS 155 (369)
Q Consensus 102 -p---~~~~~kv~iid~a~~m~~~a~NaLLK~lE--E----Pp~~--------------~-~fil~t~~~~-~ll~TI~S 155 (369)
+ ..++.+-.||||.|.=-..|-+++|+.++ + .++. + -+|-+|++.. -=|-.++-
T Consensus 379 ~s~l~adsrP~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~ 458 (877)
T KOG1969 379 HSVLDADSRPVCLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRP 458 (877)
T ss_pred CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCHHHHHCCC
T ss_conf 11225688863599842468728999999999974161421686632034555304654587789864755533331021
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCC
Q ss_conf 433321024540013567876431013456256644565316764200110001110000001
Q 537021.9.peg.4 156 RCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDK 218 (369)
Q Consensus 156 Rcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~ 218 (369)
=|+.+.|+++++..++++|..||..||+..+..+|..+..++++++|-.+|.| |.++...+.
T Consensus 459 ~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~DIRsCINtL-QfLa~~~~r 520 (877)
T KOG1969 459 FAEIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQNDIRSCINTL-QFLASNVDR 520 (877)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHH-HHHHHHCCC
T ss_conf 04899956997668999999997641577887899999998613098888899-999970444
No 73
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=99.51 E-value=5.6e-13 Score=115.90 Aligned_cols=197 Identities=15% Similarity=0.200 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC-C
Q ss_conf 999999999982876706201078798888999999999614687778866587899977999977987782224533-2
Q 537021.9.peg.4 6 PMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA-S 84 (369)
Q Consensus 6 ~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~-s 84 (369)
.|.+-|+..+...+-.+-+|++||+|+||||+.+.+|+.|.|+--.+..|... -+.-..|+ ..|+...... +
T Consensus 30 eV~~WL~~~~~~~~~~~iLlLtGPaG~GKTTTI~lLAkeLG~ei~EW~NP~~~-~~~~~~~q------~~d~~g~~~~~~ 102 (490)
T pfam03215 30 EVDHWLKAVFLESNKQLILLLTGPSGCGKSTTVKVLSKELGIEIIEWSNPEYL-HNPDNECQ------KPDFRGDCIVNS 102 (490)
T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCC-CCCCCHHH------CCCCCCCCCCCC
T ss_conf 99999999854777731899879899889999999999759689981486545-67750221------012123457666
Q ss_pred CCCHHHHHHHHHHH-HH---HHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC-----CCCCCEEEEE-------CCCC-
Q ss_conf 23345556655544-56---542046523775115664800167899999721-----2211146650-------6754-
Q 537021.9.peg.4 85 HTSIDDVREIIDQI-YY---KPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP-----PPHVKFIFAT-------TEIR- 147 (369)
Q Consensus 85 ~~~id~ir~l~~~~-~~---~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP-----p~~~~fil~t-------~~~~- 147 (369)
....++-.+..... .| .....+.||++|||.-.+.....-+|...|-+. +..++||+.= ++..
T Consensus 103 ~S~~~~F~eFLlr~~ky~sL~~~~~~kriILIEE~Pn~~~~d~~~fr~~L~~~L~s~~~~PlV~IiSEt~s~~g~~~~~~ 182 (490)
T pfam03215 103 LSQMEQFREFLLRGARYGSLQGGGLKKKLILVEELPNQFYSDAEKFREVIREVLQSIWHLPLIFCLTECNSLEGDNNQDR 182 (490)
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCC
T ss_conf 63777767887622335654457887359999658874423669999999999970899987999970466667764332
Q ss_pred -------CCCHHHHHHHH--HHHCCCCCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHCCCCCCCHHHHCCC
Q ss_conf -------33035675433--32102454001356787643101345---6256644565316764200110001
Q 537021.9.peg.4 148 -------KIPITVLSRCQ--RFDLHRISIGDLIELFTKILQEESIE---FDPEAVAMIARASDGSARDGLSLLD 209 (369)
Q Consensus 148 -------~ll~TI~SRcq--~~~f~~l~~~~i~~~L~~i~~~E~i~---~d~~~l~~ia~~s~GslR~Al~lLe 209 (369)
-+.|.|+--|. ++.|.|+.+..|.+.|..|+.+|+.. .....++.|++.|+|++|-|++-|+
T Consensus 183 ~~~ta~rLlg~eIl~hp~i~~I~FNpIApT~M~KaL~~I~~kE~~~~~~~~~~~le~Ia~~S~GDIRsAInsLQ 256 (490)
T pfam03215 183 FGIDAETIMTKDILIMPRIDTITFNPIAPTFMKKALVRISVQEGKLKSPKSDSKLEVICQEAGGDLRSAINSLQ 256 (490)
T ss_pred CCCHHHHHCCHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 32107863598887088963698688878899999999999857655675203899999864872999999999
No 74
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=99.48 E-value=6.8e-13 Score=115.25 Aligned_cols=102 Identities=27% Similarity=0.374 Sum_probs=91.6
Q ss_pred CCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEEC------------CCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 52377511566480016789999972122111466506------------754330356754333210245400135678
Q 537021.9.peg.4 107 FRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATT------------EIRKIPITVLSRCQRFDLHRISIGDLIELF 174 (369)
Q Consensus 107 ~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~------------~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L 174 (369)
+=|.+|||+|||..+++--|=|.||.+-.. ++||+|| .|+-+|.-.+.||.+++-.|.+.++|.+.|
T Consensus 276 pGVLFIDEvHMLDiEcFsfLnralEs~laP-ivI~ATNRG~~~IRGTd~~sPHGiP~DlLDRllII~T~py~~~ei~~Ii 354 (395)
T pfam06068 276 PGVLFIDEVHMLDIECFSFLNRALESELAP-IVILATNRGICTIRGTDIISPHGIPLDLLDRLLIITTEPYTREEIKQIL 354 (395)
T ss_pred CCCEEEECCHHCCHHHHHHHHHHHCCCCCC-EEEEEECCCCEEECCCCCCCCCCCCHHHHHHEEEEECCCCCHHHHHHHH
T ss_conf 274688500000058998887765056787-6999844652035256775888998777730258856889989999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHCC-CCCCCHHHHCCC
Q ss_conf 76431013456256644565316-764200110001
Q 537021.9.peg.4 175 TKILQEESIEFDPEAVAMIARAS-DGSARDGLSLLD 209 (369)
Q Consensus 175 ~~i~~~E~i~~d~~~l~~ia~~s-~GslR~Al~lLe 209 (369)
+--++.|+++++++++++++..+ +-|+|-|++++.
T Consensus 355 ~iRa~~E~v~l~~~al~~L~~ig~~~SLRYaiqLlt 390 (395)
T pfam06068 355 EIRAQEEGVEISEEALDLLAKIGEETSLRYAIQLLT 390 (395)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHC
T ss_conf 987776078779899999998653202999998725
No 75
>TIGR01128 holA DNA polymerase III, delta subunit; InterPro: IPR005790 DNA polymerase III delta (holA, ) and delta prime (holB) subunits are distinct proteins encoded by separate genes. The delta prime subunit (holB) exhibits sequence homology to the tau and gamma subunits (dnaX), but the delta subunit (holA) does not demonstrate this same homology with dnaX. The delta, delta prime, gamma, chi and psi subunits form the gamma complex sub-assembly of DNA polymerase III holoenzyme, which couples ATP to assemble the ring-shaped beta subunit around DNA forming a DNA sliding clamp. Both delta and delta prime are monomeric in their native state, and they bind each other tightly to form a 1:1 complex. Neither delta nor delta prime alone binds tightly to the gamma subunit . ; GO: 0003677 DNA binding, 0003891 delta DNA polymerase activity, 0006260 DNA replication, 0043625 delta DNA polymerase complex.
Probab=99.39 E-value=1.8e-10 Score=97.29 Aligned_cols=299 Identities=18% Similarity=0.233 Sum_probs=240.8
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 70620107879888899999999961468777886658789997799997798778222453322334555665554456
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYY 100 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~ 100 (369)
+..|+++|+.-.-....+..+.+... ..... . ++..+++ .--+.-.+.....-
T Consensus 2 ~~~y~~~G~~~~l~~~~~~~~~~~~~-~~~~~-~---------------------~~~~~~~----~~~~~~~~~~~~~~ 54 (331)
T TIGR01128 2 APVYLLYGDEPLLLEEAADAIRAAAL-PGFDE-F---------------------NLFTIDG----EEFDWGQLLESAQT 54 (331)
T ss_pred CCCEEECCCCHHHHHHHHHHHHHHHC-CCCHH-H---------------------HHHHCCC----CCCHHHHHHHHHHH
T ss_conf 64035406405578999999998740-24201-2---------------------2321033----20037788877641
Q ss_pred HHHCCCCCEEEEECHHHC-CCCH-----HHHHHHHHHHCCCCCCEEEEEC--CCC------CCCH-HHHH-HHHHHHCCC
Q ss_conf 542046523775115664-8001-----6789999972122111466506--754------3303-5675-433321024
Q 537021.9.peg.4 101 KPISARFRVYIMDEVQML-STAA-----FNGLLKTLEEPPPHVKFIFATT--EIR------KIPI-TVLS-RCQRFDLHR 164 (369)
Q Consensus 101 ~p~~~~~kv~iid~a~~m-~~~a-----~NaLLK~lEEPp~~~~fil~t~--~~~------~ll~-TI~S-Rcq~~~f~~ 164 (369)
.|..+.++++++..+... +... ..+|.+.++.||+.++.++.+. ..+ +... +... ....+.+.+
T Consensus 55 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (331)
T TIGR01128 55 LPLFSERRLVELRLPSGLPGAKGKLEHLLKALLEYLANPPPDTLLLIEAPYEKLDKRKKLTKWLKKALDNKNAEIVECKT 134 (331)
T ss_pred CCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEECCC
T ss_conf 35544440566533334344100256679999987314676537887416301345677776766654321012310234
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHH-CC-CCHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 5400135678764310134562566445653167642001100011100000-01-210322000135677777888876
Q 537021.9.peg.4 165 ISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCN-DK-IVTSSVRLMLALADRNRIMDLFGY 242 (369)
Q Consensus 165 l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~-~~-i~~e~v~~llg~~~~~~i~~Ll~a 242 (369)
+...++..|....+...|..++.++..+++...+|+.+.+-..++++..+.. .. ++.+++...++...+..++++.++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~kl~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~a 214 (331)
T TIGR01128 135 PDEQELPRWIQARLKELGLRIDPDAVQLLAELVEGNLLALAQELEKLALLAPDGEPITLEDVEEAVSDSARFNVFDLTDA 214 (331)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 43556689999999970786545899999987253078888777777752378766688999988533114667889998
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC----------CCCC-CCHHHHHHHHHHHHHCCH
Q ss_conf 30136334678876543047621357877753489999997457412----------2344-998899999999862998
Q 537021.9.peg.4 243 LIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMA----------DTLL-YSEAENARALQYSKEVSI 311 (369)
Q Consensus 243 i~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~----------~~~~-~~~~e~~~i~~~a~~i~~ 311 (369)
+..++...+...+..+...|.+|..++..+...+|.+...+...... .... +++.....+....++++.
T Consensus 215 ~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (331)
T TIGR01128 215 LLEGKAARALRILDGLLGEGEEPLILLALLQRQLRLLLQLKILAQAGLTGKPLAQLASKLGPIWPYRRKLALKALRRLSL 294 (331)
T ss_pred HHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCH
T ss_conf 86043899999999887404115789999999999999988877630022108899987336550356778999850577
Q ss_pred HHHHHHHHHHHHHHHHHH-CC-CCHHHHHHHHHHHHH
Q ss_conf 999999999999999830-27-888999999999995
Q 537021.9.peg.4 312 TFLSRFWQMILKGISEIE-GF-SRPMEAVEMVLIRLA 346 (369)
Q Consensus 312 ~~L~~~lq~l~~a~~~Lk-~n-~np~L~lE~lLlkL~ 346 (369)
..+.+.++.+.+++..++ .+ .++...+|.++++++
T Consensus 295 ~~l~~~~~~l~~~~~~~k~~~~~~~~~~l~~l~~~~~ 331 (331)
T TIGR01128 295 AKLEQALQELAEADLQLKGTGLGDPWLELELLLLKLA 331 (331)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
T ss_conf 8899999999998998502456525789999876309
No 76
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.35 E-value=1.1e-11 Score=106.22 Aligned_cols=131 Identities=28% Similarity=0.348 Sum_probs=91.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
Q ss_conf 28489999999999828767062010787988889999999996146877788665878999779999779877822245
Q 537021.9.peg.4 2 IGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELD 81 (369)
Q Consensus 2 iGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~ 81 (369)
.||+.....+...+......| +||+||||+|||++|+.+|+.+..... .+++++
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~-ill~GppGtGKT~la~~ia~~~~~~~~-------------------------~~~~~~ 54 (151)
T cd00009 1 VGQEEAIEALREALELPPPKN-LLLYGPPGTGKTTLARAIANELFRPGA-------------------------PFLYLN 54 (151)
T ss_pred CCCHHHHHHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCC-------------------------CEEEEE
T ss_conf 985799999999981879980-899899998865999999997121379-------------------------827854
Q ss_pred CCCCCC---HHHHHH--HHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC------CCCCEEEEECCCC--C
Q ss_conf 332233---455566--55544565420465237751156648001678999997212------2111466506754--3
Q 537021.9.peg.4 82 AASHTS---IDDVRE--IIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP------PHVKFIFATTEIR--K 148 (369)
Q Consensus 82 ~~s~~~---id~ir~--l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp------~~~~fil~t~~~~--~ 148 (369)
..+-.+ ++..+. ...........+++.|++|||+|.|+...++.+++.+++.. .++.+|++|+.+. .
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~l~~~~~~~~~~~~~~vI~~tn~~~~~~ 134 (151)
T cd00009 55 ASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGD 134 (151)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCC
T ss_conf 77704677775760577889899999976998698201665599999999999987157540678889999528998868
Q ss_pred CCHHHHHHHH
Q ss_conf 3035675433
Q 537021.9.peg.4 149 IPITVLSRCQ 158 (369)
Q Consensus 149 ll~TI~SRcq 158 (369)
+.+.+.+||.
T Consensus 135 ~~~~~~~R~~ 144 (151)
T cd00009 135 LDRALYDRLD 144 (151)
T ss_pred HHHHHHCCCC
T ss_conf 3776425598
No 77
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.34 E-value=2.2e-11 Score=104.15 Aligned_cols=203 Identities=18% Similarity=0.179 Sum_probs=134.8
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CHHHHHHHCCCCCCCCCCC
Q ss_conf 848999999999982876706201078798888999999999614687778866587899-9779999779877822245
Q 537021.9.peg.4 3 GQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGF-GEHCQAIIRGNHVDVVELD 81 (369)
Q Consensus 3 Gq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~-c~~c~~i~~~~~~d~~e~~ 81 (369)
+|+.+...|.-.+..++ +- -+++|++|+||||+.|.|++.|......... ...+..+ -+-.+.|...= -++
T Consensus 27 ~h~~al~~L~~~l~~~~-g~-~lltGe~GtGKTtllr~l~~~l~~~~~~~~~-i~~~~l~~~~ll~~i~~~l-----g~~ 98 (269)
T TIGR03015 27 GHKRAMAYLEYGLSQRE-GF-ILITGEVGAGKTTLIRNLLKRLDQERVVAAK-LVNTRVDAEDLLRMVAADF-----GLE 98 (269)
T ss_pred HHHHHHHHHHHHHHCCC-CE-EEEECCCCCCHHHHHHHHHHHCCCCCEEEEE-ECCCCCCHHHHHHHHHHHC-----CCC
T ss_conf 69999999999996489-65-9997299898899999999845934548999-7699999999999999985-----989
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHH--HHHCCCCCCEEEEECCCC---CC----CHH
Q ss_conf 332233455566555445654204652377511566480016789999--972122111466506754---33----035
Q 537021.9.peg.4 82 AASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKT--LEEPPPHVKFIFATTEIR---KI----PIT 152 (369)
Q Consensus 82 ~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~--lEEPp~~~~fil~t~~~~---~l----l~T 152 (369)
..+..+.+-.|.+.+.+.-.-..|+.-|+||||||.|+.++-+.|.-. +|-...+.+.++.+-+|+ +| ++.
T Consensus 99 ~~~~~~~~~~~~l~~~L~~~~~~g~~~vliIDEAq~L~~~~Le~Lr~L~n~e~~~~~ll~iiL~GqpeL~~~L~~~~~~~ 178 (269)
T TIGR03015 99 TEGRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQ 178 (269)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHCCCCHHH
T ss_conf 88989999999999999999966994699972422199999999999970135888704899957867999872740254
Q ss_pred HHHHH-HHHHCCCCCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHCCCCCCCHHHHCCCCCCC
Q ss_conf 67543-33210245400135678764310134----562566445653167642001100011100
Q 537021.9.peg.4 153 VLSRC-QRFDLHRISIGDLIELFTKILQEESI----EFDPEAVAMIARASDGSARDGLSLLDQAIA 213 (369)
Q Consensus 153 I~SRc-q~~~f~~l~~~~i~~~L~~i~~~E~i----~~d~~~l~~ia~~s~GslR~Al~lLeq~i~ 213 (369)
+.+|- .++.+.|++.++...|+..-+..-|. -+++++++.|.+.|+|.+|.--.+-++++.
T Consensus 179 l~qRI~~~~~L~pl~~eet~~YI~~RL~~AG~~~~~~Ft~~A~~~I~~~S~G~PR~IN~Lc~~aLl 244 (269)
T TIGR03015 179 LRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLL 244 (269)
T ss_pred HHHCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 555076799847999899999999999866999999859999999999869900899999999999
No 78
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.29 E-value=1.4e-11 Score=105.56 Aligned_cols=184 Identities=20% Similarity=0.280 Sum_probs=126.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC----
Q ss_conf 9284899999999998287670620107879888899999999961468777886658789997799997798778----
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVD---- 76 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d---- 76 (369)
|||-+.=++.+-..+.+.+=++ -++.|+||+|||+++..||+.+. .|.-|+
T Consensus 180 vIGRd~EI~r~i~IL~RR~KNN-piLvGepGVGKTAIvEGLA~rI~------------------------~g~VP~~L~~ 234 (857)
T PRK10865 180 VIGRDEEIRRTIQVLQRRTKNN-PVLIGEPGVGKTAIVEGLAQRII------------------------NGEVPEGLKG 234 (857)
T ss_pred CCCCHHHHHHHHHHHHCCCCCC-CEEECCCCCCHHHHHHHHHHHHH------------------------CCCCCHHHCC
T ss_conf 8582999999999970257899-75878999889999999999998------------------------3899978816
Q ss_pred --CCCCC------CCCCCC-H-HHHHHHHHHHHHHHHCCCCCEEEEECHHHC--------CCCHHHHHHHHHHHCCCCCC
Q ss_conf --22245------332233-4-555665554456542046523775115664--------80016789999972122111
Q 537021.9.peg.4 77 --VVELD------AASHTS-I-DDVREIIDQIYYKPISARFRVYIMDEVQML--------STAAFNGLLKTLEEPPPHVK 138 (369)
Q Consensus 77 --~~e~~------~~s~~~-i-d~ir~l~~~~~~~p~~~~~kv~iid~a~~m--------~~~a~NaLLK~lEEPp~~~~ 138 (369)
++.+| |++-.| . +.++.+++.+...+ +.-|.+|||+|++ +.+|+|-|--.|-. ....
T Consensus 235 ~~I~~LDlg~L~AGakyRGeFEeRLk~il~ev~~~~---~~iILFIDEiHtlvGaG~~~G~~DaaNlLKPaLaR--Gelr 309 (857)
T PRK10865 235 RRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQE---GNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELH 309 (857)
T ss_pred CCEEEEEHHHHHHCCCCCHHHHHHHHHHHHHHHHCC---CCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHHC--CCCE
T ss_conf 902473388786147652117999999999998478---98699973435433688777753478886788737--9854
Q ss_pred EEEEECCC--CCCCH---HHHHHHHHHHCCCCCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHCCCC------CCCH
Q ss_conf 46650675--43303---5675433321024540013567876431----01345625664456531676------4200
Q 537021.9.peg.4 139 FIFATTEI--RKIPI---TVLSRCQRFDLHRISIGDLIELFTKILQ----EESIEFDPEAVAMIARASDG------SARD 203 (369)
Q Consensus 139 fil~t~~~--~~ll~---TI~SRcq~~~f~~l~~~~i~~~L~~i~~----~E~i~~d~~~l~~ia~~s~G------slR~ 203 (369)
+|-+||.- .+.++ .+--|.|.+....++.++....|+.+.. .+++.|+++++...+.+|.= =+.+
T Consensus 310 ~IGATT~~EYrk~iEkD~AL~RRFq~V~V~EPs~e~ti~ILrgl~~~yE~hH~V~itdeAl~aAV~LS~RYI~dR~LPDK 389 (857)
T PRK10865 310 CVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDK 389 (857)
T ss_pred EEEECCHHHHHHHCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf 99945899999871345889985371006899879999999988889987379158799999999986245666678148
Q ss_pred HHHCCCCCCCH
Q ss_conf 11000111000
Q 537021.9.peg.4 204 GLSLLDQAIAR 214 (369)
Q Consensus 204 Al~lLeq~i~~ 214 (369)
|+.+||.+.+.
T Consensus 390 AIDLLDeA~A~ 400 (857)
T PRK10865 390 AIDLIDEAASS 400 (857)
T ss_pred HHHHHHHHHHH
T ss_conf 98899999888
No 79
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=99.29 E-value=5.3e-12 Score=108.67 Aligned_cols=154 Identities=23% Similarity=0.402 Sum_probs=106.5
Q ss_pred CE-EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC--HHHH-HHHHH
Q ss_conf 70-62010787988889999999996146877788665878999779999779877822245332233--4555-66555
Q 537021.9.peg.4 21 AQ-SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTS--IDDV-REIID 96 (369)
Q Consensus 21 ~h-a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~--id~i-r~l~~ 96 (369)
+. -+-|+||||+||||+|+-.|+|||-.-- +|+=|.--|+-||-| |+. |--+ =.++.
T Consensus 449 GpqIlClvGPPGVGKTSlg~SIA~ALnRkFv-----------------R~SlGG~~DeAEIrG--HRRTYvGAMPGriiQ 509 (941)
T TIGR00763 449 GPQILCLVGPPGVGKTSLGKSIAKALNRKFV-----------------RFSLGGVRDEAEIRG--HRRTYVGAMPGRIIQ 509 (941)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCEEE-----------------EEEECCCEEHHHCCC--CCCCCCCCCHHHHHH
T ss_conf 8767872072695422278999999688049-----------------995267220311278--643203467257899
Q ss_pred HHHHHHHCCCCCEEEEECHHHCC--CCH----HHHHHHHHHHCCCC----------------CC--EEEEECCCCCCCHH
Q ss_conf 44565420465237751156648--001----67899999721221----------------11--46650675433035
Q 537021.9.peg.4 97 QIYYKPISARFRVYIMDEVQMLS--TAA----FNGLLKTLEEPPPH----------------VK--FIFATTEIRKIPIT 152 (369)
Q Consensus 97 ~~~~~p~~~~~kv~iid~a~~m~--~~a----~NaLLK~lEEPp~~----------------~~--fil~t~~~~~ll~T 152 (369)
-+....+.-+ ||+|||.|+|. .+- |-|||=.|. |-.| |+ ||.++|+.+.||++
T Consensus 510 ~lk~~~t~NP--l~LlDEIDK~~~~~~~~GDPaSALLEvLD-PEQN~~F~DHYldvp~DLS~V~CyFi~TAN~~d~IP~P 586 (941)
T TIGR00763 510 GLKKAKTKNP--LILLDEIDKIGLKSSFRGDPASALLEVLD-PEQNNAFSDHYLDVPFDLSKVLCYFIATANSIDTIPRP 586 (941)
T ss_pred HHHHCCCCCC--EEEEEEEEEECCCCCCCCCHHHHHHHHCC-HHHCCCCCCCCCCCCCCHHHHHHHEEECCCCCCCCCCC
T ss_conf 9876041588--06862022001678865563788864128-64360425530023400420021000244757677722
Q ss_pred HHHHHHHHHCCCCCCHH---H-HHHHH-HH-----HHHCCCCCCHHHHHHHHHC
Q ss_conf 67543332102454001---3-56787-64-----3101345625664456531
Q 537021.9.peg.4 153 VLSRCQRFDLHRISIGD---L-IELFT-KI-----LQEESIEFDPEAVAMIARA 196 (369)
Q Consensus 153 I~SRcq~~~f~~l~~~~---i-~~~L~-~i-----~~~E~i~~d~~~l~~ia~~ 196 (369)
++=|.=+|.+.--+++| | .+||- +. +..++++++++++..|++.
T Consensus 587 LLDRMEvI~lsGY~~~EK~~IA~~yLiP~~~~~~GL~~~~l~~~d~al~~lI~~ 640 (941)
T TIGR00763 587 LLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKISDEALLLLIKY 640 (941)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCEEECHHHHHHHHHH
T ss_conf 137402452388876789999985471367987088813221268999999987
No 80
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.28 E-value=3.6e-11 Score=102.57 Aligned_cols=172 Identities=20% Similarity=0.320 Sum_probs=118.9
Q ss_pred CCCHHHHHHH---HHHHHH----CCC-CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf 9284899999---999998----287-67062010787988889999999996146877788665878999779999779
Q 537021.9.peg.4 1 MIGQKPMIKT---LTNAFK----SGR-IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRG 72 (369)
Q Consensus 1 iiGq~~~~~~---l~~~~~----~~~-~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~ 72 (369)
||||+.+++. +.+.++ -|. .|...||+||+|+|||.+|+++|...+. |.. ..++-..| |
T Consensus 123 ViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv-------p~l----~vkat~li--G 189 (368)
T COG1223 123 VIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV-------PLL----LVKATELI--G 189 (368)
T ss_pred HHCHHHHHHHHHHHHHHHHCHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC-------CEE----EECHHHHH--H
T ss_conf 4163988888799999964968763457541687789996487999987254578-------548----71168888--8
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC------------CCHHHHHHHHHHH--CCCCCC
Q ss_conf 87782224533223345556655544565420465237751156648------------0016789999972--122111
Q 537021.9.peg.4 73 NHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS------------TAAFNGLLKTLEE--PPPHVK 138 (369)
Q Consensus 73 ~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~------------~~a~NaLLK~lEE--Pp~~~~ 138 (369)
-|. =| +-.+||++-+.++... .-|++|||.|.+- .+.-||||--|.- --.+|+
T Consensus 190 ehV----Gd-----gar~Ihely~rA~~~a----PcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 190 EHV----GD-----GARRIHELYERARKAA----PCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred HHH----HH-----HHHHHHHHHHHHHHCC----CEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 774----35-----9899999999887519----8499840024555304578864549999999998501744577569
Q ss_pred EEEEECCCCCCCHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
Q ss_conf 46650675433035675433-32102454001356787643101345625664456531676
Q 537021.9.peg.4 139 FIFATTEIRKIPITVLSRCQ-RFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDG 199 (369)
Q Consensus 139 fil~t~~~~~ll~TI~SRcq-~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~G 199 (369)
+|-+|++|+-|=|.||||.- -+.|+-++.++....|+..+++=-++++.. ++.++..+.|
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g 317 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKG 317 (368)
T ss_pred EEEECCCHHHCCHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHCC
T ss_conf 995059846507888865565065648885899999999898589765568-9999998478
No 81
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.28 E-value=1.1e-11 Score=106.21 Aligned_cols=183 Identities=23% Similarity=0.298 Sum_probs=120.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC----
Q ss_conf 9284899999999998287670620107879888899999999961468777886658789997799997798778----
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVD---- 76 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d---- 76 (369)
|||-+.=++.+...+.+.+=.+ -++.|.||+|||+++..+|+.+. .|.-|+
T Consensus 189 vIGRd~EI~r~iqIL~Rr~KNN-PiLVGepGVGKTAIvEGLA~rI~------------------------~g~VP~~L~~ 243 (852)
T TIGR03345 189 VLGRDDEIRQMIDILLRRRQNN-PILTGEAGVGKTAVVEGLALRIA------------------------AGDVPPALRN 243 (852)
T ss_pred CCCCHHHHHHHHHHHHHHCCCC-CEEECCCCCCHHHHHHHHHHHHH------------------------CCCCCHHHHC
T ss_conf 8694999999999998624799-74657999879999999999997------------------------6999867743
Q ss_pred --CCCCC------CCCCCC-HH-HHHHHHHHHHHHHHCCCCCEEEEECHHHC--------CCCHHHHHHHHHHHCCCCCC
Q ss_conf --22245------332233-45-55665554456542046523775115664--------80016789999972122111
Q 537021.9.peg.4 77 --VVELD------AASHTS-ID-DVREIIDQIYYKPISARFRVYIMDEVQML--------STAAFNGLLKTLEEPPPHVK 138 (369)
Q Consensus 77 --~~e~~------~~s~~~-id-~ir~l~~~~~~~p~~~~~kv~iid~a~~m--------~~~a~NaLLK~lEEPp~~~~ 138 (369)
++.+| |++-.| .+ .++.+++.+.-.+ +.=|.+|||.|++ +.+|+|-|=-.|-. ....
T Consensus 244 ~~i~sLDlg~LvAGtkyRGeFEeRlk~ii~ei~~~~---~~iILFIDEiHtlvGAG~~~G~~DaaNiLKPaLar--Gelr 318 (852)
T TIGR03345 244 VRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASP---QPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELR 318 (852)
T ss_pred CEEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHCC---CCEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHC--CCCE
T ss_conf 856786788886403576359999999999998489---97699963487752899888862278875178737--8734
Q ss_pred EEEEECCCC--CCC---HHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHCCCCCC------CH
Q ss_conf 466506754--330---35675433321024540013567876431----0134562566445653167642------00
Q 537021.9.peg.4 139 FIFATTEIR--KIP---ITVLSRCQRFDLHRISIGDLIELFTKILQ----EESIEFDPEAVAMIARASDGSA------RD 203 (369)
Q Consensus 139 fil~t~~~~--~ll---~TI~SRcq~~~f~~l~~~~i~~~L~~i~~----~E~i~~d~~~l~~ia~~s~Gsl------R~ 203 (369)
+|-+||.-+ +.+ +.+-=|.|.+....++.++...-|+.+.. .+++.|+++++...+.+|+-=+ .+
T Consensus 319 ~IGATT~~EYrk~iEkD~AL~RRFq~V~V~EPs~eeti~IL~glk~~yE~hH~V~i~d~Ai~aAv~LS~RYI~dR~LPDK 398 (852)
T TIGR03345 319 TIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDK 398 (852)
T ss_pred EEEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 99835789998886426889962475527999879999999987999855479687089999999998721554558427
Q ss_pred HHHCCCCCCC
Q ss_conf 1100011100
Q 537021.9.peg.4 204 GLSLLDQAIA 213 (369)
Q Consensus 204 Al~lLeq~i~ 213 (369)
|+.++|.+-+
T Consensus 399 AIDLlDeA~A 408 (852)
T TIGR03345 399 AVSLLDTACA 408 (852)
T ss_pred HHHHHHHHHH
T ss_conf 8999999999
No 82
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.27 E-value=8.8e-11 Score=99.67 Aligned_cols=118 Identities=27% Similarity=0.360 Sum_probs=96.5
Q ss_pred CCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEEC------------CCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 52377511566480016789999972122111466506------------754330356754333210245400135678
Q 537021.9.peg.4 107 FRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATT------------EIRKIPITVLSRCQRFDLHRISIGDLIELF 174 (369)
Q Consensus 107 ~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~------------~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L 174 (369)
.-|.+|||+|||-.++|--|-|.||++=.. +.||+|| .|+-+|.-..-|-.++.-+|.+.++|...+
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse~aP-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi 370 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESELAP-IIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREII 370 (450)
T ss_pred CCEEEEECHHHHHHHHHHHHHHHHHCCCCC-EEEEECCCCEEEECCCCCCCCCCCCHHHHHHEEEEECCCCCHHHHHHHH
T ss_conf 342897321345578999999876314675-7999717750012166776888898766622567744779889999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHCC-CCCCCHHHHCCCCC--CCH--HHCCCCHHHHH
Q ss_conf 76431013456256644565316-76420011000111--000--00012103220
Q 537021.9.peg.4 175 TKILQEESIEFDPEAVAMIARAS-DGSARDGLSLLDQA--IAR--CNDKIVTSSVR 225 (369)
Q Consensus 175 ~~i~~~E~i~~d~~~l~~ia~~s-~GslR~Al~lLeq~--i~~--~~~~i~~e~v~ 225 (369)
+--+..|++.++++|++.++..+ .-|+|-|+++|.-+ ++. .+..+..++|.
T Consensus 371 ~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe 426 (450)
T COG1224 371 RIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVE 426 (450)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHCCCEEEHHHHH
T ss_conf 97643540304888999997515034489999861688899987179746566799
No 83
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.26 E-value=2.8e-11 Score=103.35 Aligned_cols=182 Identities=24% Similarity=0.315 Sum_probs=121.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC----
Q ss_conf 9284899999999998287670620107879888899999999961468777886658789997799997798778----
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVD---- 76 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d---- 76 (369)
|||-+.=++.+-..+.+.+-.+ -++.|+||+|||+++.-||+.+- .|.-|+
T Consensus 181 vIGRd~EI~r~i~IL~RR~KNN-piLvGepGVGKTAIvEGLA~rI~------------------------~g~VP~~L~~ 235 (823)
T CHL00095 181 VIGRDKEIERVIQILGRRTKNN-PILIGEPGVGKTAIAEGLAQRIA------------------------NRDVPDILED 235 (823)
T ss_pred CCCCHHHHHHHHHHHHHHCCCC-CEEECCCCCCHHHHHHHHHHHHH------------------------CCCCCHHHCC
T ss_conf 7595699999999997732488-50237999879999999999760------------------------8899868759
Q ss_pred --CCCCC------CCCCCC-H-HHHHHHHHHHHHHHHCCCCCEEEEECHHHC--------CCCHHHHHHHHHHHCCCCCC
Q ss_conf --22245------332233-4-555665554456542046523775115664--------80016789999972122111
Q 537021.9.peg.4 77 --VVELD------AASHTS-I-DDVREIIDQIYYKPISARFRVYIMDEVQML--------STAAFNGLLKTLEEPPPHVK 138 (369)
Q Consensus 77 --~~e~~------~~s~~~-i-d~ir~l~~~~~~~p~~~~~kv~iid~a~~m--------~~~a~NaLLK~lEEPp~~~~ 138 (369)
++.+| |++..| . +-++.+++.+.-. +.-|.+|||+|++ +.+|+|-|--.|-. ....
T Consensus 236 ~~i~sLDl~~L~AGtkyRGeFEeRlk~il~ei~~~----~~iILFIDEiHtlvGaG~~~g~~DaaNlLKPaLar--Gel~ 309 (823)
T CHL00095 236 KLVLTLDIGLLLAGTKYRGEFEERIKKIMDEIKKA----NNIILVIDEIHTLIGAGAAEGAIDAANILKPALAR--GKLQ 309 (823)
T ss_pred CCEEEEEHHHHHHCCCCCHHHHHHHHHHHHHHHHC----CCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHC--CCCE
T ss_conf 93688428877533422267999999999999857----98699973516532889766643178876578648--9866
Q ss_pred EEEEECCC--CCCC---HHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHCCCCC------CCH
Q ss_conf 46650675--4330---35675433321024540013567876431----013456256644565316764------200
Q 537021.9.peg.4 139 FIFATTEI--RKIP---ITVLSRCQRFDLHRISIGDLIELFTKILQ----EESIEFDPEAVAMIARASDGS------ARD 203 (369)
Q Consensus 139 fil~t~~~--~~ll---~TI~SRcq~~~f~~l~~~~i~~~L~~i~~----~E~i~~d~~~l~~ia~~s~Gs------lR~ 203 (369)
+|-+||.- .+.+ +.+--|.|.+....++.++....|..+.. .+++.|+++++...+.+|.== +.+
T Consensus 310 ~IGATT~~EYrk~iEkD~AL~RRFq~V~V~EPs~e~t~~IL~gl~~~yE~~H~V~i~d~Ai~aav~LS~RYi~dr~LPDK 389 (823)
T CHL00095 310 CIGATTLEEYRKHIEKDPALERRFQPVYVGEPSVEETIEILLGLRDRYEKHHNLSISDKALEAAAKLSDQYIKDRFLPDK 389 (823)
T ss_pred EEEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 99707889999985305889962684102899879999999999999987508850478999999987764037778217
Q ss_pred HHHCCCCCCC
Q ss_conf 1100011100
Q 537021.9.peg.4 204 GLSLLDQAIA 213 (369)
Q Consensus 204 Al~lLeq~i~ 213 (369)
|+.++|.+-+
T Consensus 390 AIDllDeA~A 399 (823)
T CHL00095 390 AIDLLDEAGS 399 (823)
T ss_pred HHHHHHHHHH
T ss_conf 8888999989
No 84
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=99.24 E-value=3.2e-11 Score=102.89 Aligned_cols=111 Identities=27% Similarity=0.360 Sum_probs=73.2
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 20107879888899999999961468777886658789997799997798778222453322334555665554456542
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPI 103 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~ 103 (369)
.||+||||+|||++|+++|+.+++.--..+ |. .+. +.+ + + -+...++++.+.+..
T Consensus 1 iLl~GppGtGKT~~a~~la~~~~~~~~~v~------~~------~~~-~~~-----~---g-~~~~~i~~~f~~a~~--- 55 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEIS------GS------ELV-SKY-----V---G-ESEKRLRELFEAAKK--- 55 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHHCCCCEECC------CC------CCC-CCC-----C---C-HHHHHHHHHHHHHHH---
T ss_conf 987899999999999999999789853324------20------122-233-----4---5-068889999999997---
Q ss_pred CCCCCEEEEECHHHCCC-----------CHHHHHHHHHHH---CCCCCCEEEEECCCCCCCHHHH-HHHHHH
Q ss_conf 04652377511566480-----------016789999972---1221114665067543303567-543332
Q 537021.9.peg.4 104 SARFRVYIMDEVQMLST-----------AAFNGLLKTLEE---PPPHVKFIFATTEIRKIPITVL-SRCQRF 160 (369)
Q Consensus 104 ~~~~kv~iid~a~~m~~-----------~a~NaLLK~lEE---Pp~~~~fil~t~~~~~ll~TI~-SRcq~~ 160 (369)
....|++|||+|.+.. ...+.||..|+. +..+++||.+|++|+++.|.++ |||...
T Consensus 56 -~~p~Il~iDe~d~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~~I~tTN~~~~ld~al~r~Rfd~~ 126 (131)
T pfam00004 56 -LAPCVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSLSKVIVIAATNRPDKLDPALLRGRFDRI 126 (131)
T ss_pred -CCCCEEEECHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCHHHHCCCCEEE
T ss_conf -49918983116777516788888751326878999985022468876999975990449977962833289
No 85
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.22 E-value=3.4e-11 Score=102.68 Aligned_cols=184 Identities=21% Similarity=0.304 Sum_probs=124.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC----
Q ss_conf 9284899999999998287670620107879888899999999961468777886658789997799997798778----
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVD---- 76 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d---- 76 (369)
|||-+.=++.+...+.+.+=++ -++.|+||+|||.++..||+.+ ..|+-|+
T Consensus 175 viGRd~Ei~r~i~IL~Rr~KNN-piLVGepGVGKTAIvEGLA~rI------------------------~~g~VP~~L~~ 229 (852)
T TIGR03346 175 VIGRDEEIRRTIQVLSRRTKNN-PVLIGEPGVGKTAIVEGLAQRI------------------------VNGDVPESLKN 229 (852)
T ss_pred CCCCHHHHHHHHHHHHHHCCCC-CCEECCCCCCHHHHHHHHHHHH------------------------HCCCCCHHHHH
T ss_conf 7383699999999998732489-7212799987999999999998------------------------66999978851
Q ss_pred --CCCCC------CCCCCC-H-HHHHHHHHHHHHHHHCCCCCEEEEECHHHC--------CCCHHHHHHHHHHHCCCCCC
Q ss_conf --22245------332233-4-555665554456542046523775115664--------80016789999972122111
Q 537021.9.peg.4 77 --VVELD------AASHTS-I-DDVREIIDQIYYKPISARFRVYIMDEVQML--------STAAFNGLLKTLEEPPPHVK 138 (369)
Q Consensus 77 --~~e~~------~~s~~~-i-d~ir~l~~~~~~~p~~~~~kv~iid~a~~m--------~~~a~NaLLK~lEEPp~~~~ 138 (369)
++.+| |++-.| . +.++.+++.+.-.+ +.-|.+|||+|++ +.+|+|-|--.|-. ....
T Consensus 230 ~~i~~LDlg~LvAGtkyRGeFEeRlk~ii~ev~~~~---~~iILFIDEiHtliGaG~~~G~~DAaNlLKPaLar--Gelr 304 (852)
T TIGR03346 230 KRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSE---GQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR--GELH 304 (852)
T ss_pred CCCEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHCC---CCEEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHC--CCCE
T ss_conf 851275288775215300789999999999998589---98799961255532688766641067774378747--9855
Q ss_pred EEEEECCC--CCCC---HHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHCCCC------CCCH
Q ss_conf 46650675--4330---35675433321024540013567876431----01345625664456531676------4200
Q 537021.9.peg.4 139 FIFATTEI--RKIP---ITVLSRCQRFDLHRISIGDLIELFTKILQ----EESIEFDPEAVAMIARASDG------SARD 203 (369)
Q Consensus 139 fil~t~~~--~~ll---~TI~SRcq~~~f~~l~~~~i~~~L~~i~~----~E~i~~d~~~l~~ia~~s~G------slR~ 203 (369)
+|-+||.- .+.+ +.+--|.|.+....++.++....|+.+.. .+++.|+++++...+++|.- =+-+
T Consensus 305 ~IgATT~~EYrk~iEkD~AL~RRFq~I~V~EPs~e~t~~IL~gl~~~yE~hH~V~i~d~Ai~aav~LS~RYi~~R~LPDK 384 (852)
T TIGR03346 305 CIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDK 384 (852)
T ss_pred EEEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf 99827899999883226889973771204799868999999976999976279267399999999971346677889618
Q ss_pred HHHCCCCCCCH
Q ss_conf 11000111000
Q 537021.9.peg.4 204 GLSLLDQAIAR 214 (369)
Q Consensus 204 Al~lLeq~i~~ 214 (369)
|+.+||.+-+.
T Consensus 385 AIDlLDeA~a~ 395 (852)
T TIGR03346 385 AIDLIDEAAAR 395 (852)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998
No 86
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.20 E-value=1.1e-10 Score=98.91 Aligned_cols=182 Identities=19% Similarity=0.308 Sum_probs=123.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC----
Q ss_conf 9284899999999998287670620107879888899999999961468777886658789997799997798778----
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVD---- 76 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d---- 76 (369)
|||-+.=++.+...+.+.+=.. -++.|+||+|||.++.-||+.+. .|.-|+
T Consensus 188 viGR~~Ei~r~i~iL~Rr~KNN-piLvGepGVGKTAIvEGLA~rI~------------------------~g~VP~~L~~ 242 (758)
T PRK11034 188 LIGREKELERAIQVLCRRRKNN-PLLVGESGVGKTAIAEGLAWRIV------------------------QGDVPEVMAD 242 (758)
T ss_pred CCCCHHHHHHHHHHHHHHCCCC-CEEECCCCCCHHHHHHHHHHHHH------------------------CCCCCHHHCC
T ss_conf 7384899999999997632589-60216999869999999999997------------------------3899765589
Q ss_pred --CCCCC------CCCCCC-HH-HHHHHHHHHHHHHHCCCCCEEEEECHHHC---------CCCHHHHHHHHHHHCCCCC
Q ss_conf --22245------332233-45-55665554456542046523775115664---------8001678999997212211
Q 537021.9.peg.4 77 --VVELD------AASHTS-ID-DVREIIDQIYYKPISARFRVYIMDEVQML---------STAAFNGLLKTLEEPPPHV 137 (369)
Q Consensus 77 --~~e~~------~~s~~~-id-~ir~l~~~~~~~p~~~~~kv~iid~a~~m---------~~~a~NaLLK~lEEPp~~~ 137 (369)
++.+| |++-.| .+ .++.+++.+... +.-|.+|||+|++ +.+|+|-|--.|-. ...
T Consensus 243 ~~i~~Ldl~~LiAGtkyRGefEeRlk~vi~e~~~~----~~~ILFIDEiH~ivGaG~~~gg~~DaaNlLKP~Lar--G~l 316 (758)
T PRK11034 243 CTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQD----TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKI 316 (758)
T ss_pred CEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHC----CCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHC--CCC
T ss_conf 88998458778616864154999999999999857----985999804344226887677764678874578746--972
Q ss_pred CEEEEECC--CCCCC---HHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHCCCCC------CC
Q ss_conf 14665067--54330---35675433321024540013567876431----013456256644565316764------20
Q 537021.9.peg.4 138 KFIFATTE--IRKIP---ITVLSRCQRFDLHRISIGDLIELFTKILQ----EESIEFDPEAVAMIARASDGS------AR 202 (369)
Q Consensus 138 ~fil~t~~--~~~ll---~TI~SRcq~~~f~~l~~~~i~~~L~~i~~----~E~i~~d~~~l~~ia~~s~Gs------lR 202 (369)
.+|-+||. ..+.+ +.+--|.|.+....++.++....|..+.. .+++.|+++++...+++|.=- +.
T Consensus 317 ~~IgaTT~~EYrk~iekD~AL~RRFq~V~V~EPs~e~t~~IL~gl~~~yE~~H~v~~~d~al~~av~Ls~rYi~dr~lPD 396 (758)
T PRK11034 317 RVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPD 396 (758)
T ss_pred EEEEECCHHHHHHCCCCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHCCCCCCH
T ss_conf 39994377998750321478884282653189998999999998999873236957743899999999976502688961
Q ss_pred HHHHCCCCCCC
Q ss_conf 01100011100
Q 537021.9.peg.4 203 DGLSLLDQAIA 213 (369)
Q Consensus 203 ~Al~lLeq~i~ 213 (369)
+|+.++|.+-+
T Consensus 397 KAIdllDea~a 407 (758)
T PRK11034 397 KAIDVIDEAGA 407 (758)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999988
No 87
>KOG1970 consensus
Probab=99.20 E-value=4.5e-10 Score=94.41 Aligned_cols=195 Identities=15% Similarity=0.234 Sum_probs=116.8
Q ss_pred HHHHHHHHH-----CCCCCEE-EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC-
Q ss_conf 999999998-----2876706-201078798888999999999614687778866587899977999977987782224-
Q 537021.9.peg.4 8 IKTLTNAFK-----SGRIAQS-YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL- 80 (369)
Q Consensus 8 ~~~l~~~~~-----~~~~~ha-~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~- 80 (369)
+...+.++. ..+++|- +|++||.||||+|+.+.+|+.+..+-.++..|+. |- .-.. -|-+-...
T Consensus 91 I~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~--~~------~~~~-~h~~t~~~~ 161 (634)
T KOG1970 91 ISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPIN--LK------EPEN-LHNETSFLM 161 (634)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCC--CC------CCCC-CCCCCHHCC
T ss_conf 89999999999974536676079985798887131999999864802123047766--56------6555-455440013
Q ss_pred CCCCCCCHHHHHHHHHHH------HHH--HHCCCCCEEEEECH-HHCCCCHHHHHHHHHH----HCCCCCCEEEEECCC-
Q ss_conf 533223345556655544------565--42046523775115-6648001678999997----212211146650675-
Q 537021.9.peg.4 81 DAASHTSIDDVREIIDQI------YYK--PISARFRVYIMDEV-QMLSTAAFNGLLKTLE----EPPPHVKFIFATTEI- 146 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~~~------~~~--p~~~~~kv~iid~a-~~m~~~a~NaLLK~lE----EPp~~~~fil~t~~~- 146 (369)
++-. ...++.....+.. +.. -..++.|+++|||. +..-.++..+|.-.|. +|--.++||++-.+.
T Consensus 162 ~~~~-s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~ 240 (634)
T KOG1970 162 FPYQ-SQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSN 240 (634)
T ss_pred CCHH-HHHHHHHHHHHHHHHHCHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 3036-678999989999876231653133334675079850261444003699999999999845777679998635357
Q ss_pred -----CCC-CHH--HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHCCCCCCCHHHHCCCCCC
Q ss_conf -----433-035--6754333210245400135678764310134562------56644565316764200110001110
Q 537021.9.peg.4 147 -----RKI-PIT--VLSRCQRFDLHRISIGDLIELFTKILQEESIEFD------PEAVAMIARASDGSARDGLSLLDQAI 212 (369)
Q Consensus 147 -----~~l-l~T--I~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d------~~~l~~ia~~s~GslR~Al~lLeq~i 212 (369)
.++ +.- +.-|--++.|.|+.+.-|..+|..||..|+.... ...+..|+..++|++|-|++.| |..
T Consensus 241 g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~s~GDIRsAInsL-Qls 319 (634)
T KOG1970 241 GNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQGSGGDIRSAINSL-QLS 319 (634)
T ss_pred CCCCHHHHCHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH-HHH
T ss_conf 8763434242656533585247615776799999999999986266666767506799999875277399998775-332
Q ss_pred C
Q ss_conf 0
Q 537021.9.peg.4 213 A 213 (369)
Q Consensus 213 ~ 213 (369)
+
T Consensus 320 s 320 (634)
T KOG1970 320 S 320 (634)
T ss_pred C
T ss_conf 0
No 88
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=99.17 E-value=1.3e-09 Score=91.04 Aligned_cols=226 Identities=16% Similarity=0.230 Sum_probs=141.8
Q ss_pred HHHHHHHHC-CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCC-CCC---CCCCCHH--------HHHHHCCCCC
Q ss_conf 999999982-87670620107879888899999999961468777886-658---7899977--------9999779877
Q 537021.9.peg.4 9 KTLTNAFKS-GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVP-TVE---FEGFGEH--------CQAIIRGNHV 75 (369)
Q Consensus 9 ~~l~~~~~~-~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~-~~~---~c~~c~~--------c~~i~~~~~~ 75 (369)
..|+-++ + |.-|...+++|++|||||+.++.+.+.|.-.....+.. +.. -|..-++ |.++. ..+-
T Consensus 31 ~~L~~~l-~PG~~P~Ni~iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~~NC~~~~T~y~~~~~L~~~ln-~~~~ 108 (383)
T TIGR02928 31 KALRPIL-RPGSRPSNIFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVYINCQILDTSYQVLVELANQLN-RRGS 108 (383)
T ss_pred HHHHHHH-CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHC-CCCC
T ss_conf 9988750-6748987258878889878899999999999986226997158999778546846999999999851-5778
Q ss_pred CCCCCCCCCCCCH--HHH-HHHHHHHHHHHHCCCCCEEEEECHHHC---CCCH------HHHHHHH--HHHCC-CCCCEE
Q ss_conf 8222453322334--555-665554456542046523775115664---8001------6789999--97212-211146
Q 537021.9.peg.4 76 DVVELDAASHTSI--DDV-REIIDQIYYKPISARFRVYIMDEVQML---STAA------FNGLLKT--LEEPP-PHVKFI 140 (369)
Q Consensus 76 d~~e~~~~s~~~i--d~i-r~l~~~~~~~p~~~~~kv~iid~a~~m---~~~a------~NaLLK~--lEEPp-~~~~fi 140 (369)
+... .++|+ +++ +.|.+.+.+ ..++.=|||+||.|.| +.+- =-.|++. -++-. .++-.|
T Consensus 109 ~~~v----P~tG~s~~~~~~~l~~~l~~--~~~~~~~ivLDEiD~Lv~~~~d~PAyS~~LY~L~Ra~~~~~~~~~~vgvI 182 (383)
T TIGR02928 109 GEEV----PTTGLSTSEVFRELYKELNR--ERGDSLIIVLDEIDKLVRKDDDDPAYSKLLYQLSRARENGDLENAKVGVI 182 (383)
T ss_pred CCCC----CCCCCCHHHHHHHHHHHHHH--HCCCEEEEEECCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 8889----88778789999999999832--01887999862310221588888078788534331000357788534899
Q ss_pred EEECCC---CCCCHHHHHHHH--HHHCCCCCCHHHHHHHHHHH-H---HCCCCCCHHHHHHHHHCC---CCCCCHHHHCC
Q ss_conf 650675---433035675433--32102454001356787643-1---013456256644565316---76420011000
Q 537021.9.peg.4 141 FATTEI---RKIPITVLSRCQ--RFDLHRISIGDLIELFTKIL-Q---EESIEFDPEAVAMIARAS---DGSARDGLSLL 208 (369)
Q Consensus 141 l~t~~~---~~ll~TI~SRcq--~~~f~~l~~~~i~~~L~~i~-~---~E~i~~d~~~l~~ia~~s---~GslR~Al~lL 208 (369)
-++++. +.|=|=++|+-+ -+.|+|-..+|+.+-|++-. + .+|+ ++++++.+.|.+| .||.|+||-||
T Consensus 183 gISND~~f~~~Ld~RVkSsL~~eei~FpPYdA~eL~~IL~~R~v~~AF~dGv-l~d~VI~lcAA~aAq~hGDAR~AiDLL 261 (383)
T TIGR02928 183 GISNDLKFRENLDPRVKSSLCEEEIVFPPYDAEELRDILENRAVEKAFYDGV-LDDGVIPLCAALAAQEHGDARKAIDLL 261 (383)
T ss_pred EEECCCHHHHHCCCCEECCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 9865714364457530132487400407988699999997203120336885-462279999998620678789999999
Q ss_pred CCCCCH----HHCCCCHHHHHHCCCCC-CHHHHHHHHHHH
Q ss_conf 111000----00012103220001356-777778888763
Q 537021.9.peg.4 209 DQAIAR----CNDKIVTSSVRLMLALA-DRNRIMDLFGYL 243 (369)
Q Consensus 209 eq~i~~----~~~~i~~e~v~~llg~~-~~~~i~~Ll~ai 243 (369)
-.+--. +.+.++.++|.+--... -.+.+.+++.-+
T Consensus 262 R~AGe~A~~~g~~~Vt~~HV~~A~e~~PE~~r~~e~~~~L 301 (383)
T TIGR02928 262 RVAGEIAEREGAERVTEDHVEEAQEKIPEVDRVLELIRGL 301 (383)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCC
T ss_conf 9876875315763100888999998322288999986079
No 89
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.17 E-value=1.1e-09 Score=91.65 Aligned_cols=193 Identities=15% Similarity=0.169 Sum_probs=126.7
Q ss_pred CC-HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 28-48999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 2 IG-QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 2 iG-q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
+| .+.+...+.+.+....- ..+.++||+|+|||-++.+++........ .++.+
T Consensus 19 ~~~N~~~~~~l~~~~~~~~~-~~l~i~G~~GsGKTHLl~a~~~~~~~~~~-------------------------~~~yl 72 (226)
T TIGR03420 19 AGGNAELLAALRQLAAGKGD-RFLYLWGESGSGKSHLLQAACAAAEERGK-------------------------SAIYL 72 (226)
T ss_pred CCCHHHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHHHCCCC-------------------------CEEEE
T ss_conf 58679999999987646688-86999899999889999999999862699-------------------------57995
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC--CCHHHHHHHHHHHCC-CCCCEEEEECC-CCC---CCHHH
Q ss_conf 533223345556655544565420465237751156648--001678999997212-21114665067-543---30356
Q 537021.9.peg.4 81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS--TAAFNGLLKTLEEPP-PHVKFIFATTE-IRK---IPITV 153 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~--~~a~NaLLK~lEEPp-~~~~fil~t~~-~~~---ll~TI 153 (369)
+... -.+...+..+.+ -.+-+++||++|.+. ...+.+|..++-+-- .+..++++++. |.. .+|-+
T Consensus 73 ~~~~--~~~~~~~~l~~l------~~~d~l~iDDi~~i~~~~~~e~~lF~l~N~~~~~~~~ilits~~~p~~l~~~l~dL 144 (226)
T TIGR03420 73 PLAE--LAQADPEVLEGL------EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDL 144 (226)
T ss_pred CHHH--HHHHHHHHHHHC------CCCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHCCCCHHHH
T ss_conf 2999--877539999727------44899999663334378378999999999998652828986788823203201779
Q ss_pred HHH---HHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCH---HHCCCCHHHHHHC
Q ss_conf 754---3332102454001356787643101345625664456531676420011000111000---0001210322000
Q 537021.9.peg.4 154 LSR---CQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIAR---CNDKIVTSSVRLM 227 (369)
Q Consensus 154 ~SR---cq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~---~~~~i~~e~v~~l 227 (369)
+|| +..+.+.+++.+.....|.+.+...|+.+++++++.|++....|+|....+++++-.+ ...++|..-+.++
T Consensus 145 ~SRl~~~~~~~I~~pdd~~~~~iL~k~~~~r~i~i~~~vi~yl~~r~~R~~~~l~~~l~~Ld~~sl~~kr~ITi~l~kev 224 (226)
T TIGR03420 145 RTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFVKEV 224 (226)
T ss_pred HHHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 99996885685279999999999999999859988999999999863798999999999999999980899999999998
Q ss_pred C
Q ss_conf 1
Q 537021.9.peg.4 228 L 228 (369)
Q Consensus 228 l 228 (369)
+
T Consensus 225 L 225 (226)
T TIGR03420 225 L 225 (226)
T ss_pred H
T ss_conf 4
No 90
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.9e-10 Score=97.23 Aligned_cols=102 Identities=20% Similarity=0.245 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECHHHC-----C----CCHHHHHHHHHHHCCCCCCEEEEECCCC--CCC---HHHHHH
Q ss_conf 5665554456542046523775115664-----8----0016789999972122111466506754--330---356754
Q 537021.9.peg.4 91 VREIIDQIYYKPISARFRVYIMDEVQML-----S----TAAFNGLLKTLEEPPPHVKFIFATTEIR--KIP---ITVLSR 156 (369)
Q Consensus 91 ir~l~~~~~~~p~~~~~kv~iid~a~~m-----~----~~a~NaLLK~lEEPp~~~~fil~t~~~~--~ll---~TI~SR 156 (369)
++.+++.+...+ .-|.+|||+|++ + .+|+|-|--.|-. .....|-+||.-+ +.+ +..-=|
T Consensus 251 lk~vl~ev~~~~----~vILFIDEiHtiVGAG~~~g~a~DAaNiLKPaLAR--GeL~~IGATT~~EYRk~iEKD~AL~RR 324 (786)
T COG0542 251 LKAVLKEVEKSK----NVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR--GELRCIGATTLDEYRKYIEKDAALERR 324 (786)
T ss_pred HHHHHHHHHCCC----CEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHCHHHHHC
T ss_conf 999999985179----84999823554057776666651256646778745--873799735589998873306677846
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHCCC
Q ss_conf 33321024540013567876431----0134562566445653167
Q 537021.9.peg.4 157 CQRFDLHRISIGDLIELFTKILQ----EESIEFDPEAVAMIARASD 198 (369)
Q Consensus 157 cq~~~f~~l~~~~i~~~L~~i~~----~E~i~~d~~~l~~ia~~s~ 198 (369)
-|.+....++.++...-|+.+.. .+++.|.++++...+.+|.
T Consensus 325 FQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~ 370 (786)
T COG0542 325 FQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSD 370 (786)
T ss_pred CCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHH
T ss_conf 7510279989899999998778888770696433799999999998
No 91
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.11 E-value=1e-09 Score=91.83 Aligned_cols=172 Identities=19% Similarity=0.281 Sum_probs=105.6
Q ss_pred CCCHHHHHHHHHHHHHC-----------C-CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 92848999999999982-----------8-76706201078798888999999999614687778866587899977999
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKS-----------G-RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQA 68 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~-----------~-~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~ 68 (369)
|-|-+.+++.|+.+|.- | +.|-..||+||||||||.+|+++|..+.|.--.... ..
T Consensus 134 IGGl~~~k~el~E~velPl~~pe~f~~~Gi~pPkGvLLyGPPGtGKTllAkAvA~e~~~~fi~v~~------------s~ 201 (390)
T PRK03992 134 IGGLDEQIREVREAVELPLKNPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG------------SE 201 (390)
T ss_pred HCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEH------------HH
T ss_conf 149899999999999998659899997699999727868989997899999999874888799667------------99
Q ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCC-------C----HH---HHHHHHHH--H
Q ss_conf 9779877822245332233455566555445654204652377511566480-------0----16---78999997--2
Q 537021.9.peg.4 69 IIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLST-------A----AF---NGLLKTLE--E 132 (369)
Q Consensus 69 i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~-------~----a~---NaLLK~lE--E 132 (369)
+.+. ++ |. +-..+|++-+.+... ..-|++|||+|.+-. . .+ +.||--|+ +
T Consensus 202 l~sk------~v-Ge---sek~vr~lF~~Ar~~----aP~IiFiDEiDai~~~R~~~~~~g~~ev~r~l~qLL~emDG~~ 267 (390)
T PRK03992 202 LVQK------FI-GE---GARLVRELFELAREK----APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 267 (390)
T ss_pred HHHC------CC-CH---HHHHHHHHHHHHHHH----CCCEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 7524------54-17---999999999999970----9908971432566335677888620889999999999744877
Q ss_pred CCCCCCEEEEECCCCCCCHHHHH--HH-HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHCCCCC
Q ss_conf 12211146650675433035675--43-3321024540013567876431013456256-644565316764
Q 537021.9.peg.4 133 PPPHVKFIFATTEIRKIPITVLS--RC-QRFDLHRISIGDLIELFTKILQEESIEFDPE-AVAMIARASDGS 200 (369)
Q Consensus 133 Pp~~~~fil~t~~~~~ll~TI~S--Rc-q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~-~l~~ia~~s~Gs 200 (369)
+..++++|.+|+.|+.|-|.++= |. .++.|..++.+.-.+.|+-.+. ++..+++ .+..+|+.++|=
T Consensus 268 ~~~~V~VIaATNrpd~LDpAllRpGRFDr~I~iplPd~~~R~~Ilki~~~--~~~l~~dvdl~~lA~~T~G~ 337 (390)
T PRK03992 268 PRGNVKIIAATNRPDILDPALLRPGRFDRIIEVPLPDEEGRLEILKIHTR--KMNLADDVDLEELAELTEGA 337 (390)
T ss_pred CCCCEEEEEECCCCHHCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHCCCC
T ss_conf 77882799606981005977754776523887089499999999999847--99999888999999768799
No 92
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.11 E-value=5.3e-10 Score=93.89 Aligned_cols=112 Identities=27% Similarity=0.366 Sum_probs=73.1
Q ss_pred CCCHHHHHHHHHHHHHC------------CC--C-CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
Q ss_conf 92848999999999982------------87--6-706201078798888999999999614687778866587899977
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKS------------GR--I-AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEH 65 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~------------~~--~-~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~ 65 (369)
||||+++++.|.-++-+ +. + ....|+.||.|+|||.+|+.+|+.|+-.-...+.-+..
T Consensus 74 VIGQ~~AKk~lsVAvyNHykRi~~~~~~~~~vei~KsNILliGPTG~GKTlla~tLAk~l~vPF~iaDAT~lT------- 146 (411)
T PRK05342 74 VIGQERAKKVLSVAVYNHYKRLRQNGSKSDDVELQKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLT------- 146 (411)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECEEC-------
T ss_conf 0284888899999999999998602133566521345389989999778899999999869998998612001-------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHCCCCCEEEEECHHHCCCC--------------HHHHHHHHH
Q ss_conf 9999779877822245332233455-5665554456542046523775115664800--------------167899999
Q 537021.9.peg.4 66 CQAIIRGNHVDVVELDAASHTSIDD-VREIIDQIYYKPISARFRVYIMDEVQMLSTA--------------AFNGLLKTL 130 (369)
Q Consensus 66 c~~i~~~~~~d~~e~~~~s~~~id~-ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~--------------a~NaLLK~l 130 (369)
..|.. + --||. ++.|...+.+-...+.+=|+.|||.|++.+. -|.||||.+
T Consensus 147 ----EaGYV---------G-eDVE~ii~~Llq~Ad~dve~Ae~GIV~IDEIDKIarks~~~s~trDVSgEGVQqaLLkii 212 (411)
T PRK05342 147 ----EAGYV---------G-EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKIL 212 (411)
T ss_pred ----CCCCC---------C-CCHHHHHHHHHHHCCCCHHHHHCCEEEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf ----26745---------6-079999999999828889988368288850234542478888877765124899999987
Q ss_pred HHC
Q ss_conf 721
Q 537021.9.peg.4 131 EEP 133 (369)
Q Consensus 131 EEP 133 (369)
|.-
T Consensus 213 EGt 215 (411)
T PRK05342 213 EGT 215 (411)
T ss_pred CCC
T ss_conf 587
No 93
>CHL00176 ftsH cell division protein; Validated
Probab=99.09 E-value=6.5e-10 Score=93.26 Aligned_cols=177 Identities=20% Similarity=0.308 Sum_probs=111.8
Q ss_pred CCCHHHHHHHHHHHHH-----------CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 9284899999999998-----------28767062010787988889999999996146877788665878999779999
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFK-----------SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAI 69 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~-----------~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i 69 (369)
|.|++.+++.|...+. -.|+|...||+||||+|||.+|+++|..- + .|-..
T Consensus 179 VaG~~eaK~el~EivdfLk~P~k~~~~Gak~PkGvLL~GpPGTGKTlLAkAvAgEa----~---vpF~~----------- 240 (631)
T CHL00176 179 VAGVEEAKEELEEVVTFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----E---VPFFS----------- 240 (631)
T ss_pred CCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCC----C---CCEEE-----------
T ss_conf 28858999999999998359588764499689658988989987889999985655----8---84699-----------
Q ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC--------------CCHHHHHHHHHH--HC
Q ss_conf 77987782224533223345556655544565420465237751156648--------------001678999997--21
Q 537021.9.peg.4 70 IRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS--------------TAAFNGLLKTLE--EP 133 (369)
Q Consensus 70 ~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~--------------~~a~NaLLK~lE--EP 133 (369)
-+-.|+.|+-- -.|...||+|-+.+.... .-|++|||.|..- .+.-|.||--|. +.
T Consensus 241 --~sgs~F~e~~v--Gvga~rVR~LF~~Ar~~a----P~IiFIDEiDaig~~Rg~~~~gg~~e~e~tlnqLL~emDGf~~ 312 (631)
T CHL00176 241 --ISGSEFVEMFV--GVGAARVRDLFKKAKENS----PCIVFIDEIDAVGRQRGAGVGGGNDEREQTLNQLLTEMDGFEG 312 (631)
T ss_pred --EEHHHHHHHHC--CHHHHHHHHHHHHHHHCC----CEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf --88378556421--555899999999998639----9699987101201147898889850899999999998428887
Q ss_pred CCCCCEEEEECCCCCCCHHHHH--HH-HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHCCCCCCCHHH
Q ss_conf 2211146650675433035675--43-3321024540013567876431013456256-64456531676420011
Q 537021.9.peg.4 134 PPHVKFIFATTEIRKIPITVLS--RC-QRFDLHRISIGDLIELFTKILQEESIEFDPE-AVAMIARASDGSARDGL 205 (369)
Q Consensus 134 p~~~~fil~t~~~~~ll~TI~S--Rc-q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~-~l~~ia~~s~GslR~Al 205 (369)
.++++.|-+|+.|+.|=|.++= |- .++.+..++.+.-.+.|+..+.+ ..++++ .+..||+.+.|=-+..|
T Consensus 313 ~~gViViaATNrpd~LDpALlRPGRFDR~I~V~lPD~~gR~~IL~vh~k~--~~l~~dvdl~~iA~~T~GfSGAdL 386 (631)
T CHL00176 313 NKGVIVIAATNRIDILDAALLRPGRFDRQVTVSLPDFEGRLDILKVHARN--KKLAEDVSLELIARRTPGFSGADL 386 (631)
T ss_pred CCCEEEEEECCCCCCCCHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHCCCCCHHHH
T ss_conf 88869998258855456866268877549982698989999999999707--866653009999862699867888
No 94
>KOG1968 consensus
Probab=99.08 E-value=3.7e-10 Score=95.11 Aligned_cols=173 Identities=19% Similarity=0.231 Sum_probs=114.6
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 62010787988889999999996146877788665878999779999779877822245332233455566555445654
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKP 102 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p 102 (369)
|.+.+||+|+|||++|...|+.+...--..+. +.|++-+.... .+.++.+.-.|..-+ ..+-.-..
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Na------s~~RSk~~l~~------~~~~~~~s~si~~~~--~~~~~~~~ 424 (871)
T KOG1968 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNA------SDVRSKKELLN------KLGNATSSHSIKGSK--KKKGNRQS 424 (871)
T ss_pred HHHHCCCCCCCCHHHHHHHHHHCCCCEEECCC------CCCCCCCHHHH------HHHCCCCCCCHHHHH--CCCCCCCC
T ss_conf 88731788777205676630120654010475------43344227776------640244664000111--11133000
Q ss_pred HCCCCCEEEEECHHHCCC---CHHHHHHHHHHHCCCCCCEEEEECCCCCCCH-HHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 204652377511566480---0167899999721221114665067543303-567543332102454001356787643
Q 537021.9.peg.4 103 ISARFRVYIMDEVQMLST---AAFNGLLKTLEEPPPHVKFIFATTEIRKIPI-TVLSRCQRFDLHRISIGDLIELFTKIL 178 (369)
Q Consensus 103 ~~~~~kv~iid~a~~m~~---~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~-TI~SRcq~~~f~~l~~~~i~~~L~~i~ 178 (369)
..+.+-|+|+||+|-|.. ..+-+|-...++ ...-.|++|++.+-... ++-+=|.-++|+.++...+..++..|+
T Consensus 425 ~~~~~~vil~devD~~~~~dRg~v~~l~~l~~k--s~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~ 502 (871)
T KOG1968 425 LNSDHFLILMDEVDGMFGEDRGGVSKLSSLCKK--SSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSIC 502 (871)
T ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCCHHHHCCEEEECCCCHHHHHHHHHHHH
T ss_conf 466606999742554420001369999999986--357768873377776652022320023404885777776665330
Q ss_pred HHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCC
Q ss_conf 1013456256644565316764200110001110
Q 537021.9.peg.4 179 QEESIEFDPEAVAMIARASDGSARDGLSLLDQAI 212 (369)
Q Consensus 179 ~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i 212 (369)
..|++.++++.++-++..++|++|..++.| |.+
T Consensus 503 ~se~~ki~~~~l~~~s~~~~~DiR~~i~~l-q~~ 535 (871)
T KOG1968 503 KSEGIKISDDVLEEISKLSGGDIRQIIMQL-QFW 535 (871)
T ss_pred CCCCEECCCHHHHHHHHHCCCCHHHHHHHH-HHH
T ss_conf 246424172788999875064799999877-644
No 95
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.6e-09 Score=88.79 Aligned_cols=209 Identities=19% Similarity=0.232 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH----HHC--CCCCCCCC
Q ss_conf 999999999982876706201078798888999999999614687778866587899977999----977--98778222
Q 537021.9.peg.4 6 PMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQA----IIR--GNHVDVVE 79 (369)
Q Consensus 6 ~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~----i~~--~~~~d~~e 79 (369)
++...|..++..++ |+..+++||+|+|||.+++.+++.+.-.....+ .+---|-.-++-.+ +.. ++-|..-
T Consensus 28 ~l~~~l~~~~~~~~-p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~~~~~~p~~g- 104 (366)
T COG1474 28 QLASFLAPALRGER-PSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILNKLGKVPLTG- 104 (366)
T ss_pred HHHHHHHHHHCCCC-CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCC-EEEEEEEECCCHHHHHHHHHHHHCCCCCCC-
T ss_conf 99999999855899-860799889998732899999999973315675-799951307878799999999826899767-
Q ss_pred CCCCCCCCHHHH-HHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHH---HHHHHHCCCCCCEEEEECCC---CCCCHH
Q ss_conf 453322334555-66555445654204652377511566480016789---99997212211146650675---433035
Q 537021.9.peg.4 80 LDAASHTSIDDV-REIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGL---LKTLEEPPPHVKFIFATTEI---RKIPIT 152 (369)
Q Consensus 80 ~~~~s~~~id~i-r~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaL---LK~lEEPp~~~~fil~t~~~---~~ll~T 152 (369)
....++ ..+.+.+. ..++.=|+|+||+|.|-....+.| ++.-+++..++.+|.++++. +.+-|-
T Consensus 105 ------~~~~~~~~~l~~~~~---~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~r 175 (366)
T COG1474 105 ------DSSLEILKRLYDNLS---KKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPR 175 (366)
T ss_pred ------CCHHHHHHHHHHHHH---HCCCEEEEEECCHHHHHCCCCCHHHHEECCCCCCCEEEEEEEEECCHHHHHHHHHH
T ss_conf ------632689999999777---41875999976476541546414551112477675379999973548899987566
Q ss_pred HHHHHHHHH--CCCCCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHC---CCCCCCHHHHCCCCCCCHHH----CCCCH
Q ss_conf 675433321--0245400135678764310--1345625664456531---67642001100011100000----01210
Q 537021.9.peg.4 153 VLSRCQRFD--LHRISIGDLIELFTKILQE--ESIEFDPEAVAMIARA---SDGSARDGLSLLDQAIARCN----DKIVT 221 (369)
Q Consensus 153 I~SRcq~~~--f~~l~~~~i~~~L~~i~~~--E~i~~d~~~l~~ia~~---s~GslR~Al~lLeq~i~~~~----~~i~~ 221 (369)
|.||-+... |+|-+.+|+...|..-++. ..-.+++++++++|.. ..||.|.|+.+|..+.-..+ +.++.
T Consensus 176 v~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~ 255 (366)
T COG1474 176 VKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSE 255 (366)
T ss_pred HHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 76506876355289898999999999998540468748039999999887618647760899999999865407885370
Q ss_pred HHHHH
Q ss_conf 32200
Q 537021.9.peg.4 222 SSVRL 226 (369)
Q Consensus 222 e~v~~ 226 (369)
+.+..
T Consensus 256 ~~v~~ 260 (366)
T COG1474 256 DHVRE 260 (366)
T ss_pred HHHHH
T ss_conf 04788
No 96
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.05 E-value=1.6e-09 Score=90.36 Aligned_cols=180 Identities=20% Similarity=0.351 Sum_probs=110.0
Q ss_pred CHHHHHHHHHHHH-----HCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 8489999999999-----82876706201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4 3 GQKPMIKTLTNAF-----KSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV 77 (369)
Q Consensus 3 Gq~~~~~~l~~~~-----~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~ 77 (369)
|-+.+++.+-..+ ..+.=+.-+.|.||||+|||++|+-.|++|+..--. |+-|.--|-
T Consensus 326 GL~~vKeRile~lAv~~~~~~~kg~IlclvGpPGvGKTSl~~sIA~al~r~f~r-----------------islGGv~De 388 (784)
T PRK10787 326 GLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVR-----------------MALGGVRDE 388 (784)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEE-----------------EECCCCCCH
T ss_conf 657799999999999986246778779964699877246999999985898699-----------------806887888
Q ss_pred CCCCCCCCCCHHHH-HHHHHHHHHHHHCCCCCEEEEECHHHCCC----CHHHHHHHHHHHCCC----------------C
Q ss_conf 22453322334555-66555445654204652377511566480----016789999972122----------------1
Q 537021.9.peg.4 78 VELDAASHTSIDDV-REIIDQIYYKPISARFRVYIMDEVQMLST----AAFNGLLKTLEEPPP----------------H 136 (369)
Q Consensus 78 ~e~~~~s~~~id~i-r~l~~~~~~~p~~~~~kv~iid~a~~m~~----~a~NaLLK~lEEPp~----------------~ 136 (369)
-||.|-..+=|.-+ -.++..+.. .....=|+++||.|+|+. +-+.|||-.|. |-. +
T Consensus 389 aeirGHrrTYvgampGrii~~l~~--a~~~nPv~llDEiDK~~~~~~Gdp~salLEvLD-peQN~~F~Dhyl~~~~DlS~ 465 (784)
T PRK10787 389 AEIRGHRRTYIGSMPGKLIQKMAK--VGVKNPLFLLDEIDKMSSDMRGDPASALLEVLD-PEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred HHHCCCCCCCCCCCCHHHHHHHHH--HCCCCCEEEEHHHHHHCCCCCCCHHHHHHHHCC-HHHCCCCCCCEEECCCCHHH
T ss_conf 882564334344368389999997--489885665003555224558998899998459-76556400032204645222
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHH----HHHH-HHH-----HHCCCCCCHHHHHHHHHC--CCCCCCH
Q ss_conf 11466506754330356754333210245400135----6787-643-----101345625664456531--6764200
Q 537021.9.peg.4 137 VKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLI----ELFT-KIL-----QEESIEFDPEAVAMIARA--SDGSARD 203 (369)
Q Consensus 137 ~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~----~~L~-~i~-----~~E~i~~d~~~l~~ia~~--s~GslR~ 203 (369)
|.||.++++.+ ++++.+-|.-++.+...+.++=. .||- +.+ ....+.++++++..|.+. -+..+|.
T Consensus 466 v~Fi~TaN~~~-ip~pLlDRmE~i~~~gYt~~eK~~Ia~~~l~p~~~~~~gl~~~~~~~~~~~~~~ii~~ytrEaGvR~ 543 (784)
T PRK10787 466 VMFVATSNSMN-IPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRS 543 (784)
T ss_pred EEEEEECCCCC-CCHHHHHHEEEEEECCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 58997327677-8767763121554116767889999997453999998289965674399999998753365444251
No 97
>KOG1942 consensus
Probab=99.01 E-value=1.3e-08 Score=83.71 Aligned_cols=119 Identities=25% Similarity=0.314 Sum_probs=95.4
Q ss_pred CCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEEC-------------CCCCCCHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 52377511566480016789999972122111466506-------------75433035675433321024540013567
Q 537021.9.peg.4 107 FRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATT-------------EIRKIPITVLSRCQRFDLHRISIGDLIEL 173 (369)
Q Consensus 107 ~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~-------------~~~~ll~TI~SRcq~~~f~~l~~~~i~~~ 173 (369)
.-|.+|||+||+-.+++--|-|.||-|-..++ ||+++ .|+-+++-..-|-.+++-.+-+++++.+.
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~iaPiv-ifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~I 375 (456)
T KOG1942 297 PGVLFIDEVHMLDIECFTYLHKALESPIAPIV-IFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQI 375 (456)
T ss_pred CCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEE-EEECCCCCEEECCCCCCCCCCCCCHHHHHHEEEEEECCCCHHHHHHH
T ss_conf 76268630132426999999998627787569-99627761022177678787889977861266786036998999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHCC-CCCCCHHHHCCCC---CCC-HHHCCCCHHHHHH
Q ss_conf 876431013456256644565316-7642001100011---100-0000121032200
Q 537021.9.peg.4 174 FTKILQEESIEFDPEAVAMIARAS-DGSARDGLSLLDQ---AIA-RCNDKIVTSSVRL 226 (369)
Q Consensus 174 L~~i~~~E~i~~d~~~l~~ia~~s-~GslR~Al~lLeq---~i~-~~~~~i~~e~v~~ 226 (369)
++.-++.|++.++++++.+++..+ .-|+|-|+++|-- +.. ++.+.|..++|.+
T Consensus 376 i~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee 433 (456)
T KOG1942 376 IKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEE 433 (456)
T ss_pred HHHHHHHHCCEECHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCCCCEEECCCHHH
T ss_conf 9998765142322889999876054145788988537888999871985343124899
No 98
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.97 E-value=3.5e-09 Score=87.87 Aligned_cols=175 Identities=20% Similarity=0.309 Sum_probs=104.9
Q ss_pred CCCHHHHHHHHHHHHH-----------CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 9284899999999998-----------28767062010787988889999999996146877788665878999779999
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFK-----------SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAI 69 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~-----------~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i 69 (369)
|.|++.+++.|...|. -.|+|...|++||||+|||.+|+++|..-. .|.
T Consensus 154 VaG~~eaK~el~EiVdfLk~P~k~~~~Gak~PkGvLL~GPPGtGKTlLAkAvAgEa~-------vpF------------- 213 (644)
T PRK10733 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK-------VPF------------- 213 (644)
T ss_pred CCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCC-------CEE-------------
T ss_conf 089789999999999981297999974997998517779899877899999864559-------808-------------
Q ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC--------------CCHHHHHHHHHH--HC
Q ss_conf 77987782224533223345556655544565420465237751156648--------------001678999997--21
Q 537021.9.peg.4 70 IRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS--------------TAAFNGLLKTLE--EP 133 (369)
Q Consensus 70 ~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~--------------~~a~NaLLK~lE--EP 133 (369)
..-+-.|+.|+-- --|-..||++-+.+.... .-|++|||.|.+- .+.-|.||--|. ++
T Consensus 214 ~~~sgsef~e~~v--Gvga~rVR~lF~~Ar~~a----P~IIFIDEiDaig~~R~~~~~gg~~e~~~tlNqlL~EmDGf~~ 287 (644)
T PRK10733 214 FTISGSDFVEMFV--GVGASRVRDMFEQAKKAA----PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 287 (644)
T ss_pred EEEEHHHHHHEEE--ECCHHHHHHHHHHHHHCC----CEEEEEECHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 9978477302225--306899999999999669----9799995322036667898889832888789999999548888
Q ss_pred CCCCCEEEEECCCCCCCHHHHH--HH-HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHCCCCCCCH
Q ss_conf 2211146650675433035675--43-3321024540013567876431013456256-644565316764200
Q 537021.9.peg.4 134 PPHVKFIFATTEIRKIPITVLS--RC-QRFDLHRISIGDLIELFTKILQEESIEFDPE-AVAMIARASDGSARD 203 (369)
Q Consensus 134 p~~~~fil~t~~~~~ll~TI~S--Rc-q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~-~l~~ia~~s~GslR~ 203 (369)
..+++.|-+|+.|+.|=|.++= |- .++.+..++.+.=.+.|+-.+. ++.++++ .+..+|+...|=-+.
T Consensus 288 ~~~ViviaATNrpd~LD~ALlRPGRFDr~I~V~lPd~~~R~~ILkvh~~--~~~l~~dvdl~~lA~~T~GfSGA 359 (644)
T PRK10733 288 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR--RVPLAPDIDAAIIARGTPGFSGA 359 (644)
T ss_pred CCCEEEEEECCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHC--CCCCCCCCCHHHHHCCCCCCCHH
T ss_conf 7876999626997554777716888655999779898899999999964--88777311589884459986703
No 99
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.96 E-value=2.1e-08 Score=82.09 Aligned_cols=133 Identities=20% Similarity=0.311 Sum_probs=87.4
Q ss_pred CCCHHHHHHHHHHHHHCCCC-------C-EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf 92848999999999982876-------7-062010787988889999999996146877788665878999779999779
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRI-------A-QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRG 72 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~-------~-ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~ 72 (369)
||||+++++.+.++|...|. | -++||.||.|+|||-+|+.+|..|+-...........-...-.+ ..-.-|
T Consensus 570 ViGQd~AI~~v~~aI~~sraGL~dp~rPiGsFLFlGPTGVGKTElAK~LA~~LF~~e~~liriDMSEy~E~hs-VSrLiG 648 (857)
T PRK10865 570 VIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHS-VSRLVG 648 (857)
T ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHEEEECCHHHCCCHH-HHHHCC
T ss_conf 5280999999999999986389999997389998689878889999999999838933425625332113012-767558
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC-----------CCCCEEE
Q ss_conf 87782224533223345556655544565420465237751156648001678999997212-----------2111466
Q 537021.9.peg.4 73 NHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP-----------PHVKFIF 141 (369)
Q Consensus 73 ~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp-----------~~~~fil 141 (369)
.-|-++ |-++==.|.+.++.+||. |+++||.|+=.++-+|-||-.|+|-- .||++||
T Consensus 649 aPPGYV--------Gy~eGG~LTeaVRr~PyS----VvLfDEIEKAHpdV~nilLQvlD~G~LtD~~Gr~vdF~NtIIIm 716 (857)
T PRK10865 649 APPGYV--------GYEEGGYLTEAVRRRPYS----VILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIM 716 (857)
T ss_pred CCCCCC--------CCCCCCCHHHHHHHCCCE----EEEEHHHHHHCHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEEE
T ss_conf 998766--------757788110999819877----88632576638589999998703683207999888513348996
Q ss_pred EECCCC
Q ss_conf 506754
Q 537021.9.peg.4 142 ATTEIR 147 (369)
Q Consensus 142 ~t~~~~ 147 (369)
+ +|..
T Consensus 717 T-SN~G 721 (857)
T PRK10865 717 T-SNLG 721 (857)
T ss_pred C-CCHH
T ss_conf 4-6233
No 100
>PRK05642 DNA replication initiation factor; Validated
Probab=98.96 E-value=2.7e-08 Score=81.33 Aligned_cols=197 Identities=14% Similarity=0.201 Sum_probs=126.5
Q ss_pred CCC-HHHHHHHHHHHHHCCC--CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 928-4899999999998287--6706201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4 1 MIG-QKPMIKTLTNAFKSGR--IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV 77 (369)
Q Consensus 1 iiG-q~~~~~~l~~~~~~~~--~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~ 77 (369)
++| ++.+...+++.++... -...+.++||+|+|||-+..+.+....-.. ..+
T Consensus 22 i~g~N~~a~~~~~~l~~~~~~~~~~~l~i~G~~G~GKTHLL~A~~~~~~~~~-------------------------~~~ 76 (234)
T PRK05642 22 YPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRG-------------------------EPA 76 (234)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC-------------------------CCE
T ss_conf 7187599999999987606787788389988999988999999999998079-------------------------967
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC--CCHHHHHHHHHHHCC-CCCCEEEEECC-CCC---CC
Q ss_conf 224533223345556655544565420465237751156648--001678999997212-21114665067-543---30
Q 537021.9.peg.4 78 VELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS--TAAFNGLLKTLEEPP-PHVKFIFATTE-IRK---IP 150 (369)
Q Consensus 78 ~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~--~~a~NaLLK~lEEPp-~~~~fil~t~~-~~~---ll 150 (369)
++++... -.+..-++.+.+ ..+-+++||++|.+. ...+.+|-.++.+-- .+..++++++. |.. .+
T Consensus 77 ~yl~~~~--~~~~~~~~~~~l------~~~d~l~IDDi~~i~g~~~~e~~lF~l~N~~~~~~~~llits~~~P~~l~~~l 148 (234)
T PRK05642 77 VYLPLAE--LLDRGPELLDNL------EQYELVCIDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPVKL 148 (234)
T ss_pred EEEEHHH--HHHHHHHHHHHH------HHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCH
T ss_conf 9978999--875449998624------22798989364554688599999999999999839959995787955523001
Q ss_pred HHHHHHH---HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCH---HHCCCCHHHH
Q ss_conf 3567543---332102454001356787643101345625664456531676420011000111000---0001210322
Q 537021.9.peg.4 151 ITVLSRC---QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIAR---CNDKIVTSSV 224 (369)
Q Consensus 151 ~TI~SRc---q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~---~~~~i~~e~v 224 (369)
|-++||. ..+.+.++++++....|...+...|+.+++++++.|++....|+|....+++++-.+ ...+||..-+
T Consensus 149 ~DL~SRl~~~~~~~i~~l~d~~~~~iL~~~a~~rgi~l~~~v~~yl~~r~~R~~~~L~~~l~~Ld~~sl~~kr~iTiplv 228 (234)
T PRK05642 149 PDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLDQASLQAQRKLTIPFL 228 (234)
T ss_pred HHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 67999995781275148998999999999977546899989999999973588999999999999999983899999999
Q ss_pred HHCCCC
Q ss_conf 000135
Q 537021.9.peg.4 225 RLMLAL 230 (369)
Q Consensus 225 ~~llg~ 230 (369)
.+++|.
T Consensus 229 k~vLg~ 234 (234)
T PRK05642 229 KETLGW 234 (234)
T ss_pred HHHHCC
T ss_conf 998385
No 101
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=3.4e-09 Score=87.98 Aligned_cols=172 Identities=24% Similarity=0.375 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHCCCC-CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 8999999999982876-706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4 5 KPMIKTLTNAFKSGRI-AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA 83 (369)
Q Consensus 5 ~~~~~~l~~~~~~~~~-~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~ 83 (369)
+.|++.|.-.-..+.+ +.-+.|.||||+|||++++-.|++++-.-- +|+-|.--|--||.|-
T Consensus 333 eRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv-----------------R~sLGGvrDEAEIRGH 395 (782)
T COG0466 333 ERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV-----------------RISLGGVRDEAEIRGH 395 (782)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEE-----------------EEECCCCCCHHHHCCC
T ss_conf 99999999998614678857999789988701189999999589779-----------------9954765427775355
Q ss_pred CCCCHHHH-HHHHHHHHHHHHCCCCCEEEEECHHHCCCC----HHHHHHHHHHHCCCC----------------CCEEEE
Q ss_conf 22334555-665554456542046523775115664800----167899999721221----------------114665
Q 537021.9.peg.4 84 SHTSIDDV-REIIDQIYYKPISARFRVYIMDEVQMLSTA----AFNGLLKTLEEPPPH----------------VKFIFA 142 (369)
Q Consensus 84 s~~~id~i-r~l~~~~~~~p~~~~~kv~iid~a~~m~~~----a~NaLLK~lEEPp~~----------------~~fil~ 142 (369)
-++=|-.+ -.++..+.. ..-..=||++||.|+|+.+ -+-|||-+|. |-.| |.||.+
T Consensus 396 RRTYIGaMPGrIiQ~mkk--a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLD-PEQN~~F~DhYLev~yDLS~VmFiaT 472 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKK--AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLD-PEQNNTFSDHYLEVPYDLSKVMFIAT 472 (782)
T ss_pred CCCCCCCCCHHHHHHHHH--HCCCCCEEEEECHHHCCCCCCCCHHHHHHHHCC-HHHCCCHHHCCCCCCCCHHHEEEEEE
T ss_conf 312335687289999998--677687478640333167777886888886269-76567612220167664432588860
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCCCHH---H-HHHHH-HHHHH-----CCCCCCHHHHHHHHHC
Q ss_conf 067543303567543332102454001---3-56787-64310-----1345625664456531
Q 537021.9.peg.4 143 TTEIRKIPITVLSRCQRFDLHRISIGD---L-IELFT-KILQE-----ESIEFDPEAVAMIARA 196 (369)
Q Consensus 143 t~~~~~ll~TI~SRcq~~~f~~l~~~~---i-~~~L~-~i~~~-----E~i~~d~~~l~~ia~~ 196 (369)
+++.+.||.+.+-|.-++++..-+.++ | ..||- +.++. ..+.++++++..|.+.
T Consensus 473 ANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~ 536 (782)
T COG0466 473 ANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRY 536 (782)
T ss_pred CCCCCCCCHHHHCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHCCCCCCCEEECHHHHHHHHHH
T ss_conf 3751329867843030564268886999999998445689997599823355658999999998
No 102
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.95 E-value=5.2e-09 Score=86.62 Aligned_cols=214 Identities=19% Similarity=0.282 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC--CCCCCCC
Q ss_conf 99999999998287670620107879888899999999961468777886658789997799997798778--2224533
Q 537021.9.peg.4 6 PMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVD--VVELDAA 83 (369)
Q Consensus 6 ~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d--~~e~~~~ 83 (369)
+|-..+...+.++--+.++-.+|.||+|||.+.+...+.|.- ....|.-|+ ++||+|-
T Consensus 278 ~I~~Fie~~i~q~GtG~cLYISGVPGTGKTATV~eVIr~L~~--------------------~~~~~~lp~F~fVEINGM 337 (650)
T PTZ00112 278 EIRTFLETGIKQGGTGQILYISGVPGTGKTATVYMVIKELQN--------------------KKLKGQLPWFNLFEINGV 337 (650)
T ss_pred HHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH--------------------HHHCCCCCCCEEEEECCE
T ss_conf 999999864116886656999789999800369999999999--------------------997089998159997363
Q ss_pred C-----------------CC--CHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCC-CCEE--E
Q ss_conf 2-----------------23--34555665554456542046523775115664800167899999721221-1146--6
Q 537021.9.peg.4 84 S-----------------HT--SIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPH-VKFI--F 141 (369)
Q Consensus 84 s-----------------~~--~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~-~~fi--l 141 (369)
. .. .-.+.-.+++... .+ .-+.-|+++||.|.|=+.-|+-|--.++=|... ..+| -
T Consensus 338 kLt~P~qaY~~L~e~Ltg~k~~~~~~A~~lL~k~F-~~-~r~p~VlLvDELD~LvTkkQ~VlYNLFdWPT~~~SkLIVIa 415 (650)
T PTZ00112 338 NLVHPNAAYRVFYKKLFNKKPPNALNSYKELDKLF-NN-NRTPSILIVDEADYIVTKTQKVLFTLFDWPTKKNSKLILII 415 (650)
T ss_pred ECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-CC-CCCCEEEEECHHHHHHHCCCCEEEECCCCCCCCCCEEEEEE
T ss_conf 77987889999999984898886789999999982-68-99718999715777763677457773668898887079999
Q ss_pred EECC---CCCCCHHHHHHH--HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHC---CCCCCCHHHHCCCCCCC
Q ss_conf 5067---543303567543--332102454001356787643101345625664456531---67642001100011100
Q 537021.9.peg.4 142 ATTE---IRKIPITVLSRC--QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARA---SDGSARDGLSLLDQAIA 213 (369)
Q Consensus 142 ~t~~---~~~ll~TI~SRc--q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~---s~GslR~Al~lLeq~i~ 213 (369)
+++- |++++|-|.||- +++.|.|-+.+++.+.+..-+..-+ -++++|+++.|+. --|++|+||.+--+++-
T Consensus 416 IANTMDLPERL~~RVsSRLGltRltF~PYt~~QL~eII~sRL~~~~-~f~~dAIQl~ARKVAavSGDARRALdICRRAvE 494 (650)
T PTZ00112 416 ISNTMDLPYKMKPSCRSRLAFGRLVFSPYKYQQIEKVIKERLENCE-IIDHTALQLCARRVTNYSGDMRKALQICKLAFE 494 (650)
T ss_pred EEECCCCCHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 8506786065666655522885004399899999999999862677-788789999988887503148999999999997
Q ss_pred HHHC-CCCHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 0000-1210322000135677777888876301363346788
Q 537021.9.peg.4 214 RCND-KIVTSSVRLMLALADRNRIMDLFGYLIKGDIINVLQE 254 (369)
Q Consensus 214 ~~~~-~i~~e~v~~llg~~~~~~i~~Ll~ai~~~d~~~al~~ 254 (369)
..++ +|+..+ +......+++.-...++..
T Consensus 495 ~~~~~ki~~~~------------i~~a~n~~~ns~~~~al~~ 524 (650)
T PTZ00112 495 NKNGGKITPRD------------MTRASNMVLDSPLTNALNY 524 (650)
T ss_pred HCCCCEEEHHH------------HHHHHHHHHCCHHHHHHHH
T ss_conf 35687342489------------9999888854088999985
No 103
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.95 E-value=2e-08 Score=82.27 Aligned_cols=133 Identities=21% Similarity=0.342 Sum_probs=87.4
Q ss_pred CCCHHHHHHHHHHHHHCCCC-------C-EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH--
Q ss_conf 92848999999999982876-------7-0620107879888899999999961468777886658789997799997--
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRI-------A-QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAII-- 70 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~-------~-ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~-- 70 (369)
||||+++++.+.++|...|. | -++||.||.|+|||.+|+++|+.|+-.....- ..+ +..-..-..++
T Consensus 567 ViGQd~AI~~I~~aI~~sraGL~dp~rP~GsFlf~GptGvGKTELAKaLAe~Lfg~~~~LI--riD-MSEy~E~hsvsrL 643 (852)
T TIGR03346 567 VVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMV--RID-MSEYMEKHSVARL 643 (852)
T ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEE--EEC-HHHHCCHHHHHHH
T ss_conf 7170999999999999997188889997458998678877689999999999855852069--843-0443012247785
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC-----------CCCCE
Q ss_conf 7987782224533223345556655544565420465237751156648001678999997212-----------21114
Q 537021.9.peg.4 71 RGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP-----------PHVKF 139 (369)
Q Consensus 71 ~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp-----------~~~~f 139 (369)
-|+-|-++ |-++==.|.+.++.+||. |+++||.|+=.++-+|.||-.|++-- .||++
T Consensus 644 iGaPPGYV--------Gy~egG~Lte~vr~~Pys----VvL~DEIEKAh~~V~~~lLQilD~G~ltD~~Gr~vdF~Ntii 711 (852)
T TIGR03346 644 IGAPPGYV--------GYEEGGQLTEAVRRKPYS----VVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVI 711 (852)
T ss_pred CCCCCCCC--------CCCCCCEECHHHHHCCCE----EEEECCHHHHCHHHHHHHHHHHCCCEEECCCCCEEEEEEEEE
T ss_conf 58999767--------768787423989819887----998530543076899999988236743079998885355689
Q ss_pred EEEECCCCC
Q ss_conf 665067543
Q 537021.9.peg.4 140 IFATTEIRK 148 (369)
Q Consensus 140 il~t~~~~~ 148 (369)
|++++--.+
T Consensus 712 imTSN~Ga~ 720 (852)
T TIGR03346 712 IMTSNLGSQ 720 (852)
T ss_pred EEECCCCHH
T ss_conf 861540659
No 104
>PRK08903 hypothetical protein; Validated
Probab=98.94 E-value=1.4e-08 Score=83.51 Aligned_cols=192 Identities=17% Similarity=0.212 Sum_probs=129.5
Q ss_pred CCC-HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf 928-4899999999998287670620107879888899999999961468777886658789997799997798778222
Q 537021.9.peg.4 1 MIG-QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVE 79 (369)
Q Consensus 1 iiG-q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e 79 (369)
|+| ...++..+++......-...+.++||.|+|||-+..+.+....-. .+++.+
T Consensus 21 v~g~n~~~~~~l~~~~~~~~~~~~l~i~G~~G~GKTHLl~a~~~~~~~~-------------------------~~~~~y 75 (227)
T PRK08903 21 IAGENAELVTRLRELAAGPVADRFFYLWGEAGSGRSHLLQALVAAASEG-------------------------GKNARY 75 (227)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC-------------------------CCCEEE
T ss_conf 5777599999999887438878669998999998889999999999806-------------------------997499
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCC--CCCEEEEECCC-C--CCCHHHH
Q ss_conf 45332233455566555445654204652377511566480016789999972122--11146650675-4--3303567
Q 537021.9.peg.4 80 LDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPP--HVKFIFATTEI-R--KIPITVL 154 (369)
Q Consensus 80 ~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~--~~~fil~t~~~-~--~ll~TI~ 154 (369)
+++.+. -+..+ . ....-+++||++|.+....+.+|..++.+--. +.+++++++.| . .+.|-++
T Consensus 76 l~~~~~------~~~~~---~---~~~~d~l~iDDi~~i~~~~q~~lF~l~N~~~~~~~~~ll~s~~~~p~~l~~~~DL~ 143 (227)
T PRK08903 76 LDPASP------LLAFD---F---DPRAELYAVDDVERLDDAQQIALFNLFNRVRAHGKTALLVAGPAAPLALDVREDLR 143 (227)
T ss_pred ECCCCC------HHHHH---H---HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHCCCCHHHH
T ss_conf 651104------57774---2---00189899964114895699999999999997299489971899712012008999
Q ss_pred HHH---HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCH---HHCCCCHHHHHHCC
Q ss_conf 543---332102454001356787643101345625664456531676420011000111000---00012103220001
Q 537021.9.peg.4 155 SRC---QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIAR---CNDKIVTSSVRLML 228 (369)
Q Consensus 155 SRc---q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~---~~~~i~~e~v~~ll 228 (369)
||. ..+.+.+++.+.....|.+.+...|+.+++++++.|++...+|+|....+++++-.+ .+.+||..-+.+++
T Consensus 144 SRl~~gl~~~i~~pdde~~~~iL~~~a~~rgl~l~~~v~~yl~~r~~R~~~~L~~~l~~Ld~~sl~~kr~iTi~lvkevL 223 (227)
T PRK08903 144 TRLGWGLVYEVKPLSDEDKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRAVTLPLLREML 223 (227)
T ss_pred HHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 99938973899797999999999999996299998899999999834789999999999999999829999999999985
Q ss_pred C
Q ss_conf 3
Q 537021.9.peg.4 229 A 229 (369)
Q Consensus 229 g 229 (369)
+
T Consensus 224 a 224 (227)
T PRK08903 224 A 224 (227)
T ss_pred C
T ss_conf 5
No 105
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=98.93 E-value=4.6e-09 Score=86.96 Aligned_cols=90 Identities=22% Similarity=0.421 Sum_probs=57.3
Q ss_pred CEEEEECHHHCC------------CCHHHHHHHHHHHCC----------CCCCEEEE----ECCCCCCCHHHHHHHH-HH
Q ss_conf 237751156648------------001678999997212----------21114665----0675433035675433-32
Q 537021.9.peg.4 108 RVYIMDEVQMLS------------TAAFNGLLKTLEEPP----------PHVKFIFA----TTEIRKIPITVLSRCQ-RF 160 (369)
Q Consensus 108 kv~iid~a~~m~------------~~a~NaLLK~lEEPp----------~~~~fil~----t~~~~~ll~TI~SRcq-~~ 160 (369)
=|++|||.|+.. ..-|-+|||.+|--. .|.+||-. ...|+.|+|-.+-|-- +.
T Consensus 250 GIVFIDEIDKIa~~~~~~g~DVS~EGVQrdLLpivEGt~V~tK~G~V~TdhILFIasGAFh~sKPSDLIPEl~GRlPv~v 329 (442)
T PRK05201 250 GIVFIDEIDKIAKRGEGSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVAKPSDLIPELQGRFPIRV 329 (442)
T ss_pred CCEEECHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHCCCCEEEE
T ss_conf 70451146565303578898977330788878875388555677760255034550450014782022498717550588
Q ss_pred HCCCCCCHHHHHHHHH-----------HHHHCCC--CCCHHHHHHHHHCC
Q ss_conf 1024540013567876-----------4310134--56256644565316
Q 537021.9.peg.4 161 DLHRISIGDLIELFTK-----------ILQEESI--EFDPEAVAMIARAS 197 (369)
Q Consensus 161 ~f~~l~~~~i~~~L~~-----------i~~~E~i--~~d~~~l~~ia~~s 197 (369)
.+.+++.+++...|.+ .+..||+ .++++|+..||+.|
T Consensus 330 ~L~~L~~~dl~~ILtepknsL~kQy~~Lf~~egv~L~Ft~~Al~~IA~~A 379 (442)
T PRK05201 330 ELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIA 379 (442)
T ss_pred ECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHH
T ss_conf 82449999999996786157899999998624967998479999999999
No 106
>PRK06893 DNA replication initiation factor; Validated
Probab=98.91 E-value=3e-08 Score=81.00 Aligned_cols=195 Identities=12% Similarity=0.180 Sum_probs=125.4
Q ss_pred CCH-HHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 284-8999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 2 IGQ-KPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 2 iGq-~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
+|+ ..++..|++...+-.=++ +.++||+|+|||-+..++........... +.+
T Consensus 20 ~~~n~~~~~~l~~~~~~~~~~~-l~i~G~~gsGKTHLLqa~~~~~~~~~~~~-------------------------~yi 73 (229)
T PRK06893 20 SDNNLLLLDSLRKNFIDLKQPF-FYIWGGKSSGKSHLLKAVSNHYLLNQRTA-------------------------IYI 73 (229)
T ss_pred CCCHHHHHHHHHHHCCCCCCCE-EEEECCCCCCHHHHHHHHHHHHHHHCCCE-------------------------EEE
T ss_conf 6874999999997550246987-99989999988999999999999718985-------------------------999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHC--CCCHHHHHHHHHHHCC-CCCCEEEEE-CC-CCC---CCHH
Q ss_conf 53322334555665554456542046523775115664--8001678999997212-211146650-67-543---3035
Q 537021.9.peg.4 81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQML--STAAFNGLLKTLEEPP-PHVKFIFAT-TE-IRK---IPIT 152 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m--~~~a~NaLLK~lEEPp-~~~~fil~t-~~-~~~---ll~T 152 (369)
+... ..+-..++.+.+ ...-+++||+.|.+ ..+.+.+|..++-+-- .+..+++++ .. |.. .+|-
T Consensus 74 ~~~~--~~~~~~~~l~~l------~~~d~l~iDDi~~i~g~~~~e~~lF~l~N~l~~~~~~~ll~ss~~~p~~l~~~l~D 145 (229)
T PRK06893 74 PLSK--SQYFSPAVLENL------EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKESGKTLLLISANQSPHALQIKLPD 145 (229)
T ss_pred EHHH--HHHCCHHHHHHH------HHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCHHHH
T ss_conf 7377--564069999876------54797999672342488389999999999999759917998579883322100267
Q ss_pred HHHHH---HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCC---CHHHCCCCHHHHHH
Q ss_conf 67543---3321024540013567876431013456256644565316764200110001110---00000121032200
Q 537021.9.peg.4 153 VLSRC---QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAI---ARCNDKIVTSSVRL 226 (369)
Q Consensus 153 I~SRc---q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i---~~~~~~i~~e~v~~ 226 (369)
++||. ..+.+.++++++....|.+.+...|+.+++++++.|++....|+|....+++++- .....++|..-|.+
T Consensus 146 L~SRl~~~~~~~i~~~dd~~~~~iL~~~a~~rgl~l~~~v~~yl~~r~~R~~~~l~~~l~~Ld~~sl~~kr~iTiplvke 225 (229)
T PRK06893 146 LASRLTWGEIYQLNDLTDEQKIEVLQRNAYQRGIELSDETANFLLKRLDRDMHTLFDALDLLDKASLQAQRKLTIPFVKE 225 (229)
T ss_pred HHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 99999688369966777579999999999964999998999999998347899999999999999998089999999999
Q ss_pred CCCC
Q ss_conf 0135
Q 537021.9.peg.4 227 MLAL 230 (369)
Q Consensus 227 llg~ 230 (369)
++|+
T Consensus 226 vL~l 229 (229)
T PRK06893 226 ILGL 229 (229)
T ss_pred HHCC
T ss_conf 8683
No 107
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=98.91 E-value=1.5e-08 Score=83.23 Aligned_cols=193 Identities=15% Similarity=0.236 Sum_probs=116.1
Q ss_pred CCC--HHHHHHHHHHHHHC-CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 928--48999999999982-876706201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4 1 MIG--QKPMIKTLTNAFKS-GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV 77 (369)
Q Consensus 1 iiG--q~~~~~~l~~~~~~-~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~ 77 (369)
+|| ++.+.+......+. |.--..+.++||+|+|||-+..+.+....-..+..... + -++..+... .
T Consensus 11 ~vg~~N~~a~~~~~~i~~~~~~~~npl~i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~----y---l~~~~~~~~-~--- 79 (219)
T pfam00308 11 VIGSSNRFAHAAALAVAEAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALRNFPNLRVV----Y---LTSEEFLND-F--- 79 (219)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEE----E---EEHHHHHHH-H---
T ss_conf 2368389999999999967587678269988999988899999999999849998288----8---439999998-8---
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC--CCHHHHHHHHHHHCC-CCCCEEEEECC-CC---CCC
Q ss_conf 224533223345556655544565420465237751156648--001678999997212-21114665067-54---330
Q 537021.9.peg.4 78 VELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS--TAAFNGLLKTLEEPP-PHVKFIFATTE-IR---KIP 150 (369)
Q Consensus 78 ~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~--~~a~NaLLK~lEEPp-~~~~fil~t~~-~~---~ll 150 (369)
+++.....+.+.|+ .-....+++||++|.+. ...+.+|.-++..-- .+...++++.. |. .++
T Consensus 80 --~~~l~~~~~~~f~~---------~l~~~d~l~iDDi~~l~~~~~~ee~lf~l~N~~~~~~~~lllts~~~p~~l~~~~ 148 (219)
T pfam00308 80 --VDALRDNKIEAFKK---------SYRNVDLLLIDDIQFLAGKEKTQEEFFHTFNALHENNKQIVLTSDRPPKELEGFE 148 (219)
T ss_pred --HHHHHCCCHHHHHH---------HHHHCCHHHHCCHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC
T ss_conf --99998188889999---------9763233652236765686478999999999999729869997799810024532
Q ss_pred HHHHHHH---HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHH
Q ss_conf 3567543---3321024540013567876431013456256644565316764200110001110000
Q 537021.9.peg.4 151 ITVLSRC---QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARC 215 (369)
Q Consensus 151 ~TI~SRc---q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~ 215 (369)
+-.+||. ..+.+.++++++....|.+.+...|+.+++++++.|++....|+|.-..+|+++-+++
T Consensus 149 ~dL~SRL~~g~~~~i~~pdd~~~~~iL~~~a~~r~l~l~~~v~~yl~~r~~R~~r~L~~~L~~L~~~~ 216 (219)
T pfam00308 149 DRLRSRFEWGLIIAIEPPDLETRLAILRKKAEEENINIPNEVLNFIAQRITDNVRELEGALNRLLAFA 216 (219)
T ss_pred HHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 77999986875661169999999999999999849999999999999842798999999999999855
No 108
>KOG0730 consensus
Probab=98.88 E-value=4.1e-08 Score=80.01 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=16.4
Q ss_pred CCCEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 7670620107879888899999999961
Q 537021.9.peg.4 19 RIAQSYMLSGTRGIGKTTTARIIARSLN 46 (369)
Q Consensus 19 ~~~ha~lf~G~~G~GK~~~a~~~A~~l~ 46 (369)
+.|--.|.+||+|+||+.+++++|+.-.
T Consensus 216 ~~prg~Ll~gppg~Gkt~l~~aVa~e~~ 243 (693)
T KOG0730 216 KPPRGLLLYGPPGTGKTFLVRAVANEYG 243 (693)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 9998744438999981899999999737
No 109
>KOG2004 consensus
Probab=98.88 E-value=1.7e-08 Score=82.76 Aligned_cols=172 Identities=24% Similarity=0.403 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHHHHCCCC-----CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 848999999999982876-----706201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4 3 GQKPMIKTLTNAFKSGRI-----AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV 77 (369)
Q Consensus 3 Gq~~~~~~l~~~~~~~~~-----~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~ 77 (369)
|=+++++.+-.++.-+++ +.-+-|+||||+|||++|+-.|++||-+--. ++-|.--|+
T Consensus 415 gm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfR-----------------fSvGG~tDv 477 (906)
T KOG2004 415 GMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFR-----------------FSVGGMTDV 477 (906)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCEEE-----------------EECCCCCCH
T ss_conf 168899999999998751466788379986899877321899999984874699-----------------853663427
Q ss_pred CCCCCCCCCCHHHH-HHHHHHHHHHHHCCCCCEEEEECHHHCCC----CHHHHHHHHHHHCCCC----------------
Q ss_conf 22453322334555-66555445654204652377511566480----0167899999721221----------------
Q 537021.9.peg.4 78 VELDAASHTSIDDV-REIIDQIYYKPISARFRVYIMDEVQMLST----AAFNGLLKTLEEPPPH---------------- 136 (369)
Q Consensus 78 ~e~~~~s~~~id~i-r~l~~~~~~~p~~~~~kv~iid~a~~m~~----~a~NaLLK~lEEPp~~---------------- 136 (369)
-||-|--.+=|.-+ -.+++-+ +...-..-+++|||+|++-. +-+-|||-.|. |-.|
T Consensus 478 AeIkGHRRTYVGAMPGkiIq~L--K~v~t~NPliLiDEvDKlG~g~qGDPasALLElLD-PEQNanFlDHYLdVp~DLSk 554 (906)
T KOG2004 478 AEIKGHRRTYVGAMPGKIIQCL--KKVKTENPLILIDEVDKLGSGHQGDPASALLELLD-PEQNANFLDHYLDVPVDLSK 554 (906)
T ss_pred HHHCCCCEEEECCCCHHHHHHH--HHHCCCCCEEEEEHHHHHCCCCCCCHHHHHHHHCC-HHHCCCHHHHCCCCCCCHHH
T ss_conf 7642542110014884899999--86177886588532234178877986899987439-65355345420266421110
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHH----HHHHH-HH-----HHHCCCCCCHHHHHHHH
Q ss_conf 1146650675433035675433321024540013----56787-64-----31013456256644565
Q 537021.9.peg.4 137 VKFIFATTEIRKIPITVLSRCQRFDLHRISIGDL----IELFT-KI-----LQEESIEFDPEAVAMIA 194 (369)
Q Consensus 137 ~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i----~~~L~-~i-----~~~E~i~~d~~~l~~ia 194 (369)
|+||-+++..+.|+|+++-|.-++.+.-...++= .+||. +. +..|.++++++++..+.
T Consensus 555 VLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI 622 (906)
T KOG2004 555 VLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALI 622 (906)
T ss_pred EEEEEECCCCCCCCHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHH
T ss_conf 68898536445698566412232203672279899999984125789874998786586299999999
No 110
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=98.87 E-value=1.2e-09 Score=91.36 Aligned_cols=95 Identities=20% Similarity=0.288 Sum_probs=61.7
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH--HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 62010787988889999999996146877788665878999779999--7798778222453322334555665554456
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAI--IRGNHVDVVELDAASHTSIDDVREIIDQIYY 100 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i--~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~ 100 (369)
.+||.||+|+|||.+|+++|+.|+....... .--|+.-..-..+ .-|+.| +..+.++--.+.+.+..
T Consensus 5 ~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i---~~dm~e~~~~~~v~~l~g~~~--------gyvg~~~~G~l~~~v~~ 73 (168)
T pfam07724 5 SFLFLGPTGVGKTELAKALAELLFGDERALI---RIDMSEYMEEHSVSRLIGAPP--------GYVGYEEGGQLTEAVRR 73 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCEE---EECCCCCCCHHHHHHHCCCCC--------CCCCCCCCCCHHHHHHH
T ss_conf 9998898998999999999999679853448---855756542569998705899--------87262426507899983
Q ss_pred HHHCCCCCEEEEECHHHCCCCHHHHHHHHHHH
Q ss_conf 54204652377511566480016789999972
Q 537021.9.peg.4 101 KPISARFRVYIMDEVQMLSTAAFNGLLKTLEE 132 (369)
Q Consensus 101 ~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEE 132 (369)
.| |-|++|||.|+...+.+|+||+.||+
T Consensus 74 ~p----~~VillDEIeKa~~~V~~~LL~ild~ 101 (168)
T pfam07724 74 KP----YSIVLIDEIEKAHPGVQNDLLQILEG 101 (168)
T ss_pred CC----CCEEEEHHHHHHCHHHHHHHHHHCCC
T ss_conf 89----84898657766589999999987058
No 111
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.87 E-value=8.6e-08 Score=77.61 Aligned_cols=194 Identities=22% Similarity=0.372 Sum_probs=111.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCC---------CC-CCCCCCC--CCCCCHHH--
Q ss_conf 9284899999999998287670620107879888899999999961468---------77-7886658--78999779--
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKT---------AH-IDVPTVE--FEGFGEHC-- 66 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~---------~~-~~~~~~~--~c~~c~~c-- 66 (369)
||||+++++..+.+.++.| | .|+-||||+||+.+|++++..|--+. +. ...|.+. |-|..+.-
T Consensus 33 VIGQe~Av~~i~~Aa~qrr--h-vlliG~PGtGKSmlakam~elLpk~~ledilv~pNp~d~~~P~v~~vpag~g~~iv~ 109 (637)
T PRK13765 33 VIGQEHAVEVIKKAAKQRR--H-VMLIGSPGTGKSMLAKAMAELLPKEELQDILVYPNPEDPNNPKIRTVPAGKGKEIVE 109 (637)
T ss_pred CCCHHHHHHHHHHHHHHHC--C-EEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCEEEEECCCCCHHHHH
T ss_conf 4571999999999998437--3-898689998799999999975798865627996798888898057416875136899
Q ss_pred --HHHHCCCCC--CC--C--------------------------------CCCCCC----------CC---C---HH---
Q ss_conf --999779877--82--2--------------------------------245332----------23---3---45---
Q 537021.9.peg.4 67 --QAIIRGNHV--DV--V--------------------------------ELDAAS----------HT---S---ID--- 89 (369)
Q Consensus 67 --~~i~~~~~~--d~--~--------------------------------e~~~~s----------~~---~---id--- 89 (369)
+.-...... +. . ...+.. |. + ||
T Consensus 110 ~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~pkllv~~~~~~~aPfvdAtg 189 (637)
T PRK13765 110 AHKEEARKKAQMRNFLMMIIILGIIGYAFITAQVLLMGIIAAALIYMALRYVMPKEDAMVPKLLVSNSDKKTAPFVDATG 189 (637)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCEECCCC
T ss_conf 99998763101336679999999999999998999999999999999998762355355764012477777898330787
Q ss_pred -HHHHHHHHHHHHHHCC-------------------CCCEEEEECHHHCCCCHHHHHHHHHHHC----------------
Q ss_conf -5566555445654204-------------------6523775115664800167899999721----------------
Q 537021.9.peg.4 90 -DVREIIDQIYYKPISA-------------------RFRVYIMDEVQMLSTAAFNGLLKTLEEP---------------- 133 (369)
Q Consensus 90 -~ir~l~~~~~~~p~~~-------------------~~kv~iid~a~~m~~~a~NaLLK~lEEP---------------- 133 (369)
....|..++..-|+++ ..=|.+||+...|...+|++||+.|+|-
T Consensus 190 a~a~aLlGdVrHdP~qsGGlgTPah~Rv~aGAiHkA~gGvL~IDei~~L~~~~q~~Ll~alq~~k~~I~g~~e~SsgA~v 269 (637)
T PRK13765 190 AHAGALLGDVRHDPFQSGGLETPAHERVEAGAIHKAHKGVLFIDEINTLRLESQQSLLTAMQEKKYPITGQSERSSGAMV 269 (637)
T ss_pred CCHHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHCCCCEEEEEHHHHCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCC
T ss_conf 44466517742486334898999610002661211358569984456479889999999996591532368866677625
Q ss_pred -----CCCCCEEEEEC--CCCCCCHHHHHHHHHHH----CCCC---CCH---HHHHHHHHHHHHCC-CC-CCHHHHHHHH
Q ss_conf -----22111466506--75433035675433321----0245---400---13567876431013-45-6256644565
Q 537021.9.peg.4 134 -----PPHVKFIFATT--EIRKIPITVLSRCQRFD----LHRI---SIG---DLIELFTKILQEES-IE-FDPEAVAMIA 194 (369)
Q Consensus 134 -----p~~~~fil~t~--~~~~ll~TI~SRcq~~~----f~~l---~~~---~i~~~L~~i~~~E~-i~-~d~~~l~~ia 194 (369)
|-..++|++++ .++.+.|..||||+-|. |+.- +++ .+.+++.+-+...| +. ++.++...|.
T Consensus 270 ~tepvP~Df~lV~aGn~d~~~~m~palrsri~g~gyev~~~~~m~dt~enr~k~arfiaqev~~dg~iPhfdr~AVaeII 349 (637)
T PRK13765 270 RTEPVPCDFIMVAAGNLDAIENMHPALRSRIRGYGYEVYMNDTMEDTPENRKKLVRFVAQEVKRDGKIPHFDREAVEEII 349 (637)
T ss_pred CCCCCCEEEEEEEECCHHHHHHCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 78986613699995372766643998886510477499823567787889999999999999743888999989999999
Q ss_pred HCC
Q ss_conf 316
Q 537021.9.peg.4 195 RAS 197 (369)
Q Consensus 195 ~~s 197 (369)
+.+
T Consensus 350 ~eA 352 (637)
T PRK13765 350 REA 352 (637)
T ss_pred HHH
T ss_conf 999
No 112
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.87 E-value=5.5e-08 Score=79.05 Aligned_cols=152 Identities=22% Similarity=0.322 Sum_probs=95.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHH-------CCCCCCCCCCCCCCCCCCHHHHH-HHCC
Q ss_conf 928489999999999828767062010787988889999999996-------14687778866587899977999-9779
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSL-------NYKTAHIDVPTVEFEGFGEHCQA-IIRG 72 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l-------~c~~~~~~~~~~~~c~~c~~c~~-i~~~ 72 (369)
||||+.++..|.=+..+.+++| .|+.|++|+||||++|.||..| +|.-+-... .|-..|+.|.. +..+
T Consensus 14 IvGQe~~k~aLll~av~p~iGg-VLi~G~~GtgKStlvRala~lLP~i~~v~~~~f~~~p~---~p~~~~~~~~~~~~~~ 89 (347)
T CHL00081 14 IVGQEEMKLALLLNVIDPKIGG-VMIMGDRGTGKSTTIRALVDLLPEIEVVKNDPFNSDPR---DPDLMSDEVRERIRNG 89 (347)
T ss_pred HCCHHHHHHHHHHHHCCCCCCE-EEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCC---CCCCCCHHHHHHHCCC
T ss_conf 5384999999999825788786-99878998749999999998578742206887678989---8100242666543146
Q ss_pred CCCC-------CCCC-CCCCC----CCHHHHHHHHHH-HHHHH---HCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf 8778-------2224-53322----334555665554-45654---2046523775115664800167899999721221
Q 537021.9.peg.4 73 NHVD-------VVEL-DAASH----TSIDDVREIIDQ-IYYKP---ISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPH 136 (369)
Q Consensus 73 ~~~d-------~~e~-~~~s~----~~id~ir~l~~~-~~~~p---~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~ 136 (369)
...- ++++ -+++. .++|--+.+.+- ..+.| .++.+-|..+||+..+...-+|+||-.+++- .+
T Consensus 90 ~~~~~~~~~~p~v~lPlgaTEDrv~GslDie~al~~G~~~f~pGlLa~A~rGiLyvDEINll~d~~v~~LLda~a~G-~~ 168 (347)
T CHL00081 90 EKIPTKKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSAASG-WN 168 (347)
T ss_pred CCCCCEECCCCEEECCCCCCCCEECCCHHHHHHHHCCCCCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCC-EE
T ss_conf 66752114686253688885230114000998984587115653122203885886145432379999999998558-08
Q ss_pred ------------CCEEEEE-CCCC--CCCHHHHHHH
Q ss_conf ------------1146650-6754--3303567543
Q 537021.9.peg.4 137 ------------VKFIFAT-TEIR--KIPITVLSRC 157 (369)
Q Consensus 137 ------------~~fil~t-~~~~--~ll~TI~SRc 157 (369)
+.|++++ -||+ .|.|-+.=|-
T Consensus 169 ~VEReG~S~~~Pa~F~liaT~NPeEgeLrp~llDRF 204 (347)
T CHL00081 169 TVEREGISIRHPARFVLIGSGNPEEGELRPQLLDRF 204 (347)
T ss_pred EECCCCEEECCCCCEEEEECCCCCCCCCCHHHHHHE
T ss_conf 980464233057500688557865567488888263
No 113
>KOG1051 consensus
Probab=98.86 E-value=7.6e-09 Score=85.36 Aligned_cols=132 Identities=18% Similarity=0.292 Sum_probs=89.8
Q ss_pred CCCHHHHHHHHHHHHHCCC-------CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf 9284899999999998287-------670620107879888899999999961468777886658789997799997798
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGR-------IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGN 73 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~-------~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~ 73 (369)
|+||+.++..+..+|..-| -.-.+||.||.|+|||-+|+++|..+.-.....- .+ .+..+..
T Consensus 564 V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~I--ri-------Dmse~~e-- 632 (898)
T KOG1051 564 VIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFI--RL-------DMSEFQE-- 632 (898)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEE--EE-------CHHHHHH--
T ss_conf 466377899999999843203578888858999788841389999999999728864268--96-------1455555--
Q ss_pred CCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC-----------CCCCEE
Q ss_conf 7782224533--223345556655544565420465237751156648001678999997212-----------211146
Q 537021.9.peg.4 74 HVDVVELDAA--SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP-----------PHVKFI 140 (369)
Q Consensus 74 ~~d~~e~~~~--s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp-----------~~~~fi 140 (369)
+-...++ +-.|-++.-.|.+.++.+|+. |++|||+|.=-..-+|.||..+|+-- .||+||
T Consensus 633 ---vskligsp~gyvG~e~gg~LteavrrrP~s----VvLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~I 705 (898)
T KOG1051 633 ---VSKLIGSPPGYVGKEEGGQLTEAVKRRPYS----VVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFI 705 (898)
T ss_pred ---HHHCCCCCCCCCCCHHHHHHHHHHHCCCCE----EEEEECHHHCCHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEE
T ss_conf ---653048995554630577888997169965----9998302222888999999998627400588867504645999
Q ss_pred EEECCCCCCC
Q ss_conf 6506754330
Q 537021.9.peg.4 141 FATTEIRKIP 150 (369)
Q Consensus 141 l~t~~~~~ll 150 (369)
++++--...+
T Consensus 706 MTsn~~~~~i 715 (898)
T KOG1051 706 MTSNVGSSAI 715 (898)
T ss_pred EECCCCHHHH
T ss_conf 9426316666
No 114
>PRK05907 hypothetical protein; Provisional
Probab=98.83 E-value=1.3e-06 Score=68.92 Aligned_cols=244 Identities=17% Similarity=0.207 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCC-CCEEEEECC-----C-CCCCHHHHHHHHHHHCC
Q ss_conf 5665554456542046523775115664800167899999721221-114665067-----5-43303567543332102
Q 537021.9.peg.4 91 VREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPH-VKFIFATTE-----I-RKIPITVLSRCQRFDLH 163 (369)
Q Consensus 91 ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~-~~fil~t~~-----~-~~ll~TI~SRcq~~~f~ 163 (369)
+.++..+.---..-+.+.|+-|-.||+|+.+...-|-.----|.++ |+|+++|+. . .+++.. =|.-+.=.
T Consensus 54 ~~~l~~wte~~glFaS~evi~I~q~ekls~~~refL~~Yar~P~p~Ltl~lfttk~~~f~sL~kkl~sA---~~lslfge 130 (311)
T PRK05907 54 IQELLSWTETFGLFASKETIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTTKQECFSSLSKKLPSA---LCLSLFGE 130 (311)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEHHHHHHCHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHCCHH---HHHHHHCC
T ss_conf 999988898622412230100031974135489999998439998579986111589999999865121---21687344
Q ss_pred CCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHH-HCCCCCCCHHHHCCCCCCCHHHCC--CCHHHHHHCCCCCCHHHHHH
Q ss_conf 454--0013567876431013456256644565-316764200110001110000001--21032200013567777788
Q 537021.9.peg.4 164 RIS--IGDLIELFTKILQEESIEFDPEAVAMIA-RASDGSARDGLSLLDQAIARCNDK--IVTSSVRLMLALADRNRIMD 238 (369)
Q Consensus 164 ~l~--~~~i~~~L~~i~~~E~i~~d~~~l~~ia-~~s~GslR~Al~lLeq~i~~~~~~--i~~e~v~~llg~~~~~~i~~ 238 (369)
-+. +.-|.+.|.+-+..+|++.+-.+..+.+ .+.++++-.-++-+++++-+-+++ +++.++...+.......+|+
T Consensus 131 ~~~drekri~~~liqrA~~~g~Scsl~~Aslfvkkfpqt~~~~ll~Ef~KLlC~vG~k~sle~sDIqsfv~kke~~SlWk 210 (311)
T PRK05907 131 WFADRDKRIAQLLIQRAELLGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKQSLEASDIQSFVVKKEQASLWK 210 (311)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHH
T ss_conf 65678889999999899985667507899999997666647789999999998846854001887999995562128998
Q ss_pred HHHHHHCCCHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 887630136334678876543-0476213578777534899999974574122344998899999999862998999999
Q 537021.9.peg.4 239 LFGYLIKGDIINVLQEFSSQY-DSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRF 317 (369)
Q Consensus 239 Ll~ai~~~d~~~al~~l~~l~-~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~ 317 (369)
+-++++.+|..+.......+. +.|.||..++..+-+.+-.=++. ..+.. .+.-..+..-++.+.+...
T Consensus 211 LrDAllqRd~~~~~~ll~aLl~d~GedpL~li~flRsQ~lygLrS--i~e~~---------~erk~~~f~AyG~erl~q~ 279 (311)
T PRK05907 211 LRDALLRRDPVEGHSLLRSLLSDMGEDPLGIINFLRSQCLYGLRS--IEEQS---------KERKHRIFVAYGKERLLQA 279 (311)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH--HHHHH---------CCCHHHHHHHHCHHHHHHH
T ss_conf 888998138588999999999866998089999999999987678--99861---------5311279998468999999
Q ss_pred HHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Q ss_conf 999999999830278-8899999999999533
Q 537021.9.peg.4 318 WQMILKGISEIEGFS-RPMEAVEMVLIRLAHA 348 (369)
Q Consensus 318 lq~l~~a~~~Lk~n~-np~L~lE~lLlkL~~~ 348 (369)
+..+..++.-++.|+ +|-+++|.+++||.+.
T Consensus 280 l~llf~aEsliKNn~qD~i~a~EtL~irmt~~ 311 (311)
T PRK05907 280 LNLLFYAESLIKNNVQDPILAVETLVIRMTNL 311 (311)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
T ss_conf 99999999998636877289999999987159
No 115
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=98.82 E-value=2.1e-08 Score=82.13 Aligned_cols=168 Identities=20% Similarity=0.321 Sum_probs=115.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCC-CCCCC--
Q ss_conf 928489999999999828767062010787988889999999996146877788665878999779999779-87782--
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRG-NHVDV-- 77 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~-~~~d~-- 77 (369)
+||=+..++.--+-+-+.+=.. =||.|.||||||.+|.-||+.+ ..+ .-|..
T Consensus 210 LIGRE~EleRtiQvLCRR~KNN-Pl~VGEPGVGKTAI~EGLA~~I------------------------~~~~kvPe~Lk 264 (774)
T TIGR02639 210 LIGREDELERTIQVLCRRKKNN-PLLVGEPGVGKTAIVEGLAQRI------------------------AEGQKVPEVLK 264 (774)
T ss_pred CCCCHHHHHHHHHHHCCCCCCC-CCEECCCCCCHHHHHHHHHHHH------------------------HCCCCCCHHHC
T ss_conf 3456688742333203456788-7204488864489999999986------------------------41564670024
Q ss_pred ----CCCCC----CC--CCC-H-HHHHHHHHHHHHHHHCCCCC-EEEEECHHHC---------CCCHHHHHHHHHHHCCC
Q ss_conf ----22453----32--233-4-55566555445654204652-3775115664---------80016789999972122
Q 537021.9.peg.4 78 ----VELDA----AS--HTS-I-DDVREIIDQIYYKPISARFR-VYIMDEVQML---------STAAFNGLLKTLEEPPP 135 (369)
Q Consensus 78 ----~e~~~----~s--~~~-i-d~ir~l~~~~~~~p~~~~~k-v~iid~a~~m---------~~~a~NaLLK~lEEPp~ 135 (369)
+-+|= |+ =+| . +-++++++.++-.| -. |..|||.|+. +.+|+|=|=-.|.. .
T Consensus 265 n~~IY~LDmG~LLAGTKYRGDFE~RLK~V~~Ei~~~~----~anILFIDEIHTIVGAGATSGGsmDASNLLKPaL~~--G 338 (774)
T TIGR02639 265 NAKIYSLDMGTLLAGTKYRGDFEERLKAVVSEIEKEP----NANILFIDEIHTIVGAGATSGGSMDASNLLKPALAS--G 338 (774)
T ss_pred CCCEEEECHHHHHHHCCCCCHHHHHHHHHHHHHHCCC----CCCEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHC--C
T ss_conf 7834540434564102454247899999999985289----995466411010331787875155244321125307--8
Q ss_pred CCCEEEEECCCC--CCC---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHHCCCC
Q ss_conf 111466506754--330---356754333210245400135678764310----1345625664456531676
Q 537021.9.peg.4 136 HVKFIFATTEIR--KIP---ITVLSRCQRFDLHRISIGDLIELFTKILQE----ESIEFDPEAVAMIARASDG 199 (369)
Q Consensus 136 ~~~fil~t~~~~--~ll---~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~----E~i~~d~~~l~~ia~~s~G 199 (369)
...||-.||.-+ +.- -.+-=|-|.++..=||.+|-.+-|+.+-.+ ++|.|++++++..|.+|.=
T Consensus 339 ~iRCIGsTTy~EY~~~FeKDrALsRRFQKIDv~EPs~eet~~ILkGLk~~YE~fH~V~Y~~eal~~Av~LS~r 411 (774)
T TIGR02639 339 KIRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEQYEEFHHVKYSDEALEAAVELSAR 411 (774)
T ss_pred CEEEECCCCHHHHHCHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHH
T ss_conf 7786226524864111010202165423311795788899999986554201325011386999999999888
No 116
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.81 E-value=3.4e-08 Score=80.61 Aligned_cols=148 Identities=21% Similarity=0.325 Sum_probs=91.1
Q ss_pred CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC---C-C--CHHHHH
Q ss_conf 767062010787988889999999996146877788665878999779999779877822245332---2-3--345556
Q 537021.9.peg.4 19 RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAAS---H-T--SIDDVR 92 (369)
Q Consensus 19 ~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s---~-~--~id~ir 92 (369)
+.|...|++||||||||.+|++.|...... ++.+|+.. . . +=..+|
T Consensus 257 ~~PkGvLL~GpPG~GKtl~AKAvA~e~~~p----------------------------~l~l~~~~l~~~~vGesE~~~r 308 (491)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANEWNLP----------------------------LLRLDVGKLFGGIVGESESRMR 308 (491)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCC----------------------------EEEEEHHHHHHHHCCHHHHHHH
T ss_conf 999879997999987899999998663894----------------------------6996679975600670499999
Q ss_pred HHHHHHH-HHHHCCCCCEEEEECHHHC-C-----------CCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHH--HH
Q ss_conf 6555445-6542046523775115664-8-----------001678999997212211146650675433035675--43
Q 537021.9.peg.4 93 EIIDQIY-YKPISARFRVYIMDEVQML-S-----------TAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLS--RC 157 (369)
Q Consensus 93 ~l~~~~~-~~p~~~~~kv~iid~a~~m-~-----------~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~S--Rc 157 (369)
++...+. ..| -|+.|||.|+. . ..-.+.||.-|.|-...|++|-+||.|+.|+|.+.= |-
T Consensus 309 ~~f~~A~~~aP-----~ilfiDEidk~~~~~~~~~d~g~s~rv~~~~Lt~m~e~~~~VfViattN~~~~L~pellR~GRF 383 (491)
T CHL00195 309 QMIQLAETISP-----CILWIDEIDKAFSGLDSKGDSGTSNRVLATFITWLSEKKSPVFVVATANNIDSLPLELLRKGRF 383 (491)
T ss_pred HHHHHHHHHCC-----EEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHCCCCCC
T ss_conf 99999986198-----5899746545425888888872328999999998646899769999589975589877089877
Q ss_pred HHHHCCCCCCHHHHHHHHHH-HHHCC-CCCCHHHHHHHHHCCCC
Q ss_conf 33210245400135678764-31013-45625664456531676
Q 537021.9.peg.4 158 QRFDLHRISIGDLIELFTKI-LQEES-IEFDPEAVAMIARASDG 199 (369)
Q Consensus 158 q~~~f~~l~~~~i~~~L~~i-~~~E~-i~~d~~~l~~ia~~s~G 199 (369)
-.+-|-++|..+-..-+-+| +.+-. ...++-.+..+|..++|
T Consensus 384 D~~~~v~lP~~~~R~~I~~ihl~~~~~~~~~~~d~~~la~~t~g 427 (491)
T CHL00195 384 DEIFFLDLPNLEERELIFKIHLKRFRPNSWQNYDIEILSQLTNK 427 (491)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCC
T ss_conf 70476489598999999999985447887554699999976859
No 117
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.80 E-value=1.9e-07 Score=75.03 Aligned_cols=194 Identities=14% Similarity=0.175 Sum_probs=124.5
Q ss_pred CCC-HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf 928-4899999999998287670620107879888899999999961468777886658789997799997798778222
Q 537021.9.peg.4 1 MIG-QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVE 79 (369)
Q Consensus 1 iiG-q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e 79 (369)
|+| .+.+...++.++.... ...+.++||+|+|||-+..+......-.... +.+
T Consensus 25 i~g~n~~~~~al~~~~~~~~-~~~l~l~G~~G~GKTHLLqA~~~~~~~~~~~-------------------------~~y 78 (235)
T PRK08084 25 YPGDNDSLLAALQNVLRQEH-SGYIYLWGREGAGRSHLLHAACAELSQRGDA-------------------------VGY 78 (235)
T ss_pred CCCCCHHHHHHHHHHHHCCC-CCEEEEECCCCCCHHHHHHHHHHHHHCCCCC-------------------------EEE
T ss_conf 44886999999999985789-8769998999988899999999999707985-------------------------799
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC--CCHHHHHHHHHHHCC--CCCCEEEEECCC-CC---CCH
Q ss_conf 4533223345556655544565420465237751156648--001678999997212--211146650675-43---303
Q 537021.9.peg.4 80 LDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS--TAAFNGLLKTLEEPP--PHVKFIFATTEI-RK---IPI 151 (369)
Q Consensus 80 ~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~--~~a~NaLLK~lEEPp--~~~~fil~t~~~-~~---ll~ 151 (369)
+.... ..+-.-++.+.+. ..-+++||++|.+. ...+.+|-.++-+-- .++.+++++..+ .. .+|
T Consensus 79 l~~~~--~~~~~~~~l~~l~------~~dll~iDDi~~i~g~~~~ee~lF~l~N~~~~~g~~~ll~ts~~~P~~l~~~l~ 150 (235)
T PRK08084 79 VPLDK--RAWFVPEVLEGME------QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLP 150 (235)
T ss_pred EEHHH--HHHHHHHHHHHHH------HCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCH
T ss_conf 87798--6651799998764------189899827455469978999999999999984896699967988243023128
Q ss_pred HHHHHH---HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHH---HCCCCHHHHH
Q ss_conf 567543---3321024540013567876431013456256644565316764200110001110000---0012103220
Q 537021.9.peg.4 152 TVLSRC---QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARC---NDKIVTSSVR 225 (369)
Q Consensus 152 TI~SRc---q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~---~~~i~~e~v~ 225 (369)
=++||. ..+.+.+++.++..+.|.+.+...|+.++++.++.|++....|+|....+++++-.++ ..++|..-+.
T Consensus 151 DL~SRl~~g~~~~i~~~dde~~~~iL~~~a~~rgl~l~~~V~~yl~~~~~R~~~~L~~~l~~Ld~~Sl~~kr~iTip~vk 230 (235)
T PRK08084 151 DLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDKASITAQRKLTIPFVK 230 (235)
T ss_pred HHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 89999956972785599989999999999997399999899999998615889999999999999999819999999999
Q ss_pred HCC
Q ss_conf 001
Q 537021.9.peg.4 226 LML 228 (369)
Q Consensus 226 ~ll 228 (369)
+++
T Consensus 231 evL 233 (235)
T PRK08084 231 EIL 233 (235)
T ss_pred HHH
T ss_conf 996
No 118
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=98.80 E-value=5e-08 Score=79.36 Aligned_cols=149 Identities=22% Similarity=0.412 Sum_probs=106.6
Q ss_pred HCCCC-CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC---C-C--CH
Q ss_conf 82876-7062010787988889999999996146877788665878999779999779877822245332---2-3--34
Q 537021.9.peg.4 16 KSGRI-AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAAS---H-T--SI 88 (369)
Q Consensus 16 ~~~~~-~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s---~-~--~i 88 (369)
+.++. =| .+|.|-|||||||.||++|+-+ .+=+ |....| ++|++=|. . | .-
T Consensus 37 k~~~~~LH-MiFKGNPGTGKTTVAR~~gklf-~emn------------------vL~KGH--~iE~ERADLVGEYIGHTA 94 (261)
T TIGR02881 37 KTSKQVLH-MIFKGNPGTGKTTVARLLGKLF-KEMN------------------VLSKGH--LIEVERADLVGEYIGHTA 94 (261)
T ss_pred CCCCCEEE-EEEECCCCCCHHHHHHHHHHHH-HHCC------------------CCCCCC--EEEEEECCCCCCCCCCHH
T ss_conf 14884478-7742786684389999999998-5337------------------567886--788762221223203004
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECHHHCC--------CCHHHHHHHHHHHCCCCCCEEEEECC--CC---CCCHHHHH
Q ss_conf 5556655544565420465237751156648--------00167899999721221114665067--54---33035675
Q 537021.9.peg.4 89 DDVREIIDQIYYKPISARFRVYIMDEVQMLS--------TAAFNGLLKTLEEPPPHVKFIFATTE--IR---KIPITVLS 155 (369)
Q Consensus 89 d~ir~l~~~~~~~p~~~~~kv~iid~a~~m~--------~~a~NaLLK~lEEPp~~~~fil~t~~--~~---~ll~TI~S 155 (369)
...|+++..+ .|+ |.+||||=.|. ++|-+.|-|-+|+....-+.||+.=. -+ .+-|=++|
T Consensus 95 qkTRe~~kkA-----~GG--vLFiDEAYSLaRGGEKDFGKEAIDtLVK~mEd~~~~lvlILAGY~~EM~yFL~~NPGL~S 167 (261)
T TIGR02881 95 QKTREVIKKA-----LGG--VLFIDEAYSLARGGEKDFGKEAIDTLVKAMEDQRNELVLILAGYSDEMDYFLSLNPGLRS 167 (261)
T ss_pred HHHHHHHHHH-----CCC--CHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCC
T ss_conf 8999999986-----388--005577777614888876620888999987615698689970876899998620779777
Q ss_pred HH-HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 43-332102454001356787643101345625664456
Q 537021.9.peg.4 156 RC-QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMI 193 (369)
Q Consensus 156 Rc-q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~i 193 (369)
|- -.+.|+--+.+++.+-.+..+++-.+.++++|...+
T Consensus 168 RFPi~i~FPdY~~eeL~~Ia~~m~~~ReY~Lt~~A~~~l 206 (261)
T TIGR02881 168 RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKL 206 (261)
T ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 665054188998889999999998646422578899999
No 119
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.80 E-value=4.7e-08 Score=79.54 Aligned_cols=144 Identities=24% Similarity=0.311 Sum_probs=90.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
++|++.++...-.++..|+ | .||.||||+|||++|+.+|+.++-.-... .| +||+..-
T Consensus 26 ~~g~~~~~~~~l~a~~~~~--~-vll~G~PG~gKT~la~~lA~~l~~~~~~i------~~-------------t~~l~p~ 83 (329)
T COG0714 26 VVGDEEVIELALLALLAGG--H-VLLEGPPGVGKTLLARALARALGLPFVRI------QC-------------TPDLLPS 83 (329)
T ss_pred CCCCHHHHHHHHHHHHCCC--C-EEEECCCCCCHHHHHHHHHHHHCCCCEEE------EC-------------CCCCCHH
T ss_conf 5266999999999998599--7-78779898777999999999838981899------56-------------8998888
Q ss_pred CCCCCCCHHHHHHH---HHHHHHHHHCCCC---CEEEEECHHHCCCCHHHHHHHHHHH----------CCCCCCE-EEEE
Q ss_conf 53322334555665---5544565420465---2377511566480016789999972----------1221114-6650
Q 537021.9.peg.4 81 DAASHTSIDDVREI---IDQIYYKPISARF---RVYIMDEVQMLSTAAFNGLLKTLEE----------PPPHVKF-IFAT 143 (369)
Q Consensus 81 ~~~s~~~id~ir~l---~~~~~~~p~~~~~---kv~iid~a~~m~~~a~NaLLK~lEE----------Pp~~~~f-il~t 143 (369)
| -+|...+... .....+.+----. .|+++||..+-+...+|+||-.|+| .+...-| +++|
T Consensus 84 d---~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vt~~~~~~~~~~~~f~viaT 160 (329)
T COG0714 84 D---LLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIAT 160 (329)
T ss_pred H---HCCHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCEEEECCCCCCCCCCCCEEEEE
T ss_conf 8---2056888766425771898468733451338998703458988999999999726897079665337998789982
Q ss_pred CCC------CCCCHHHHHHH-HHHHCCCCCCHH
Q ss_conf 675------43303567543-332102454001
Q 537021.9.peg.4 144 TEI------RKIPITVLSRC-QRFDLHRISIGD 169 (369)
Q Consensus 144 ~~~------~~ll~TI~SRc-q~~~f~~l~~~~ 169 (369)
.|| .-+++...-|| ..+.+..+..++
T Consensus 161 ~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~ 193 (329)
T COG0714 161 QNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEE 193 (329)
T ss_pred CCCCCCCCCCCCCHHHHCCCEEEEECCCCCCHH
T ss_conf 686765788789988881038877648997388
No 120
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=98.80 E-value=1.1e-08 Score=84.31 Aligned_cols=167 Identities=26% Similarity=0.421 Sum_probs=101.7
Q ss_pred CCCHHHHHHHHHHHHH-----------CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 9284899999999998-----------28767062010787988889999999996146877788665878999779999
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFK-----------SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAI 69 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~-----------~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i 69 (369)
|-|.+.+++.|...|. -+|+|---|++||||||||.+|++.| .|. +-|-..
T Consensus 61 VAG~dEAKeEl~EiVdFLK~P~kf~~LGaKIPKGVLLvGPPGTGKTLLAKAvA----GEA---~VPFF~----------- 122 (505)
T TIGR01241 61 VAGIDEAKEELVEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVA----GEA---GVPFFS----------- 122 (505)
T ss_pred CCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH----CCC---CCCCEE-----------
T ss_conf 44532333433313422269637987278898714731787842467887520----258---896247-----------
Q ss_pred HCCCCCCCCCC---CCCCCCCHHHHHHHHHHHHHH-HHCCCCCEEEEECHHHC---------------CCCHHHHHHHHH
Q ss_conf 77987782224---533223345556655544565-42046523775115664---------------800167899999
Q 537021.9.peg.4 70 IRGNHVDVVEL---DAASHTSIDDVREIIDQIYYK-PISARFRVYIMDEVQML---------------STAAFNGLLKTL 130 (369)
Q Consensus 70 ~~~~~~d~~e~---~~~s~~~id~ir~l~~~~~~~-p~~~~~kv~iid~a~~m---------------~~~a~NaLLK~l 130 (369)
-+|| ||+|+ =||| -||+|-+++... |- ||+|||.|.. .+|+=|-||==|
T Consensus 123 iSGS--dFVEMFVGVGAS-----RVRDLFeqAK~nAPC-----IIFIDEIDAVGr~RGaG~lGGGnDEREQTLNQLLVEM 190 (505)
T TIGR01241 123 ISGS--DFVEMFVGVGAS-----RVRDLFEQAKKNAPC-----IIFIDEIDAVGRQRGAGELGGGNDEREQTLNQLLVEM 190 (505)
T ss_pred ECCC--CEEECCCCCCCE-----EHHHHHHHHHHHCCC-----EEEEECHHHCCCCCCCCCCCCCCCHHHHHHHHHHEEC
T ss_conf 4076--101112056400-----014457999971897-----0564010000333564366765413554332331331
Q ss_pred HHCCCCC-CEEEEECCCCCCCHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHH--CCCCCCHH-HHHHHHHCCCC
Q ss_conf 7212211-14665067543303567543332102--45400135678764310--13456256-64456531676
Q 537021.9.peg.4 131 EEPPPHV-KFIFATTEIRKIPITVLSRCQRFDLH--RISIGDLIELFTKILQE--ESIEFDPE-AVAMIARASDG 199 (369)
Q Consensus 131 EEPp~~~-~fil~t~~~~~ll~TI~SRcq~~~f~--~l~~~~i~~~L~~i~~~--E~i~~d~~-~l~~ia~~s~G 199 (369)
.=...++ ++|+++||--.+|+.=+=|==+|+ | .++..++.-+ ++|++- .+++++++ .|+.||+..-|
T Consensus 191 DGF~~~~gvIv~AATNRPDvLD~ALLRPGRFD-RQv~V~~PD~~GR-~~IL~VH~~~~kLa~~vdL~~~Ar~TPG 263 (505)
T TIGR01241 191 DGFGTNTGVIVIAATNRPDVLDPALLRPGRFD-RQVVVDLPDIKGR-EEILKVHAKNKKLAPDVDLKAVARRTPG 263 (505)
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC-CEEECCCCCHHHH-HHHHHHHHCCCCCCCCCCHHHHHHHCCC
T ss_conf 78589885799850488411651006878744-5134588874678-9999998548899702477999701568
No 121
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.76 E-value=1.9e-07 Score=75.08 Aligned_cols=128 Identities=23% Similarity=0.369 Sum_probs=85.1
Q ss_pred CCCHHHHHHHHHHHHHCCC--------CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH--
Q ss_conf 9284899999999998287--------670620107879888899999999961468777886658789997799997--
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGR--------IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAII-- 70 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~--------~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~-- 70 (369)
||||+++++.+.+++...| ---++||.||.|+|||-+|+.+|+.|. .. ....+ +..-..-..++
T Consensus 460 viGQ~~Ai~~v~~ai~~~raGL~~~~rPigsFlf~GPTGVGKTElak~LA~~L~--~~---lir~D-MSEy~e~hsvsrL 533 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--IE---LLRFD-MSEYMERHTVSRL 533 (758)
T ss_pred HHCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH--HH---HHCCC-HHHHCCHHHHHHH
T ss_conf 745499999999999998638889999705899978998777999999999986--67---72142-6653120147774
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC-----------CCCCE
Q ss_conf 7987782224533223345556655544565420465237751156648001678999997212-----------21114
Q 537021.9.peg.4 71 RGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP-----------PHVKF 139 (369)
Q Consensus 71 ~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp-----------~~~~f 139 (369)
-|.-|-++ |-|+==.|.+.++..|+. |+++||.|+-.++-+|-||-.|+|-- .||++
T Consensus 534 iGaPPGYV--------Gy~eGG~Lte~Vr~~Pys----VvL~DEIEKAhpdV~nilLQvlD~G~LtD~~Gr~vdF~NtiI 601 (758)
T PRK11034 534 IGAPPGYV--------GFDQGGLLTDAVIKHPHA----VLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVL 601 (758)
T ss_pred CCCCCCCC--------CCCCCCCCCHHHHHCCCE----EEEEHHHHHHCHHHHHHHHHHCCCCCCCCCCCCEEECEEEEE
T ss_conf 48998666--------767777012878739877----997336756398999988732377830179999884400199
Q ss_pred EEEECCCC
Q ss_conf 66506754
Q 537021.9.peg.4 140 IFATTEIR 147 (369)
Q Consensus 140 il~t~~~~ 147 (369)
|+++ |..
T Consensus 602 ImTS-N~G 608 (758)
T PRK11034 602 VMTT-NAG 608 (758)
T ss_pred EEEC-CCC
T ss_conf 9825-617
No 122
>PRK08727 hypothetical protein; Validated
Probab=98.75 E-value=2.5e-07 Score=74.17 Aligned_cols=194 Identities=14% Similarity=0.200 Sum_probs=120.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
|+|.+.....++... .+.-++.+.++||.|+|||-++.+.+....-... ...++
T Consensus 22 i~~~n~~~a~l~~~~-~~~~~~~lyl~G~~GsGKTHLl~a~~~~~~~~~~-------------------------~~~yl 75 (233)
T PRK08727 22 IAAPDGLLAQLQALA-AGQSSDWLYLSGPAGTGKTHLALSLCAAAEQAGR-------------------------SSAYL 75 (233)
T ss_pred CCCCHHHHHHHHHHH-CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCC-------------------------CEEEE
T ss_conf 678559999999874-3888898999899999889999999999982799-------------------------72884
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC--CCHHHHHHHHHHHCC-CCCCEEEEECC-CCC---CCHHH
Q ss_conf 533223345556655544565420465237751156648--001678999997212-21114665067-543---30356
Q 537021.9.peg.4 81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS--TAAFNGLLKTLEEPP-PHVKFIFATTE-IRK---IPITV 153 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~--~~a~NaLLK~lEEPp-~~~~fil~t~~-~~~---ll~TI 153 (369)
+... ..+...+.++.+ + ..-++.||++|.+. .+.+.+|-.+...=. .+..++++++. |.. .+|-+
T Consensus 76 ~l~~--~~~~~~~~l~~l-----e-~~~ll~iDDid~i~g~~~~e~aLFhL~N~~~~~~~~ll~ts~~~P~~l~~~l~DL 147 (233)
T PRK08727 76 PLQA--AAGRLRDALEAL-----E-GRSLVALDGVDSIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDL 147 (233)
T ss_pred EHHH--HHHHHHHHHHHH-----C-CCCEEEEECCHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCHHHH
T ss_conf 4788--532025677531-----0-3897898550112698279999999999998619838997798956623100219
Q ss_pred HHHHH---HHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCC---CHHHCCCCHHHHHHC
Q ss_conf 75433---321024540013567876431013456256644565316764200110001110---000001210322000
Q 537021.9.peg.4 154 LSRCQ---RFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAI---ARCNDKIVTSSVRLM 227 (369)
Q Consensus 154 ~SRcq---~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i---~~~~~~i~~e~v~~l 227 (369)
+||.. .+.+.++++++....|.+.+...|+.+++++++.+++...=|++...++++++- .....+||..-+.++
T Consensus 148 ~SRL~~~~~~~l~~~dD~~~~~iL~~~a~~rgl~l~~~V~~Yll~r~~R~~~~l~~~l~~LD~~SL~~kr~iTip~vk~v 227 (233)
T PRK08727 148 RSRLSQCIRIGLPVLDDVARAAVLRDRAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLDRESLAAKRRITVPFLRRV 227 (233)
T ss_pred HHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 99996692288578897999999999999869999989999999856889999999999999999980898889999999
Q ss_pred C
Q ss_conf 1
Q 537021.9.peg.4 228 L 228 (369)
Q Consensus 228 l 228 (369)
+
T Consensus 228 L 228 (233)
T PRK08727 228 L 228 (233)
T ss_pred H
T ss_conf 9
No 123
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.74 E-value=1.9e-07 Score=75.06 Aligned_cols=132 Identities=19% Similarity=0.307 Sum_probs=86.9
Q ss_pred CCCHHHHHHHHHHHHHCCCC-------C-EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf 92848999999999982876-------7-062010787988889999999996146877788665878999779999779
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRI-------A-QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRG 72 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~-------~-ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~ 72 (369)
||||+++++.+.+++...|. | -++||.||.|+|||-+|+.+|..|+............-...-.+ ..-.-|
T Consensus 511 ViGQd~AI~~vs~ai~rsraGl~~~~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~~liR~DMSEy~E~hs-vsrLIG 589 (823)
T CHL00095 511 IIGQDEAVVAVSKAIRRARVGLKNPNRPIASFIFCGPTGVGKTELTKALASYFFGSEEAMIRLDMSEYMEKHT-VSKLIG 589 (823)
T ss_pred HCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCC-HHHHCC
T ss_conf 4076999999999999997089989997468998789988779999999999747820258853510155420-767458
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC-----------CCCCEEE
Q ss_conf 87782224533223345556655544565420465237751156648001678999997212-----------2111466
Q 537021.9.peg.4 73 NHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP-----------PHVKFIF 141 (369)
Q Consensus 73 ~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp-----------~~~~fil 141 (369)
.-|-++ |-|+==.|.+.++.+||. |+++||.|+-.++-+|-||-.|+|-- .||++|+
T Consensus 590 aPPGYV--------Gy~eGG~LTeaVrr~Pys----VvLfDEIEKAHpdV~nilLQvlDdG~LtD~~Gr~vdF~NtIIIm 657 (823)
T CHL00095 590 SPPGYV--------GYNEGGQLTEAVRKKPYT----VVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIM 657 (823)
T ss_pred CCCCCC--------CCCCCCCHHHHHHCCCCE----EEEECHHHHCCHHHHHHHHHHCCCCCCCCCCCCEEECEEEEEEE
T ss_conf 998766--------778788201988719986----99862131138899998876516884348999988431039997
Q ss_pred EECC
Q ss_conf 5067
Q 537021.9.peg.4 142 ATTE 145 (369)
Q Consensus 142 ~t~~ 145 (369)
+++=
T Consensus 658 TSNl 661 (823)
T CHL00095 658 TSNL 661 (823)
T ss_pred CCCC
T ss_conf 1650
No 124
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.7e-07 Score=73.98 Aligned_cols=153 Identities=20% Similarity=0.287 Sum_probs=89.2
Q ss_pred CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC--CCCCCCCCCHHHHHHHHH
Q ss_conf 767062010787988889999999996146877788665878999779999779877822--245332233455566555
Q 537021.9.peg.4 19 RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVV--ELDAASHTSIDDVREIID 96 (369)
Q Consensus 19 ~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~--e~~~~s~~~id~ir~l~~ 96 (369)
+-+...||+||||+|||.+|+++|..++..--... .|++. ++ + -+-..||++..
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~--------------------~~~l~sk~v-G---esek~ir~~F~ 329 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVK--------------------GSELLSKWV-G---ESEKNIRELFE 329 (494)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEC--------------------CHHHHHHHH-H---HHHHHHHHHHH
T ss_conf 88836999889997589999998754498248843--------------------355540776-5---99999999999
Q ss_pred HHHHHHHCCCCCEEEEECHHHC----C-------CCHHHHHHHHHH--HCCCCCCEEEEECCCCCCCHHHHH--HHH-HH
Q ss_conf 4456542046523775115664----8-------001678999997--212211146650675433035675--433-32
Q 537021.9.peg.4 97 QIYYKPISARFRVYIMDEVQML----S-------TAAFNGLLKTLE--EPPPHVKFIFATTEIRKIPITVLS--RCQ-RF 160 (369)
Q Consensus 97 ~~~~~p~~~~~kv~iid~a~~m----~-------~~a~NaLLK~lE--EPp~~~~fil~t~~~~~ll~TI~S--Rcq-~~ 160 (369)
.+. ....-|++|||+|.+ + ....|-||..+. |+-.+|+-|-+|+.|+.+-|.++- |-. ++
T Consensus 330 ~A~----~~~p~iifiDEiDs~~~~r~~~~~~~~~rv~~~ll~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i 405 (494)
T COG0464 330 KAR----KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLI 405 (494)
T ss_pred HHH----HCCCCEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHCCCCCEEEE
T ss_conf 999----6699889748866674128998763799999999999747544376489964798332687562436630378
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHCCCC
Q ss_conf 102454001356787643101345-625664456531676
Q 537021.9.peg.4 161 DLHRISIGDLIELFTKILQEESIE-FDPEAVAMIARASDG 199 (369)
Q Consensus 161 ~f~~l~~~~i~~~L~~i~~~E~i~-~d~~~l~~ia~~s~G 199 (369)
.|.+++.++-...++..+...+.. .++-.++.+++..+|
T Consensus 406 ~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 406 YVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEG 445 (494)
T ss_pred EECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 7179898999999999854156511556419999987527
No 125
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.73 E-value=3.2e-06 Score=66.04 Aligned_cols=179 Identities=18% Similarity=0.312 Sum_probs=118.0
Q ss_pred CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC----------CCCC
Q ss_conf 876706201078798888999999999614687778866587899977999977987782224533----------2233
Q 537021.9.peg.4 18 GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA----------SHTS 87 (369)
Q Consensus 18 ~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~----------s~~~ 87 (369)
|..-..+.++|+.|.|||-+-.+.+..+.-..+.. .|+.+.+. .+.+
T Consensus 142 g~~yNPLfIyG~~GlGKTHLl~AIgn~~~~~~p~~-----------------------~v~Y~tae~F~~~~v~al~~~~ 198 (447)
T PRK00149 142 GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNA-----------------------KVVYVSSEKFTNDFVKALRNNA 198 (447)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCC-----------------------EEEEEEHHHHHHHHHHHHHCCC
T ss_conf 76778558977998878899999999999858997-----------------------2899549999999999985186
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC--CCHHHHHHHHHHHCC-CCCCEEEEECCC----CCCCHHHHHHHH--
Q ss_conf 45556655544565420465237751156648--001678999997212-211146650675----433035675433--
Q 537021.9.peg.4 88 IDDVREIIDQIYYKPISARFRVYIMDEVQMLS--TAAFNGLLKTLEEPP-PHVKFIFATTEI----RKIPITVLSRCQ-- 158 (369)
Q Consensus 88 id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~--~~a~NaLLK~lEEPp-~~~~fil~t~~~----~~ll~TI~SRcq-- 158 (369)
+++.|+- |+ ..-|.+|||.+.+. ...|.-|..++..-- .+-..||++..+ ..+-+-++||..
T Consensus 199 ~~~Fr~~-----yr----~~DvLliDDiqfl~gk~~tqeeff~~fn~l~~~~kqiv~tsd~~P~~l~~l~~rL~SRf~~G 269 (447)
T PRK00149 199 MEEFKEK-----YR----SVDVLLIDDIQFLAGKEKTQEEFFHTFNALHENNKQIVITSDRPPKELEGLEDRLRSRFEWG 269 (447)
T ss_pred HHHHHHH-----HH----CCCEEEECHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHCC
T ss_conf 9999999-----97----28854321488860557799999999999998499689957889676565117788676376
Q ss_pred -HHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHH---HCCCCHHHHHHCC
Q ss_conf -321024540013567876431013456256644565316764200110001110000---0012103220001
Q 537021.9.peg.4 159 -RFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARC---NDKIVTSSVRLML 228 (369)
Q Consensus 159 -~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~---~~~i~~e~v~~ll 228 (369)
.+.+.+++.+.-...|++-++.+++.++++++.+||..-.||+|.-...+-++.+++ +..++.+.+..++
T Consensus 270 l~~~i~~Pd~e~r~~Il~~k~~~~~~~l~~~v~~~iA~~~~~nvR~LeGal~~l~a~~~~~~~~i~~~~~~~~l 343 (447)
T PRK00149 270 LTVDIEPPDLETRVAILQKKAEEEGINLPNEVLEFIAKRIRSNIRELEGALNRLVAYASLTGRPITLELAKEAL 343 (447)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 26510599999999999999997289999899999997126889999999999999999868999999999999
No 126
>pfam01637 Arch_ATPase Archaeal ATPase. This family contain a conserved P-loop motif that is involved in binding ATP. This family is almost exclusively found in archaebacteria and particularly in Methanococcus jannaschii that encodes sixteen members of this family.
Probab=98.72 E-value=4.3e-07 Score=72.48 Aligned_cols=195 Identities=15% Similarity=0.082 Sum_probs=116.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCC--------
Q ss_conf 284899999999998287670620107879888899999999961468777886658789997799997798--------
Q 537021.9.peg.4 2 IGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGN-------- 73 (369)
Q Consensus 2 iGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~-------- 73 (369)
+|-+.-.+.|.+.+.++.- +..+++||+|+|||++++.+++.+......... .+ |.....-..+....
T Consensus 2 ~~Re~EL~~L~~~~~~~~~-~~ivi~G~RR~GKTsLi~~~~~~~~~~~~~~i~--~~-~~~~~~~~~~~~~~~~~~l~~~ 77 (223)
T pfam01637 2 FDREKELKELEEWAERGTY-PIIVVYGPRRCGKTALLREFLEELRELGYRVIY--YD-PLRREFEEKLDRFEEAKRLAEA 77 (223)
T ss_pred CCHHHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE--EE-CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8979999999999966997-189998688787999999999863346852899--95-1444379999988888999999
Q ss_pred CCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC-CC----HHHHHHHHHHHCC--CCCCEEEEEC
Q ss_conf 778222453--3223345556655544565420465237751156648-00----1678999997212--2111466506
Q 537021.9.peg.4 74 HVDVVELDA--ASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS-TA----AFNGLLKTLEEPP--PHVKFIFATT 144 (369)
Q Consensus 74 ~~d~~e~~~--~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~-~~----a~NaLLK~lEEPp--~~~~fil~t~ 144 (369)
..+...... ........+.++.+.+. ..++.-|++|||+..+. .. --+.|.++++..+ .++.+|+|.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~---~~~~~~iiviDEfq~l~~~~~~~~~~~~l~~~~d~~~~~~~~~~I~~GS 154 (223)
T pfam01637 78 LGDALPKIGIAKSKLAFLSLTLLFELLK---RKGKKIAIIIDEVQYAIGLNGAESYVKLLLNLIDYPPKEYHLIVVLCGS 154 (223)
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHH---HCCCCEEEEEECHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 8765123322211207889999999998---5599659997016776402443059999999999752457758999727
Q ss_pred CCCCCCHHHH------HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCH
Q ss_conf 7543303567------5433321024540013567876431013456256644565316764200
Q 537021.9.peg.4 145 EIRKIPITVL------SRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARD 203 (369)
Q Consensus 145 ~~~~ll~TI~------SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~ 203 (369)
+.+-+..-+. -|-..+.++|++..+..+++.+-.++.++.++++.+..+....+|.++.
T Consensus 155 ~~~~m~~~~~~~~plygR~~~i~l~p~~~~~~~efl~~~f~e~~~~~~~~~~~~iy~~~gG~P~y 219 (223)
T pfam01637 155 SEGLTIELLDYKSPLYGRHRWALLKPFDFETAWNFLREGFEELYEPGPKEEFEEVWRLLGGNPGY 219 (223)
T ss_pred HHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHH
T ss_conf 19999998620565357502277268998999999999999847899989999999996983899
No 127
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.71 E-value=4.1e-07 Score=72.62 Aligned_cols=194 Identities=15% Similarity=0.216 Sum_probs=125.3
Q ss_pred HHHHHHCC--CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC--CC
Q ss_conf 99999828--767062010787988889999999996146877788665878999779999779877822245332--23
Q 537021.9.peg.4 11 LTNAFKSG--RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAAS--HT 86 (369)
Q Consensus 11 l~~~~~~~--~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s--~~ 86 (369)
+...+..+ +.-.-++++||.|.|||-+..+.....+-..+ .+-++.+.+.. +.
T Consensus 101 a~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~-----------------------~a~v~y~~se~f~~~ 157 (408)
T COG0593 101 AAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGP-----------------------NARVVYLTSEDFTND 157 (408)
T ss_pred HHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC-----------------------CCEEEECCHHHHHHH
T ss_conf 999987566886895799879999789999999999986299-----------------------864885048998999
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCC--HHHHHHHHHHHCCCCC-CEEEEECC-CCC---CCHHHHHHH--
Q ss_conf 34555665554456542046523775115664800--1678999997212211-14665067-543---303567543--
Q 537021.9.peg.4 87 SIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTA--AFNGLLKTLEEPPPHV-KFIFATTE-IRK---IPITVLSRC-- 157 (369)
Q Consensus 87 ~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~--a~NaLLK~lEEPp~~~-~fil~t~~-~~~---ll~TI~SRc-- 157 (369)
=|..+|+ .+--.++-.- ..-+.+||+++.+... .+.+|--++.+-..+- ..++++.. |.. +.|-++||.
T Consensus 158 ~v~a~~~-~~~~~Fk~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~ 235 (408)
T COG0593 158 FVKALRD-NEMEKFKEKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEW 235 (408)
T ss_pred HHHHHHH-HHHHHHHHHH-CCCEEEECHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCHHHHHHHHC
T ss_conf 9999885-0488888764-2673555138675677157999999999888508879997078832211035889989863
Q ss_pred -HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHH---CCCCHHHHHHCCC
Q ss_conf -33210245400135678764310134562566445653167642001100011100000---0121032200013
Q 537021.9.peg.4 158 -QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCN---DKIVTSSVRLMLA 229 (369)
Q Consensus 158 -q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~---~~i~~e~v~~llg 229 (369)
..+.+.+++.+.....|.+-++..++.++++++..+|..-..|+|+....|+++.+++. ..+|.+.+.+++.
T Consensus 236 Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~ 311 (408)
T COG0593 236 GLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILK 311 (408)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 0577527988899999999999865888887999999997003099999999999999985387576999999999
No 128
>KOG2680 consensus
Probab=98.71 E-value=2.4e-07 Score=74.36 Aligned_cols=101 Identities=28% Similarity=0.421 Sum_probs=85.4
Q ss_pred CCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEEC------------CCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 52377511566480016789999972122111466506------------754330356754333210245400135678
Q 537021.9.peg.4 107 FRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATT------------EIRKIPITVLSRCQRFDLHRISIGDLIELF 174 (369)
Q Consensus 107 ~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~------------~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L 174 (369)
.-|.+|||+||+-.+++.-|=+-||+--..+ .+++|+ +|+-+|--..-|..++.-.|.+.+++.+.|
T Consensus 289 pGVLFIDEvHMLDIEcFsFlNrAlE~d~~Pi-iimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~IL 367 (454)
T KOG2680 289 PGVLFIDEVHMLDIECFSFLNRALENDMAPI-IIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKIL 367 (454)
T ss_pred CCEEEEEEEHHHHHHHHHHHHHHHHHCCCCE-EEEECCCCEEEEECCCCCCCCCCCHHHHHHHHEEECCCCCHHHHHHHH
T ss_conf 5517874002111579998888765046857-999727755776057778988886777644125525657688999998
Q ss_pred HHHHHHCCCCCCHHHHHHHHHCC-CCCCCHHHHCC
Q ss_conf 76431013456256644565316-76420011000
Q 537021.9.peg.4 175 TKILQEESIEFDPEAVAMIARAS-DGSARDGLSLL 208 (369)
Q Consensus 175 ~~i~~~E~i~~d~~~l~~ia~~s-~GslR~Al~lL 208 (369)
+--|..|.+.++++|++++.+.+ +-|+|-|++++
T Consensus 368 ~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Li 402 (454)
T KOG2680 368 RIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLI 402 (454)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 75500521335878999999861312378999998
No 129
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.71 E-value=3e-07 Score=73.56 Aligned_cols=131 Identities=18% Similarity=0.312 Sum_probs=88.6
Q ss_pred CCCHHHHHHHHHHHHHCCCC-------C-EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH--
Q ss_conf 92848999999999982876-------7-0620107879888899999999961468777886658789997799997--
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRI-------A-QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAII-- 70 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~-------~-ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~-- 70 (369)
||||+.++..+.++|...|. | -++||.||.|+|||-+|+.+|..|+-......- .+ +..-..-..++
T Consensus 568 ViGQ~~Av~~v~~ai~~sraGl~d~~rPigsFLFlGPTGVGKTElAK~LA~~LFg~e~~liR--~D-MSEy~E~hsvsrL 644 (852)
T TIGR03345 568 VIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLIT--IN-MSEFQEAHTVSRL 644 (852)
T ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEE--EC-CHHHCCHHHHHHH
T ss_conf 72849999999999999871799999985689987899877899999999997198611478--42-2432104368786
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC-----------CCCCE
Q ss_conf 7987782224533223345556655544565420465237751156648001678999997212-----------21114
Q 537021.9.peg.4 71 RGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP-----------PHVKF 139 (369)
Q Consensus 71 ~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp-----------~~~~f 139 (369)
-|.-|-++ |-|+==.|.+.++.+||. |+++||.|+-.++-+|-||-.|+|-- .||++
T Consensus 645 iGaPPGYV--------Gy~eGG~LTe~Vrr~Pys----VvLfDEIEKAHpdV~nilLQvlD~G~LtD~~Gr~vdF~NtII 712 (852)
T TIGR03345 645 KGSPPGYV--------GYGEGGVLTEAVRRKPYS----VVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVI 712 (852)
T ss_pred CCCCCCCC--------CCCCCCHHHHHHHHCCCE----EEEECHHHHCCHHHHHHHHHHHCCCEEECCCCCEEECEEEEE
T ss_conf 38999766--------748777210988809986----888611300288999999987246777579999884521299
Q ss_pred EEEECCCC
Q ss_conf 66506754
Q 537021.9.peg.4 140 IFATTEIR 147 (369)
Q Consensus 140 il~t~~~~ 147 (369)
|+++ |..
T Consensus 713 ImTS-N~G 719 (852)
T TIGR03345 713 LLTS-NAG 719 (852)
T ss_pred EECC-CHH
T ss_conf 9757-244
No 130
>pfam06144 DNA_pol3_delta DNA polymerase III, delta subunit. DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction. The delta subunit is also known as HolA.
Probab=98.69 E-value=4.6e-08 Score=79.60 Aligned_cols=161 Identities=14% Similarity=0.233 Sum_probs=119.3
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 20107879888899999999961468777886658789997799997798778222453322334555665554456542
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPI 103 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~ 103 (369)
|+|+|+.-.-.......+.+.+.-... . -.++..+|+.. . .+-++.+.+.-.|.
T Consensus 1 Yll~G~e~~l~~~~~~~i~~~~~~~~~-~---------------------~~n~~~~d~~~-~---~~~~i~~~~~t~sl 54 (172)
T pfam06144 1 YLLYGEDPFLLEETKDQILKAALDQGF-E---------------------DFNYIYFDLEE-D---WADDVLEECETLPF 54 (172)
T ss_pred CEEECCCHHHHHHHHHHHHHHHHCCCC-C---------------------EEEEEEECCCC-C---CHHHHHHHHCCCCC
T ss_conf 979728599999999999999737997-3---------------------03689862776-6---69999999728998
Q ss_pred CCCCCEEEEECHHH----CCCCHHHHHHHHHHHCCCCCCEEEEECC-C---CCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 04652377511566----4800167899999721221114665067-5---43303567543332102454001356787
Q 537021.9.peg.4 104 SARFRVYIMDEVQM----LSTAAFNGLLKTLEEPPPHVKFIFATTE-I---RKIPITVLSRCQRFDLHRISIGDLIELFT 175 (369)
Q Consensus 104 ~~~~kv~iid~a~~----m~~~a~NaLLK~lEEPp~~~~fil~t~~-~---~~ll~TI~SRcq~~~f~~l~~~~i~~~L~ 175 (369)
-|++|+++|..+.. .+......|.+.++.||+++++|+.++. + .++...+.+-+..+.|.+++..++..|+.
T Consensus 55 F~~~rlvii~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lv~~~~~~~~~~~k~~k~l~k~~~~i~~~~~~~~~l~~wi~ 134 (172)
T pfam06144 55 FSDKRIVILNNPNLKESKLNEKLLKRLEEYLSNPPEDTLLIIEAPGKLDERKKLTKLLKKKATVVECFTLKEEELIQWIQ 134 (172)
T ss_pred CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHH
T ss_conf 88976999977642445553999999999983699872899983674136788899998376699934898789999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCC
Q ss_conf 64310134562566445653167642001100011
Q 537021.9.peg.4 176 KILQEESIEFDPEAVAMIARASDGSARDGLSLLDQ 210 (369)
Q Consensus 176 ~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq 210 (369)
+.+...|+++++++++.++...+||++.+-+-+|+
T Consensus 135 ~~~~~~g~~i~~~a~~~L~~~~g~nl~~l~~EieK 169 (172)
T pfam06144 135 KRAKELGLKIEKDALQLLAEKVENNLLAIAQELEK 169 (172)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHH
T ss_conf 99998499989999999999978489999999997
No 131
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=98.66 E-value=1.4e-07 Score=76.15 Aligned_cols=127 Identities=23% Similarity=0.377 Sum_probs=86.7
Q ss_pred CCCHHHHHHHHHHHHHCCC--------CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHC-
Q ss_conf 9284899999999998287--------6706201078798888999999999614687778866587899977999977-
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGR--------IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIR- 71 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~--------~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~- 71 (369)
|=||+.+++.|..+|+.-| ---+|||+||.|||||-+||.||+.|.-+=-.+|. ..=..=+.|+.
T Consensus 499 IfGQD~AI~~lv~aiK~SrAGl~~~nkP~GSFLF~GPTGVGKTElak~LA~~LGv~l~RFDM------SEYmEKHTVsRL 572 (774)
T TIGR02639 499 IFGQDEAIEQLVSAIKRSRAGLGEPNKPVGSFLFVGPTGVGKTELAKQLAEELGVHLLRFDM------SEYMEKHTVSRL 572 (774)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCHHCCCCC------HHHHHHHHHHHH
T ss_conf 15158999999999999874247788816888864798962578899999970820010465------044689999874
Q ss_pred -CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC-----------CCCCE
Q ss_conf -987782224533223345556655544565420465237751156648001678999997212-----------21114
Q 537021.9.peg.4 72 -GNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP-----------PHVKF 139 (369)
Q Consensus 72 -~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp-----------~~~~f 139 (369)
|+-|-+ .|.||==-|.+-++..|+. |.++||.|+=.++=.|-||=+|.--. .||+.
T Consensus 573 IGsPPGY--------VGfEqGGLLT~AvrK~P~c----VLLLDEIEKAHpDI~NILLQVMD~AtLTDN~GrKaDFRNVIL 640 (774)
T TIGR02639 573 IGSPPGY--------VGFEQGGLLTDAVRKHPHC----VLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVIL 640 (774)
T ss_pred HCCCCCC--------CCCCCCCCCHHHHCCCCCE----EEHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEECCEEE
T ss_conf 1688885--------1316777212233128853----542346666313366678766335434058885763113688
Q ss_pred EEEECC
Q ss_conf 665067
Q 537021.9.peg.4 140 IFATTE 145 (369)
Q Consensus 140 il~t~~ 145 (369)
|+|+|-
T Consensus 641 IMTSNa 646 (774)
T TIGR02639 641 IMTSNA 646 (774)
T ss_pred EECCCC
T ss_conf 840370
No 132
>TIGR00602 rad24 checkpoint protein rad24; InterPro: IPR004582 To be effective as a mechanism that preserves genomic integrity, the DNA damage checkpoint must be extremely sensitive in its ability to detect DNA damage. In Saccharomyces cerevisiae the Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components which may promote checkpoint activation by "sensing" DNA damage directly . Rad24 shares sequence homology with RF-c, a protein that recognises DNA template/RNA primer hybrids during DNA replication. The Ddc1 complex has structural homology to proliferating-cell nuclear antigen (PCNA), which clamps onto DNA and confers processivity to DNA polymerases delta and epsilon. Rad24 is postulated to recognise DNA lesions and then recruit the Ddc1 complex to generate checkpoint signals. ; GO: 0006281 DNA repair, 0007049 cell cycle, 0005634 nucleus.
Probab=98.66 E-value=6.2e-07 Score=71.30 Aligned_cols=189 Identities=17% Similarity=0.246 Sum_probs=108.1
Q ss_pred EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCC-CCCCCCCCCCCCCCCHHHHHHHHH----
Q ss_conf 062010787988889999999996146877788665878999779999779-877822245332233455566555----
Q 537021.9.peg.4 22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRG-NHVDVVELDAASHTSIDDVREIID---- 96 (369)
Q Consensus 22 ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~-~~~d~~e~~~~s~~~id~ir~l~~---- 96 (369)
--+|++||+||||+|+.++|||.|-..-.++.-|+.--...-+.-.....+ .+..+-++ | -++.-.++..
T Consensus 119 s~LLi~GPsGCgKsT~~k~LsKelg~~~~ew~Np~~~~~~~n~~k~~~~~~~~f~~~PY~---s--q~e~f~efll~a~k 193 (670)
T TIGR00602 119 SILLITGPSGCGKSTTIKILSKELGIKVQEWLNPVLLKEQKNDEKDTLSLESKFSRFPYL---S--QIEVFSEFLLRATK 193 (670)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEECCCC---C--HHHHHHHHHHHHHH
T ss_conf 378841755884478999998886445655407878888851244442125402216763---1--45546787642123
Q ss_pred --HHHHH--HHCCCCCEEEEECHHHCC-----C--CHHHHHHH--HHHHCCCC-CCEEEEECC---------C-----CC
Q ss_conf --44565--420465237751156648-----0--01678999--99721221-114665067---------5-----43
Q 537021.9.peg.4 97 --QIYYK--PISARFRVYIMDEVQMLS-----T--AAFNGLLK--TLEEPPPH-VKFIFATTE---------I-----RK 148 (369)
Q Consensus 97 --~~~~~--p~~~~~kv~iid~a~~m~-----~--~a~NaLLK--~lEEPp~~-~~fil~t~~---------~-----~~ 148 (369)
++++. -..++.|+|+|||.=.+| . .++.-.|+ ...+|--. .+||++-.+ . ..
T Consensus 194 Y~~lQ~lG~~~~~~kk~Il~e~lPhln~F~~d~~rr~~~~vlr~~~~~~g~~pPlv~~~te~~~~nlegdNnq~kfGir~ 273 (670)
T TIGR00602 194 YNKLQKLGDDLQTDKKLILVEDLPHLNKFYRDLDRRALREVLRTKYVSEGRLPPLVIIITESELNNLEGDNNQDKFGIRL 273 (670)
T ss_pred HHHHHHCCCCCCCCCCEEEECCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCHHCCCCC
T ss_conf 46664214110247545772137640221366126899999999862378988358997124344457755510104101
Q ss_pred CCH--H-----HHHHH--HHHHCCCCCCHHHHHHHHHHHHHCCCCC-------CHHHHHHHHHCCCCCCCHHHHCCCCCC
Q ss_conf 303--5-----67543--3321024540013567876431013456-------256644565316764200110001110
Q 537021.9.peg.4 149 IPI--T-----VLSRC--QRFDLHRISIGDLIELFTKILQEESIEF-------DPEAVAMIARASDGSARDGLSLLDQAI 212 (369)
Q Consensus 149 ll~--T-----I~SRc--q~~~f~~l~~~~i~~~L~~i~~~E~i~~-------d~~~l~~ia~~s~GslR~Al~lLeq~i 212 (369)
.=+ | |+--| ..+.|.|+.+.-|..+|..|+.+|+..- +...+..+...+.|++|-|++-| |..
T Consensus 274 ~F~~~~IM~~~il~~pr~~~i~FNPiapT~mkK~L~~I~~~e~~~~~~K~~~~~~~~ve~~c~~~~GDiRSAInsL-Qfs 352 (670)
T TIGR00602 274 LFPAVTIMNKEILEEPRVSNIKFNPIAPTLMKKFLNRIVTKEAKKKGEKILVPKKTSVEDLCQGESGDIRSAINSL-QFS 352 (670)
T ss_pred CCCHHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHH-HHH
T ss_conf 3525777526654077613100178717899998555621314346785446634689999710688478888888-864
Q ss_pred CHHH
Q ss_conf 0000
Q 537021.9.peg.4 213 ARCN 216 (369)
Q Consensus 213 ~~~~ 216 (369)
+..+
T Consensus 353 ~s~s 356 (670)
T TIGR00602 353 SSKS 356 (670)
T ss_pred HHHC
T ss_conf 3202
No 133
>PRK06620 hypothetical protein; Validated
Probab=98.62 E-value=5.1e-07 Score=71.89 Aligned_cols=178 Identities=13% Similarity=0.149 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHC---CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 48999999999982---876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 4 QKPMIKTLTNAFKS---GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 4 q~~~~~~l~~~~~~---~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
++.+++.+.+.-.. +-....++++||+|+|||-++.++++.-++.- +
T Consensus 24 N~~A~~~i~~wp~~~~~~~~~~~l~I~Gp~gSGKTHL~~i~~~~~~a~~------------------------------~ 73 (214)
T PRK06620 24 NDQAYNIIKNWQCMFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYI------------------------------I 73 (214)
T ss_pred HHHHHHHHHHCHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEE------------------------------E
T ss_conf 9999999983630256686555599987999988999999999828588------------------------------1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECC-CCC-CCHHHHHHH-
Q ss_conf 53322334555665554456542046523775115664800167899999721221114665067-543-303567543-
Q 537021.9.peg.4 81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTE-IRK-IPITVLSRC- 157 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~-~~~-ll~TI~SRc- 157 (369)
+... -.++ ....+.++|||++|..+..+.=.|...+-| .+..++++++. |.. .+|=.+||-
T Consensus 74 ~~~~--~~~~------------~~~~~~~~iiddid~~~e~~lfhlfN~~~~--~~~~llits~~~p~~~~L~DL~SRl~ 137 (214)
T PRK06620 74 KDIF--FNEE------------ILEKYNAFIIEDIENWQEPALLHIFNIINE--KQKYLLLTSSDKSRNFTLPDLSSRIK 137 (214)
T ss_pred CHHH--CCHH------------HHHHCCCEEEECCCCCCHHHHHHHHHHHHH--CCCEEEEEECCCCCCCCCCCHHHHHH
T ss_conf 5121--4587------------884379379846775746799999999971--59879998279852245357899985
Q ss_pred --HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCC---CCCHHHCCCCHHHHHHC
Q ss_conf --33210245400135678764310134562566445653167642001100011---10000001210322000
Q 537021.9.peg.4 158 --QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQ---AIARCNDKIVTSSVRLM 227 (369)
Q Consensus 158 --q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq---~i~~~~~~i~~e~v~~l 227 (369)
..+.+.+++++.+...|.+.+...++.++++.++.|+..-+-|++.+..++++ .......+||..-+.++
T Consensus 138 ~~~~~~i~~PdD~l~~~ll~k~~~~r~i~i~~~vi~yl~~ri~Rs~~~l~~~v~~ld~~sl~~kr~Iti~likev 212 (214)
T PRK06620 138 SVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLVKEV 212 (214)
T ss_pred CCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 464433269898999999999999869988755999999985178999999999999999983999889999998
No 134
>KOG0742 consensus
Probab=98.58 E-value=6.3e-07 Score=71.22 Aligned_cols=142 Identities=23% Similarity=0.283 Sum_probs=92.8
Q ss_pred HHHHHHCCCCCE----EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 999998287670----6201078798888999999999614687778866587899977999977987782224533223
Q 537021.9.peg.4 11 LTNAFKSGRIAQ----SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHT 86 (369)
Q Consensus 11 l~~~~~~~~~~h----a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~ 86 (369)
|..+-.+-+.++ ..||+||||+|||.+||.+|+.- +-.+ .+..|. ||--+ +.-
T Consensus 370 lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S----GlDY--------------A~mTGG--DVAPl---G~q 426 (630)
T KOG0742 370 LAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS----GLDY--------------AIMTGG--DVAPL---GAQ 426 (630)
T ss_pred HHHHHCCCCCCCCHHHHEEEECCCCCCHHHHHHHHHHHC----CCCE--------------EHHCCC--CCCCC---HHH
T ss_conf 988740430024304400324799986049999998852----8741--------------001378--75552---178
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEECHHHC---------C---CCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH
Q ss_conf 34555665554456542046523775115664---------8---00167899999721221114665067543303567
Q 537021.9.peg.4 87 SIDDVREIIDQIYYKPISARFRVYIMDEVQML---------S---TAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVL 154 (369)
Q Consensus 87 ~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m---------~---~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~ 154 (369)
+|-.|.++.++.+.+ - +--+.+|||||.+ + +.|-||||=---+-....+.+|+|+.|+.+=..+-
T Consensus 427 aVTkiH~lFDWakkS-~--rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~ 503 (630)
T KOG0742 427 AVTKIHKLFDWAKKS-R--RGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVN 503 (630)
T ss_pred HHHHHHHHHHHHHHC-C--CCEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 899999987887515-6--6449986116789987520102588999998898762565542689960588321016787
Q ss_pred HHH-HHHHCCCCCCHHHHHHHHHHH
Q ss_conf 543-332102454001356787643
Q 537021.9.peg.4 155 SRC-QRFDLHRISIGDLIELFTKIL 178 (369)
Q Consensus 155 SRc-q~~~f~~l~~~~i~~~L~~i~ 178 (369)
-|. +.+.|+-+-.++=...|...+
T Consensus 504 DRide~veFpLPGeEERfkll~lYl 528 (630)
T KOG0742 504 DRIDEVVEFPLPGEEERFKLLNLYL 528 (630)
T ss_pred HHHHHHEECCCCCHHHHHHHHHHHH
T ss_conf 6555413068997789999999999
No 135
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.56 E-value=5.4e-07 Score=71.70 Aligned_cols=140 Identities=19% Similarity=0.269 Sum_probs=84.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHH-------CCCCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf 928489999999999828767062010787988889999999996-------1468777886658789997799997798
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSL-------NYKTAHIDVPTVEFEGFGEHCQAIIRGN 73 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l-------~c~~~~~~~~~~~~c~~c~~c~~i~~~~ 73 (369)
||||+.++..|.=+..+..++| .|+.||+|+|||++||.|+.-| .|.-.. ..+..|+.|.......
T Consensus 10 IvGQe~~K~AL~laav~p~~gg-vLi~G~~GtgKStlaR~l~~iLP~~~~~e~~~~~~------~~~~~~~~~~~~~~~~ 82 (334)
T PRK13407 10 IVGQEEMKQAMVLTAIDPGIGG-VLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNS------ARPEDCPEWAEVSSTT 82 (334)
T ss_pred HCCCHHHHHHHHHHHCCCCCCE-EEEECCCCCCHHHHHHHHHHHCCCCCHHCCCCCCC------CCCCCCHHHHHCCCCC
T ss_conf 6493999999999772789860-89978998659999999997289951103675566------7742113343114555
Q ss_pred ----CCCCCCC-CCCCC----CCHHHHHHHHH-HHHHHH---HCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCC-----
Q ss_conf ----7782224-53322----33455566555-445654---204652377511566480016789999972122-----
Q 537021.9.peg.4 74 ----HVDVVEL-DAASH----TSIDDVREIID-QIYYKP---ISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPP----- 135 (369)
Q Consensus 74 ----~~d~~e~-~~~s~----~~id~ir~l~~-~~~~~p---~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~----- 135 (369)
..-++++ -+++. .++|--+.+.. ...+.| ..+.+-|..+||...+...-.|+||-.+|+---
T Consensus 83 ~~~~~~p~v~lPl~atedr~~G~ldie~al~~G~~~~~PGlLa~Ah~GVLylDEinll~~~vld~Ll~~~e~G~~~IeRe 162 (334)
T PRK13407 83 MVERPTPVIDLPLGATEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVERE 162 (334)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEEEC
T ss_conf 34489987678999998664474218888626987788605434028867872053333889999998871695799977
Q ss_pred ------CCCEEEE-ECCCC
Q ss_conf ------1114665-06754
Q 537021.9.peg.4 136 ------HVKFIFA-TTEIR 147 (369)
Q Consensus 136 ------~~~fil~-t~~~~ 147 (369)
.+.|+|+ |-||+
T Consensus 163 g~s~~~ParF~LVatmNPe 181 (334)
T PRK13407 163 GLSIRHPARFVLVGSGNPE 181 (334)
T ss_pred CEEEECCCCCEEEEEECCC
T ss_conf 6346036626589820888
No 136
>KOG0733 consensus
Probab=98.55 E-value=4.6e-07 Score=72.26 Aligned_cols=159 Identities=25% Similarity=0.295 Sum_probs=96.2
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-
Q ss_conf 7062010787988889999999996146877788665878999779999779877822245332233455566555445-
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIY- 99 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~- 99 (369)
|...||+||||||||.+|+++|..|--.--.... -.|..| +.|. +=+.||++-+.+.
T Consensus 223 prGvLlHGPPGCGKT~lA~AiAgel~vPf~~isA------------peivSG-------vSGE---SEkkiRelF~~A~~ 280 (802)
T KOG0733 223 PRGVLLHGPPGCGKTSLANAIAGELGVPFLSISA------------PEIVSG-------VSGE---SEKKIRELFDQAKS 280 (802)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCEEEECC------------HHHHCC-------CCCC---CHHHHHHHHHHHHC
T ss_conf 9751644899864789999975212885485141------------465315-------5752---28999999998736
Q ss_pred HHHHCCCCCEEEEECHHHCCCCHHH-----------HHHHHHHHCC------CCCCEEEEECCCCCCCHHHHHHHHHH--
Q ss_conf 6542046523775115664800167-----------8999997212------21114665067543303567543332--
Q 537021.9.peg.4 100 YKPISARFRVYIMDEVQMLSTAAFN-----------GLLKTLEEPP------PHVKFIFATTEIRKIPITVLSRCQRF-- 160 (369)
Q Consensus 100 ~~p~~~~~kv~iid~a~~m~~~a~N-----------aLLK~lEEPp------~~~~fil~t~~~~~ll~TI~SRcq~~-- 160 (369)
++| =|++|||.|..+..-.+ -||-.|.|+. ..|+.|-+|+.|+.|=|.+| |-=+|
T Consensus 281 ~aP-----civFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLR-RaGRFdr 354 (802)
T KOG0733 281 NAP-----CIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALR-RAGRFDR 354 (802)
T ss_pred CCC-----EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCHHHH-CCCCCCC
T ss_conf 697-----5998511001364404578899999999999851002566668997699824789765587773-2565532
Q ss_pred --HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCC
Q ss_conf --102454001356787643101345625664456531676420011000
Q 537021.9.peg.4 161 --DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLL 208 (369)
Q Consensus 161 --~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lL 208 (369)
-+.-++...=...|+.+|..-.+..+ =....||++.-|=++.-|..|
T Consensus 355 EI~l~vP~e~aR~~IL~~~~~~lrl~g~-~d~~qlA~lTPGfVGADL~AL 403 (802)
T KOG0733 355 EICLGVPSETAREEILRIICRGLRLSGD-FDFKQLAKLTPGFVGADLMAL 403 (802)
T ss_pred EEEECCCCHHHHHHHHHHHHHHCCCCCC-CCHHHHHHCCCCCCCHHHHHH
T ss_conf 3530689668899999999862777877-689999751887521419999
No 137
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.54 E-value=2.9e-07 Score=73.67 Aligned_cols=206 Identities=19% Similarity=0.251 Sum_probs=112.1
Q ss_pred CCCHHHHHHHHHHHHHCC-CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHHC--CCCCC
Q ss_conf 928489999999999828-767062010787988889999999996146877788665-87899977999977--98778
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSG-RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV-EFEGFGEHCQAIIR--GNHVD 76 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~-~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~-~~c~~c~~c~~i~~--~~~~d 76 (369)
+||+....+.+.+.+..= .-....|++|+.|+||..+||++-.. +...+.|-+ --|+.-+. ..+.+ ..|
T Consensus 145 lig~S~~m~~v~~~i~~~A~s~~~VLI~GEsGTGKe~~Ar~IH~~----S~r~~~pFv~vnc~ai~~-~l~eseLFG~-- 217 (457)
T PRK11361 145 ILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYN----SRRAKGPFIKVNCAALPE-SLLESELFGH-- 217 (457)
T ss_pred CEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH----CCCCCCCEEEEECCCCCH-HHHHHHHHCC--
T ss_conf 454699999999999998488995899889985789999999983----798899838764787985-7789997187--
Q ss_pred CCCCCCCCCCCHHHHH-HHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC-----------CCCCCEEEEEC
Q ss_conf 2224533223345556-65554456542046523775115664800167899999721-----------22111466506
Q 537021.9.peg.4 77 VVELDAASHTSIDDVR-EIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP-----------PPHVKFIFATT 144 (369)
Q Consensus 77 ~~e~~~~s~~~id~ir-~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP-----------p~~~~fil~t~ 144 (369)
| .++ -+|.+.-| -+.+ .++.=.+++||.+.|+...|..||+.||+- +.++.+|.+|+
T Consensus 218 --~-kga-ftga~~~~~G~~e-------~A~gGTLfLdeI~~l~~~~Q~kLLr~L~~~~~~~~g~~~~~~~dvRiIaaT~ 286 (457)
T PRK11361 218 --E-KGA-FTGAQTLRQGLFE-------RANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATN 286 (457)
T ss_pred --C-CCC-CCCCCCCCCCCHH-------HCCCCCEECCCHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEECCEEEECCC
T ss_conf --6-678-7885314698613-------3599826314664523999999999986492785699713665348996578
Q ss_pred CC-CC------CCHHHHHHHHH--HHCCCCCC--HHHHH----HHHHHHHHCCC---CCCHHHHHHH-HHCCCCCCCHHH
Q ss_conf 75-43------30356754333--21024540--01356----78764310134---5625664456-531676420011
Q 537021.9.peg.4 145 EI-RK------IPITVLSRCQR--FDLHRISI--GDLIE----LFTKILQEESI---EFDPEAVAMI-ARASDGSARDGL 205 (369)
Q Consensus 145 ~~-~~------ll~TI~SRcq~--~~f~~l~~--~~i~~----~L~~i~~~E~i---~~d~~~l~~i-a~~s~GslR~Al 205 (369)
.. .. +-+-.-.|-.. +.++|+.. ++|.. +|.+.+.+.+. .+++++++.+ .+-.-||+|.--
T Consensus 287 ~~L~~~v~~g~Fr~DLyyrL~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvREL~ 366 (457)
T PRK11361 287 RDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELS 366 (457)
T ss_pred CCHHHHHHCCCCHHHHHHHHCEEEEECCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHH
T ss_conf 78599987583238899530221251738545875499999999999999749998988999999995699997999999
Q ss_pred HCCCCCCCHHHCC-CCHHHH
Q ss_conf 0001110000001-210322
Q 537021.9.peg.4 206 SLLDQAIARCNDK-IVTSSV 224 (369)
Q Consensus 206 ~lLeq~i~~~~~~-i~~e~v 224 (369)
+.+++++..+.+. |+.+++
T Consensus 367 n~ierav~~~~~~~i~~~~l 386 (457)
T PRK11361 367 NVIERAVVMNSGPIIFSEDL 386 (457)
T ss_pred HHHHHHHHHCCCCCCCHHHC
T ss_conf 99999998289981566768
No 138
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.51 E-value=2.6e-07 Score=74.02 Aligned_cols=197 Identities=26% Similarity=0.402 Sum_probs=113.6
Q ss_pred CCCHHHHHHHHHHHHHC---CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 92848999999999982---876706201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKS---GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV 77 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~---~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~ 77 (369)
+||....-+.++..++. +..| .|+.|++|+||..+|+.+.+ + +... ...|-+.. +|-.+..+ . -.
T Consensus 80 LIG~~~~~~~~~eqik~~ap~~~~--vLi~GetGtGKel~A~~iH~-~-s~r~-~~~PFI~~-----NCa~~~en-~-~~ 147 (403)
T COG1221 80 LIGESPSLQELREQIKAYAPSGLP--VLIIGETGTGKELFARLIHA-L-SARR-AEAPFIAF-----NCAAYSEN-L-QE 147 (403)
T ss_pred HHCCCHHHHHHHHHHHHHCCCCCC--EEEECCCCCCHHHHHHHHHH-H-HHCC-CCCCEEEE-----EHHHHCCC-H-HH
T ss_conf 635688899999999861899984--79866887538899999998-6-1213-58987997-----77773767-7-77
Q ss_pred CCC----CCCCCCCHHHHH-HHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHH-----------CCCCCCEEE
Q ss_conf 224----533223345556-6555445654204652377511566480016789999972-----------122111466
Q 537021.9.peg.4 78 VEL----DAASHTSIDDVR-EIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEE-----------PPPHVKFIF 141 (369)
Q Consensus 78 ~e~----~~~s~~~id~ir-~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEE-----------Pp~~~~fil 141 (369)
.|+ .|| -+|-+.-| -+.+ .++-...++||.|+|....|-.||++||| .|.+|.+|.
T Consensus 148 ~eLFG~~kGa-ftGa~~~k~Glfe-------~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~ 219 (403)
T COG1221 148 AELFGHEKGA-FTGAQGGKAGLFE-------QANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLIC 219 (403)
T ss_pred HHHHCCCCCE-EECCCCCCCCHHE-------ECCCCEEEHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCEEEE
T ss_conf 7773200000-0256678676420-------5279777656365379858999999987186576688888677740451
Q ss_pred EECC--CCCCCH--HHHHHHHHHH--CCCCCC--HHHHHHHH----HHHHHCCCC---CCHHHH-HHHHHCCCCCCCHHH
Q ss_conf 5067--543303--5675433321--024540--01356787----643101345---625664-456531676420011
Q 537021.9.peg.4 142 ATTE--IRKIPI--TVLSRCQRFD--LHRISI--GDLIELFT----KILQEESIE---FDPEAV-AMIARASDGSARDGL 205 (369)
Q Consensus 142 ~t~~--~~~ll~--TI~SRcq~~~--f~~l~~--~~i~~~L~----~i~~~E~i~---~d~~~l-~~ia~~s~GslR~Al 205 (369)
+|+. ++.++. |...|+-.+. ++|+.. .||...+. ..+.+-+.. ..++++ .++.....||+|.-.
T Consensus 220 AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELk 299 (403)
T COG1221 220 ATTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELK 299 (403)
T ss_pred CCCCCHHHHHHHHCCHHHHHCCCEECCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHH
T ss_conf 35668799987405255641675431897243555599999999999999739998888899999998488998399999
Q ss_pred HCCCCCCCHHHC
Q ss_conf 000111000000
Q 537021.9.peg.4 206 SLLDQAIARCND 217 (369)
Q Consensus 206 ~lLeq~i~~~~~ 217 (369)
|..+.+++.+..
T Consensus 300 N~Ve~~~~~~~~ 311 (403)
T COG1221 300 NLVERAVAQASG 311 (403)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999997354
No 139
>KOG0738 consensus
Probab=98.50 E-value=2.8e-06 Score=66.48 Aligned_cols=167 Identities=24% Similarity=0.270 Sum_probs=105.2
Q ss_pred CCCHHHHHHHHHHHHH----------CCCCC-EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 9284899999999998----------28767-062010787988889999999996146877788665878999779999
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFK----------SGRIA-QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAI 69 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~----------~~~~~-ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i 69 (369)
|.|-+.+++.|+.+|. ..|=| .+.|+.||||+|||.+|+++|-. |....++
T Consensus 214 Iagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATE--c~tTFFN---------------- 275 (491)
T KOG0738 214 IAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATE--CGTTFFN---------------- 275 (491)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH--HCCEEEE----------------
T ss_conf 3164999999998875444248887424465300055679997478999999886--1672787----------------
Q ss_pred HCCCCCCCCCCCCCCCC-C--HHHHHHHHHHHH-HHHHCCCCCEEEEECHHHCCCC------------HHHHHH------
Q ss_conf 77987782224533223-3--455566555445-6542046523775115664800------------167899------
Q 537021.9.peg.4 70 IRGNHVDVVELDAASHT-S--IDDVREIIDQIY-YKPISARFRVYIMDEVQMLSTA------------AFNGLL------ 127 (369)
Q Consensus 70 ~~~~~~d~~e~~~~s~~-~--id~ir~l~~~~~-~~p~~~~~kv~iid~a~~m~~~------------a~NaLL------ 127 (369)
|---+-.|+- | =.=||-|-+-+. |.|+ +|+|||.|.+..+ --+-||
T Consensus 276 -------VSsstltSKwRGeSEKlvRlLFemARfyAPS-----tIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~ 343 (491)
T KOG0738 276 -------VSSSTLTSKWRGESEKLVRLLFEMARFYAPS-----TIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGV 343 (491)
T ss_pred -------ECHHHHHHHHCCCHHHHHHHHHHHHHHHCCC-----EEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf -------4024565553252699999999999874885-----3533567788725798650367888888999986334
Q ss_pred -HHHHHCCCCCCEEEEECC-CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
Q ss_conf -999721221114665067-543303567543332102454001356787643101345625664456531676
Q 537021.9.peg.4 128 -KTLEEPPPHVKFIFATTE-IRKIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDG 199 (369)
Q Consensus 128 -K~lEEPp~~~~fil~t~~-~~~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~G 199 (369)
+++|. ..++|+|++|| |=.|=+..|-|--.==+-|+|..+-...|-+++-.+-..-++-.++.||..++|
T Consensus 344 ~~t~e~--~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eG 415 (491)
T KOG0738 344 QGTLEN--SKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEG 415 (491)
T ss_pred CCCCCC--CEEEEEEECCCCCCCHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCC
T ss_conf 444456--516999843689820579999987630331287878999999976235668887569999998568
No 140
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.49 E-value=2.3e-06 Score=67.09 Aligned_cols=206 Identities=19% Similarity=0.241 Sum_probs=115.3
Q ss_pred CCCHHHHHHHHHHHHHC-CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCHHHHHHHC--CCCCC
Q ss_conf 92848999999999982-87670620107879888899999999961468777886658-7899977999977--98778
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKS-GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVE-FEGFGEHCQAIIR--GNHVD 76 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~-~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~-~c~~c~~c~~i~~--~~~~d 76 (369)
+||+..+.+.+.+.+.. .+.....|++|+.|+||..+|+++= ..+.....|.+. -|+.-+. ..+.. ..|
T Consensus 140 liG~S~~m~~v~~~i~~~a~~~~pVLI~GE~GTGK~~~Ar~IH----~~S~r~~~pfi~vnC~~~~~-~~~e~eLFG~-- 212 (469)
T PRK10923 140 IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH----RHSPRAKAPFIALNMAAIPK-DLIESELFGH-- 212 (469)
T ss_pred CEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHH----HCCCCCCCCCEEEECCCCCH-HHHHHHHHCC--
T ss_conf 5468999999999999985889978998989826999999999----74887799957876788997-7899997087--
Q ss_pred CCCCCCCCCCCHHHHH-HHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC-----------CCCCCEEEEEC
Q ss_conf 2224533223345556-65554456542046523775115664800167899999721-----------22111466506
Q 537021.9.peg.4 77 VVELDAASHTSIDDVR-EIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP-----------PPHVKFIFATT 144 (369)
Q Consensus 77 ~~e~~~~s~~~id~ir-~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP-----------p~~~~fil~t~ 144 (369)
+ .++ -+|.++.+ -+.+ ++..=.+++||.+.|+.+.|..||..||+- +.++.+|.+|+
T Consensus 213 --~-~ga-f~ga~~~~~g~~e-------~a~~GTLfLdeI~~L~~~~Q~kLl~~L~~~~~~~~g~~~~~~~d~RiIaat~ 281 (469)
T PRK10923 213 --E-KGA-FTGANTIRQGRFE-------QADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATH 281 (469)
T ss_pred --C-CCC-CCCCCCCCCCCHH-------HCCCCCEEHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCEEEECCEEEEECC
T ss_conf --6-678-7886424587366-------4389926566366489999999999985593785799851221437997078
Q ss_pred CC-------CCCCHHHHHHHH--HHHCCCCCC--HHHHHH----HHHHHHHCC---CCCCHHHHHHH-HHCCCCCCCHHH
Q ss_conf 75-------433035675433--321024540--013567----876431013---45625664456-531676420011
Q 537021.9.peg.4 145 EI-------RKIPITVLSRCQ--RFDLHRISI--GDLIEL----FTKILQEES---IEFDPEAVAMI-ARASDGSARDGL 205 (369)
Q Consensus 145 ~~-------~~ll~TI~SRcq--~~~f~~l~~--~~i~~~----L~~i~~~E~---i~~d~~~l~~i-a~~s~GslR~Al 205 (369)
.. +.+.+-+--|-. .+.++|+.. ++|... |.+.+...+ ..+++++++.+ .+-.-||+|.--
T Consensus 282 ~~L~~~v~~g~Fr~dLyyrL~~~~I~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~ 361 (469)
T PRK10923 282 QNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361 (469)
T ss_pred CCHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHH
T ss_conf 79999866081779999864424015846544653499999999999999859997878999999997499998799999
Q ss_pred HCCCCCCCHHHC-CCCHHHH
Q ss_conf 000111000000-1210322
Q 537021.9.peg.4 206 SLLDQAIARCND-KIVTSSV 224 (369)
Q Consensus 206 ~lLeq~i~~~~~-~i~~e~v 224 (369)
+.+++++..+.+ .++.+++
T Consensus 362 n~ier~~~~~~~~~i~~~dl 381 (469)
T PRK10923 362 NTCRWLTVMAAGQEVLIQDL 381 (469)
T ss_pred HHHHHHHHHCCCCCCCHHHC
T ss_conf 99999998579982547757
No 141
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.48 E-value=6.9e-07 Score=70.93 Aligned_cols=198 Identities=15% Similarity=0.214 Sum_probs=105.5
Q ss_pred CCCHHHHHHHHHHHHH-CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHHC---CCCC
Q ss_conf 9284899999999998-28767062010787988889999999996146877788665-87899977999977---9877
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFK-SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV-EFEGFGEHCQAIIR---GNHV 75 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~-~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~-~~c~~c~~c~~i~~---~~~~ 75 (369)
+||+....+.+...+. -.+-....|++|.+|+||..+|+++-.. +.....|-+ --|..-+. ..+.. |.
T Consensus 8 liG~S~~m~~v~~~~~~~A~~~~pVLI~GE~GtGK~~~Ar~IH~~----S~r~~~pfi~v~C~~l~~-~~~e~~LFG~-- 80 (325)
T PRK11608 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL----SSRWQGPFISLNCAALNE-NLLDSELFGH-- 80 (325)
T ss_pred CEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHC----CCCCCCCCEEEECCCCCH-HHHHHHHCCC--
T ss_conf 858999999999999999688999898898983799999999965----886799977887798997-7889987277--
Q ss_pred CCCCCCCCCCCCHHH-HHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC-----------CCCCCEEEEE
Q ss_conf 822245332233455-5665554456542046523775115664800167899999721-----------2211146650
Q 537021.9.peg.4 76 DVVELDAASHTSIDD-VREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP-----------PPHVKFIFAT 143 (369)
Q Consensus 76 d~~e~~~~s~~~id~-ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP-----------p~~~~fil~t 143 (369)
+..+. ++... -..+. --..| =.+++|+.+.|+...|..||+.||+. +.++.+|-+|
T Consensus 81 ---~~g~~--~~~~~~~~g~l-----e~a~g--GTL~L~eI~~l~~~~Q~~Ll~~l~~~~~~r~g~~~~~~~~~RiIa~t 148 (325)
T PRK11608 81 ---EAGAF--TGAQKRHPGRF-----ERADG--GTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCAT 148 (325)
T ss_pred ---CCCCC--CCCCCCCCCHH-----HCCCC--CEEEEECHHHCCHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEECC
T ss_conf ---55676--77532468734-----35689--86997374547999999999998649088579987665646887133
Q ss_pred CC-CCCCC------HHHHHHH--HHHHCCCCCC--HHHHH----HHHHHHHHCCC----CCCHHHHHHH-HHCCCCCCCH
Q ss_conf 67-54330------3567543--3321024540--01356----78764310134----5625664456-5316764200
Q 537021.9.peg.4 144 TE-IRKIP------ITVLSRC--QRFDLHRISI--GDLIE----LFTKILQEESI----EFDPEAVAMI-ARASDGSARD 203 (369)
Q Consensus 144 ~~-~~~ll------~TI~SRc--q~~~f~~l~~--~~i~~----~L~~i~~~E~i----~~d~~~l~~i-a~~s~GslR~ 203 (369)
+. +..+. +-.-.|- ..+.++|+.. ++|.. ++.+.+...+. .+++++++.+ .+-.-||+|.
T Consensus 149 ~~~l~~lv~~g~fr~dLy~rL~~~~I~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrE 228 (325)
T PRK11608 149 NADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRE 228 (325)
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHH
T ss_conf 22089999839567999856530111586845471019999999999999982999888889999999961999965999
Q ss_pred HHHCCCCCCCHHHC
Q ss_conf 11000111000000
Q 537021.9.peg.4 204 GLSLLDQAIARCND 217 (369)
Q Consensus 204 Al~lLeq~i~~~~~ 217 (369)
--+.+++++....+
T Consensus 229 L~n~ierav~~~~~ 242 (325)
T PRK11608 229 LKNVVERSVYRHGT 242 (325)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999985688
No 142
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.47 E-value=1.5e-06 Score=68.41 Aligned_cols=197 Identities=15% Similarity=0.234 Sum_probs=111.0
Q ss_pred CCCHHHHHHHHHHHHH-CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHHCCCCCCCC
Q ss_conf 9284899999999998-28767062010787988889999999996146877788665-878999779999779877822
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFK-SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV-EFEGFGEHCQAIIRGNHVDVV 78 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~-~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~-~~c~~c~~c~~i~~~~~~d~~ 78 (369)
|||+....+.+....+ --...-..|++|..|+||..+|+++- ..+.....|-. --|+.-+. ++.
T Consensus 206 iig~S~~m~~v~~~a~r~A~~d~pVLI~GEsGTGKellAraIH----~~S~R~~~pFv~vnC~alp~----------~l~ 271 (513)
T PRK10820 206 IVAVSPKMKHVVEQARKLAMLSAPLLITGDTGTGKDLFAYACH----LASPRAKKPYLALNCASIPE----------DAV 271 (513)
T ss_pred HEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHH----HCCCCCCCCCEEEECCCCCH----------HHH
T ss_conf 5108999999999999985989988998989824999999999----66887899826888998996----------789
Q ss_pred C--CCC---CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC-----------CCCCCEEEE
Q ss_conf 2--453---322334555665554456542046523775115664800167899999721-----------221114665
Q 537021.9.peg.4 79 E--LDA---ASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP-----------PPHVKFIFA 142 (369)
Q Consensus 79 e--~~~---~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP-----------p~~~~fil~ 142 (369)
| +-| .++.|. +. .+..-.+++||.+.|+.+.|-.||+.|+|. |-++.+|-+
T Consensus 272 eseLFG~a~~~~~G~-----------fe--~A~gGTLfLdEI~~l~~~~Q~kLLr~Lq~~~~~rvG~~~~~~~dvRiIaa 338 (513)
T PRK10820 272 ESELFGHAPEGKKGF-----------FE--QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICA 338 (513)
T ss_pred HHHHCCCCCCCCCCC-----------EE--ECCCCEEEEECHHHCCHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEEC
T ss_conf 998638766688975-----------57--85898899978365999999999999868979965998535677899962
Q ss_pred ECCC-CC------CCHHHHHHH--HHHHCCCCCC--HHHH----HHHHHHHHHCCC---CCCHHHHHHH-HHCCCCCCCH
Q ss_conf 0675-43------303567543--3321024540--0135----678764310134---5625664456-5316764200
Q 537021.9.peg.4 143 TTEI-RK------IPITVLSRC--QRFDLHRISI--GDLI----ELFTKILQEESI---EFDPEAVAMI-ARASDGSARD 203 (369)
Q Consensus 143 t~~~-~~------ll~TI~SRc--q~~~f~~l~~--~~i~----~~L~~i~~~E~i---~~d~~~l~~i-a~~s~GslR~ 203 (369)
|+.. .. +-+-.--|- ..+.++|+.. ++|. .++.+.+.+.|. .++++++..+ .+-.-||+|.
T Consensus 339 T~~dL~~lv~~g~FReDLyyRL~v~~I~lPpLReR~eDI~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNVRE 418 (513)
T PRK10820 339 TQKNLVELVQKGLFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLSADLSTVLTRYGWPGNVRQ 418 (513)
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHH
T ss_conf 65309999872985088999861672558883446556999999999999997599989847999999970899979999
Q ss_pred HHHCCCCCCCHHHC-CCCHHHH
Q ss_conf 11000111000000-1210322
Q 537021.9.peg.4 204 GLSLLDQAIARCND-KIVTSSV 224 (369)
Q Consensus 204 Al~lLeq~i~~~~~-~i~~e~v 224 (369)
--|.+++++..+++ .++.+++
T Consensus 419 L~n~iera~~~~~g~~i~~~di 440 (513)
T PRK10820 419 LKNAIYRALTQLEGYELRPQDI 440 (513)
T ss_pred HHHHHHHHHHHCCCCCCCHHHC
T ss_conf 9999999999579985349982
No 143
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=3.9e-06 Score=65.42 Aligned_cols=135 Identities=21% Similarity=0.351 Sum_probs=92.3
Q ss_pred CCCHHHHHHHHHHHHHCCCC--------CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHC-
Q ss_conf 92848999999999982876--------706201078798888999999999614687778866587899977999977-
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRI--------AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIR- 71 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~--------~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~- 71 (369)
||||+++++.+.++|+..|. --++||.||.|+|||-+|+++|..|+-...... ..+- ..-..-+.++.
T Consensus 493 ViGQd~AV~~v~~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~ali--R~DM-SEy~EkHsVSrL 569 (786)
T COG0542 493 VIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALI--RIDM-SEYMEKHSVSRL 569 (786)
T ss_pred EECHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCE--EECH-HHHHHHHHHHHH
T ss_conf 0173999999999999985699999987357886678865699999999999659974445--5456-877778779987
Q ss_pred -CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC-----------CCCCE
Q ss_conf -987782224533223345556655544565420465237751156648001678999997212-----------21114
Q 537021.9.peg.4 72 -GNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP-----------PHVKF 139 (369)
Q Consensus 72 -~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp-----------~~~~f 139 (369)
|.-|-+ .|-|+=-.|.+.++.+||+ |+++||.|+=.++-+|-||-.|+.-- .||++
T Consensus 570 IGaPPGY--------VGyeeGG~LTEaVRr~PyS----ViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiI 637 (786)
T COG0542 570 IGAPPGY--------VGYEEGGQLTEAVRRKPYS----VILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTII 637 (786)
T ss_pred HCCCCCC--------CEECCCCCHHHHHHCCCCE----EEEECHHHHCCHHHHHHHHHHHCCCCEECCCCCEEECCEEEE
T ss_conf 2799987--------2006554003766069986----888412644088999999998467805548998884300289
Q ss_pred EEEECCCCCCC
Q ss_conf 66506754330
Q 537021.9.peg.4 140 IFATTEIRKIP 150 (369)
Q Consensus 140 il~t~~~~~ll 150 (369)
|+++|--...+
T Consensus 638 ImTSN~Gs~~i 648 (786)
T COG0542 638 IMTSNAGSEEI 648 (786)
T ss_pred EEECCCCHHHH
T ss_conf 98450265989
No 144
>KOG0743 consensus
Probab=98.45 E-value=6.6e-07 Score=71.07 Aligned_cols=137 Identities=20% Similarity=0.364 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHCC----CCC----EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 9999999999828----767----06201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4 6 PMIKTLTNAFKSG----RIA----QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV 77 (369)
Q Consensus 6 ~~~~~l~~~~~~~----~~~----ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~ 77 (369)
.|+.-|..+++.. |++ -.||++||||+||+|+.-++|..|++. +
T Consensus 212 ~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~yd----------------------------I 263 (457)
T KOG0743 212 RIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYD----------------------------I 263 (457)
T ss_pred HHHHHHHHHHHCCHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCC----------------------------E
T ss_conf 999999999722357886484500041204799998889999997205873----------------------------6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHC---CC---------------CHHHHHHHHHHHCCCCC--
Q ss_conf 22453322334555665554456542046523775115664---80---------------01678999997212211--
Q 537021.9.peg.4 78 VELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQML---ST---------------AAFNGLLKTLEEPPPHV-- 137 (369)
Q Consensus 78 ~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m---~~---------------~a~NaLLK~lEEPp~~~-- 137 (369)
.-++-++...=++.|.|+-.. |. .-|++|++.|.= +. -+.-.||..+.=.-..+
T Consensus 264 ydLeLt~v~~n~dLr~LL~~t---~~---kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ 337 (457)
T KOG0743 264 YDLELTEVKLDSDLRHLLLAT---PN---KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGD 337 (457)
T ss_pred EEEEECCCCCCHHHHHHHHHC---CC---CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHCCCCCCCCC
T ss_conf 774400236838999999728---99---718999612432304434555664546776606647756641343004887
Q ss_pred --CEEEEECCCCCCCHHHHH--HH-HHHHCCCCCCHHHHHHHHH
Q ss_conf --146650675433035675--43-3321024540013567876
Q 537021.9.peg.4 138 --KFIFATTEIRKIPITVLS--RC-QRFDLHRISIGDLIELFTK 176 (369)
Q Consensus 138 --~fil~t~~~~~ll~TI~S--Rc-q~~~f~~l~~~~i~~~L~~ 176 (369)
++||+|+.++||=|++.= |. -++.+.-.+.+.......+
T Consensus 338 ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~n 381 (457)
T KOG0743 338 ERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASN 381 (457)
T ss_pred CEEEEEECCCHHHCCHHHCCCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 34999946871006886628875225667266987999999998
No 145
>PRK09087 hypothetical protein; Validated
Probab=98.45 E-value=2.2e-06 Score=67.26 Aligned_cols=181 Identities=12% Similarity=0.149 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 48999999999982876706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4 4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA 83 (369)
Q Consensus 4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~ 83 (369)
++.++..+.+ ....--+ ...++||.|+|||-++.++++.-++.. +++
T Consensus 29 N~~a~~~l~~-~~~w~~~-~~~L~Gp~gsGKTHL~~~~~~~~~a~~------------------------------~~~- 75 (226)
T PRK09087 29 NRAAVSLVDR-WPNWPSP-VVVLAGPVGSGKTHLASIWREKADALL------------------------------VHP- 75 (226)
T ss_pred HHHHHHHHHH-CCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCEE------------------------------ECH-
T ss_conf 9999999984-7267777-589989999988699999999809968------------------------------366-
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC-CCCCEEEEECC-CCC---CCHHHHHHH-
Q ss_conf 223345556655544565420465237751156648001678999997212-21114665067-543---303567543-
Q 537021.9.peg.4 84 SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP-PHVKFIFATTE-IRK---IPITVLSRC- 157 (369)
Q Consensus 84 s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp-~~~~fil~t~~-~~~---ll~TI~SRc- 157 (369)
.....+ . . .....+.++||++|....+ ..+|.-++.+-- .+..+++++.. |.. -+|=.+||.
T Consensus 76 ~~~~~~----~---~----~~~~~~~~~idd~d~~~~d-Ee~LFhl~N~~~~~~~~LLlts~~~p~~l~~~L~DL~SRL~ 143 (226)
T PRK09087 76 NEIGSD----A---A----NAAAERPVLIEDIDAGGFD-ETGLFHLINSVRQAGTSLLMTSRLWPSAWNVKLPDLKSRLK 143 (226)
T ss_pred HHCCHH----H---H----HHHCCCCEEEECCCCCCCC-HHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHH
T ss_conf 874746----6---7----6532798899748777747-89999999999853987999889895666762468999985
Q ss_pred --HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCC---CCCHHHCCCCHHHHHHCCC
Q ss_conf --33210245400135678764310134562566445653167642001100011---1000000121032200013
Q 537021.9.peg.4 158 --QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQ---AIARCNDKIVTSSVRLMLA 229 (369)
Q Consensus 158 --q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq---~i~~~~~~i~~e~v~~llg 229 (369)
..+.+.+++++.+...|.+.+..-|+.++++.+..|++..+=|+..+..++++ .......+||..-+.+++.
T Consensus 144 ~~~~~~I~~pdD~ll~~~L~k~~~~r~l~l~~~v~~yll~r~~Rs~~~l~~~l~~LD~~SL~~kr~ITiplikevL~ 220 (226)
T PRK09087 144 AATVVEIGEPDDALLSGVIFKLFADRQLYVEPHVVYYLVSRMERSLFAAQTIVERLDRLALERKSRITRALAAEVLN 220 (226)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 78579835999899999999998757657888899999984588999999999999999998189998999999998
No 146
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=98.44 E-value=5e-07 Score=71.95 Aligned_cols=88 Identities=19% Similarity=0.265 Sum_probs=48.7
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC---CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 2010787988889999999996146877788665878999779999779877822---2453322334555665554456
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVV---ELDAASHTSIDDVREIIDQIYY 100 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~---e~~~~s~~~id~ir~l~~~~~~ 100 (369)
.||+||+|+|||++|+.+|+.+. ..+... -.|+..-+ --|++ .+.. + +. ...+..-.
T Consensus 2 vll~Gp~G~GKT~la~~la~~l~-~~~~~~----i~~~~~~~--------~~dl~G~~~~~~-~--~~----~~~~g~l~ 61 (139)
T pfam07728 2 VLLVGPPGTGKSELAERLAAALS-NRPVFY----VQLTRDTT--------EEDLKGRRNIAN-G--TT----SWVDGPLV 61 (139)
T ss_pred EEEECCCCCHHHHHHHHHHHHCC-CCCCHH----HCCCCCCC--------HHHCCCCEECCC-C--CE----EEECCHHH
T ss_conf 89998997569999999999807-983111----21465565--------222057342379-9--35----78155141
Q ss_pred HHHCCCCCEEEEECHHHCCCCHHHHHHHHHHH
Q ss_conf 54204652377511566480016789999972
Q 537021.9.peg.4 101 KPISARFRVYIMDEVQMLSTAAFNGLLKTLEE 132 (369)
Q Consensus 101 ~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEE 132 (369)
...+ .-.|+++||.++++.+.+++|+..||+
T Consensus 62 ~a~~-~g~vl~lDEin~a~~~v~~~L~~~le~ 92 (139)
T pfam07728 62 RAAR-EGEIAVLDEINRANPDVLNSLLSLLDE 92 (139)
T ss_pred CCCC-CCCEEEECCHHHCCHHHHHHHHHHHCC
T ss_conf 0101-286899634344899999999999748
No 147
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.42 E-value=3.6e-07 Score=73.00 Aligned_cols=116 Identities=23% Similarity=0.216 Sum_probs=64.6
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 70620107879888899999999961468777886658789997799997798778222453322334555665554456
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYY 100 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~ 100 (369)
++.+++.||+|+|||++++.+|+.+.+.... +...+............ .......+.....++..++.+.+.+..
T Consensus 2 ~~~ill~G~~GsGKTtl~~~la~~~~~~~~~----v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGG----VIYIDGEDILEEVLDQL-LLIIVGGKKASGSGELRLRLALALARK 76 (148)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCCC----EEEEEHHHHHHHHHHHH-HHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9789999999702999999999872668996----89987599898889876-530001122105199999999999984
Q ss_pred HHHCCCCCEEEEECHHHCCCCHHHHHHHH--------HHHCCCCCCEEEEECC
Q ss_conf 54204652377511566480016789999--------9721221114665067
Q 537021.9.peg.4 101 KPISARFRVYIMDEVQMLSTAAFNGLLKT--------LEEPPPHVKFIFATTE 145 (369)
Q Consensus 101 ~p~~~~~kv~iid~a~~m~~~a~NaLLK~--------lEEPp~~~~fil~t~~ 145 (369)
.+ +.|++|||++.+.......++.. ...+..+..+|++++.
T Consensus 77 ~~----~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~n~ 125 (148)
T smart00382 77 LK----PDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CC----CCEEEEECCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECC
T ss_conf 49----98999827502147620799999999998517657899899995699
No 148
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.6e-07 Score=75.53 Aligned_cols=108 Identities=28% Similarity=0.384 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHHHHH-------HCC-C-----CCE-EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 928489999999999-------828-7-----670-62010787988889999999996146877788665878999779
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAF-------KSG-R-----IAQ-SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHC 66 (369)
Q Consensus 1 iiGq~~~~~~l~~~~-------~~~-~-----~~h-a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c 66 (369)
||||+.+++.|.-++ ..+ . +.. ..|+-||.|+|||.+|..+|+.||-.-.-.+..+.
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtL--------- 133 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTL--------- 133 (408)
T ss_pred EECCHHHHCEEEEEEEHHHHHHHCCCCCCCEEEEECCEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCH---------
T ss_conf 32625431034664106889986048877635320317998889975779999999984898475144412---------
Q ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHH----HHHHHHHHHHCCCCCEEEEECHHHCCCC--------------HHHHHHH
Q ss_conf 999779877822245332233455566----5554456542046523775115664800--------------1678999
Q 537021.9.peg.4 67 QAIIRGNHVDVVELDAASHTSIDDVRE----IIDQIYYKPISARFRVYIMDEVQMLSTA--------------AFNGLLK 128 (369)
Q Consensus 67 ~~i~~~~~~d~~e~~~~s~~~id~ir~----l~~~~~~~p~~~~~kv~iid~a~~m~~~--------------a~NaLLK 128 (369)
-. |+-.| |++.+ |+..+-|--..+.+-|+.|||.|+..+- -|.||||
T Consensus 134 --TE------------AGYVG-EDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSen~SITRDVSGEGVQQALLK 198 (408)
T COG1219 134 --TE------------AGYVG-EDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLK 198 (408)
T ss_pred --HH------------CCCCC-HHHHHHHHHHHHHCCCCHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf --10------------66355-0089999999987645888882885998510254205789872343673589999999
Q ss_pred HHHH
Q ss_conf 9972
Q 537021.9.peg.4 129 TLEE 132 (369)
Q Consensus 129 ~lEE 132 (369)
.+|-
T Consensus 199 iiEG 202 (408)
T COG1219 199 IIEG 202 (408)
T ss_pred HHCC
T ss_conf 9707
No 149
>pfam01078 Mg_chelatase Magnesium chelatase, subunit ChlI. Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Probab=98.41 E-value=1.4e-06 Score=68.62 Aligned_cols=114 Identities=23% Similarity=0.275 Sum_probs=64.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHC--CC-----
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977--98-----
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIR--GN----- 73 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~--~~----- 73 (369)
|+||+.++..|.-+..-+ |.+|+.||||+|||++|+.++.-|- .. ... +.-.+..|.+ |.
T Consensus 5 i~GQ~~akrAl~iAaaG~---H~lLl~GpPG~GKTmlA~rl~~iLP----~l-----~~~-e~le~~~i~S~~g~~~~~~ 71 (207)
T pfam01078 5 VKGQEQAKRALEIAAAGG---HNLLMIGPPGSGKTMLAKRLPGILP----PL-----TEQ-EALEVTAIHSVAGLGGDGG 71 (207)
T ss_pred HCCCHHHHHHHHHHHCCC---CCEEEECCCCCCHHHHHHHHHCCCC----CC-----CHH-HHHHHHHHHCCCCCCCCCC
T ss_conf 638599999999985478---7589788998029999976301489----98-----789-9887776423036877777
Q ss_pred ---CCCCCCCCCCCCCCHHHHHHHHHH-HHHHH---HCCCCCEEEEECHHHCCCCHHHHHHHHHHH
Q ss_conf ---778222453322334555665554-45654---204652377511566480016789999972
Q 537021.9.peg.4 74 ---HVDVVELDAASHTSIDDVREIIDQ-IYYKP---ISARFRVYIMDEVQMLSTAAFNGLLKTLEE 132 (369)
Q Consensus 74 ---~~d~~e~~~~s~~~id~ir~l~~~-~~~~p---~~~~~kv~iid~a~~m~~~a~NaLLK~lEE 132 (369)
++-+... |.++- ...++.. ...+| +.+..=|.++||+..++....++|+.-||+
T Consensus 72 l~~~rPfr~P----Hhs~s-~~aliGGg~~~~PGeIslAH~GVLFLDE~~Ef~~~vle~LrqpLE~ 132 (207)
T pfam01078 72 LIRRRPFRAP----HHSAS-AAALVGGGSIPRPGEISLAHNGVLFLDELPEFSRRVLESLRQPLED 132 (207)
T ss_pred CCCCCCCCCC----CCCCC-HHHCCCCCCCCCCCCEEECCCCEEEECCHHHCCHHHHHHHHHHHCC
T ss_conf 4457986578----87643-6332268888999706663687888476465398899999876604
No 150
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=98.38 E-value=6.3e-07 Score=71.21 Aligned_cols=111 Identities=30% Similarity=0.436 Sum_probs=70.8
Q ss_pred CCCHHHHHHHHHHHH----------HCC-C-----------------C--CEEEHHCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 928489999999999----------828-7-----------------6--706201078798888999999999614687
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAF----------KSG-R-----------------I--AQSYMLSGTRGIGKTTTARIIARSLNYKTA 50 (369)
Q Consensus 1 iiGq~~~~~~l~~~~----------~~~-~-----------------~--~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~ 50 (369)
||||+++++.|.=|| ++| + | +. .|+-||.|+|||.+|..||+.||-.-.
T Consensus 103 VIGQe~AKKVLsVAVYNHYKRl~~~~~n~~~d~~D~nvelehleeVEL~KSN-ILLiGPTGSGKTLLAqTLA~~L~VPfA 181 (452)
T TIGR00382 103 VIGQEQAKKVLSVAVYNHYKRLNLKEKNKKSDNGDSNVELEHLEEVELSKSN-ILLIGPTGSGKTLLAQTLARILNVPFA 181 (452)
T ss_pred CCCCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 1231010525432411246665324304555884000235444443330066-245468885268999999987388742
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH----HHHHHHHHHHCCCCCEEEEECHHHCC-------
Q ss_conf 7788665878999779999779877822245332233455566----55544565420465237751156648-------
Q 537021.9.peg.4 51 HIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVRE----IIDQIYYKPISARFRVYIMDEVQMLS------- 119 (369)
Q Consensus 51 ~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~----l~~~~~~~p~~~~~kv~iid~a~~m~------- 119 (369)
-.+.-+.. . |+=-| |||-+ |+..+-|--..+.+=|+.|||.|+.+
T Consensus 182 iADATtLT-----------E------------AGYVG-EDVENIL~~Llq~ad~DV~kA~kGIiYIDEIDKIaRkSEN~S 237 (452)
T TIGR00382 182 IADATTLT-----------E------------AGYVG-EDVENILLKLLQAADYDVEKAQKGIIYIDEIDKIARKSENPS 237 (452)
T ss_pred ECCHHHHH-----------C------------CCCCC-CCHHHHHHHHHHHCCCCHHHHCCCEEEEECCCCHHHHCCCCE
T ss_conf 11111020-----------0------------66424-228899999987414552452785089842231012157780
Q ss_pred -------CCHHHHHHHHHHH-----CCCC
Q ss_conf -------0016789999972-----1221
Q 537021.9.peg.4 120 -------TAAFNGLLKTLEE-----PPPH 136 (369)
Q Consensus 120 -------~~a~NaLLK~lEE-----Pp~~ 136 (369)
+.-|.||||.+|= ||.+
T Consensus 238 ITRDVSGEGVQQALLKi~EGTvA~vPPqG 266 (452)
T TIGR00382 238 ITRDVSGEGVQQALLKIIEGTVANVPPQG 266 (452)
T ss_pred EEEEECCCHHHHHHHHHHHCCEEEECCCC
T ss_conf 11221755499999987603234317544
No 151
>KOG2227 consensus
Probab=98.38 E-value=6.3e-07 Score=71.22 Aligned_cols=200 Identities=18% Similarity=0.196 Sum_probs=115.1
Q ss_pred HHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC-CCCCCCCC
Q ss_conf 99999999982876706201078798888999999999614687778866587899977999977987782-22453322
Q 537021.9.peg.4 7 MIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV-VELDAASH 85 (369)
Q Consensus 7 ~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~-~e~~~~s~ 85 (369)
+...+++.+..+. +-++-.+|-||+||+.+-..+=..+-|+..... .+.-.|-+-..-..+..+.|-.+ .+..+ ..
T Consensus 162 v~~F~~~hle~~t-~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~-~v~inc~sl~~~~aiF~kI~~~~~q~~~s-~~ 238 (529)
T KOG2227 162 VREFFSLHLELNT-SGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPV-TVYINCTSLTEASAIFKKIFSSLLQDLVS-PG 238 (529)
T ss_pred HHHHHHHHHHCCC-CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCE-EEEEEECCCCCHHHHHHHHHHHHHHHHCC-CC
T ss_conf 9999985431266-764575179986548899999874034316651-69985123542588999998889887428-95
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC---CCCCCEEEEECCC---CCCCHHHHHHH--
Q ss_conf 334555665554456542046523775115664800167899999721---2211146650675---43303567543--
Q 537021.9.peg.4 86 TSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP---PPHVKFIFATTEI---RKIPITVLSRC-- 157 (369)
Q Consensus 86 ~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP---p~~~~fil~t~~~---~~ll~TI~SRc-- 157 (369)
.+.+..+.+....... ...=|++.||-|.+-...+-+|.-..|=| ..+.+.|-+++.. +++||++.+||
T Consensus 239 ~~~~~~~~~~~h~~q~---k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~ 315 (529)
T KOG2227 239 TGMQHLEKFEKHTKQS---KFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTI 315 (529)
T ss_pred HHHHHHHHHHHHHHCC---CCEEEEEECHHHHHHHCCCCEEEEEHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCC
T ss_conf 0478999999987525---6338987212567760465314321001367766056664001355777776665402578
Q ss_pred --HHHHCCCCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHH---CCCCCCCHHHHCCCCCC
Q ss_conf --332102454001356787643101345-62566445653---16764200110001110
Q 537021.9.peg.4 158 --QRFDLHRISIGDLIELFTKILQEESIE-FDPEAVAMIAR---ASDGSARDGLSLLDQAI 212 (369)
Q Consensus 158 --q~~~f~~l~~~~i~~~L~~i~~~E~i~-~d~~~l~~ia~---~s~GslR~Al~lLeq~i 212 (369)
+.+.|+|.+.++|...|.+-+..+... +-+.+++++|+ ..-|++|+||-+.-.++
T Consensus 316 ~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227 316 KPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 8746655687889999999999740544333038999999986257612899999998788
No 152
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.37 E-value=4.6e-06 Score=64.82 Aligned_cols=163 Identities=21% Similarity=0.247 Sum_probs=103.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHH-------CCCCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf 928489999999999828767062010787988889999999996-------1468777886658789997799997798
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSL-------NYKTAHIDVPTVEFEGFGEHCQAIIRGN 73 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l-------~c~~~~~~~~~~~~c~~c~~c~~i~~~~ 73 (369)
++||+.....|--....-++.-+ |+.|++|+||||+||++|.-| .|.-+-.. . +|-..|+.|+.-....
T Consensus 19 ivGqd~lk~aL~l~av~P~iggv-LI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP--~-~P~~~c~~c~~k~~e~ 94 (423)
T COG1239 19 IVGQDPLKLALGLNAVDPQIGGA-LIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDP--D-DPEEMCDECRAKGDEL 94 (423)
T ss_pred HCCCHHHHHHHHHHHCCCCCCEE-EEECCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCC--C-CHHHHHHHHHHHCCCC
T ss_conf 43753777887653026310426-876688752779999999867963321688788998--8-7055519998620232
Q ss_pred CCCC----CC------CCCCCC----CCHHHHHHHHHH-HHHHH---HCCCCCEEEEECHHHCCCCHHHHHHHHHHHC--
Q ss_conf 7782----22------453322----334555665554-45654---2046523775115664800167899999721--
Q 537021.9.peg.4 74 HVDV----VE------LDAASH----TSIDDVREIIDQ-IYYKP---ISARFRVYIMDEVQMLSTAAFNGLLKTLEEP-- 133 (369)
Q Consensus 74 ~~d~----~e------~~~~s~----~~id~ir~l~~~-~~~~p---~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP-- 133 (369)
-++ .. .++++. .++|=++-+.+. -.|.| .++.+-|+.|||.-.+...=+|+||-.++|-
T Consensus 95 -~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~n 173 (423)
T COG1239 95 -EWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVN 173 (423)
T ss_pred -CCCCCCCEECCEECCCCCCCHHHHCCCCCHHHHHHCCCCCCCCCCHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf -4454221003122388763043300456799997268300277511003588798723343518999999999971774
Q ss_pred ---------CCCCCEEEE-ECCCC--CCCHHHHHH-HHHHHCCCCCCH
Q ss_conf ---------221114665-06754--330356754-333210245400
Q 537021.9.peg.4 134 ---------PPHVKFIFA-TTEIR--KIPITVLSR-CQRFDLHRISIG 168 (369)
Q Consensus 134 ---------p~~~~fil~-t~~~~--~ll~TI~SR-cq~~~f~~l~~~ 168 (369)
+-..-|+|+ |.||+ .|-|.++-| -..+...+++.-
T Consensus 174 ~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~ 221 (423)
T COG1239 174 DVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDL 221 (423)
T ss_pred EEEECCEEECCCCCEEEEEECCCCCCCCCHHHHHHHCCEEECCCCCCH
T ss_conf 033575031367617999644854466324667541115623478878
No 153
>KOG0734 consensus
Probab=98.35 E-value=2.6e-06 Score=66.68 Aligned_cols=151 Identities=22% Similarity=0.330 Sum_probs=89.7
Q ss_pred CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 28767062010787988889999999996146877788665878999779999779877822245332233455566555
Q 537021.9.peg.4 17 SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIID 96 (369)
Q Consensus 17 ~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~ 96 (369)
-|++|...|++||||+|||.+||+.|-. .+. |.. +.+|+-.|=..+ --|.-.||+|-.
T Consensus 333 GGKLPKGVLLvGPPGTGKTlLARAvAGE----A~V---PFF-----------~~sGSEFdEm~V----GvGArRVRdLF~ 390 (752)
T KOG0734 333 GGKLPKGVLLVGPPGTGKTLLARAVAGE----AGV---PFF-----------YASGSEFDEMFV----GVGARRVRDLFA 390 (752)
T ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHCC----CCC---CEE-----------ECCCCCHHHHHH----CCCHHHHHHHHH
T ss_conf 4758885387689997556999986055----689---747-----------416620445422----014899999999
Q ss_pred HHHHHHHCCCCCEEEEECHHHC-----------CCCHHHHHHHHHHHC--CCCCCEEEEECCCCCCCHHHHHHHH----H
Q ss_conf 4456542046523775115664-----------800167899999721--2211146650675433035675433----3
Q 537021.9.peg.4 97 QIYYKPISARFRVYIMDEVQML-----------STAAFNGLLKTLEEP--PPHVKFIFATTEIRKIPITVLSRCQ----R 159 (369)
Q Consensus 97 ~~~~~p~~~~~kv~iid~a~~m-----------~~~a~NaLLK~lEEP--p~~~~fil~t~~~~~ll~TI~SRcq----~ 159 (369)
.+.-+. .-||+|||.|.. .++.-|-||--|.-. -+.+++|-+|+-|+.|=+.+. |-= +
T Consensus 391 aAk~~A----PcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~-RPGRFD~~ 465 (752)
T KOG0734 391 AAKARA----PCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALT-RPGRFDRH 465 (752)
T ss_pred HHHHCC----CEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHC-CCCCCCEE
T ss_conf 987349----8599972002205667862778999899999998428676886699951687455568734-88755336
Q ss_pred HHCCCCCC---HHH-HHHHHHHHHHCCCCCCHHHHHHHHHCCCC
Q ss_conf 21024540---013-56787643101345625664456531676
Q 537021.9.peg.4 160 FDLHRISI---GDL-IELFTKILQEESIEFDPEAVAMIARASDG 199 (369)
Q Consensus 160 ~~f~~l~~---~~i-~~~L~~i~~~E~i~~d~~~l~~ia~~s~G 199 (369)
+..+.++- .+| ..||.+|...+++ |+ ..||+-.-|
T Consensus 466 v~Vp~PDv~GR~eIL~~yl~ki~~~~~V--D~---~iiARGT~G 504 (752)
T KOG0734 466 VTVPLPDVRGRTEILKLYLSKIPLDEDV--DP---KIIARGTPG 504 (752)
T ss_pred EECCCCCCCCHHHHHHHHHHCCCCCCCC--CH---HHHCCCCCC
T ss_conf 7468977332899999998348765677--87---672268898
No 154
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=98.35 E-value=5.4e-07 Score=71.70 Aligned_cols=85 Identities=28% Similarity=0.372 Sum_probs=49.5
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC---CCCCCCCCHHHHHHHHHHHH
Q ss_conf 620107879888899999999961468777886658789997799997798778222---45332233455566555445
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVE---LDAASHTSIDDVREIIDQIY 99 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e---~~~~s~~~id~ir~l~~~~~ 99 (369)
-.|+.||||+|||++|+.+|+.+...-.... |. ++ -.--|++- .+... + +. ...
T Consensus 1 hVLL~GppG~GKT~l~~~lA~~~~~~~~~i~------~~-~~-------~~~~Dl~G~~~~~~~~--~-----~~--~~~ 57 (131)
T pfam07726 1 HVLLEGVPGLAKTLLARTLARSLGLDFRRIQ------FT-PD-------LLPSDITGTEVYDQKT--R-----EF--EFR 57 (131)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHCCCCEEEE------EC-CC-------CCCCCCCCCEEECCCC--C-----EE--EEE
T ss_conf 9878989987699999999999599816888------33-77-------6700036845423787--4-----08--984
Q ss_pred HHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHH
Q ss_conf 654204652377511566480016789999972
Q 537021.9.peg.4 100 YKPISARFRVYIMDEVQMLSTAAFNGLLKTLEE 132 (369)
Q Consensus 100 ~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEE 132 (369)
-.|.-+ .|+++||.++++.+.+|+||-.|+|
T Consensus 58 ~G~l~~--~vl~lDEin~a~~~v~~~Ll~~l~e 88 (131)
T pfam07726 58 PGPIFA--NVLLADEINRAPPKTQSALLEAMQE 88 (131)
T ss_pred CCCCCC--CCEEEEHHHCCCHHHHHHHHHHHHC
T ss_conf 573103--7056401203998999999976326
No 155
>KOG1514 consensus
Probab=98.34 E-value=1.6e-05 Score=60.90 Aligned_cols=191 Identities=21% Similarity=0.335 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999998287670620107879888899999999961468777886658789997799997798778222453322
Q 537021.9.peg.4 6 PMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASH 85 (369)
Q Consensus 6 ~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~ 85 (369)
.|-..++-++...-.+-++-.+|-||+|||.+.+..-+.|.-...+...| -.+++||+|--=
T Consensus 407 ~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p------------------~f~yveINgm~l 468 (767)
T KOG1514 407 EIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELP------------------KFDYVEINGLRL 468 (767)
T ss_pred HHHHHHHHHCCCCCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHCCCC------------------CCCEEEECCEEE
T ss_conf 99999997627777740799846999883212999999999877505789------------------860798714461
Q ss_pred CCHHHHH------------------HHHHHHHHH-HHC-CCCCEEEEECHHHCCCCHHHHHHHHHHHCCC---CCCEEEE
Q ss_conf 3345556------------------655544565-420-4652377511566480016789999972122---1114665
Q 537021.9.peg.4 86 TSIDDVR------------------EIIDQIYYK-PIS-ARFRVYIMDEVQMLSTAAFNGLLKTLEEPPP---HVKFIFA 142 (369)
Q Consensus 86 ~~id~ir------------------~l~~~~~~~-p~~-~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~---~~~fil~ 142 (369)
.+-+++= +.++ .++. |-. .+--|++|||.|.|=...|.-|--+++=|.. ..+.|-+
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~-~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~I 547 (767)
T KOG1514 469 ASPREIYEKIWEALSGERVTWDAALEALN-FRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAI 547 (767)
T ss_pred CCHHHHHHHHHHHCCCCCCCHHHHHHHHH-HHHCCCCCCCCCEEEEECCHHHHHCCCHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 58899999999975557430778899998-65416787878779996357877352098897774077678986699995
Q ss_pred ECC---CCCCCH-HHHHHH--HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHC---CCCCCCHHHHCCCCCCC
Q ss_conf 067---543303-567543--332102454001356787643101345625664456531---67642001100011100
Q 537021.9.peg.4 143 TTE---IRKIPI-TVLSRC--QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARA---SDGSARDGLSLLDQAIA 213 (369)
Q Consensus 143 t~~---~~~ll~-TI~SRc--q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~---s~GslR~Al~lLeq~i~ 213 (369)
++. |++++. -|-||- +++.|.|.+.+++.+.+..-+..- -.++.++.+++|+. --||.|+|+.+.+++.-
T Consensus 548 aNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~E 626 (767)
T KOG1514 548 ANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAAE 626 (767)
T ss_pred CCCCCCHHHHHCCCHHHHCCCEEEECCCCCHHHHHHHHHHHCCCH-HHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 165647798854311233065055137788999999999860315-4314248999998877504227888899899999
Q ss_pred HHH
Q ss_conf 000
Q 537021.9.peg.4 214 RCN 216 (369)
Q Consensus 214 ~~~ 216 (369)
.++
T Consensus 627 ia~ 629 (767)
T KOG1514 627 IAE 629 (767)
T ss_pred HHH
T ss_conf 754
No 156
>KOG0731 consensus
Probab=98.34 E-value=1.6e-05 Score=60.92 Aligned_cols=126 Identities=23% Similarity=0.348 Sum_probs=75.3
Q ss_pred CCCHHHHHHHHHHHHH-----------CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 9284899999999998-----------28767062010787988889999999996146877788665878999779999
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFK-----------SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAI 69 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~-----------~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i 69 (369)
|.|.+.+++.|...|. --++|+.-|++||||||||.+|++.|.. + ..|....+|
T Consensus 313 VAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGE----A---gVPF~svSG-------- 377 (774)
T KOG0731 313 VAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGE----A---GVPFFSVSG-------- 377 (774)
T ss_pred CCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCC----C---CCCEEEECH--------
T ss_conf 2670899999999999843989998747767675178789998678999988530----5---896464133--------
Q ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HHHCCCCCEEEEECHHHCC---------------CCHHHHHHHHHHH-
Q ss_conf 7798778222453322334555665554456-5420465237751156648---------------0016789999972-
Q 537021.9.peg.4 70 IRGNHVDVVELDAASHTSIDDVREIIDQIYY-KPISARFRVYIMDEVQMLS---------------TAAFNGLLKTLEE- 132 (369)
Q Consensus 70 ~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~-~p~~~~~kv~iid~a~~m~---------------~~a~NaLLK~lEE- 132 (369)
.+++|+-. .-+-.-||+|-..+.- .| -|+.|||.|... .+..|.||--|.-
T Consensus 378 -----SEFvE~~~--g~~asrvr~lf~~ar~~aP-----~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf 445 (774)
T KOG0731 378 -----SEFVEMFV--GVGASRVRDLFPLARKNAP-----SIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGF 445 (774)
T ss_pred -----HHHHHHHC--CCCHHHHHHHHHHHHCCCC-----EEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf -----78888760--3434888999987432698-----07971454200312556666788807888999887875277
Q ss_pred -CCCCCCEEEEECCCCCCCHHH
Q ss_conf -122111466506754330356
Q 537021.9.peg.4 133 -PPPHVKFIFATTEIRKIPITV 153 (369)
Q Consensus 133 -Pp~~~~fil~t~~~~~ll~TI 153 (369)
...+|+|+=.|+.|+-+=+..
T Consensus 446 ~~~~~vi~~a~tnr~d~ld~al 467 (774)
T KOG0731 446 ETSKGVIVLAATNRPDILDPAL 467 (774)
T ss_pred CCCCCEEEEECCCCCCCCCHHH
T ss_conf 6778479981168866428876
No 157
>KOG0740 consensus
Probab=98.30 E-value=8.2e-06 Score=63.01 Aligned_cols=166 Identities=22% Similarity=0.254 Sum_probs=97.5
Q ss_pred CCHHHHHHHHHHHHH-----------CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 284899999999998-----------287670620107879888899999999961468777886658789997799997
Q 537021.9.peg.4 2 IGQKPMIKTLTNAFK-----------SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAII 70 (369)
Q Consensus 2 iGq~~~~~~l~~~~~-----------~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~ 70 (369)
-|.+.+.+.|..++. -...+-++|+.||||+||+.++++.|....- ..
T Consensus 156 ~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~a--tf------------------- 214 (428)
T KOG0740 156 AGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGA--TF------------------- 214 (428)
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHEECCCCCCHHHHHHHHHHHHCC--EE-------------------
T ss_conf 405668998654232204553765235445311120058988447999999862066--57-------------------
Q ss_pred CCCCCCCCCCCCCCCCC--HH----HHHHHHHHHHHHHHCCCCCEEEEECHHHC-CCCHHH----------HHHHHH---
Q ss_conf 79877822245332233--45----55665554456542046523775115664-800167----------899999---
Q 537021.9.peg.4 71 RGNHVDVVELDAASHTS--ID----DVREIIDQIYYKPISARFRVYIMDEVQML-STAAFN----------GLLKTL--- 130 (369)
Q Consensus 71 ~~~~~d~~e~~~~s~~~--id----~ir~l~~~~~~~p~~~~~kv~iid~a~~m-~~~a~N----------aLLK~l--- 130 (369)
.-+.|+|=++ +. -||.+..-++ ...+-|++|||+|.+ ++..=| -+|=..
T Consensus 215 -------f~iSassLtsK~~Ge~eK~vralf~vAr----~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~ 283 (428)
T KOG0740 215 -------FNISASSLTSKYVGESEKLVRALFKVAR----SLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGK 283 (428)
T ss_pred -------EECCHHHHHHHCCCHHHHHHHHHHHHHH----HCCCEEEEECHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf -------6306888653246707789999999987----13970898402567886368754544555655777654044
Q ss_pred -HHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHCCCCCCHHHHHHHHHCCCC
Q ss_conf -72122111466506754330356754333210245400135-6787643101345625664456531676
Q 537021.9.peg.4 131 -EEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLI-ELFTKILQEESIEFDPEAVAMIARASDG 199 (369)
Q Consensus 131 -EEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~-~~L~~i~~~E~i~~d~~~l~~ia~~s~G 199 (369)
--|.+++++|-+|+.|..+=+.++=|-+.+-+-|+|..+-. ..+.+.+.+.+....+..+..+|+..+|
T Consensus 284 ~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Teg 354 (428)
T KOG0740 284 NSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEG 354 (428)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
T ss_conf 57888707998158883677888888710315535988789999999999768787417789999988617
No 158
>pfam05673 DUF815 Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.
Probab=98.29 E-value=1.7e-05 Score=60.59 Aligned_cols=122 Identities=23% Similarity=0.415 Sum_probs=71.8
Q ss_pred CCCHHHHHHHH---HHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 92848999999---999982876706201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4 1 MIGQKPMIKTL---TNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV 77 (369)
Q Consensus 1 iiGq~~~~~~l---~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~ 77 (369)
++|-+.-++.| ......|.-+|-.|++|.+|+||+|+.+++-.... ....-+
T Consensus 30 L~Gie~Qk~~l~~NT~~F~~G~pAnnvLLwG~RGtGKSSlVKall~~~~-------------------------~~gLrl 84 (248)
T pfam05673 30 LVGIDRQKEALLRNTEQFLAGLPANNVLLWGARGTGKSSLVKALLNEYA-------------------------DQGLRL 84 (248)
T ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHH-------------------------HCCCEE
T ss_conf 3493999999999999998089861367676898988899999999863-------------------------149569
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-EEEEECHHHCCCCHHHHHHHH-----HHHCCCCCCEEEEECCCCCCCH
Q ss_conf 2245332233455566555445654204652-377511566480016789999-----9721221114665067543303
Q 537021.9.peg.4 78 VELDAASHTSIDDVREIIDQIYYKPISARFR-VYIMDEVQMLSTAAFNGLLKT-----LEEPPPHVKFIFATTEIRKIPI 151 (369)
Q Consensus 78 ~e~~~~s~~~id~ir~l~~~~~~~p~~~~~k-v~iid~a~~m~~~a~NaLLK~-----lEEPp~~~~fil~t~~~~~ll~ 151 (369)
+|++. ..+.++-+|++.++-.| +| |+.+|+---=..++.-..||+ +|.+|+|++|.-+++--+-+++
T Consensus 85 IEv~k---~~L~~Lp~i~~~l~~~~----~kFIiF~DDLSFe~~d~~yk~LKs~LeG~l~~~p~NvliYaTSNRRHLi~e 157 (248)
T pfam05673 85 IEVDK---DDLGDLPDIVDLLRGRP----YRFILFCDDLSFEEGESSYKALKSVLEGGLEARPDNVLIYATSNRRHLIPE 157 (248)
T ss_pred EEECH---HHHCCHHHHHHHHHCCC----CCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCHHCCCH
T ss_conf 99878---88721999999996499----757999635576789736999999965764468873899984270003633
Q ss_pred HHH
Q ss_conf 567
Q 537021.9.peg.4 152 TVL 154 (369)
Q Consensus 152 TI~ 154 (369)
+-.
T Consensus 158 ~~~ 160 (248)
T pfam05673 158 YMS 160 (248)
T ss_pred HHC
T ss_conf 323
No 159
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.29 E-value=2.8e-06 Score=66.47 Aligned_cols=205 Identities=20% Similarity=0.257 Sum_probs=112.8
Q ss_pred CCCHHHHHHHHHHHHHCC-CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCHHHHHHHC--CCCCC
Q ss_conf 928489999999999828-7670620107879888899999999961468777886658-7899977999977--98778
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSG-RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVE-FEGFGEHCQAIIR--GNHVD 76 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~-~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~-~c~~c~~c~~i~~--~~~~d 76 (369)
+||+....+.+.+.+..= +-.-..|++|+.|+||..+||++-. .+.....|.+. -|+.-+. ..+.. ..|
T Consensus 141 liG~S~am~~v~~~i~~~A~s~~pVLI~GE~GTGK~~~Ar~IH~----~S~r~~~pfv~vnC~~l~~-~l~eseLFG~-- 213 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHA----SSARSEKPLVTLNCAALNE-SLLESELFGH-- 213 (441)
T ss_pred CEECCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHH----CCCCCCCCCEEEECCCCCH-HHHHHHHCCC--
T ss_conf 66689999999999999848899489989998109999999996----5787789807987898984-5558986177--
Q ss_pred CCCCCCCCCCCHHHHHH-HHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC-----------CCCCCEEEEEC
Q ss_conf 22245332233455566-5554456542046523775115664800167899999721-----------22111466506
Q 537021.9.peg.4 77 VVELDAASHTSIDDVRE-IIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP-----------PPHVKFIFATT 144 (369)
Q Consensus 77 ~~e~~~~s~~~id~ir~-l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP-----------p~~~~fil~t~ 144 (369)
+- + .-+|.+.-+. +. ..+..-.+++||.+.|+...|..||+.||+- +.++.+|.+|+
T Consensus 214 --~~-g-aftga~~~~~g~~-------~~A~gGTLfLdeI~~l~~~~Q~kLl~~l~~~~~~~~g~~~~~~~d~RiIaat~ 282 (441)
T PRK10365 214 --EK-G-AFTGADKRREGRF-------VEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATH 282 (441)
T ss_pred --CC-C-CCCCCCCCCCCCE-------EECCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEECCC
T ss_conf --55-6-8789653468987-------78899825502315299999999998777521000588734413637998378
Q ss_pred CC-CCC------CHHHHHHH--HHHHCCCCCC--HHHHH----HHHHHHHHCCC---CCCHHHHHHH-HHCCCCCCCHHH
Q ss_conf 75-433------03567543--3321024540--01356----78764310134---5625664456-531676420011
Q 537021.9.peg.4 145 EI-RKI------PITVLSRC--QRFDLHRISI--GDLIE----LFTKILQEESI---EFDPEAVAMI-ARASDGSARDGL 205 (369)
Q Consensus 145 ~~-~~l------l~TI~SRc--q~~~f~~l~~--~~i~~----~L~~i~~~E~i---~~d~~~l~~i-a~~s~GslR~Al 205 (369)
.. ... -+-.--|- ..+.++|+.. ++|.. +|.+.+.+.+. .+++++++.+ .+-.-||+|.--
T Consensus 283 ~~l~~~v~~g~Fr~dLy~rL~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvREL~ 362 (441)
T PRK10365 283 RDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 (441)
T ss_pred CCHHHHHHCCCCHHHHHHHHCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHH
T ss_conf 89999988198258999886011137826000620099999999999999849998888999999997099998999999
Q ss_pred HCCCCCCCHHHCC-CCHHH
Q ss_conf 0001110000001-21032
Q 537021.9.peg.4 206 SLLDQAIARCNDK-IVTSS 223 (369)
Q Consensus 206 ~lLeq~i~~~~~~-i~~e~ 223 (369)
+.+++++..+.+. |+.++
T Consensus 363 n~iera~~~~~~~~i~~~~ 381 (441)
T PRK10365 363 NAVERAVVLLTGEYISERE 381 (441)
T ss_pred HHHHHHHHHCCCCCCCHHH
T ss_conf 9999999957898688465
No 160
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.27 E-value=1.3e-05 Score=61.56 Aligned_cols=203 Identities=17% Similarity=0.236 Sum_probs=103.6
Q ss_pred CCCHHHHHHHH-HHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHHC---CCCC
Q ss_conf 92848999999-9999828767062010787988889999999996146877788665-87899977999977---9877
Q 537021.9.peg.4 1 MIGQKPMIKTL-TNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV-EFEGFGEHCQAIIR---GNHV 75 (369)
Q Consensus 1 iiGq~~~~~~l-~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~-~~c~~c~~c~~i~~---~~~~ 75 (369)
++|+....... ..+-+--+-.-..|+.|..|+||+++|+++-.. +.....|.+ --|+.-+. ..+.. |..
T Consensus 327 l~g~s~~~~~~~~~a~~~a~~~~pVLI~GE~GtGKe~lAraIH~~----S~r~~~pfv~vnC~ai~~-~~~e~elfG~~- 400 (639)
T PRK11388 327 MPQDSPQMRRLIHFGRQAAKSSFPILLCGEEGVGKALLAQAIHNE----SERAAGPYIAVNCQLLPD-EALAEEFLGSD- 400 (639)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHC----CCCCCCCEEEEECCCCCH-HHHHHHHCCCC-
T ss_conf 467999999999999999688996898898981099999999955----777899818987898984-67899873877-
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC-----------CCCCCEEEEEC
Q ss_conf 8222453322334555665554456542046523775115664800167899999721-----------22111466506
Q 537021.9.peg.4 76 DVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP-----------PPHVKFIFATT 144 (369)
Q Consensus 76 d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP-----------p~~~~fil~t~ 144 (369)
.++...+ ....+ ..+.--.+++||++.|..+.|..||+.|||- |-++.+|-+|+
T Consensus 401 -----~~~~~~g------~~g~~----e~A~gGTL~LdeI~~lp~~~Q~~LlrvL~~~~~~r~g~~~~~~vdvRiiaat~ 465 (639)
T PRK11388 401 -----RTDSENG------RLSKF----ELAHGGTLFLEKVEYLSVELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTT 465 (639)
T ss_pred -----CCCCCCC------CCCHH----HCCCCCEEEECCHHHCCHHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEEECC
T ss_conf -----6764346------68624----40369828846726499999999999986593785699946664279997364
Q ss_pred CC-CCC------CHHHHHHH--HHHHCCCCCC--HHHHHH----HHHHHHHC--CCCCCHHHHHHHH-HCCCCCCCHHHH
Q ss_conf 75-433------03567543--3321024540--013567----87643101--3456256644565-316764200110
Q 537021.9.peg.4 145 EI-RKI------PITVLSRC--QRFDLHRISI--GDLIEL----FTKILQEE--SIEFDPEAVAMIA-RASDGSARDGLS 206 (369)
Q Consensus 145 ~~-~~l------l~TI~SRc--q~~~f~~l~~--~~i~~~----L~~i~~~E--~i~~d~~~l~~ia-~~s~GslR~Al~ 206 (369)
.. ..+ -+-.--|- ..+.++|+.. ++|... |..+.... .+.++++++..+. +-.-||+|.--+
T Consensus 466 ~~l~~~v~~g~fr~dLyyrl~~~~i~lPpLReR~~Di~~L~~~~l~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n 545 (639)
T PRK11388 466 ADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRS 545 (639)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHH
T ss_conf 50899987498549999876744105733232534399999999999999719999989999999972899979999999
Q ss_pred CCCCCCCHHHCC-CCHHHH
Q ss_conf 001110000001-210322
Q 537021.9.peg.4 207 LLDQAIARCNDK-IVTSSV 224 (369)
Q Consensus 207 lLeq~i~~~~~~-i~~e~v 224 (369)
.+++++..+++. |+.++.
T Consensus 546 vl~~a~~~~~~~~I~~~~L 564 (639)
T PRK11388 546 VIENLALSSDNGRIRLSDL 564 (639)
T ss_pred HHHHHHHHCCCCCCCHHHC
T ss_conf 9999998389984267978
No 161
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.25 E-value=6e-05 Score=56.64 Aligned_cols=156 Identities=14% Similarity=0.270 Sum_probs=104.5
Q ss_pred EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC----------CCCCHHHH
Q ss_conf 06201078798888999999999614687778866587899977999977987782224533----------22334555
Q 537021.9.peg.4 22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA----------SHTSIDDV 91 (369)
Q Consensus 22 ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~----------s~~~id~i 91 (369)
..+.++|+.|.|||-+-.+.+..+. +. ...++++.+. .+..+++.
T Consensus 142 NPLfIyG~~GlGKTHLL~AIgn~i~-~~------------------------~~kV~Yvtae~F~~~~v~ai~~~~~~~F 196 (455)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVSALR-ES------------------------GGKILYVSSELFTEHLVSAIRSGEMQRF 196 (455)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHH-CC------------------------CCEEEEECHHHHHHHHHHHHHCCCHHHH
T ss_conf 8758878999978999999999853-79------------------------9869997499999999999975889999
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECHHHCC--CCHHHHHHHHHHHC-CCCCCEEEEECCCC----CCCHHHHHHHH---HHH
Q ss_conf 6655544565420465237751156648--00167899999721-22111466506754----33035675433---321
Q 537021.9.peg.4 92 REIIDQIYYKPISARFRVYIMDEVQMLS--TAAFNGLLKTLEEP-PPHVKFIFATTEIR----KIPITVLSRCQ---RFD 161 (369)
Q Consensus 92 r~l~~~~~~~p~~~~~kv~iid~a~~m~--~~a~NaLLK~lEEP-p~~~~fil~t~~~~----~ll~TI~SRcq---~~~ 161 (369)
|+- |+ ..-|.+|||.+.+. ...|.-|.-|+..- -.+-.+||++..+- .+-+-++||.. .+.
T Consensus 197 r~~-----yr----~~DvLLIDDIQfl~gK~~tqeEff~tfN~L~~~~KQIVitsDr~P~el~~l~~RL~SRf~~GL~v~ 267 (455)
T PRK12422 197 RSF-----YR----NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSSYAPGDLKAMEERLISRFEWGIAIP 267 (455)
T ss_pred HHH-----HH----CCCEEEEEHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCEEEC
T ss_conf 999-----96----388776314788728488999999999999985996999689895765126899998863761321
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCC
Q ss_conf 02454001356787643101345625664456531676420011000111
Q 537021.9.peg.4 162 LHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQA 211 (369)
Q Consensus 162 f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~ 211 (369)
..|++.+.....|.+-++..+++++++.++.||..-.+|+|.-...+.++
T Consensus 268 I~~Pd~etr~~Il~~k~~~~~~~l~~ev~~~iA~~i~~niReLeGal~~l 317 (455)
T PRK12422 268 IHPLTREGLRSFLMRQAEQLSIRIEETALDFLIQALSSNVKTLLHALTLL 317 (455)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 68999899999999999871888844689999999755179999999999
No 162
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.25 E-value=7.2e-06 Score=63.41 Aligned_cols=194 Identities=21% Similarity=0.255 Sum_probs=106.0
Q ss_pred CCCHHHHHHHHHHHHH---CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHHC--CCC
Q ss_conf 9284899999999998---28767062010787988889999999996146877788665-87899977999977--987
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFK---SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV-EFEGFGEHCQAIIR--GNH 74 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~---~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~-~~c~~c~~c~~i~~--~~~ 74 (369)
+|||..+.+.|++.+. ....| .|++|..|+||..+|+++=.. +...+.|-+ --|+.-+. ..+.+ ..|
T Consensus 188 lIG~S~~m~~l~~~i~~vA~sd~p--VLI~GEtGTGKelvAr~IH~~----S~R~~~Pfv~vNCaalpe-~l~EseLFGh 260 (510)
T PRK05022 188 MIGQSPAMQQLKKEIEVVAASDLN--VLITGETGVGKELVARAIHQA----SPRAVKPLVYLNCAALPE-SLAESELFGH 260 (510)
T ss_pred EEECCHHHHHHHHHHHHHHCCCCC--EEEECCCCCCHHHHHHHHHHC----CCCCCCCCEEEECCCCCH-HHHHHHHCCC
T ss_conf 520899999999999999689998--898898981399999999966----887899857888999985-6789986597
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC-----------CCCCCEEEEE
Q ss_conf 78222453322334555665554456542046523775115664800167899999721-----------2211146650
Q 537021.9.peg.4 75 VDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP-----------PPHVKFIFAT 143 (369)
Q Consensus 75 ~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP-----------p~~~~fil~t 143 (369)
..++- +|...-|. ..+. .++.-.+++||.+.|+.+.|-.||++||+- +-++.+|-+|
T Consensus 261 -----~kGaF-tGA~~~r~--G~fe----~A~gGTLfLDEI~~Lpl~~Q~KLLrvLq~g~iqrvG~~~~~~vdvRIIAAT 328 (510)
T PRK05022 261 -----VKGAF-TGAISNRS--GKFE----LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAAT 328 (510)
T ss_pred -----CCCCC-CCCCCCCC--CCEE----ECCCCEEEEECHHHCCHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEEEC
T ss_conf -----77886-88655678--8101----778987987574549999999999998479588558994666668999607
Q ss_pred CCCCCCCHHHHH---------H--HHHHHCCCCCC--HHHHH----HHHHHHHHCC---CCCCHHHHHHHHH-CCCCCCC
Q ss_conf 675433035675---------4--33321024540--01356----7876431013---4562566445653-1676420
Q 537021.9.peg.4 144 TEIRKIPITVLS---------R--CQRFDLHRISI--GDLIE----LFTKILQEES---IEFDPEAVAMIAR-ASDGSAR 202 (369)
Q Consensus 144 ~~~~~ll~TI~S---------R--cq~~~f~~l~~--~~i~~----~L~~i~~~E~---i~~d~~~l~~ia~-~s~GslR 202 (369)
+. .+-.-+.. | +..+.++|+.. ++|.. +|.+...+.| ..++++++..+.. -.-||+|
T Consensus 329 nr--dL~~~V~~G~FR~DLYyRLsv~~I~vPPLRER~eDI~lLa~~FLe~~~~~~g~~~~~ls~eAl~~L~~Y~WPGNVR 406 (510)
T PRK05022 329 NR--DLREEVLAGRFRADLYHRLSVFPLPVPPLRERGDDVLLLAGYFLEQNRLRLGLSSLRLSPDAQAALLQYDWPGNVR 406 (510)
T ss_pred CC--CHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHH
T ss_conf 83--5999988396389999876204034808655554099999999999999829898988899999997099997899
Q ss_pred HHHHCCCCCCCHH
Q ss_conf 0110001110000
Q 537021.9.peg.4 203 DGLSLLDQAIARC 215 (369)
Q Consensus 203 ~Al~lLeq~i~~~ 215 (369)
.--+.++++...+
T Consensus 407 ELenvIeRA~lla 419 (510)
T PRK05022 407 ELEHVISRAALLA 419 (510)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999971
No 163
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=7.5e-06 Score=63.28 Aligned_cols=170 Identities=20% Similarity=0.307 Sum_probs=96.9
Q ss_pred CHHHHHHHHHHHHHC-----------C-CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 848999999999982-----------8-7670620107879888899999999961468777886658789997799997
Q 537021.9.peg.4 3 GQKPMIKTLTNAFKS-----------G-RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAII 70 (369)
Q Consensus 3 Gq~~~~~~l~~~~~~-----------~-~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~ 70 (369)
|=+.-++.++.+|+- | .-|...|++||||+|||.+|++.|..-+|.--...+. .--+++
T Consensus 155 GL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgS--------ElVqKY- 225 (406)
T COG1222 155 GLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGS--------ELVQKY- 225 (406)
T ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCH--------HHHHHH-
T ss_conf 88999999999840336688899974999997127668999758899999872058669994219--------999998-
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC-----------CCHHHHHHHHHHH-----CC
Q ss_conf 7987782224533223345556655544565420465237751156648-----------0016789999972-----12
Q 537021.9.peg.4 71 RGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS-----------TAAFNGLLKTLEE-----PP 134 (369)
Q Consensus 71 ~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~-----------~~a~NaLLK~lEE-----Pp 134 (369)
| | -|--=||++-+-+.-+ ..-|++|||.|..- .+-|-.+|-.|-| |-
T Consensus 226 ---------i-G---EGaRlVRelF~lArek----aPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 226 ---------I-G---EGARLVRELFELAREK----APSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred ---------H-C---CCHHHHHHHHHHHHHC----CCEEEEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf ---------3-4---1169999999987414----984999831122311113688885099999999999860588978
Q ss_pred CCCCEEEEECCCCCCCHHHHH--HH-HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHCCCCC
Q ss_conf 211146650675433035675--43-3321024540013567876431013456256-644565316764
Q 537021.9.peg.4 135 PHVKFIFATTEIRKIPITVLS--RC-QRFDLHRISIGDLIELFTKILQEESIEFDPE-AVAMIARASDGS 200 (369)
Q Consensus 135 ~~~~fil~t~~~~~ll~TI~S--Rc-q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~-~l~~ia~~s~Gs 200 (369)
.++..|.+|+-++-|=|.+.= |- ..+.|+.++.+.=...|+ |-. -+++.+++ .++.+|+..+|.
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~-IHt-rkM~l~~dvd~e~la~~~~g~ 356 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILK-IHT-RKMNLADDVDLELLARLTEGF 356 (406)
T ss_pred CCEEEEEECCCCCCCCHHHCCCCCCCCEEECCCCCHHHHHHHHH-HHH-HHCCCCCCCCHHHHHHHCCCC
T ss_conf 87689985588555576650887545301168989789999999-876-214676676999998753899
No 164
>KOG2170 consensus
Probab=98.19 E-value=1.8e-05 Score=60.46 Aligned_cols=132 Identities=23% Similarity=0.273 Sum_probs=85.1
Q ss_pred CCCHHHHHHHHHHHHH----CC--CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH-H-HCC
Q ss_conf 9284899999999998----28--76706201078798888999999999614687778866587899977999-9-779
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFK----SG--RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQA-I-IRG 72 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~----~~--~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~-i-~~~ 72 (369)
+.||.-+++..-++++ +. +-|-.+=|+|++|+||.-.|+++|..+.-. |.-..|.. + ...
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~------------Gl~S~~V~~fvat~ 151 (344)
T KOG2170 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRG------------GLRSPFVHHFVATL 151 (344)
T ss_pred HHCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC------------CCCCHHHHHHHHHC
T ss_conf 632087999999999998628999987589830899875648999999998751------------12562688765541
Q ss_pred CCCCCCCCCCCCCCCHHHHH-HHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCC-------CCCEEEEEC
Q ss_conf 87782224533223345556-6555445654204652377511566480016789999972122-------111466506
Q 537021.9.peg.4 73 NHVDVVELDAASHTSIDDVR-EIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPP-------HVKFIFATT 144 (369)
Q Consensus 73 ~~~d~~e~~~~s~~~id~ir-~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~-------~~~fil~t~ 144 (369)
.+|+-- .|++-| +|..++.-.-....+-++|+||+|+|...=-.+|--+|+-+|. +++|||.++
T Consensus 152 hFP~~~--------~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN 223 (344)
T KOG2170 152 HFPHAS--------KIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSN 223 (344)
T ss_pred CCCCHH--------HHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECC
T ss_conf 599767--------899999999999999998557754873105435876999876663046321355455148999717
Q ss_pred CCCCCCHH
Q ss_conf 75433035
Q 537021.9.peg.4 145 EIRKIPIT 152 (369)
Q Consensus 145 ~~~~ll~T 152 (369)
--...++-
T Consensus 224 ~gg~eI~~ 231 (344)
T KOG2170 224 AGGSEIAR 231 (344)
T ss_pred CCCHHHHH
T ss_conf 86147799
No 165
>KOG0736 consensus
Probab=98.17 E-value=4.1e-05 Score=57.87 Aligned_cols=169 Identities=20% Similarity=0.343 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHCC--------CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 489999999999828--------767062010787988889999999996146877788665878999779999779877
Q 537021.9.peg.4 4 QKPMIKTLTNAFKSG--------RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHV 75 (369)
Q Consensus 4 q~~~~~~l~~~~~~~--------~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~ 75 (369)
++..+..+.+.+.-. ++.-+.|++|++|+||+++.+++|+.|--+- ... +|..+...+
T Consensus 406 ~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~--~ev----------dc~el~~~s-- 471 (953)
T KOG0736 406 LEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHL--LEV----------DCYELVAES-- 471 (953)
T ss_pred CHHHHHHHHHHHCCCCCCCHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCE--EEC----------CHHHHHHCC--
T ss_conf 027999999984865585300133553799867999875799999999838725--701----------389886436--
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHH----HHHHHHH------H---CCCCCCEEEE
Q ss_conf 8222453322334555665554456542046523775115664800167----8999997------2---1221114665
Q 537021.9.peg.4 76 DVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFN----GLLKTLE------E---PPPHVKFIFA 142 (369)
Q Consensus 76 d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~N----aLLK~lE------E---Pp~~~~fil~ 142 (369)
+++ .+.. +....+ +.-....-|+.+...|-+..++.+ -++|.++ - +-++++|+-+
T Consensus 472 -------~~~---~etk-l~~~f~-~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t 539 (953)
T KOG0736 472 -------ASH---TETK-LQAIFS-RARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVAT 539 (953)
T ss_pred -------CCH---HHHH-HHHHHH-HHHHCCCEEEEEECCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
T ss_conf -------331---3789-999999-8752686289872242455337774427799999999720235677996599996
Q ss_pred ECCCCCCCHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
Q ss_conf 067543303567543-332102454001356787643101345625664456531676
Q 537021.9.peg.4 143 TTEIRKIPITVLSRC-QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDG 199 (369)
Q Consensus 143 t~~~~~ll~TI~SRc-q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~G 199 (369)
|++.+.++++|+|-. ..+.+..++.++=.++|++....+.+.- +..++.+|+...|
T Consensus 540 ~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~-~v~~k~~a~~t~g 596 (953)
T KOG0736 540 TSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQ-DVNLKQLARKTSG 596 (953)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHCCC
T ss_conf 25302398789875265213778887889999999983065235-7787899986589
No 166
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1e-05 Score=62.32 Aligned_cols=130 Identities=22% Similarity=0.317 Sum_probs=82.1
Q ss_pred CCCHHHHHHHHHHHHH-----------CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 9284899999999998-----------28767062010787988889999999996146877788665878999779999
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFK-----------SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAI 69 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~-----------~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i 69 (369)
|.|.+.+++.|...|. -+++|.-.|+.||||+|||.+|++.|-.- +.|.
T Consensus 152 VAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-------~VPF------------- 211 (596)
T COG0465 152 VAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-------GVPF------------- 211 (596)
T ss_pred HCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHCCC-------CCCC-------------
T ss_conf 41867999999999998638556675235345652685599987278999984546-------8983-------------
Q ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HHCCCCCEEEEECHHHCC--------------CCHHHHHHHHHHHCC
Q ss_conf 77987782224533223345556655544565-420465237751156648--------------001678999997212
Q 537021.9.peg.4 70 IRGNHVDVVELDAASHTSIDDVREIIDQIYYK-PISARFRVYIMDEVQMLS--------------TAAFNGLLKTLEEPP 134 (369)
Q Consensus 70 ~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~-p~~~~~kv~iid~a~~m~--------------~~a~NaLLK~lEEPp 134 (369)
..-+-.|++|+-- --|...+|++-+.+... | =|++|||.|... .|.-|-||-.|+-..
T Consensus 212 f~iSGS~FVemfV--GvGAsRVRdLF~qAkk~aP-----~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~ 284 (596)
T COG0465 212 FSISGSDFVEMFV--GVGASRVRDLFEQAKKNAP-----CIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 284 (596)
T ss_pred EECCCHHHHHHHC--CCCCHHHHHHHHHHHCCCC-----CEEEEEHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 5303444644314--7883888999998551599-----66987634331454577889980699999988885201578
Q ss_pred CCC-CEEEEECC-CCCCCHHHHHHHH
Q ss_conf 211-14665067-5433035675433
Q 537021.9.peg.4 135 PHV-KFIFATTE-IRKIPITVLSRCQ 158 (369)
Q Consensus 135 ~~~-~fil~t~~-~~~ll~TI~SRcq 158 (369)
.+. +.++++|| |+-+-|+ ..|=-
T Consensus 285 ~~~gviviaaTNRpdVlD~A-LlRpg 309 (596)
T COG0465 285 GNEGVIVIAATNRPDVLDPA-LLRPG 309 (596)
T ss_pred CCCCEEEECCCCCCCCCHHH-HCCCC
T ss_conf 88754885267874333176-52887
No 167
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.15 E-value=0.00048 Score=50.00 Aligned_cols=182 Identities=12% Similarity=0.153 Sum_probs=95.6
Q ss_pred HHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH------HHHHHC---CCCCCCCCC
Q ss_conf 99999982876706201078798888999999999614687778866587899977------999977---987782224
Q 537021.9.peg.4 10 TLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEH------CQAIIR---GNHVDVVEL 80 (369)
Q Consensus 10 ~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~------c~~i~~---~~~~d~~e~ 80 (369)
.|.+.+....-....++++|.|.||||++.-+++.-. ...+- ..+.....+. |..+.. +.-++...+
T Consensus 21 rL~~~L~~~~~~~l~lv~APaG~GKTtl~a~w~~~~~--~~~Wl--sld~~d~~~~~f~~~l~~al~~~~~~~~~~~~~~ 96 (903)
T PRK04841 21 RLLAKLSGANNYRLVLVRSPAGYGKTTLASQWAAGKN--NVGWY--SLDESDNQPERFASYLIAALQQATNGHCSKSEAL 96 (903)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCC--CEEEE--ECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHC
T ss_conf 7999998515899799977999889999999983499--85998--5885448999999999999998565433112311
Q ss_pred -CCCCCCCHHHH-HHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHH-HHHHCCCCCCEEEEECC-CCCCCHHHHHH
Q ss_conf -53322334555-6655544565420465237751156648001678999-99721221114665067-54330356754
Q 537021.9.peg.4 81 -DAASHTSIDDV-REIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLK-TLEEPPPHVKFIFATTE-IRKIPITVLSR 156 (369)
Q Consensus 81 -~~~s~~~id~i-r~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK-~lEEPp~~~~fil~t~~-~~~ll~TI~SR 156 (369)
++.+..+++.+ .+++..+. ..++.-+++||+.|.++......+|. .++..|+++.+|+++.+ |.--+...+.+
T Consensus 97 ~~~~~~~~~~~~~~~l~~~l~---~~~~~~~lvlDD~h~i~~~~~~~~l~~Ll~~~p~~l~lvl~sR~~p~l~l~~l~~~ 173 (903)
T PRK04841 97 AEKRQYASLTSLFAQLFIELS---DWHQPLYLVLDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVR 173 (903)
T ss_pred CCCCCCCCHHHHHHHHHHHHH---CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHC
T ss_conf 355665549999999999975---58998699986836488868999999999838988389987689998752457745
Q ss_pred HHHHHCC----CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 3332102----45400135678764310134562566445653167642
Q 537021.9.peg.4 157 CQRFDLH----RISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSA 201 (369)
Q Consensus 157 cq~~~f~----~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~Gsl 201 (369)
-+.+.+. +.+.+|+..++.. .-|..++++.++.+.+.++|=+
T Consensus 174 ~~l~~i~~~dL~Ft~~E~~~~~~~---~~g~~l~~~~~~~l~~~TeGW~ 219 (903)
T PRK04841 174 DQLLEIGSQQLAFDHQEAQQFFDQ---RLSSPIEAAESSRLCDRVEGWP 219 (903)
T ss_pred CEEEEECHHHCCCCHHHHHHHHHH---CCCCCCCHHHHHHHHHHHCCHH
T ss_conf 956998688759999999999986---2599999999999999708789
No 168
>KOG0744 consensus
Probab=98.15 E-value=3.6e-06 Score=65.68 Aligned_cols=128 Identities=21% Similarity=0.388 Sum_probs=76.7
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC-------CC------CHH
Q ss_conf 62010787988889999999996146877788665878999779999779877822245332-------23------345
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAAS-------HT------SID 89 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s-------~~------~id 89 (369)
-.|++||||+|||++-+++|+.|--.....+. +--++||+..| .. -.+
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~-------------------~~~liEinshsLFSKWFsESgKlV~kmF~ 239 (423)
T KOG0744 179 LILLHGPPGTGKTSLCKALAQKLSIRTNDRYY-------------------KGQLIEINSHSLFSKWFSESGKLVAKMFQ 239 (423)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHEEEECCCCC-------------------CCEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89985799988227999998751465237644-------------------40699970467889887121138999999
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECHHHCC---------------CCHHHHHHHHHHHCCCC-CCEEEEECCC-CCCCHH
Q ss_conf 556655544565420465237751156648---------------00167899999721221-1146650675-433035
Q 537021.9.peg.4 90 DVREIIDQIYYKPISARFRVYIMDEVQMLS---------------TAAFNGLLKTLEEPPPH-VKFIFATTEI-RKIPIT 152 (369)
Q Consensus 90 ~ir~l~~~~~~~p~~~~~kv~iid~a~~m~---------------~~a~NaLLK~lEEPp~~-~~fil~t~~~-~~ll~T 152 (369)
+|.++.+. +|..--++|||++.+. ...-||||--|..--.+ -+.||+|.|. +.|=..
T Consensus 240 kI~ELv~d------~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~A 313 (423)
T KOG0744 240 KIQELVED------RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVA 313 (423)
T ss_pred HHHHHHHC------CCCEEEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHH
T ss_conf 99999717------896899980787888999875413799821899999999989986047977999626267777888
Q ss_pred HHHHHH-HHHCCCCCCHHHHHHHH
Q ss_conf 675433-32102454001356787
Q 537021.9.peg.4 153 VLSRCQ-RFDLHRISIGDLIELFT 175 (369)
Q Consensus 153 I~SRcq-~~~f~~l~~~~i~~~L~ 175 (369)
-.-|.- +++..+++..-+...|+
T Consensus 314 fVDRADi~~yVG~Pt~~ai~~Ilk 337 (423)
T KOG0744 314 FVDRADIVFYVGPPTAEAIYEILK 337 (423)
T ss_pred HHHHHHHEEECCCCCHHHHHHHHH
T ss_conf 611754211038963999999999
No 169
>KOG0733 consensus
Probab=98.14 E-value=4.9e-05 Score=57.28 Aligned_cols=164 Identities=20% Similarity=0.247 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHHHHCC------------CCCEEEHHCCCCCCCHHHHHHHHHHHH--CCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 8489999999999828------------767062010787988889999999996--14687778866587899977999
Q 537021.9.peg.4 3 GQKPMIKTLTNAFKSG------------RIAQSYMLSGTRGIGKTTTARIIARSL--NYKTAHIDVPTVEFEGFGEHCQA 68 (369)
Q Consensus 3 Gq~~~~~~l~~~~~~~------------~~~ha~lf~G~~G~GK~~~a~~~A~~l--~c~~~~~~~~~~~~c~~c~~c~~ 68 (369)
|++++...|..+|..- ..|...|++||||||||.+|++.|..- |.-+-.
T Consensus 515 aL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVK----------------- 577 (802)
T KOG0733 515 ALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVK----------------- 577 (802)
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEC-----------------
T ss_conf 499999999999860023888999828889872387579986188999998503047547623-----------------
Q ss_pred HHCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCC-----------CHHHHHHHHHHHC--
Q ss_conf 9779877822--245332233455566555445654204652377511566480-----------0167899999721--
Q 537021.9.peg.4 69 IIRGNHVDVV--ELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLST-----------AAFNGLLKTLEEP-- 133 (369)
Q Consensus 69 i~~~~~~d~~--e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~-----------~a~NaLLK~lEEP-- 133 (369)
-|.++ ++ |.|. --||.+-..++- +-.=||++||.|.|.. ---|-||--|.--
T Consensus 578 -----GPELlNkYV-GESE---rAVR~vFqRAR~----saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~ 644 (802)
T KOG0733 578 -----GPELLNKYV-GESE---RAVRQVFQRARA----SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEE 644 (802)
T ss_pred -----CHHHHHHHH-HHHH---HHHHHHHHHHHC----CCCEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf -----889998774-2378---999999998623----898389851112027655777750589999999987316211
Q ss_pred CCCCCEEEEECCCCCCCHHHHH--HHH-HHHCCCCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHC
Q ss_conf 2211146650675433035675--433-3210245400135678764310134562566-4456531
Q 537021.9.peg.4 134 PPHVKFIFATTEIRKIPITVLS--RCQ-RFDLHRISIGDLIELFTKILQEESIEFDPEA-VAMIARA 196 (369)
Q Consensus 134 p~~~~fil~t~~~~~ll~TI~S--Rcq-~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~-l~~ia~~ 196 (369)
-.+|+.|-+|+.|+.|=|.|.= |-- .+....++.++=...|+.+.+..+..++++. ++-||+.
T Consensus 645 R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~ 711 (802)
T KOG0733 645 RRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARN 711 (802)
T ss_pred CCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHC
T ss_conf 1425999506897655565518775574245069987889999999853579988754589998512
No 170
>pfam00493 MCM MCM2/3/5 family.
Probab=98.09 E-value=2.1e-05 Score=59.96 Aligned_cols=141 Identities=18% Similarity=0.183 Sum_probs=80.1
Q ss_pred CCCHHHHHHHHHHHHHCCC------------CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 9284899999999998287------------6706201078798888999999999614687778866587899977999
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGR------------IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQA 68 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~------------~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~ 68 (369)
|-|++.++..+--++-.|- =.| .|+.|.||+||+.+.+..++.. +...+ .+|...+-
T Consensus 26 i~G~~~vK~ai~l~l~gg~~~~~~~~~~~Rg~ih-iLLvGdPG~gKSqlLk~~~~~~----pr~~~----tsg~~ss~-- 94 (327)
T pfam00493 26 IYGHEDVKKAILLQLFGGVKKNLPDGTRLRGDIN-VLLVGDPGTAKSQLLKYVAKLA----PRAVY----TSGKGSSA-- 94 (327)
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE-EEEECCCCCCHHHHHHHHHHHC----CCCEE----ECCCCCCC--
T ss_conf 2498799999999980898765888862036511-8984699815609999999868----87088----31776656--
Q ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---HCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCC--------
Q ss_conf 9779877822245332233455566555445654---20465237751156648001678999997212211--------
Q 537021.9.peg.4 69 IIRGNHVDVVELDAASHTSIDDVREIIDQIYYKP---ISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHV-------- 137 (369)
Q Consensus 69 i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p---~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~-------- 137 (369)
.. +.++- .-|.. --++ .+.+ .-++.-|+.|||.++|+...+.||+-.||+=.-.+
T Consensus 95 ------~G---LTa~~--~~d~~--~~~~-~leaGalvlAd~Gv~cIDEfdk~~~~d~saL~EAMEqqtVsIaKaGi~~t 160 (327)
T pfam00493 95 ------AG---LTAAV--VRDPD--TGEW-TLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGIVAT 160 (327)
T ss_pred ------CC---CEEEE--EEECC--CCCE-EEECCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCEEEEECCCEEEE
T ss_conf ------77---61589--98068--8836-98368477558982785005558876799999999868177633853897
Q ss_pred ----CEEEEECCCCC--------------CCHHHHHHH-HHHHCCCCC
Q ss_conf ----14665067543--------------303567543-332102454
Q 537021.9.peg.4 138 ----KFIFATTEIRK--------------IPITVLSRC-QRFDLHRIS 166 (369)
Q Consensus 138 ----~fil~t~~~~~--------------ll~TI~SRc-q~~~f~~l~ 166 (369)
..||+|.||-. +++++.||- ..+-+.-.+
T Consensus 161 L~ar~sVlAaaNP~~g~yd~~~~~~~ni~Lp~~lLsRFDLif~l~D~~ 208 (327)
T pfam00493 161 LNARCSVLAAANPIFGRYDPKKSVAENINLPPPLLSRFDLIFVLLDKP 208 (327)
T ss_pred ECCCCEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCEEEEEEEECCC
T ss_conf 258717998527767737888898885589767745010798840689
No 171
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=98.04 E-value=8.2e-06 Score=63.02 Aligned_cols=113 Identities=24% Similarity=0.287 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHHC-CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCHHHHHHHC---CCCC
Q ss_conf 92848999999999982-87670620107879888899999999961468777886658-7899977999977---9877
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKS-GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVE-FEGFGEHCQAIIR---GNHV 75 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~-~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~-~c~~c~~c~~i~~---~~~~ 75 (369)
+||+....+.+++.++. .+-....|+.|++|+||+.+|+++-..- .....|... -|+.-+. ..+.. |.
T Consensus 1 lIG~S~~m~~l~~~i~~~a~~~~pVLI~GE~GtGK~~lAr~IH~~S----~r~~~pfi~vnc~~~~~-~~le~~LFG~-- 73 (168)
T pfam00158 1 LIGESPAMQEVLELAKRVAPTDATVLITGESGTGKELFARAIHQLS----PRADGPFVAVNCAAIPE-ELLESELFGH-- 73 (168)
T ss_pred CEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHC----CCCCCCCCCCCCCCCCH-HHHHHHHCCC--
T ss_conf 9738999999999999995889988998999888899999999852----43568831256789987-7999987587--
Q ss_pred CCCCCCCCCCCCHHHHH-HHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHH
Q ss_conf 82224533223345556-6555445654204652377511566480016789999972
Q 537021.9.peg.4 76 DVVELDAASHTSIDDVR-EIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEE 132 (369)
Q Consensus 76 d~~e~~~~s~~~id~ir-~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEE 132 (369)
+ .++ -++..+.+ -++ ..+..-..++||++.|+.+.|..||+.||+
T Consensus 74 ---~-~g~-f~ga~~~~~G~l-------e~A~gGTL~LdeI~~L~~~~Q~~Ll~~L~~ 119 (168)
T pfam00158 74 ---E-KGA-FTGAVSDRKGLF-------ELADGGTLFLDEIGELPLELQAKLLRVLQE 119 (168)
T ss_pred ---C-CCC-CCCCCCCCCCCE-------EECCCCEEECCCHHHCCHHHHHHHHHHHHC
T ss_conf ---6-676-689875789964-------226998788024413999999999999857
No 172
>KOG0737 consensus
Probab=98.04 E-value=2e-05 Score=60.21 Aligned_cols=169 Identities=18% Similarity=0.300 Sum_probs=97.4
Q ss_pred CHHHHHHHHHHHHH----------CCCC---CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 84899999999998----------2876---7062010787988889999999996146877788665878999779999
Q 537021.9.peg.4 3 GQKPMIKTLTNAFK----------SGRI---AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAI 69 (369)
Q Consensus 3 Gq~~~~~~l~~~~~----------~~~~---~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i 69 (369)
|=+.+++.|+..|. .+++ +-..|++||||+|||.+|.+.|+..-+.--..
T Consensus 96 gLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv----------------- 158 (386)
T KOG0737 96 GLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINV----------------- 158 (386)
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCEE-----------------
T ss_conf 528999999987752012466641453146864305118998218899999998727971000-----------------
Q ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCC------HHHHHHHH---------HHHCC
Q ss_conf 7798778222453322334555665554456542046523775115664800------16789999---------97212
Q 537021.9.peg.4 70 IRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTA------AFNGLLKT---------LEEPP 134 (369)
Q Consensus 70 ~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~------a~NaLLK~---------lEEPp 134 (369)
..++.+| -|. -+-..+...+..-|+.=..-|+.|||+|.|..+ -+-+-.|+ .-.+.
T Consensus 159 ~~s~lt~-KWf--------gE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~ 229 (386)
T KOG0737 159 SVSNLTS-KWF--------GEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDS 229 (386)
T ss_pred ECCCCCH-HHH--------HHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 1365532-667--------7788899999820653486156566588898640464279999999999998616467887
Q ss_pred CCCCEEE-EECCCCCCCHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
Q ss_conf 2111466-5067543303567543-332102454001356787643101345625664456531676
Q 537021.9.peg.4 135 PHVKFIF-ATTEIRKIPITVLSRC-QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDG 199 (369)
Q Consensus 135 ~~~~fil-~t~~~~~ll~TI~SRc-q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~G 199 (369)
. .+.+| +|+.|..+=..|++|- ++|...-+...+=.+.|+=|++.|+++ ++=.+..+|+..+|
T Consensus 230 ~-rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~G 294 (386)
T KOG0737 230 E-RVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEG 294 (386)
T ss_pred C-EEEEEECCCCCCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHCCC
T ss_conf 1-59997079998437899998476436537984444999999994243468-77698888876089
No 173
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.01 E-value=3.2e-05 Score=58.62 Aligned_cols=200 Identities=19% Similarity=0.274 Sum_probs=117.3
Q ss_pred CCCHHHHHHHHHHHHH---CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHH------
Q ss_conf 9284899999999998---28767062010787988889999999996146877788665-8789997799997------
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFK---SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV-EFEGFGEHCQAII------ 70 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~---~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~-~~c~~c~~c~~i~------ 70 (369)
+||+....+.+++.+. .-..| .|++|+.|+||-.+||++=+. ++...+|-+ --|+..+.- .+.
T Consensus 143 liG~S~am~~l~~~i~kvA~s~a~--VLI~GESGtGKElvAr~IH~~----S~R~~~PFVavNcaAip~~-l~ESELFGh 215 (464)
T COG2204 143 LVGESPAMQQLRRLIAKVAPSDAS--VLITGESGTGKELVARAIHQA----SPRAKGPFIAVNCAAIPEN-LLESELFGH 215 (464)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCC--EEEECCCCCCHHHHHHHHHHH----CCCCCCCCEEEECCCCCHH-HHHHHHHCC
T ss_conf 520699999999999998477997--899778987589999999860----7445899256334648988-877776145
Q ss_pred -CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC-----------CCCC
Q ss_conf -7987782224533223345556655544565420465237751156648001678999997212-----------2111
Q 537021.9.peg.4 71 -RGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP-----------PHVK 138 (369)
Q Consensus 71 -~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp-----------~~~~ 138 (369)
.|.|. +|...++ ..+.. ..| =..++||...|..+.|..||+.|+|-- -+|.
T Consensus 216 ekGAFT------GA~~~r~-------G~fE~--A~G--GTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvR 278 (464)
T COG2204 216 EKGAFT------GAITRRI-------GRFEQ--ANG--GTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVR 278 (464)
T ss_pred CCCCCC------CCCCCCC-------CCEEE--CCC--CEEEEECCCCCCHHHHHHHHHHHHCCEEEECCCCCEECEEEE
T ss_conf 656767------7643457-------61577--379--658732311099999999999987070673588860000169
Q ss_pred EEEEECCC-------CCCCHHHHHHHHHHHC--CCCCC--HHH----HHHHHHHHHHCC---CCCCHHHHHHH-HHCCCC
Q ss_conf 46650675-------4330356754333210--24540--013----567876431013---45625664456-531676
Q 537021.9.peg.4 139 FIFATTEI-------RKIPITVLSRCQRFDL--HRISI--GDL----IELFTKILQEES---IEFDPEAVAMI-ARASDG 199 (369)
Q Consensus 139 fil~t~~~-------~~ll~TI~SRcq~~~f--~~l~~--~~i----~~~L~~i~~~E~---i~~d~~~l~~i-a~~s~G 199 (369)
+|-+|+.. .+.-+-.-.|--++++ +|+.. ++| ..+|.+.+...| ..++++++..+ ++-.-|
T Consensus 279 iIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPG 358 (464)
T COG2204 279 IIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPG 358 (464)
T ss_pred EEEECCCCHHHHHHCCCCHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCH
T ss_conf 99605778999988197378888652331104876223620079999999999999809998887999999997389981
Q ss_pred CCCHHHHCCCCCCCHHHCC-CCHHHH
Q ss_conf 4200110001110000001-210322
Q 537021.9.peg.4 200 SARDGLSLLDQAIARCNDK-IVTSSV 224 (369)
Q Consensus 200 slR~Al~lLeq~i~~~~~~-i~~e~v 224 (369)
|+|.--|..+++...+++. ++.++.
T Consensus 359 NVREL~N~ver~~il~~~~~i~~~~l 384 (464)
T COG2204 359 NVRELENVVERAVILSEGPEIEVEDL 384 (464)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHC
T ss_conf 89999999999985178654665441
No 174
>pfam05621 TniB Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.
Probab=98.00 E-value=0.00011 Score=54.59 Aligned_cols=195 Identities=13% Similarity=0.150 Sum_probs=103.2
Q ss_pred CCHHHHHHHHHHHH------HCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 28489999999999------828767062010787988889999999996146877788665878999779999779877
Q 537021.9.peg.4 2 IGQKPMIKTLTNAF------KSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHV 75 (369)
Q Consensus 2 iGq~~~~~~l~~~~------~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~ 75 (369)
||...+.+.|.+.- ...|.|. +|+.|+.|.|||++++.|++.-.-. .+ +.. ..|+- -.+....-|
T Consensus 37 IgY~~A~~~L~~Le~Ll~~P~~~Rmp~-lLlvGdsnnGKT~Iv~rF~~~hp~~---~d-~~~---~~~PV-l~vq~P~~p 107 (302)
T pfam05621 37 IGYPRAVEALNRLEALYAWPNKQRMPN-LLLVGPTNNGKSMIVEKFRRAHPAG---SD-ADQ---EHIPV-LVVQMPSEP 107 (302)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCC-EEEEECCCCCHHHHHHHHHHHCCCC---CC-CCC---CCCEE-EEEECCCCC
T ss_conf 277899999999999984686468875-5887079887899999999967998---78-666---70218-999769998
Q ss_pred CCCCC---------CC-CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHC---CCCHHHHH---HHHHHHCCCCCCE
Q ss_conf 82224---------53-322334555665554456542046523775115664---80016789---9999721221114
Q 537021.9.peg.4 76 DVVEL---------DA-ASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQML---STAAFNGL---LKTLEEPPPHVKF 139 (369)
Q Consensus 76 d~~e~---------~~-~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m---~~~a~NaL---LK~lEEPp~~~~f 139 (369)
|...+ .+ ..+..+.+-++....+ =-.-+-|++||||+|.+ |...|.++ ||.|--= -.+-+
T Consensus 108 ~~~~lY~~IL~~l~aP~~~~~~~~~~~~~~~~l---l~~~~vrmLIIDEiHnlL~Gs~~~qr~~ln~LK~L~Ne-l~Ipi 183 (302)
T pfam05621 108 SVIRFYVALLAAMGAPLRPRPRLPEMEQLALAL---LRKVGVRMLVIDELHNVLAGNSVNRREFLNLLRFLGNE-LRIPL 183 (302)
T ss_pred CHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH---HHHCCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHHHC-CCCCE
T ss_conf 868999999998378778887789999999999---99749878998543656048688999999999998636-58786
Q ss_pred EEEECC-CCCCCHH---HHHHHHHHHCCCCCCHHHHHH-HHHH---H--H-HCCCCCCHHHHHHHHHCCCCCCCHHHHCC
Q ss_conf 665067-5433035---675433321024540013567-8764---3--1-01345625664456531676420011000
Q 537021.9.peg.4 140 IFATTE-IRKIPIT---VLSRCQRFDLHRISIGDLIEL-FTKI---L--Q-EESIEFDPEAVAMIARASDGSARDGLSLL 208 (369)
Q Consensus 140 il~t~~-~~~ll~T---I~SRcq~~~f~~l~~~~i~~~-L~~i---~--~-~E~i~~d~~~l~~ia~~s~GslR~Al~lL 208 (369)
+++.+. .-..+.| +.||...+.+++-..++=... |..+ + . ..++ .+++....|...|+|.+++--.++
T Consensus 184 V~vGt~eA~~ai~tD~QlasRF~~~~Lp~W~~d~ef~~LL~sfe~~LPL~~~S~L-~~~~~a~~I~~~SeG~iGei~~Ll 262 (302)
T pfam05621 184 VGVGTRDAYLAIRSDDQLENRFEPMLLPPWEANDDCCSLLASFAASLPLRRPSPI-ATLDMARYLLTRSEGTIGELAHLL 262 (302)
T ss_pred EEECCHHHHHHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 9953199999970688888505861168888980899999999986888777688-889999999998599287999999
Q ss_pred CC
Q ss_conf 11
Q 537021.9.peg.4 209 DQ 210 (369)
Q Consensus 209 eq 210 (369)
.+
T Consensus 263 ~~ 264 (302)
T pfam05621 263 MA 264 (302)
T ss_pred HH
T ss_conf 99
No 175
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.99 E-value=0.00021 Score=52.58 Aligned_cols=124 Identities=19% Similarity=0.378 Sum_probs=71.0
Q ss_pred CCCHHHHHHHH---HHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 92848999999---999982876706201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4 1 MIGQKPMIKTL---TNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV 77 (369)
Q Consensus 1 iiGq~~~~~~l---~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~ 77 (369)
++|-+...+.| .....+|.-+.--|++|.+|+||+++.+++-... .+..+++
T Consensus 62 l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~-------------------------~~~glrL 116 (287)
T COG2607 62 LVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY-------------------------ADEGLRL 116 (287)
T ss_pred HHCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHH-------------------------HHCCCEE
T ss_conf 727318999999989999728865236776377777479999999998-------------------------7417707
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE-ECHHHCCCCHHHHHHHH-----HHHCCCCCCEEEEECCCCCCCH
Q ss_conf 22453322334555665554456542046523775-11566480016789999-----9721221114665067543303
Q 537021.9.peg.4 78 VELDAASHTSIDDVREIIDQIYYKPISARFRVYIM-DEVQMLSTAAFNGLLKT-----LEEPPPHVKFIFATTEIRKIPI 151 (369)
Q Consensus 78 ~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~ii-d~a~~m~~~a~NaLLK~-----lEEPp~~~~fil~t~~~~~ll~ 151 (369)
+|++.. -+...-.|.+.+.-.| .|+||+ |+---=.-+.+-..||+ +|.+|.||+|.-+++--+-++.
T Consensus 117 VEV~k~---dl~~Lp~l~~~Lr~~~----~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e 189 (287)
T COG2607 117 VEVDKE---DLATLPDLVELLRARP----EKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPE 189 (287)
T ss_pred EEECHH---HHHHHHHHHHHHHCCC----CEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCH
T ss_conf 997688---8865799999996188----608999567777778138999999853885568870799971587533627
Q ss_pred HHHHH
Q ss_conf 56754
Q 537021.9.peg.4 152 TVLSR 156 (369)
Q Consensus 152 TI~SR 156 (369)
...-|
T Consensus 190 ~~~dn 194 (287)
T COG2607 190 DMKDN 194 (287)
T ss_pred HHHHC
T ss_conf 66427
No 176
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482 This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=97.98 E-value=3.8e-06 Score=65.45 Aligned_cols=40 Identities=30% Similarity=0.390 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHH
Q ss_conf 9284899999999998287670620107879888899999999
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIAR 43 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~ 43 (369)
|+||++.++.|.=++.-| |-+||.||||+|||.+|+.+--
T Consensus 196 v~GQ~~akRAleIAaAGG---HNlll~GPPGsGKTmla~r~~g 235 (505)
T TIGR00368 196 VKGQQHAKRALEIAAAGG---HNLLLLGPPGSGKTMLASRLQG 235 (505)
T ss_pred CCCHHHCCHHHHHHHHCC---CCEEEECCCCCCHHHHHHHHHC
T ss_conf 545101102677753135---6437678249626899987510
No 177
>KOG0739 consensus
Probab=97.98 E-value=0.00026 Score=51.97 Aligned_cols=271 Identities=14% Similarity=0.203 Sum_probs=128.3
Q ss_pred CCCHHHHHHHHHHHH----------HCCCCC-EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 928489999999999----------828767-062010787988889999999996146877788665878999779999
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAF----------KSGRIA-QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAI 69 (369)
Q Consensus 1 iiGq~~~~~~l~~~~----------~~~~~~-ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i 69 (369)
|-|-+.+++.|+.+| ..+|.| .++|++||||+||+-+|.+.|-.-|.+ .
T Consensus 135 VAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST--F------------------ 194 (439)
T KOG0739 135 VAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST--F------------------ 194 (439)
T ss_pred HCCCHHHHHHHHHHEEECCCCHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCC--E------------------
T ss_conf 01405689998754350002535415887754257886799975779999987414770--6------------------
Q ss_pred HCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC----CCHHHHHHHHHHHCC---------
Q ss_conf 779877822--24533223345556655544565420465237751156648----001678999997212---------
Q 537021.9.peg.4 70 IRGNHVDVV--ELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS----TAAFNGLLKTLEEPP--------- 134 (369)
Q Consensus 70 ~~~~~~d~~--e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~----~~a~NaLLK~lEEPp--------- 134 (369)
.+-+.-|++ |+ .+-..|..++.-..-+.+.-||+|||.|.|. ..-..|-+++=-|.-
T Consensus 195 FSvSSSDLvSKWm--------GESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d 266 (439)
T KOG0739 195 FSVSSSDLVSKWM--------GESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGND 266 (439)
T ss_pred EEEEHHHHHHHHH--------CCHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 8730178899873--------21799999999998734994798634444326887771177777777888764066658
Q ss_pred CCCCEEEEECC-CCCCCHHHHHHHH-HHHCCCCCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCC
Q ss_conf 21114665067-5433035675433-3210245400135678764-3101345625664456531676420011000111
Q 537021.9.peg.4 135 PHVKFIFATTE-IRKIPITVLSRCQ-RFDLHRISIGDLIELFTKI-LQEESIEFDPEAVAMIARASDGSARDGLSLLDQA 211 (369)
Q Consensus 135 ~~~~fil~t~~-~~~ll~TI~SRcq-~~~f~~l~~~~i~~~L~~i-~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~ 211 (369)
..-+.+|-+|| |-.|=..||-|.- ++.. |++..-...+.-++ +-.---.+.+.....+++..+|=-+.-+++.-+-
T Consensus 267 ~~gvLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrD 345 (439)
T KOG0739 267 NDGVLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRD 345 (439)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCEEC-CCCCHHHHHHHHEECCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEHH
T ss_conf 886489723788436779999876502301-0873787655503204788641335669999764378776754778666
Q ss_pred CCH-HHCCC-CHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 000-00012-1032200013567777788887630136334678876543-04762135787775348999999745741
Q 537021.9.peg.4 212 IAR-CNDKI-VTSSVRLMLALADRNRIMDLFGYLIKGDIINVLQEFSSQY-DSGVNPSVILHDLAEFTHLVTRIKYIPEM 288 (369)
Q Consensus 212 i~~-~~~~i-~~e~v~~llg~~~~~~i~~Ll~ai~~~d~~~al~~l~~l~-~~g~d~~~iL~~Ll~~~rdll~~k~~~~~ 288 (369)
..+ .--++ +.-...+.-|-...+.+.+++.-+.-+|...+-..|.+.- +.-.+|..-+.+++.- +..
T Consensus 346 almePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~---l~~------- 415 (439)
T KOG0739 346 ALMEPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKS---LSR------- 415 (439)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHCCCCHHHCCCCCCCHHHHHHH---HHH-------
T ss_conf 4423588751023220068999834303456889999962266543028786605997409999999---862-------
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCH
Q ss_conf 22344998899999999862998
Q 537021.9.peg.4 289 ADTLLYSEAENARALQYSKEVSI 311 (369)
Q Consensus 289 ~~~~~~~~~e~~~i~~~a~~i~~ 311 (369)
....+++++.....++.+-++.
T Consensus 416 -tkPTvn~~Dl~k~~~Ft~dFGq 437 (439)
T KOG0739 416 -TKPTVNEDDLLKHEKFTEDFGQ 437 (439)
T ss_pred -CCCCCCHHHHHHHHHHHHHHCC
T ss_conf -4897777889999998876342
No 178
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=97.95 E-value=2.8e-05 Score=59.13 Aligned_cols=156 Identities=21% Similarity=0.301 Sum_probs=90.7
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC-CCCCCCCHHHHHHHHHHHH
Q ss_conf 706201078798888999999999614687778866587899977999977987782224-5332233455566555445
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL-DAASHTSIDDVREIIDQIY 99 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~-~~~s~~~id~ir~l~~~~~ 99 (369)
|...|++||||+|||.+|+++|...+.+--..- | ..+.. .+| + |.-=||++-+=+.
T Consensus 156 PKGvLLyGPPGtGKTLlAKAvA~et~ATFIrvV-------g-----SElV~------KyIGE-----GArLV~~~F~LAk 212 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV-------G-----SELVR------KYIGE-----GARLVREVFELAK 212 (364)
T ss_pred CCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEE-------H-----HHHHH------HHHCC-----HHHHHHHHHHHHH
T ss_conf 986570075797688999986314551268860-------4-----44444------44133-----1689999999853
Q ss_pred HHHHCCCCCEEEEECHHHCC-----------CCHHHHHHHHHHH-----CCCCCCEEEEECCCCCCCHHHHHHH---HHH
Q ss_conf 65420465237751156648-----------0016789999972-----1221114665067543303567543---332
Q 537021.9.peg.4 100 YKPISARFRVYIMDEVQMLS-----------TAAFNGLLKTLEE-----PPPHVKFIFATTEIRKIPITVLSRC---QRF 160 (369)
Q Consensus 100 ~~p~~~~~kv~iid~a~~m~-----------~~a~NaLLK~lEE-----Pp~~~~fil~t~~~~~ll~TI~SRc---q~~ 160 (369)
+--.-|++|||.|... ++-+-.|+-.|=| |-.+|..|-+||.++-|=|+|.-=- +.+
T Consensus 213 ----EKaPsIiFIDEiDAiaakR~~~~TsGdREV~RTlmQLLAElDGFd~rg~VkviaATNR~DilDPA~LRPGRFDR~I 288 (364)
T TIGR01242 213 ----EKAPSIIFIDEIDAIAAKRVDSSTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPAILRPGRFDRII 288 (364)
T ss_pred ----CCCCCEEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHCCCCCCCCCCCCCEE
T ss_conf ----0698168610133354321146778731578899999975248887676168872076202043214888613257
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHCCCCCCCHHH
Q ss_conf 1024540013567876431013456256-64456531676420011
Q 537021.9.peg.4 161 DLHRISIGDLIELFTKILQEESIEFDPE-AVAMIARASDGSARDGL 205 (369)
Q Consensus 161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~-~l~~ia~~s~GslR~Al 205 (369)
.. |+|..+=.--+-+| ...++.+.++ .++.||+..+|..+.-|
T Consensus 289 EV-PlP~~~GR~eIlki-HTr~~~la~dVdl~~~A~~TeG~sGAdl 332 (364)
T TIGR01242 289 EV-PLPDFEGRLEILKI-HTRKMKLAEDVDLEAIAKLTEGASGADL 332 (364)
T ss_pred EC-CCCCCCCHHHHHHH-HHCCCCCCCCCCHHHHHHHHCCCCCCHH
T ss_conf 31-69783220566555-2100001235687999987478866304
No 179
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.93 E-value=7.6e-05 Score=55.88 Aligned_cols=149 Identities=18% Similarity=0.262 Sum_probs=77.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH--CCCCCC--
Q ss_conf 9284899999999998287670620107879888899999999961468777886658789997799997--798778--
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAII--RGNHVD-- 76 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~--~~~~~d-- 76 (369)
|.||+.++..|.=+..-+ |-+|+.||||+|||.+|+.+.--|-=.... +.-.+..|. .|..++
T Consensus 193 v~Gq~~akraleIAAAGg---HnlLl~GpPG~GKTMlA~rlp~ILPpLt~~----------e~lEv~~I~Svag~~~~~~ 259 (506)
T PRK09862 193 VVGQEQGKRGLEITAAGG---HNLLLIGPPGTGKTMLASRINGLLPDLSNE----------EALESAAILSLVNAESVQK 259 (506)
T ss_pred HCCCHHHHHHHHHHHCCC---CCEEEECCCCCCHHHHHHHHHHCCCCCCHH----------HHHHHHHHHHHHCCCCCCC
T ss_conf 369799999999974468---865987699945989997751238998989----------9999999998718987777
Q ss_pred CCCCCC--CCCCCHHHHHHHH--------HHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHH-------------C
Q ss_conf 222453--3223345556655--------5445654204652377511566480016789999972-------------1
Q 537021.9.peg.4 77 VVELDA--ASHTSIDDVREII--------DQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEE-------------P 133 (369)
Q Consensus 77 ~~e~~~--~s~~~id~ir~l~--------~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEE-------------P 133 (369)
.+...+ +-|.++- .-.++ ..+++ +..=|.++||.-.++++.-++|+--||+ +
T Consensus 260 ~~~~rPfR~PHHs~S-~~aliGGG~~~~PGEISL----AH~GVLFLDElpEF~r~vLe~LRqPLE~g~I~IsRa~~~~~~ 334 (506)
T PRK09862 260 QWRQRPFRSPHHSAS-LTAMVGGGAIPGPGEISL----AHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITY 334 (506)
T ss_pred CCCCCCEECCCCCCC-HHHHHCCCCCCCCCCEEE----CCCCEEEECCHHCCCHHHHHHHHHHHCCCEEEEEECCCEEEE
T ss_conf 546685037887654-766637999999972221----357578845500068889998776224775999966867986
Q ss_pred CCCCCEEEEECCC---CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 2211146650675---4330356754333210245400135678764
Q 537021.9.peg.4 134 PPHVKFIFATTEI---RKIPITVLSRCQRFDLHRISIGDLIELFTKI 177 (369)
Q Consensus 134 p~~~~fil~t~~~---~~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i 177 (369)
|.+..+|. +.|| ...... ..|| ++.++..|+.++
T Consensus 335 PA~F~LVa-AmNPCPCG~~~~~-~~~C--------t~~~~~rY~~rl 371 (506)
T PRK09862 335 PARFQLVA-AMNPSPTGHYQGN-HNRC--------TPEQTLRYLNRL 371 (506)
T ss_pred CCHHHHEH-HCCCCCCCCCCCC-CCCC--------CHHHHHHHHHHC
T ss_conf 15331111-0378888889999-7778--------989999998656
No 180
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.93 E-value=0.00027 Score=51.75 Aligned_cols=186 Identities=18% Similarity=0.197 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCC---CCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 4899999999998287670620107879888899999999961468777---8866587899977999977987782224
Q 537021.9.peg.4 4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHI---DVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~---~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
|+..+..+...++.|+-= ...+|+-|+|||...|+++.+++-..... +.|+...-+.|. ..+.... -
T Consensus 36 h~e~l~~l~~~i~d~qg~--~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~--ai~~~l~------~ 105 (269)
T COG3267 36 HNEALLMLHAAIADGQGI--LAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLE--AIVADLE------S 105 (269)
T ss_pred HHHHHHHHHHHHHCCCCE--EEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHH--HHHHHHC------C
T ss_conf 159999977777517855--99974477763699999998557885179983576301788999--9999840------5
Q ss_pred CCCCCC--CHHHHHHHHHHHHHHHHCCCC-CEEEEECHHHCCCCHHHHHHHHHHHCCCCCC--EEEEECCCCCC------
Q ss_conf 533223--345556655544565420465-2377511566480016789999972122111--46650675433------
Q 537021.9.peg.4 81 DAASHT--SIDDVREIIDQIYYKPISARF-RVYIMDEVQMLSTAAFNGLLKTLEEPPPHVK--FIFATTEIRKI------ 149 (369)
Q Consensus 81 ~~~s~~--~id~ir~l~~~~~~~p~~~~~-kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~--fil~t~~~~~l------ 149 (369)
++..+. ..+++ -..+.---.+|+| -+.++||||.++-++--+|+.+.|---+.+. =|+..-+|.--
T Consensus 106 ~p~~~~~~~~e~~---~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~ 182 (269)
T COG3267 106 QPKVNVNAVLEQI---DRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLP 182 (269)
T ss_pred CCCCHHHHHHHHH---HHHHHHHHHHCCCCEEEEEHHHHHHCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHCHH
T ss_conf 8320068899999---9999999981788737850167661754899999988620346672114550780114354428
Q ss_pred -CHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHCCCCCCC
Q ss_conf -0356754333-2102454001356787643101345---625664456531676420
Q 537021.9.peg.4 150 -PITVLSRCQR-FDLHRISIGDLIELFTKILQEESIE---FDPEAVAMIARASDGSAR 202 (369)
Q Consensus 150 -l~TI~SRcq~-~~f~~l~~~~i~~~L~~i~~~E~i~---~d~~~l~~ia~~s~GslR 202 (369)
+.-+.=||.. |.++|++.++...||++-++.-+-. ++++++..|...++|=+|
T Consensus 183 ~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~ 240 (269)
T COG3267 183 VLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPR 240 (269)
T ss_pred HHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHH
T ss_conf 8985431677899538867478999999998505899666770578999998525548
No 181
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.90 E-value=9.5e-05 Score=55.16 Aligned_cols=111 Identities=23% Similarity=0.340 Sum_probs=56.1
Q ss_pred EEHHCCCCCCCHHHHH-HHHHHHHCCCCCCCCCCCCCCCC-CCHHHHHHHCCC---------CCCCCCCCCCCCCCHHHH
Q ss_conf 6201078798888999-99999961468777886658789-997799997798---------778222453322334555
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTA-RIIARSLNYKTAHIDVPTVEFEG-FGEHCQAIIRGN---------HVDVVELDAASHTSIDDV 91 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a-~~~A~~l~c~~~~~~~~~~~~c~-~c~~c~~i~~~~---------~~d~~e~~~~s~~~id~i 91 (369)
--+++|-||+||||+. +++|. |........ +.+..+. +.+...++.+.- .++.... +. ++.
T Consensus 164 ~~vIsGGPGTGKTttV~~lLa~-l~~~~~~~~-l~I~LaAPTGKAAaRL~Esi~~~~~~l~~~~~~~~~-----~p-~~a 235 (607)
T PRK10875 164 ISVISGGPGTGKTTTVAKLLAA-LIQLADGER-CRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKR-----IP-EDA 235 (607)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHHHCCCCC-CEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHC-----CC-CCC
T ss_conf 7899679998778899999999-999645899-708998822899999999998787534766566633-----76-556
Q ss_pred HHHHHHHHHHHHCCC----------CCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 665554456542046----------52377511566480016789999972122111466506
Q 537021.9.peg.4 92 REIIDQIYYKPISAR----------FRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATT 144 (369)
Q Consensus 92 r~l~~~~~~~p~~~~----------~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~ 144 (369)
.-|..-+...|...+ +-|+|||||-|+...-..+||+-+ |+++.+||+..
T Consensus 236 ~TiHRLLg~~p~~~~f~~~~~nPL~~DvlIVDEASMVDl~Lm~~LL~Al---p~~aRLILvGD 295 (607)
T PRK10875 236 STLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMIDLPMMSRLIDAL---PDHARVIFLGD 295 (607)
T ss_pred EEHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC---CCCCEEEEECC
T ss_conf 6589752967898765657799998898999073366599999999828---99988999656
No 182
>KOG0741 consensus
Probab=97.90 E-value=4.4e-05 Score=57.65 Aligned_cols=122 Identities=25% Similarity=0.354 Sum_probs=70.8
Q ss_pred HHHHHHHHHCCC----------CCE--EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 999999998287----------670--62010787988889999999996146877788665878999779999779877
Q 537021.9.peg.4 8 IKTLTNAFKSGR----------IAQ--SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHV 75 (369)
Q Consensus 8 ~~~l~~~~~~~~----------~~h--a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~ 75 (369)
...++++..+.- ++| ..|++||||+|||.+||-+-+-||...+... +| + .|...
T Consensus 231 s~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIV------NG--P---eIL~K--- 296 (744)
T KOG0741 231 SDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIV------NG--P---EILNK--- 296 (744)
T ss_pred HHHHHHHHHHHCCCHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC------CC--H---HHHHH---
T ss_conf 9999998776329988998719511235788779998701899998787457998634------75--7---88987---
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHH----HHHHHCCCCCEEEEECHHHCC-------------CCHHHHHHHHHH--HCCCC
Q ss_conf 82224533223345556655544----565420465237751156648-------------001678999997--21221
Q 537021.9.peg.4 76 DVVELDAASHTSIDDVREIIDQI----YYKPISARFRVYIMDEVQMLS-------------TAAFNGLLKTLE--EPPPH 136 (369)
Q Consensus 76 d~~e~~~~s~~~id~ir~l~~~~----~~~p~~~~~kv~iid~a~~m~-------------~~a~NaLLK~lE--EPp~~ 136 (369)
++ | -+=+.||+|-.++ +-..-.++--|+|+||.|..- -+--|-||--|. |--.|
T Consensus 297 ---YV-G---eSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNN 369 (744)
T KOG0741 297 ---YV-G---ESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNN 369 (744)
T ss_pred ---HH-C---CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHC
T ss_conf ---60-6---3078899998757999984376677259996346799974488789886318999999985322876616
Q ss_pred CCEEEEECCCCCCC
Q ss_conf 11466506754330
Q 537021.9.peg.4 137 VKFIFATTEIRKIP 150 (369)
Q Consensus 137 ~~fil~t~~~~~ll 150 (369)
.+-|-.|+..+-|=
T Consensus 370 ILVIGMTNR~DlID 383 (744)
T KOG0741 370 ILVIGMTNRKDLID 383 (744)
T ss_pred EEEEECCCCHHHHH
T ss_conf 78994047366678
No 183
>KOG0735 consensus
Probab=97.86 E-value=0.00011 Score=54.62 Aligned_cols=171 Identities=16% Similarity=0.295 Sum_probs=101.1
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 70620107879888899999999961468777886658789997799997798778222453322334555665554456
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYY 100 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~ 100 (369)
+.+.|+.||+|+|||.+|+++++.+- .+..... .--+|.. +++ .+.+.|...+.++--
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv------~~v~Cs~-----------l~~---~~~e~iQk~l~~vfs 488 (952)
T KOG0735 431 HGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHV------EIVSCST-----------LDG---SSLEKIQKFLNNVFS 488 (952)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHC--CCCCEEE------EEEECHH-----------CCC---HHHHHHHHHHHHHHH
T ss_conf 66189867998777699999998751--5650699------9975221-----------042---048999999999999
Q ss_pred HHHCCCCCEEEEECHHHCCC-----CHH-----H---HHH----HHHHHCCCCCCEEEEECCCCCCCHHHHHHH--H-HH
Q ss_conf 54204652377511566480-----016-----7---899----999721221114665067543303567543--3-32
Q 537021.9.peg.4 101 KPISARFRVYIMDEVQMLST-----AAF-----N---GLL----KTLEEPPPHVKFIFATTEIRKIPITVLSRC--Q-RF 160 (369)
Q Consensus 101 ~p~~~~~kv~iid~a~~m~~-----~a~-----N---aLL----K~lEEPp~~~~fil~t~~~~~ll~TI~SRc--q-~~ 160 (369)
..+.-..-|+++|+.|-+-- .++ + ++| |.--+.-..+.||....+.+.+.|+..|-- | +.
T Consensus 489 e~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~ 568 (952)
T KOG0735 489 EALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVI 568 (952)
T ss_pred HHHHHCCCEEEECCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHCCHHHCCCCCEEEEE
T ss_conf 98863780899705035405684447730289999999999999998706857999985143420385334763147888
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCC-CHHHHCCCCCCC
Q ss_conf 10245400135678764310134562566445653167642-001100011100
Q 537021.9.peg.4 161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSA-RDGLSLLDQAIA 213 (369)
Q Consensus 161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~Gsl-R~Al~lLeq~i~ 213 (369)
.++++...+=...|..++.+-......+.+++++...+|=. +|-.-+.|+++.
T Consensus 569 ~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~ 622 (952)
T KOG0735 569 ALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIH 622 (952)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 158923567999999999755345456789988876078440447999999999
No 184
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit; InterPro: IPR012804 Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) , . The corresponding cobalt chelatases are not homologous. Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (IPR010388 from INTERPRO). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis, (IPR011953 from INTERPRO, IPR006537 from INTERPRO, IPR006538 from INTERPRO) . The two pathways differ in the point of cobalt insertion during corrin ring formation . There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction . Cobaltochelatase shows similarities with magnesium chelatase, which is also a complex ATP-dependent enzyme made up of two separable components. However, unlike the situation in cobaltochelatase, one of these two components is membrane bound in magnesium chelatase . .
Probab=97.85 E-value=1.8e-05 Score=60.40 Aligned_cols=272 Identities=17% Similarity=0.197 Sum_probs=140.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHH-------CCCCCCCCCCCCCCCCCCHHHHHHHC--
Q ss_conf 928489999999999828767062010787988889999999996-------14687778866587899977999977--
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSL-------NYKTAHIDVPTVEFEGFGEHCQAIIR-- 71 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l-------~c~~~~~~~~~~~~c~~c~~c~~i~~-- 71 (369)
||||+..+..|-=...+-+|.- .|+.|++||||+|+||.|+.-| -|.-.-... .|.-.|+.|+.-..
T Consensus 6 iVGQe~LK~ALLL~Av~P~iGG-VLirG~KGTAKSTaaR~L~~LLP~i~~v~gC~f~cdP~---~P~~~C~~C~~~~~~~ 81 (688)
T TIGR02442 6 IVGQEDLKLALLLNAVNPRIGG-VLIRGEKGTAKSTAARGLAALLPDIDVVAGCPFSCDPD---DPEEWCEECRRKLEEQ 81 (688)
T ss_pred CCCHHHHHHHHHHEEECCCCCE-EEEECCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCC---CCCCCCHHHHHHHHCC
T ss_conf 2142798653210025266370-78877888627898884876160236640478887778---8704006767555204
Q ss_pred CCCCC------CCCC-CCCCC----CCHHHHHHHHH-HHHHHHH---CCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf 98778------2224-53322----33455566555-4456542---046523775115664800167899999721221
Q 537021.9.peg.4 72 GNHVD------VVEL-DAASH----TSIDDVREIID-QIYYKPI---SARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPH 136 (369)
Q Consensus 72 ~~~~d------~~e~-~~~s~----~~id~ir~l~~-~~~~~p~---~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~ 136 (369)
|+.+- |+.+ =+|+. .++|=-|-|.+ .-.|.|= ++.+.|..|||+--|--+=-|-||=....=--
T Consensus 82 G~~~~~~~~~~~V~LPlgATEDRVvG~LDi~~al~~G~~~FqPGLLA~AhrGiLYiDEVNLLdDhlVD~lLDaaA~G~n- 160 (688)
T TIGR02442 82 GTLPSEQRPVPFVNLPLGATEDRVVGSLDIERALKEGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVN- 160 (688)
T ss_pred CCCCCCCCCCEEEECCCCCCHHHHCCHHHHHHHHHHCHHHHCCCCHHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCCE-
T ss_conf 7753135873588658775233221305489998718566078861754687167852001441477899998764800-
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH---CCCCCCCHHHHCCCCCCC
Q ss_conf 11466506754330356754333210245400135678764310134562566445653---167642001100011100
Q 537021.9.peg.4 137 VKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIAR---ASDGSARDGLSLLDQAIA 213 (369)
Q Consensus 137 ~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~---~s~GslR~Al~lLeq~i~ 213 (369)
.++-||+++.-.+.-.++= ==+|.||.= |||+--.
T Consensus 161 ----------------------------------------~VEREG~S~~Hparf~L~GTMNPEEG~LRPQ--LLDRFGL 198 (688)
T TIGR02442 161 ----------------------------------------RVEREGLSVSHPARFVLIGTMNPEEGDLRPQ--LLDRFGL 198 (688)
T ss_pred ----------------------------------------EEEECCCCHHCHHHHHHHCCCCCCHHHHCHH--HHHHHHC
T ss_conf ----------------------------------------6763574300114553220378522110223--2424401
Q ss_pred HHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH----HHHHHHHHHCCCCC
Q ss_conf 00001210322000135677777888876301363346788765430476213578777534----89999997457412
Q 537021.9.peg.4 214 RCNDKIVTSSVRLMLALADRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEF----THLVTRIKYIPEMA 289 (369)
Q Consensus 214 ~~~~~i~~e~v~~llg~~~~~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~----~rdll~~k~~~~~~ 289 (369)
.++.-...|...-++.++.-.....||..|...|..- -..++..+. ..
T Consensus 199 -------------------------~V~v~~~~d~~~R~Ev~~Rrl~~d~dP~~F~~~~~~~~~~L~~~I~~AR~---lL 250 (688)
T TIGR02442 199 -------------------------CVDVAASRDPEERVEVIRRRLAFDADPEAFAARWAAEQEELRERIAAARS---LL 250 (688)
T ss_pred -------------------------EEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH---HC
T ss_conf -------------------------15502435866899999999754026778899999999999999999997---54
Q ss_pred CCCCCCHHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHH
Q ss_conf 23449988999999998629989999--9999999999983027--8889999999999953
Q 537021.9.peg.4 290 DTLLYSEAENARALQYSKEVSITFLS--RFWQMILKGISEIEGF--SRPMEAVEMVLIRLAH 347 (369)
Q Consensus 290 ~~~~~~~~e~~~i~~~a~~i~~~~L~--~~lq~l~~a~~~Lk~n--~np~L~lE~lLlkL~~ 347 (369)
..+.+++....++.+++..++....- -++--...|.-.+.+- ++..-+-+..-|=|.|
T Consensus 251 p~V~l~d~~~~~I~~lc~~~~V~GhRAdi~~~raArAlAAl~GR~~V~~eDv~~Aa~LvL~H 312 (688)
T TIGR02442 251 PSVRLSDSLLRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAELVLPH 312 (688)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHH
T ss_conf 77658889999999999972888525999999999999877288535377899999875232
No 185
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=3.7e-05 Score=58.14 Aligned_cols=41 Identities=29% Similarity=0.391 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHH
Q ss_conf 92848999999999982876706201078798888999999999
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARS 44 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~ 44 (369)
|+||++++..|.-+..-| |.+||.||||+|||.+|..+..-
T Consensus 181 V~GQ~~AKrAleiAAAGg---HnLl~~GpPGtGKTmla~Rl~~l 221 (490)
T COG0606 181 VKGQEQAKRALEIAAAGG---HNLLLVGPPGTGKTMLASRLPGL 221 (490)
T ss_pred HCCCHHHHHHHHHHHHCC---CCEEEECCCCCCHHHHHHHHHCC
T ss_conf 438499999999998438---86787569988656764231025
No 186
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=97.83 E-value=0.00024 Score=52.21 Aligned_cols=175 Identities=21% Similarity=0.241 Sum_probs=108.7
Q ss_pred CCHHHHHHHHHHHHHCC------------CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 28489999999999828------------767062010787988889999999996146877788665878999779999
Q 537021.9.peg.4 2 IGQKPMIKTLTNAFKSG------------RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAI 69 (369)
Q Consensus 2 iGq~~~~~~l~~~~~~~------------~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i 69 (369)
=|-+.+.+.|+.+++-- +-|...|++||||+|||.+|++.|..- .. +.
T Consensus 544 GGlee~kq~lreaveWPlk~~~~f~k~G~~PP~Gvll~GPPGtGktllakava~es----~a-nf--------------- 603 (980)
T TIGR01243 544 GGLEEVKQELREAVEWPLKAPEVFEKLGIRPPKGVLLFGPPGTGKTLLAKAVATES----GA-NF--------------- 603 (980)
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCC----CC-CE---------------
T ss_conf 66789999998775234440589986078899734874689861688888774014----56-46---------------
Q ss_pred HCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC-------------CCHHHHHHHHHHH--
Q ss_conf 779877822--24533223345556655544565420465237751156648-------------0016789999972--
Q 537021.9.peg.4 70 IRGNHVDVV--ELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS-------------TAAFNGLLKTLEE-- 132 (369)
Q Consensus 70 ~~~~~~d~~--e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~-------------~~a~NaLLK~lEE-- 132 (369)
-+-.-|.++ |+ |. +=..||++.+.+++. -.-|+++||.|.+. -.--|.||--|.-
T Consensus 604 i~v~GPe~lskWv-Ge---se~~ir~if~~arq~----aP~~~f~deidaiaP~rG~~~~~~~vtd~~~nqll~e~dG~~ 675 (980)
T TIGR01243 604 IAVRGPEILSKWV-GE---SEKAIREIFRKARQA----APAIIFFDEIDAIAPARGASLDEKGVTDRIVNQLLTELDGLE 675 (980)
T ss_pred EEECCCHHHHHHH-CH---HHHHHHHHHHHHHHC----CCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 7740731223440-32---479999999986412----873787302111054124421001026899999998640443
Q ss_pred CCCCCCEEEEECCCCCCCHHHHH--HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHCCCCCCCHHH
Q ss_conf 12211146650675433035675--433321024540013567876431013456256-64456531676420011
Q 537021.9.peg.4 133 PPPHVKFIFATTEIRKIPITVLS--RCQRFDLHRISIGDLIELFTKILQEESIEFDPE-AVAMIARASDGSARDGL 205 (369)
Q Consensus 133 Pp~~~~fil~t~~~~~ll~TI~S--Rcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~-~l~~ia~~s~GslR~Al 205 (369)
++.+++.|-+|+.|+-+=|++.- |.-++-+-|.|+++...-+-+|-.+ .+.+.++ .+.-+|+..+|--+.-+
T Consensus 676 ~~~~vvvi~atnrPdi~dPallrPGr~dr~i~vP~Pd~~ar~~ifk~ht~-~~~l~~dv~l~~la~~teGytGadi 750 (980)
T TIGR01243 676 ELSDVVVIAATNRPDILDPALLRPGRLDRLILVPAPDEEARLEIFKIHTR-SMPLAEDVDLEELAKKTEGYTGADI 750 (980)
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHC-CCCCCCCCCHHHHHHHHCCCCCHHH
T ss_conf 43665898615887423610048874121686059855676767655311-1353013438999865168763229
No 187
>pfam00931 NB-ARC NB-ARC domain.
Probab=97.83 E-value=5e-05 Score=57.18 Aligned_cols=184 Identities=17% Similarity=0.166 Sum_probs=86.4
Q ss_pred HHHHHHHHHH--CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCH---HHHHHHCCCCCCCCCC
Q ss_conf 9999999998--2876706201078798888999999999614687778866-58789997---7999977987782224
Q 537021.9.peg.4 7 MIKTLTNAFK--SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPT-VEFEGFGE---HCQAIIRGNHVDVVEL 80 (369)
Q Consensus 7 ~~~~l~~~~~--~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~-~~~c~~c~---~c~~i~~~~~~d~~e~ 80 (369)
-++.|.+.+. .+.+.- .=.+|+.|+||||+|+.+-........ ++.-+ +.....+. -.+.|...- ..
T Consensus 4 ~~~~i~~~L~~~~~~~~v-I~I~G~gGiGKTtLA~~v~~~~~i~~~-F~~~~wv~vs~~~~~~~i~~~i~~~l-----~~ 76 (285)
T pfam00931 4 MIEALIEKLLEMSENLGV-VGIVGMGGVGKTTLAKQIYNDDSVGGH-FDSVAWVVVSKTYTEFRLQKDILQEL-----GL 76 (285)
T ss_pred HHHHHHHHHHCCCCCCEE-EEEECCCCCCHHHHHHHHHCCHHHHHC-CCEEEEEEECCCCCHHHHHHHHHHHH-----CC
T ss_conf 999999998648989539-998899956399999999716556505-98389999797666899999999985-----66
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4 81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF 160 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~ 160 (369)
.. +.....+..++...+.-. ..+++=.+|+|++.. ..-++.+...+-.-..+.. |++||.-..+..+....+..+
T Consensus 77 ~~-~~~~~~~~~~l~~~l~~~-L~~kr~LiVLDDVw~--~~~~~~l~~~~~~~~~gSr-IIvTTR~~~V~~~~~~~~~~~ 151 (285)
T pfam00931 77 DD-SDWVEKNESELAVKIKEA-LLRKRFLLVLDDVWE--KNDWDKIGVPFPDGENGSR-VIVTTRSESVAGRMGGTSKPH 151 (285)
T ss_pred CC-CCCCCCCHHHHHHHHHHH-HCCCCEEEEECCCCC--HHHHHHHHCCCCCCCCCCE-EEEECCCHHHHHHCCCCCCEE
T ss_conf 65-455557899999999999-727966999638887--8999997345757899827-998557589998737888347
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHCCCCCCC
Q ss_conf 10245400135678764310134562---5664456531676420
Q 537021.9.peg.4 161 DLHRISIGDLIELFTKILQEESIEFD---PEAVAMIARASDGSAR 202 (369)
Q Consensus 161 ~f~~l~~~~i~~~L~~i~~~E~i~~d---~~~l~~ia~~s~GslR 202 (369)
++.+++.++-.+.+.+.+-......+ ++...-|++.++|.+-
T Consensus 152 ~l~~L~~~es~~Lf~~~a~~~~~~~~~~l~~~~~~Iv~~C~GlPL 196 (285)
T pfam00931 152 EVESLEPEESWELFSNKVFEKELPPCPELEEVAKEIVEKCKGLPL 196 (285)
T ss_pred ECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHH
T ss_conf 616898799999999984689899976799999999998589949
No 188
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.80 E-value=0.003 Score=44.08 Aligned_cols=174 Identities=13% Similarity=0.251 Sum_probs=112.1
Q ss_pred HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHH---------HCCCCCCCCCCCC-----------CCCCCCHHHHH
Q ss_conf 999999982876706201078798888999999999---------6146877788665-----------87899977999
Q 537021.9.peg.4 9 KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARS---------LNYKTAHIDVPTV-----------EFEGFGEHCQA 68 (369)
Q Consensus 9 ~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~---------l~c~~~~~~~~~~-----------~~c~~c~~c~~ 68 (369)
..|.+-+.++.=.-..+|+-|.|.||||++-.|+.. +.|...+.+ |.. ---+.|++|..
T Consensus 25 ~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dnd-p~rF~~yLi~al~~~~p~~~~~a~~ 103 (894)
T COG2909 25 PRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDND-PARFLSYLIAALQQATPTLGDEAQT 103 (894)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCC-HHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 899999860778438998678877588999999986476554357645776678-8999999999998747232478999
Q ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HHHHCCCCCEEEEECHHHCCCCHHH-HHHHHHHHCCCCCCEEEEECC
Q ss_conf 9779877822245332233455566555445--6542046523775115664800167-899999721221114665067
Q 537021.9.peg.4 69 IIRGNHVDVVELDAASHTSIDDVREIIDQIY--YKPISARFRVYIMDEVQMLSTAAFN-GLLKTLEEPPPHVKFIFATTE 145 (369)
Q Consensus 69 i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~--~~p~~~~~kv~iid~a~~m~~~a~N-aLLK~lEEPp~~~~fil~t~~ 145 (369)
+... ++-+.+..+++.+- +.++.|+ =..++||-|..+..+-+ +|...++--|+|+..|++|.+
T Consensus 104 l~q~-------------~~~~~l~~l~~~L~~Ela~~~~p-l~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~ 169 (894)
T COG2909 104 LLQK-------------HQYVSLESLLSSLLNELASYEGP-LYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRS 169 (894)
T ss_pred HHHH-------------CCCCCHHHHHHHHHHHHHHHCCC-EEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 9873-------------35565999999999998751496-499953532257602899999999719987499997656
Q ss_pred -CCCCCHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCC
Q ss_conf -543303567543332102----4540013567876431013456256644565316764
Q 537021.9.peg.4 146 -IRKIPITVLSRCQRFDLH----RISIGDLIELFTKILQEESIEFDPEAVAMIARASDGS 200 (369)
Q Consensus 146 -~~~ll~TI~SRcq~~~f~----~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~Gs 200 (369)
|.--+.+.|=|=+.+.+. +++.+|..+++.. .-+..+|...++.+-..++|=
T Consensus 170 rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~---~~~l~Ld~~~~~~L~~~teGW 226 (894)
T COG2909 170 RPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLND---RGSLPLDAADLKALYDRTEGW 226 (894)
T ss_pred CCCCCCCCEEEHHHHHHCCHHHHCCCHHHHHHHHHH---CCCCCCCHHHHHHHHHHCCCH
T ss_conf 888764420112167751858645785999999997---189977858898788502439
No 189
>KOG0745 consensus
Probab=97.76 E-value=3.2e-05 Score=58.62 Aligned_cols=88 Identities=24% Similarity=0.361 Sum_probs=54.5
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHH
Q ss_conf 2010787988889999999996146877788665878999779999779877822245332233455-566555445654
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDD-VREIIDQIYYKP 102 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~-ir~l~~~~~~~p 102 (369)
.|+-||.|+|||.+|..+|+.||-. ..-|+.-..-.+|.-=+ .||. |..|...+.+--
T Consensus 229 vLllGPtGsGKTllaqTLAr~ldVP-----------faIcDcTtLTQAGYVGe----------DVEsvi~KLl~~A~~nV 287 (564)
T KOG0745 229 VLLLGPTGSGKTLLAQTLARVLDVP-----------FAICDCTTLTQAGYVGE----------DVESVIQKLLQEAEYNV 287 (564)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-----------EEEECCCCHHHCCCCCC----------CHHHHHHHHHHHCCCCH
T ss_conf 7997788876438999999970887-----------68732552200553454----------29999999999725789
Q ss_pred HCCCCCEEEEECHHHCC--------------CCHHHHHHHHHHH
Q ss_conf 20465237751156648--------------0016789999972
Q 537021.9.peg.4 103 ISARFRVYIMDEVQMLS--------------TAAFNGLLKTLEE 132 (369)
Q Consensus 103 ~~~~~kv~iid~a~~m~--------------~~a~NaLLK~lEE 132 (369)
-.+-.-|+++||+|+++ +.-|.||||.||-
T Consensus 288 ekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745 288 EKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred HHHHCCEEEEEHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 98826738876012441367654544456626699999998526
No 190
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.68 E-value=0.00091 Score=47.93 Aligned_cols=112 Identities=21% Similarity=0.248 Sum_probs=56.5
Q ss_pred HHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99828767062010787988889999999996146877788665878999779999779877822245332233455566
Q 537021.9.peg.4 14 AFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVRE 93 (369)
Q Consensus 14 ~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~ 93 (369)
.+.+=+.-.-.++.||||+|||-+|+.||.+|..+... +..+.-+...--+-..+..|--|+-... ...-| -..+
T Consensus 187 ~~~sLktKknvIL~G~pGtGKT~lAk~lA~~l~g~~~~-~rv~~VqfhpsysYEDfi~Gyrp~~~gf--~~~~G--~f~~ 261 (459)
T PRK11331 187 ILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAP-QRVNMVQFHQSYSYEDFIQGYRPNGVGF--RRKDG--IFYN 261 (459)
T ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCC-CCEEEEEECCCCCHHHHHCCCCCCCCCC--EECCC--HHHH
T ss_conf 99985458827965899988789999999997078877-8468998358866178764605688861--32683--6999
Q ss_pred HHHHHHHHHHCCCCCEEEEECHHHCCCCH-HHHHHHHHHH
Q ss_conf 55544565420465237751156648001-6789999972
Q 537021.9.peg.4 94 IIDQIYYKPISARFRVYIMDEVQMLSTAA-FNGLLKTLEE 132 (369)
Q Consensus 94 l~~~~~~~p~~~~~kv~iid~a~~m~~~a-~NaLLK~lEE 132 (369)
+++.+.--|. ..=++||||..+=|.+- +--||-.||.
T Consensus 262 ~~~~A~~~p~--~~y~~iideinr~~~~~~fgel~~liE~ 299 (459)
T PRK11331 262 FCQQAKEQPE--KKYVFIIDEINRANLSKVFGEVMMLMEH 299 (459)
T ss_pred HHHHHHHCCC--CCEEEEEEHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999984989--8769998432033889999999999641
No 191
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I; InterPro: IPR011775 This entry represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll . This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. It is also found in certain archaea not known to make chlorins.; GO: 0005524 ATP binding, 0016851 magnesium chelatase activity, 0006779 porphyrin biosynthetic process.
Probab=97.67 E-value=8.5e-05 Score=55.52 Aligned_cols=164 Identities=21% Similarity=0.321 Sum_probs=101.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHH-------CCCCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf 928489999999999828767062010787988889999999996-------1468777886658789997799997798
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSL-------NYKTAHIDVPTVEFEGFGEHCQAIIRGN 73 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l-------~c~~~~~~~~~~~~c~~c~~c~~i~~~~ 73 (369)
||||++.+..|-=.+-.-+|+- -|.-|.+||||+|+.|+||.-| +|.-+.... .+-+.|+.|+...+.+
T Consensus 6 IVGQ~emKlAllL~vidP~IGG-VmvmGdRGTgKSTavRALAalLP~IkaVagcP~n~~Ps---~~~~~c~e~r~~~~~~ 81 (340)
T TIGR02030 6 IVGQEEMKLALLLTVIDPKIGG-VMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSAPS---DREELCEEVRILEDSS 81 (340)
T ss_pred EECHHHHHHHHHHEEECCCCCE-EEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCC---CCCCCCHHHHHHHHCC
T ss_conf 6416888777752000688562-88867789835689999997499407861768788888---8613576777753126
Q ss_pred ----CCCCCCC-----C---CCCC----CCHHHHHHHHHHH-HHHHH---CCCCCEEEEECHHHCCCCHHHHHH------
Q ss_conf ----7782224-----5---3322----3345556655544-56542---046523775115664800167899------
Q 537021.9.peg.4 74 ----HVDVVEL-----D---AASH----TSIDDVREIIDQI-YYKPI---SARFRVYIMDEVQMLSTAAFNGLL------ 127 (369)
Q Consensus 74 ----~~d~~e~-----~---~~s~----~~id~ir~l~~~~-~~~p~---~~~~kv~iid~a~~m~~~a~NaLL------ 127 (369)
.|-+++. | |+.. ..+|=-|.|-+-. .|.|- .+.+=+..|||+--|--.=-.-||
T Consensus 82 Gkt~~~~~i~~pvpvVDLPLGaTEDRVcGtlDIerALt~GvkAFePGLLArANRG~LYiDEVNLLeDHlVDvLLDvAasG 161 (340)
T TIGR02030 82 GKTKKLAVIEKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGYLYIDEVNLLEDHLVDVLLDVAASG 161 (340)
T ss_pred CCCCCCEEEECCCCEEECCCCCCCCCEECHHHHHHHHHCCCCCCCCCCHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCC
T ss_conf 86567515515765364798862131344024767750472103663046661784255210001245665665220478
Q ss_pred -HHHHHCCCC------CCEEEEE-CCCC--CCCHHHHHHH-HHHHCCCCCCHHH
Q ss_conf -999721221------1146650-6754--3303567543-3321024540013
Q 537021.9.peg.4 128 -KTLEEPPPH------VKFIFAT-TEIR--KIPITVLSRC-QRFDLHRISIGDL 170 (369)
Q Consensus 128 -K~lEEPp~~------~~fil~t-~~~~--~ll~TI~SRc-q~~~f~~l~~~~i 170 (369)
.++|. ++ ..|+|+. =||+ .|=|=+.=|- .+...+.+.+-+.
T Consensus 162 ~NvVER--EG~SiRHPARFVLVGSGNPEEGeLRPQLLDRFGlhaeirt~rdve~ 213 (340)
T TIGR02030 162 VNVVER--EGVSIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVEE 213 (340)
T ss_pred CEEEEE--CCEEEECCCCEEEECCCCCCCCCCCCHHHHHCCCEEEEECCCCHHH
T ss_conf 305863--5602303763587157888766667401524465278722677222
No 192
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=97.63 E-value=0.00011 Score=54.65 Aligned_cols=114 Identities=27% Similarity=0.332 Sum_probs=60.3
Q ss_pred HHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHC----CCCCCCCCCCCCCCCCCHHHHHHHCCCCCC-CCCCC
Q ss_conf 9999999998287670620107879888899999999961----468777886658789997799997798778-22245
Q 537021.9.peg.4 7 MIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLN----YKTAHIDVPTVEFEGFGEHCQAIIRGNHVD-VVELD 81 (369)
Q Consensus 7 ~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~----c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d-~~e~~ 81 (369)
+...-.+.++.|+-=| |.||.|+||||+|+.+|+.+. .-+++....+.+.-|.-.. ....+-.| ++.
T Consensus 10 v~~R~l~yL~~G~PvH---l~GPaG~GKT~LA~hvA~~r~RPV~l~~Gd~eL~~~DLvG~~~g---~~~~kv~Dqfih-- 81 (265)
T TIGR02640 10 VTSRALRYLKSGYPVH---LRGPAGTGKTTLAMHVARKRDRPVVLINGDAELTTSDLVGSYAG---YTRKKVVDQFIH-- 81 (265)
T ss_pred HHHHHHHHHCCCCCEE---EECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC---CEEEEEEECCEE--
T ss_conf 9998766322788667---44788855689999999736896899865823265442315467---522223201211--
Q ss_pred CCCCCC-HHHHHH-HHH-HHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHH
Q ss_conf 332233-455566-555-445654204652377511566480016789999972
Q 537021.9.peg.4 82 AASHTS-IDDVRE-IID-QIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEE 132 (369)
Q Consensus 82 ~~s~~~-id~ir~-l~~-~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEE 132 (369)
|-.| -|++++ ..+ .+-.+ .+-+| -.|-||.-+=.+.+-|-||=.+||
T Consensus 82 --nV~K~~d~~~~~W~D~rLt~A-v~eG~-TLVYdEF~RskP~~nNVLLSvlEE 131 (265)
T TIGR02640 82 --NVVKLEDIVRQNWVDNRLTLA-VREGF-TLVYDEFTRSKPETNNVLLSVLEE 131 (265)
T ss_pred --EEECCCCCCCCCCCCCHHHHH-HHCCC-EEEECCCCCCCCHHHHHHHHHHHH
T ss_conf --134251220026678357899-75697-276647578862045656755552
No 193
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=97.62 E-value=0.00028 Score=51.70 Aligned_cols=137 Identities=15% Similarity=0.100 Sum_probs=65.6
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCC-CCCCCCCCCCCCCCCHHHHHHHHH-HH
Q ss_conf 7062010787988889999999996146877788665878999779999779-877822245332233455566555-44
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRG-NHVDVVELDAASHTSIDDVREIID-QI 98 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~-~~~d~~e~~~~s~~~id~ir~l~~-~~ 98 (369)
|+-.+|.||.|+||||++--+|..+.-... ....-.|.+-.. -.++.- .+.+...+.--.....++..++.. -+
T Consensus 1 P~vi~lvGptGvGKTTTiaKLAa~~~~~~~---~V~lit~Dt~R~-gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l 76 (196)
T pfam00448 1 PNVILLVGLQGSGKTTTIAKLAAYLKKQGK---KVLLVAADTFRA-AAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAV 76 (196)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCC---EEEEEECCCCCH-HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
T ss_conf 969999899999889999999999997799---289997587768-8999999999863981781487778789999999
Q ss_pred HHHHHCCCCCEEEEECHHHCCCCHH--HHHHHHHHH-CCCCCCEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 5654204652377511566480016--789999972-122111466506754330356754333210
Q 537021.9.peg.4 99 YYKPISARFRVYIMDEVQMLSTAAF--NGLLKTLEE-PPPHVKFIFATTEIRKIPITVLSRCQRFDL 162 (369)
Q Consensus 99 ~~~p~~~~~kv~iid~a~~m~~~a~--NaLLK~lEE-Pp~~~~fil~t~~~~~ll~TI~SRcq~~~f 162 (369)
... ...++.+++||-|-+...+.. .-|-+..+. +|..++++|.++.-..-+..+..+...+.+
T Consensus 77 ~~~-~~~~~D~IlIDTaGr~~~d~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~ 142 (196)
T pfam00448 77 EKA-KAENYDVVLVDTAGRLQNDKNLMDELKKIKRVIAPDEVLLVLDATTGQNALNQAKAFNEAVGI 142 (196)
T ss_pred HHH-HHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 998-846899999989998747677899999998522873028998567782137899987600477
No 194
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=97.59 E-value=0.0067 Score=41.50 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=19.8
Q ss_pred CCCCCEEEHHCCCCCCCHHHHHHHHHH
Q ss_conf 287670620107879888899999999
Q 537021.9.peg.4 17 SGRIAQSYMLSGTRGIGKTTTARIIAR 43 (369)
Q Consensus 17 ~~~~~ha~lf~G~~G~GK~~~a~~~A~ 43 (369)
.+.++|. +..||.|.|||++.-.++.
T Consensus 423 ~~d~GHt-~I~G~TGsGKTtll~fL~a 448 (789)
T PRK13853 423 EHDVGMT-AIFGPIGRGKTTLMTFILA 448 (789)
T ss_pred CCCCCCE-EEECCCCCCHHHHHHHHHH
T ss_conf 7887744-8878999988999999999
No 195
>PRK12377 putative replication protein; Provisional
Probab=97.58 E-value=0.00053 Score=49.65 Aligned_cols=98 Identities=15% Similarity=0.210 Sum_probs=57.0
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH---
Q ss_conf 70620107879888899999999961468777886658789997799997798778222453322334555665554---
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQ--- 97 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~--- 97 (369)
+|.++|+||||+|||-+|-+++..+ |..+... +.+..+. =++++++-.++
T Consensus 101 ~~NlIf~G~pGtGKTHLA~AIg~~a-~~~G~sV------------------------lF~t~~d--Lv~~L~~a~~~g~~ 153 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRL-LAKGRSV------------------------IVVTVPD--VMSRLHESYDNGQS 153 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH-HHCCCEE------------------------EEEEHHH--HHHHHHHHHHCCCC
T ss_conf 8608998999987889999999999-9879969------------------------9988999--99999999984850
Q ss_pred -HHHHHHCCCCCEEEEECH--HHCCCCHHHHHHHHHHH-CCCCCCEEEEECC
Q ss_conf -456542046523775115--66480016789999972-1221114665067
Q 537021.9.peg.4 98 -IYYKPISARFRVYIMDEV--QMLSTAAFNGLLKTLEE-PPPHVKFIFATTE 145 (369)
Q Consensus 98 -~~~~p~~~~~kv~iid~a--~~m~~~a~NaLLK~lEE-Pp~~~~fil~t~~ 145 (369)
-.+.-.-.++.+.||||. ..++..+++-|-..+.+ +-...-.|++|+-
T Consensus 154 ~~k~l~~l~~~dLLIIDElG~~~~s~~~~~llfqlI~~Ry~~~ks~IiTTNL 205 (248)
T PRK12377 154 GEKFLQELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred HHHHHHHHHCCCEEEEHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 9999999733898986000578898679999999999998557986897589
No 196
>PRK09183 transposase/IS protein; Provisional
Probab=97.57 E-value=0.00017 Score=53.21 Aligned_cols=99 Identities=17% Similarity=0.149 Sum_probs=60.5
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-
Q ss_conf 7062010787988889999999996146877788665878999779999779877822245332233455566555445-
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIY- 99 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~- 99 (369)
++..+|.||+|+|||-+|-+++... |..+.....+ +-+|+ +++.+.-...-+
T Consensus 101 ~~Nvil~G~~GtGKThLA~Alg~~A-~~~G~~v~f~----------------~~~~L----------~~~L~~a~~~~~~ 153 (258)
T PRK09183 101 NENIVLLGPSGVGKTHLAIALGYEA-VRAGIKVRFT----------------TAADL----------LLQLSTAQRQGRY 153 (258)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH-HHCCCEEEEE----------------EHHHH----------HHHHHHHHHCCCH
T ss_conf 8867998999986899999999999-9879939997----------------89999----------9999999876859
Q ss_pred ---HHHHCCCCCEEEEECHH--HCCCCHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf ---65420465237751156--648001678999997212211146650675
Q 537021.9.peg.4 100 ---YKPISARFRVYIMDEVQ--MLSTAAFNGLLKTLEEPPPHVKFIFATTEI 146 (369)
Q Consensus 100 ---~~p~~~~~kv~iid~a~--~m~~~a~NaLLK~lEEPp~~~~fil~t~~~ 146 (369)
++-.-.++.+.||||.- .++...++-|..++++=-+..-.|++|+-|
T Consensus 154 ~~~l~r~l~~~dLLIiDdlG~~~~~~~~~~~lfeli~~Rye~~S~IiTSn~~ 205 (258)
T PRK09183 154 KTTLQRGVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGAMILTSNLP 205 (258)
T ss_pred HHHHHHHHCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 9999987434651443133154688889999999999985767789988999
No 197
>KOG1808 consensus
Probab=97.57 E-value=0.00016 Score=53.42 Aligned_cols=149 Identities=21% Similarity=0.317 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC--
Q ss_conf 899999999998287670620107879888899999999961468777886658789997799997798778222453--
Q 537021.9.peg.4 5 KPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDA-- 82 (369)
Q Consensus 5 ~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~-- 82 (369)
+.....+.+++..|+.| .||-||.|+|||+++..+|++. |..|.+|..-.|.|+.|.=+
T Consensus 426 q~~la~~~~a~~~~~~p--illqG~tssGKtsii~~la~~~-----------------g~~~vrinnhehtd~qeyig~y 486 (1856)
T KOG1808 426 QKNLADLARAISSGKFP--ILLQGPTSSGKTSIIKELARAT-----------------GKNIVRINNHEHTDLQEYIGTY 486 (1856)
T ss_pred HHHHHHHHHHHHCCCCC--EEEECCCCCCCHHHHHHHHHHH-----------------CCCCEEHHCCCCCHHHHHHHHH
T ss_conf 98899999999658998--6775476768115999999985-----------------4673420024633399998665
Q ss_pred -CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHH------CCCCC------CE-EEEECCCC-
Q ss_conf -32233455566555445654204652377511566480016789999972------12211------14-66506754-
Q 537021.9.peg.4 83 -ASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEE------PPPHV------KF-IFATTEIR- 147 (369)
Q Consensus 83 -~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEE------Pp~~~------~f-il~t~~~~- 147 (369)
++.++--..|+... .-....| ..+++|+.+.-+.+-.+||.++++. |-... -| ++.|.+|.
T Consensus 487 ~~~~~g~l~freg~L--V~Alr~G--~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~ 562 (1856)
T KOG1808 487 VADDNGDLVFREGVL--VQALRNG--DWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPG 562 (1856)
T ss_pred EECCCCCEEEEHHHH--HHHHHHC--CEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHCCCCC
T ss_conf 007889725534689--9998708--779840201240678999984045404125634432322470123454307766
Q ss_pred ------CCCHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf ------33035675433321024540013567876
Q 537021.9.peg.4 148 ------KIPITVLSRCQRFDLHRISIGDLIELFTK 176 (369)
Q Consensus 148 ------~ll~TI~SRcq~~~f~~l~~~~i~~~L~~ 176 (369)
-+.-.+++|-+-++|.-++.+++..-+..
T Consensus 563 ~y~grk~lsRa~~~rf~e~~f~~~~e~e~~~i~~~ 597 (1856)
T KOG1808 563 TYGGRKILSRALRNRFIELHFDDIGEEELEEILEH 597 (1856)
T ss_pred CCCHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHCC
T ss_conf 65315665531444002353552571455556402
No 198
>KOG0730 consensus
Probab=97.55 E-value=0.00082 Score=48.24 Aligned_cols=169 Identities=18% Similarity=0.285 Sum_probs=100.5
Q ss_pred CHHHHHHHHHHHHH-----------CC-CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 84899999999998-----------28-7670620107879888899999999961468777886658789997799997
Q 537021.9.peg.4 3 GQKPMIKTLTNAFK-----------SG-RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAII 70 (369)
Q Consensus 3 Gq~~~~~~l~~~~~-----------~~-~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~ 70 (369)
|++.++..|+.+|. -| .-|...||+||||||||++|+++|..--|.--... ++.-...
T Consensus 438 GlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvk---------gpEL~sk- 507 (693)
T KOG0730 438 GLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVK---------GPELFSK- 507 (693)
T ss_pred CHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEECC---------CHHHHHH-
T ss_conf 789999999999861665659998725788754777789986247899998646358726415---------7899877-
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCH-----------HHHHHHHHHHCC-CCCC
Q ss_conf 7987782224533223345556655544565420465237751156648001-----------678999997212-2111
Q 537021.9.peg.4 71 RGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAA-----------FNGLLKTLEEPP-PHVK 138 (369)
Q Consensus 71 ~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a-----------~NaLLK~lEEPp-~~~~ 138 (369)
++ |. +=.-+|++-..++..+- -|+++||+|.+..+= -|.||+-|.=-- ...+
T Consensus 508 --------~v-Ge---SEr~ir~iF~kAR~~aP----~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V 571 (693)
T KOG0730 508 --------YV-GE---SERAIREVFRKARQVAP----CIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNV 571 (693)
T ss_pred --------HC-CC---HHHHHHHHHHHHHHCCC----EEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCE
T ss_conf --------51-82---58999999999862698----3774466666663047875514899999999870041014708
Q ss_pred EEEE-ECCCCCCCHHHHH--HH-HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHCCCC
Q ss_conf 4665-0675433035675--43-3321024540013567876431013456256-64456531676
Q 537021.9.peg.4 139 FIFA-TTEIRKIPITVLS--RC-QRFDLHRISIGDLIELFTKILQEESIEFDPE-AVAMIARASDG 199 (369)
Q Consensus 139 fil~-t~~~~~ll~TI~S--Rc-q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~-~l~~ia~~s~G 199 (369)
||+. ||-|+.|=+.+.. |- +++++++++.+-=.+.|+.- .++++++++ .++.+|...+|
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~--~kkmp~~~~vdl~~La~~T~g 635 (693)
T KOG0730 572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQC--AKKMPFSEDVDLEELAQATEG 635 (693)
T ss_pred EEEECCCCHHHCCHHHCCCCCCCEEEEECCCCHHHHHHHHHHH--HHCCCCCCCCCHHHHHHHHCC
T ss_conf 9995058810126977598653305751583478899999999--733999865569999998546
No 199
>PRK06526 transposase; Provisional
Probab=97.53 E-value=0.00031 Score=51.36 Aligned_cols=101 Identities=21% Similarity=0.235 Sum_probs=60.4
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC-CCCCCCCCCHHHHHHHHHHHH
Q ss_conf 7062010787988889999999996146877788665878999779999779877822-245332233455566555445
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVV-ELDAASHTSIDDVREIIDQIY 99 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~-e~~~~s~~~id~ir~l~~~~~ 99 (369)
++..+|.||+|+|||-+|-+++... |..+.... +-++. +++ ++..+... ..+...
T Consensus 98 ~~Nvil~G~~GtGKThLA~Alg~~A-~~~G~~v~-----f~~~~-----------~L~~~L~~a~~~-----g~~~~~-- 153 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA-CQAGHRVL-----FATAA-----------QWVARLAAAHHA-----GRLQDE-- 153 (254)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH-HHCCCCEE-----EEEHH-----------HHHHHHHHHHHC-----CCHHHH--
T ss_conf 8878998999986899999999999-98699679-----98779-----------999999998855-----809999--
Q ss_pred HHHHCCCCCEEEEECHH--HCCCCHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 65420465237751156--648001678999997212211146650675
Q 537021.9.peg.4 100 YKPISARFRVYIMDEVQ--MLSTAAFNGLLKTLEEPPPHVKFIFATTEI 146 (369)
Q Consensus 100 ~~p~~~~~kv~iid~a~--~m~~~a~NaLLK~lEEPp~~~~fil~t~~~ 146 (369)
++ .-.++.+.||||.- .++...++-|...+++=-++.-.|++++-|
T Consensus 154 ~~-~l~~~dLLIiDe~g~~~~~~~~a~~lf~li~~Rye~~S~IiTSn~~ 201 (254)
T PRK06526 154 LV-KLGRIPLLIVDEVGYIPFEAEAANLFFQLVSSRYERASLIVTSNKP 201 (254)
T ss_pred HH-HHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 99-8513687765021364478899999999999997458867665898
No 200
>PRK08116 hypothetical protein; Validated
Probab=97.53 E-value=0.00088 Score=48.03 Aligned_cols=114 Identities=19% Similarity=0.212 Sum_probs=59.2
Q ss_pred HHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC-CCCC-CCCC
Q ss_conf 9999998287670620107879888899999999961468777886658789997799997798778222-4533-2233
Q 537021.9.peg.4 10 TLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVE-LDAA-SHTS 87 (369)
Q Consensus 10 ~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e-~~~~-s~~~ 87 (369)
...+.-..+.-+..++|+||+|+|||-+|-++|..|. +.+.. +. --+.|+++. +-.+ ++.+
T Consensus 97 Y~~~f~~~~~~~~GLll~G~~GtGKThLa~aIa~~l~-~~g~~---V~-------------~~~~~~ll~~lk~~~~~~~ 159 (262)
T PRK08116 97 YVKKFEEMKKESVGLLLWGSPGNGKTYLAAAIANELI-EKGVP---VV-------------FVNVPELLNRIKSTYNSEG 159 (262)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHH-HCCCE---EE-------------EEEHHHHHHHHHHHHHCCC
T ss_conf 9998987364686189989899989999999999999-87993---99-------------9889999999999986356
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECH--HHCCCCHHHHHHHHHHHC-CCCCCEEEEECCC
Q ss_conf 4555665554456542046523775115--664800167899999721-2211146650675
Q 537021.9.peg.4 88 IDDVREIIDQIYYKPISARFRVYIMDEV--QMLSTAAFNGLLKTLEEP-PPHVKFIFATTEI 146 (369)
Q Consensus 88 id~ir~l~~~~~~~p~~~~~kv~iid~a--~~m~~~a~NaLLK~lEEP-p~~~~fil~t~~~ 146 (369)
-+.-.++++. + ...-+.||||. +..|.-+..-|.-++..= -.+--.|++|+-+
T Consensus 160 ~~~~~e~l~~-----l-~~~dLLIiDDlG~e~~t~w~~e~lf~IIn~Ry~~~kptIiTTNl~ 215 (262)
T PRK08116 160 KEDENEIIRA-----L-DNADLLILDDLGAEKDTEWVREKLYNIIDSRYRKGLPTIFTTNLS 215 (262)
T ss_pred CHHHHHHHHH-----H-HCCCEEEEEHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 1019999998-----6-129989983221456987899999999999997699989987999
No 201
>smart00350 MCM minichromosome maintenance proteins.
Probab=97.52 E-value=0.00055 Score=49.53 Aligned_cols=131 Identities=18% Similarity=0.249 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHHHC-------------CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 92848999999999982-------------87670620107879888899999999961468777886658789997799
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKS-------------GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQ 67 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~-------------~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~ 67 (369)
|-|++.++..|-=++-. |. .| .|+.|.||+||+.+-+..++-- +...+ .+|+..+-.
T Consensus 205 I~G~~~vK~allL~L~GG~~~~~~~g~~~Rg~-ih-iLLvGDPGtgKSqlLk~~~~ia----prsvy----tsG~gsS~a 274 (509)
T smart00350 205 IYGHEDIKKAILLLLFGGVHKNLPDGMKIRGD-IN-ILLLGDPGTAKSQLLKYVEKTA----PRAVY----TTGKGSSAV 274 (509)
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCEECCC-EE-EEEECCCCCCHHHHHHHHHHHC----CCEEE----EECCCCCCC
T ss_conf 23878899999999708876648988504154-14-9984699823629999999858----86068----734445557
Q ss_pred HHHCCCCCCCCCCCCCCCCCHHHH-HH-HHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 997798778222453322334555-66-5554456542046523775115664800167899999721221114665067
Q 537021.9.peg.4 68 AIIRGNHVDVVELDAASHTSIDDV-RE-IIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTE 145 (369)
Q Consensus 68 ~i~~~~~~d~~e~~~~s~~~id~i-r~-l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~ 145 (369)
.. .++ ..-|.. .+ .++-=.+ .-++.-|+.|||.|+|+.+..+||+-.|| .+++-|=
T Consensus 275 GL-----------Taa--v~rd~~~ge~~leaGAL--VlAD~GiccIDEfdKm~~~dr~alhEaME---QQtisia---- 332 (509)
T smart00350 275 GL-----------TAA--VTRDPETREFTLEGGAL--VLADNGVCCIDEFDKMDDSDRTAIHEAME---QQTISIA---- 332 (509)
T ss_pred CC-----------EEE--EEECCCCCCEEECCCCE--ECCCCCEEEEEEHHHCCHHHHHHHHHHHH---HCEEEEE----
T ss_conf 70-----------689--99817888378725641--20567547852132078778999999997---4877874----
Q ss_pred CCCCCHHHHHHHHHHHCC
Q ss_conf 543303567543332102
Q 537021.9.peg.4 146 IRKIPITVLSRCQRFDLH 163 (369)
Q Consensus 146 ~~~ll~TI~SRcq~~~f~ 163 (369)
-.-+..|+.+||-++.-.
T Consensus 333 KaGi~~tL~aR~sVlAAa 350 (509)
T smart00350 333 KAGITTTLNARCSVLAAA 350 (509)
T ss_pred CCCEEEEEECCCEEEEEE
T ss_conf 375179985573599865
No 202
>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=97.51 E-value=0.00067 Score=48.91 Aligned_cols=146 Identities=25% Similarity=0.331 Sum_probs=94.0
Q ss_pred EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC----CCCCHHHHHHHHHH
Q ss_conf 06201078798888999999999614687778866587899977999977987782224533----22334555665554
Q 537021.9.peg.4 22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA----SHTSIDDVREIIDQ 97 (369)
Q Consensus 22 ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~----s~~~id~ir~l~~~ 97 (369)
| .-|+|.||+||||.|...|+.|.-..- +..|.-.-+..=|-. +|+ .-..+++++
T Consensus 60 h-m~ftG~PGtGkttva~~m~~~l~~lGy------------------~r~G~~~~~trddlvGqy~Ght-aPktke~lk- 118 (284)
T TIGR02880 60 H-MSFTGNPGTGKTTVALRMAQILHRLGY------------------VRKGHLVSVTRDDLVGQYIGHT-APKTKEVLK- 118 (284)
T ss_pred E-EEECCCCCCCHHHHHHHHHHHHHHCCC------------------CCCCCEEEEEHHHHHHHHHCCC-CCHHHHHHH-
T ss_conf 6-775168987248999999999987154------------------0036267853001311221257-722689998-
Q ss_pred HHHHHHCCCCCEEEEECHHHC---------CCCHHHHHHHHHHHCCCCCCEEEEECC-----CCCCCHHHHHHH-HHHHC
Q ss_conf 456542046523775115664---------800167899999721221114665067-----543303567543-33210
Q 537021.9.peg.4 98 IYYKPISARFRVYIMDEVQML---------STAAFNGLLKTLEEPPPHVKFIFATTE-----IRKIPITVLSRC-QRFDL 162 (369)
Q Consensus 98 ~~~~p~~~~~kv~iid~a~~m---------~~~a~NaLLK~lEEPp~~~~fil~t~~-----~~~ll~TI~SRc-q~~~f 162 (369)
+ ..|+ |.+||||--+ -.+|-.-||..+|.--...+.||+.-. --.--|-+.||. .|+.|
T Consensus 119 ---~-a~GG--vlfideayyly~P~nerdyG~eaieillq~men~r~~lvvi~aGy~~rm~~f~~snPG~~sr~a~h~~f 192 (284)
T TIGR02880 119 ---R-AMGG--VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGLSSRVAHHVDF 192 (284)
T ss_pred ---H-HCCC--EEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCHHHHHHHHCCC
T ss_conf ---7-4287--366422033217764102237999999998723655378887170788888751178624677643158
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 24540013567876431013456256644565
Q 537021.9.peg.4 163 HRISIGDLIELFTKILQEESIEFDPEAVAMIA 194 (369)
Q Consensus 163 ~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia 194 (369)
+-.+.+++...-..++...++.++.++-..+.
T Consensus 193 Pdy~~~~l~~ia~~~l~~~~y~~~~~~~~~~~ 224 (284)
T TIGR02880 193 PDYSEEELLAIAELMLEEQQYRLSAEAEEALA 224 (284)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 88776789999999886541211188999999
No 203
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491 This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome. ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=97.50 E-value=0.00013 Score=54.05 Aligned_cols=46 Identities=33% Similarity=0.576 Sum_probs=38.5
Q ss_pred CCCHHHHHHH----HHHHHHCCC---------CCEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 9284899999----999998287---------670620107879888899999999961
Q 537021.9.peg.4 1 MIGQKPMIKT----LTNAFKSGR---------IAQSYMLSGTRGIGKTTTARIIARSLN 46 (369)
Q Consensus 1 iiGq~~~~~~----l~~~~~~~~---------~~ha~lf~G~~G~GK~~~a~~~A~~l~ 46 (369)
||||+.+++. |+|-+++-+ .|--.|--||.|+|||-.||.+||-.+
T Consensus 14 IiGQ~~AKk~VAiALrNRyrR~~L~~~L~~EV~PKNILMiGpTGVGKTEIARRlAKL~~ 72 (463)
T TIGR00390 14 IIGQDEAKKAVAIALRNRYRRSQLEEELKDEVTPKNILMIGPTGVGKTEIARRLAKLAN 72 (463)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 20636678899999886677612871113565874304327889854479999999844
No 204
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.47 E-value=0.00086 Score=48.11 Aligned_cols=120 Identities=21% Similarity=0.260 Sum_probs=64.1
Q ss_pred CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHH----
Q ss_conf 2876706201078798888999999999614687778866587899977999977987782224533223345556----
Q 537021.9.peg.4 17 SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVR---- 92 (369)
Q Consensus 17 ~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir---- 92 (369)
+|.-+|-++.-|+.|+||+|+|+.+|+.|.|.--+.+. .-.-.+-.++.+|.-.+ |+-|
T Consensus 4 ~~~~~~iiVVMGVsGsGKSTig~~LA~~l~~~fiegDd-----fHp~~Ni~KM~~GiPLt------------D~DR~pWL 66 (177)
T PRK11545 4 TNHDHHIYVLMGVSGSGKSAVASAVAHQLHAAFLDGDF-----LHPRCNIEKMASGEPLN------------DDDRKPWL 66 (177)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEECCCC-----CCCHHHHHHHHCCCCCC------------HHHHHHHH
T ss_conf 67887599998479899999999999981998553655-----58999999862899998------------68889999
Q ss_pred -HHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf -65554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4 93 -EIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF 160 (369)
Q Consensus 93 -~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~ 160 (369)
.|.+.+.-. ...+.-.++--. .|.+.= +..|-+..+++.||.+.-+.+-+..-+..|--||
T Consensus 67 ~~l~~~~~~~-~~~~~~~VlaCS--ALKr~Y----Rd~Lr~~~~~~~fv~L~g~~~~i~~Rl~~R~~HF 128 (177)
T PRK11545 67 QALNDAAFAM-QRTNKVSLIVCS--ALKKHY----RDLLREGNPNLSFIYLKGDFDVIESRLKARKGHF 128 (177)
T ss_pred HHHHHHHHHH-HCCCCCEEEEEC--CCCHHH----HHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCC
T ss_conf 9999999999-726996699870--111999----9999806997599997299999999997464689
No 205
>KOG0652 consensus
Probab=97.46 E-value=0.0014 Score=46.61 Aligned_cols=167 Identities=22% Similarity=0.272 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHHH-----------C-CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 84899999999998-----------2-87670620107879888899999999961468777886658789997799997
Q 537021.9.peg.4 3 GQKPMIKTLTNAFK-----------S-GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAII 70 (369)
Q Consensus 3 Gq~~~~~~l~~~~~-----------~-~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~ 70 (369)
|-+.-++.|..++. - =+-|...|.+||||+|||.+||++|..-|.+-....+|.. .++.
T Consensus 175 GldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL---------VQMf 245 (424)
T KOG0652 175 GLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL---------VQMF 245 (424)
T ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHHCCHHH---------HHHH
T ss_conf 5789999999886145656878874688899722765799975779999998740106887326477---------7665
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC-----------CCHHHHHHHHH---HH--CC
Q ss_conf 7987782224533223345556655544565420465237751156648-----------00167899999---72--12
Q 537021.9.peg.4 71 RGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS-----------TAAFNGLLKTL---EE--PP 134 (369)
Q Consensus 71 ~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~-----------~~a~NaLLK~l---EE--Pp 134 (369)
-| ||| .-+|+-. .+. -+-..-|++|||.|..- ++-|-..|-.| .- |.
T Consensus 246 IG--------dGA-----kLVRDAF---aLA-KEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~ 308 (424)
T KOG0652 246 IG--------DGA-----KLVRDAF---ALA-KEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD 308 (424)
T ss_pred HC--------CHH-----HHHHHHH---HHH-HCCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 33--------418-----8999999---875-334983899730023233436531234389999999999860489975
Q ss_pred CCCCEEEEECCCCCCCHHHHHHH----HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHCCC
Q ss_conf 21114665067543303567543----33210245400135678764310134562566-445653167
Q 537021.9.peg.4 135 PHVKFIFATTEIRKIPITVLSRC----QRFDLHRISIGDLIELFTKILQEESIEFDPEA-VAMIARASD 198 (369)
Q Consensus 135 ~~~~fil~t~~~~~ll~TI~SRc----q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~-l~~ia~~s~ 198 (369)
..+..| ++|+--.++.+-.=|. ..+.| |.+.++-..++.+|-.. ++...++. .+-+|+..+
T Consensus 309 ~~vKvi-AATNRvDiLDPALlRSGRLDRKIEf-P~Pne~aRarIlQIHsR-KMnv~~DvNfeELaRsTd 374 (424)
T KOG0652 309 DRVKVI-AATNRVDILDPALLRSGRLDRKIEF-PHPNEEARARILQIHSR-KMNVSDDVNFEELARSTD 374 (424)
T ss_pred CCEEEE-EECCCCCCCCHHHHHCCCCCCCCCC-CCCCHHHHHHHHHHHHH-CCCCCCCCCHHHHHHCCC
T ss_conf 626788-5216434348888644664444348-89977898899988640-057788879899853335
No 206
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=97.42 E-value=9.1e-05 Score=55.28 Aligned_cols=145 Identities=17% Similarity=0.173 Sum_probs=68.2
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCCC-CCCCCHH---HHHHHCCCCCCCCCCCCCC-----CCCH--HHH
Q ss_conf 201078798888999999999614687-77886658-7899977---9999779877822245332-----2334--555
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKTA-HIDVPTVE-FEGFGEH---CQAIIRGNHVDVVELDAAS-----HTSI--DDV 91 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~-~~~~~~~~-~c~~c~~---c~~i~~~~~~d~~e~~~~s-----~~~i--d~i 91 (369)
++++|+||+||||+.+-++..|--..- -....|.+ -.+.... +..+..|..--+-..+..+ +..| +..
T Consensus 2 i~ITG~pGvGKTTli~kv~~~l~~~~~~v~GF~T~evre~g~R~GF~iv~l~~g~~~~la~~~~~~~~~vGky~v~~~~f 81 (168)
T pfam03266 2 IFITGPPGVGKTTLVKKVIELLKSEGVKVGGFYTPEVREGGRRIGFDIVDLASGERGPLARVGGVSGPRVGKYVVNLEEF 81 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCEECCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCEECHHHH
T ss_conf 89978999889999999999998679707489930212589378999999047826774440688775457716668999
Q ss_pred HHH-HHHHHHHHHCCCCCEEEEECHHHC---CCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH--HHHHHCCCC
Q ss_conf 665-554456542046523775115664---80016789999972122111466506754330356754--333210245
Q 537021.9.peg.4 92 REI-IDQIYYKPISARFRVYIMDEVQML---STAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSR--CQRFDLHRI 165 (369)
Q Consensus 92 r~l-~~~~~~~p~~~~~kv~iid~a~~m---~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SR--cq~~~f~~l 165 (369)
-.+ .+-+... .....++||||.-.| +..-..++.+.|+- +..++..+--.....++..|+.| +..|.+.+-
T Consensus 82 e~~~~~~L~~a--~~~~dlivIDEIG~mEl~s~~F~~~v~~~l~~-~~~vl~ti~~~~~~~~v~~i~~~~d~~i~~vt~~ 158 (168)
T pfam03266 82 EEIALPALRRA--LEEADLIIIDEIGPMELKSPKFREAIEEVLSS-NKPVLAVVHRRSDSPLVERIRRRPDVKIFVVTEE 158 (168)
T ss_pred HHHHHHHHHHC--CCCCCEEEEECCCHHHHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCHHHHHHHCCCCCEEEEECHH
T ss_conf 99999999840--66898999976314533149999999999669-9979999972589838999741799389997868
Q ss_pred CCHHHH
Q ss_conf 400135
Q 537021.9.peg.4 166 SIGDLI 171 (369)
Q Consensus 166 ~~~~i~ 171 (369)
..+.+.
T Consensus 159 NRd~l~ 164 (168)
T pfam03266 159 NRDALP 164 (168)
T ss_pred HHHHHH
T ss_conf 866446
No 207
>PRK08181 transposase; Validated
Probab=97.41 E-value=0.00049 Score=49.88 Aligned_cols=104 Identities=14% Similarity=0.174 Sum_probs=61.7
Q ss_pred HHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 99982876706201078798888999999999614687778866587899977999977987782224533223345556
Q 537021.9.peg.4 13 NAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVR 92 (369)
Q Consensus 13 ~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir 92 (369)
++++++ +..+|.||+|+|||-+|-+++... |..+.. |....+. .=+++.+
T Consensus 101 ~fi~~~---~Nvil~Gp~GtGKThLA~Alg~~A-~~~G~~------------------------V~f~~~~--~L~~~L~ 150 (269)
T PRK08181 101 SWLAKG---ANLLLFGPPGGGKSHLAAAIGLAL-IENGWR------------------------VLFTRTT--DLVQKLQ 150 (269)
T ss_pred HHHHCC---CEEEEECCCCCCHHHHHHHHHHHH-HHCCCE------------------------EEEEEHH--HHHHHHH
T ss_conf 588648---708998999987889999999999-987993------------------------9997899--9999999
Q ss_pred HHH---HHHHHHHHCCCCCEEEEECHH--HCCCCHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 655---544565420465237751156--648001678999997212211146650675
Q 537021.9.peg.4 93 EII---DQIYYKPISARFRVYIMDEVQ--MLSTAAFNGLLKTLEEPPPHVKFIFATTEI 146 (369)
Q Consensus 93 ~l~---~~~~~~p~~~~~kv~iid~a~--~m~~~a~NaLLK~lEEPp~~~~fil~t~~~ 146 (369)
.-. ....+.-.-.++.+.||||.- .++...++-|...+++=-+..-.|++|+-|
T Consensus 151 ~a~~~~~~~~~~~~l~~~dLLIiDe~G~~~~~~~~~~~lf~lI~~Rye~~S~IITSn~~ 209 (269)
T PRK08181 151 VARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred HHHHCCCHHHHHHHHHCCCEEEEHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 97755839999999744460122010566799899999999999985788889988999
No 208
>KOG0736 consensus
Probab=97.33 E-value=0.00083 Score=48.19 Aligned_cols=126 Identities=21% Similarity=0.280 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHHC----------CCC-CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 848999999999982----------876-706201078798888999999999614687778866587899977999977
Q 537021.9.peg.4 3 GQKPMIKTLTNAFKS----------GRI-AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIR 71 (369)
Q Consensus 3 Gq~~~~~~l~~~~~~----------~~~-~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~ 71 (369)
|=+.+++.+...|+- |-- --..||+||||+|||.+|++.|-.. .-.... =+.+.-.-+.-
T Consensus 676 GLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc--sL~FlS-------VKGPELLNMYV 746 (953)
T KOG0736 676 GLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC--SLNFLS-------VKGPELLNMYV 746 (953)
T ss_pred CHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHC--EEEEEE-------ECCHHHHHHHH
T ss_conf 789999999987547543756651254313505887799985579999987543--036785-------05889988774
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHH-------------HHHHHHHHC---CC
Q ss_conf 98778222453322334555665554456542046523775115664800167-------------899999721---22
Q 537021.9.peg.4 72 GNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFN-------------GLLKTLEEP---PP 135 (369)
Q Consensus 72 ~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~N-------------aLLK~lEEP---p~ 135 (369)
|. +=+.+|++-++++- +..=|+++||.|.+-..--| -||--|.-- +.
T Consensus 747 Gq-------------SE~NVR~VFerAR~----A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s 809 (953)
T KOG0736 747 GQ-------------SEENVREVFERARS----AAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSS 809 (953)
T ss_pred CC-------------HHHHHHHHHHHHHC----CCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 30-------------18889999998544----69749983121232756788788654089999999998626667888
Q ss_pred CCCEEEEECC-CCCCCHHHH
Q ss_conf 1114665067-543303567
Q 537021.9.peg.4 136 HVKFIFATTE-IRKIPITVL 154 (369)
Q Consensus 136 ~~~fil~t~~-~~~ll~TI~ 154 (369)
.-+||+-+|| |+-|=|...
T Consensus 810 ~~VFViGATNRPDLLDpALL 829 (953)
T KOG0736 810 QDVFVIGATNRPDLLDPALL 829 (953)
T ss_pred CCEEEEECCCCCCCCCHHHC
T ss_conf 86599825888554576553
No 209
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=97.32 E-value=0.00059 Score=49.32 Aligned_cols=99 Identities=21% Similarity=0.273 Sum_probs=56.9
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC-CCCC-CCCCHHHHHHHHHHH
Q ss_conf 70620107879888899999999961468777886658789997799997798778222-4533-223345556655544
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVE-LDAA-SHTSIDDVREIIDQI 98 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e-~~~~-s~~~id~ir~l~~~~ 98 (369)
++..+|+||+|+|||-+|-+++..+ |..+.... --+-||+++ +..+ ...+ ..+++
T Consensus 47 ~~Nlll~G~~GtGKThLA~Ai~~~~-~~~g~~v~----------------f~~~~~L~~~l~~~~~~~~---~~~~l--- 103 (178)
T pfam01695 47 AENLLLLGPPGVGKTHLACALGHQA-CRAGYSVL----------------FTRTPDLVEQLKRARGDGR---LARTL--- 103 (178)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH-HHCCCEEE----------------EEECHHHHHHHHHHHHCCC---HHHHH---
T ss_conf 8768998999987899999999999-98698599----------------9961679999998752674---99999---
Q ss_pred HHHHHCCCCCEEEEECH--HHCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 56542046523775115--664800167899999721221114665067
Q 537021.9.peg.4 99 YYKPISARFRVYIMDEV--QMLSTAAFNGLLKTLEEPPPHVKFIFATTE 145 (369)
Q Consensus 99 ~~~p~~~~~kv~iid~a--~~m~~~a~NaLLK~lEEPp~~~~fil~t~~ 145 (369)
+ .-.+..+.||||. +.++..+++-|...+++=-++.-.|++|+.
T Consensus 104 --~-~~~~~dlLIiDDlG~~~~s~~~~~~lf~li~~Rye~~stIiTSN~ 149 (178)
T pfam01695 104 --Q-RLAKADLLILDDIGYLPLSQEAAHLLFELISDRYERRSTILTSNL 149 (178)
T ss_pred --H-HHHCCCEEEEEHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf --9-962589788720016568989999999999999756886877689
No 210
>KOG0735 consensus
Probab=97.29 E-value=0.0013 Score=46.74 Aligned_cols=164 Identities=21% Similarity=0.299 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHHC------------CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 848999999999982------------87670620107879888899999999961468777886658789997799997
Q 537021.9.peg.4 3 GQKPMIKTLTNAFKS------------GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAII 70 (369)
Q Consensus 3 Gq~~~~~~l~~~~~~------------~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~ 70 (369)
|-..+++.|...+.- =|++-..|++||||||||.+|-+.|...+-.--...+
T Consensus 671 g~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKG---------------- 734 (952)
T KOG0735 671 GLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKG---------------- 734 (952)
T ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCEEEEEECC----------------
T ss_conf 5899999999998554103678860886665545887799985788888888537805998258----------------
Q ss_pred CCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHC-----------CCCHHHHHHHHHHH--CCC
Q ss_conf 79877822--2453322334555665554456542046523775115664-----------80016789999972--122
Q 537021.9.peg.4 71 RGNHVDVV--ELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQML-----------STAAFNGLLKTLEE--PPP 135 (369)
Q Consensus 71 ~~~~~d~~--e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m-----------~~~a~NaLLK~lEE--Pp~ 135 (369)
|.++ +| |+ +=+.||++-+.++. ++.=|.++||.|.+ |-.--|-||--|.- --.
T Consensus 735 ----PElL~KyI-Ga---SEq~vR~lF~rA~~----a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~ 802 (952)
T KOG0735 735 ----PELLSKYI-GA---SEQNVRDLFERAQS----AKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLD 802 (952)
T ss_pred ----HHHHHHHH-CC---CHHHHHHHHHHHHC----CCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf ----89999874-50---07889999998651----49748971210243766687777742999999987603633445
Q ss_pred CCCEEEE-ECCCCCCCHHHHH--HHHHHHCCCCCCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
Q ss_conf 1114665-0675433035675--4333210245400----1356787643101345625664456531676
Q 537021.9.peg.4 136 HVKFIFA-TTEIRKIPITVLS--RCQRFDLHRISIG----DLIELFTKILQEESIEFDPEAVAMIARASDG 199 (369)
Q Consensus 136 ~~~fil~-t~~~~~ll~TI~S--Rcq~~~f~~l~~~----~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~G 199 (369)
+ ++|++ |+.|+-|=|.+.- |--+.-+-++|.+ +|.+.|.+ . -..-++-.++.+|...+|
T Consensus 803 G-V~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~---s-~~~~~~vdl~~~a~~T~g 868 (952)
T KOG0735 803 G-VYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSN---S-LLKDTDVDLECLAQKTDG 868 (952)
T ss_pred E-EEEEEECCCCCCCCHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHH---C-CCCCCCCCHHHHHHHCCC
T ss_conf 3-8999733783436776628876540156799892899999999853---4-577521016887652178
No 211
>KOG0727 consensus
Probab=97.28 E-value=0.0011 Score=47.28 Aligned_cols=124 Identities=22% Similarity=0.299 Sum_probs=64.3
Q ss_pred CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 67062010787988889999999996146877788665878999779999779877822245332233455566555445
Q 537021.9.peg.4 20 IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIY 99 (369)
Q Consensus 20 ~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~ 99 (369)
-|...|++||||||||.+|++.|..- ...+. .-.| ..-.++.. | . |---+|++. +
T Consensus 188 pprgvllygppg~gktml~kava~~t---~a~fi----rvvg-sefvqkyl-g----------e---gprmvrdvf---r 242 (408)
T KOG0727 188 PPRGVLLYGPPGTGKTMLAKAVANHT---TAAFI----RVVG-SEFVQKYL-G----------E---GPRMVRDVF---R 242 (408)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCC---CHHEE----EECC-HHHHHHHH-C----------C---CCHHHHHHH---H
T ss_conf 98622775799975789999986126---11144----6301-89999985-5----------4---838999999---9
Q ss_pred HHHHCCCCCEEEEECHHHCCC-----------CHHHHHHHHHH-----HCCCCCCEEEEECCCCCCCHHHHHHH---HHH
Q ss_conf 654204652377511566480-----------01678999997-----21221114665067543303567543---332
Q 537021.9.peg.4 100 YKPISARFRVYIMDEVQMLST-----------AAFNGLLKTLE-----EPPPHVKFIFATTEIRKIPITVLSRC---QRF 160 (369)
Q Consensus 100 ~~p~~~~~kv~iid~a~~m~~-----------~a~NaLLK~lE-----EPp~~~~fil~t~~~~~ll~TI~SRc---q~~ 160 (369)
+. -+.-.-|++|||.|...+ +-|--|+..|- .+..|+..|++|+..+-+=|.+.--- ..+
T Consensus 243 la-kenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrki 321 (408)
T KOG0727 243 LA-KENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKI 321 (408)
T ss_pred HH-HCCCCCEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCCC
T ss_conf 87-61698379862245676641244446318999999999975147676665589983275556687662876434443
Q ss_pred HCCCCCCHH
Q ss_conf 102454001
Q 537021.9.peg.4 161 DLHRISIGD 169 (369)
Q Consensus 161 ~f~~l~~~~ 169 (369)
.|+-+...+
T Consensus 322 efplpdrrq 330 (408)
T KOG0727 322 EFPLPDRRQ 330 (408)
T ss_pred CCCCCCHHH
T ss_conf 577985466
No 212
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.24 E-value=0.0021 Score=45.24 Aligned_cols=121 Identities=17% Similarity=0.153 Sum_probs=63.0
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 20107879888899999999961468777886658789997799997798778222453322334555665554456542
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPI 103 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~ 103 (369)
++..|+.|+||||+|..||+.+.|..-..+..- .-.+-.++..|.-++-- . .....+.+...+...-.
T Consensus 2 iiv~GvsGsGKSTia~~La~~lg~~~i~~D~~h-----~~~n~~km~~G~pL~d~-----d--r~~wl~~l~~~~~~~~~ 69 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDGDDLH-----PPANIAKMAAGIPLNDE-----D--RWPWLQALTDALLAKLA 69 (150)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECCCCCC-----CHHHHHHHHCCCCCCCC-----C--HHHHHHHHHHHHHHHHH
T ss_conf 899918999999999999997199564154335-----47689998679998852-----3--78999999999999998
Q ss_pred CCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4 104 SARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF 160 (369)
Q Consensus 104 ~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~ 160 (369)
.+++.|++ +|-.+.+.--+-|....++ .++.||++...++-+..=+..|--||
T Consensus 70 ~~g~~vVv--~cSaLk~~yR~~l~~~~~~--~~v~fi~L~~~~~~l~~Rl~~R~~hf 122 (150)
T cd02021 70 SAGEGVVV--ACSALKRIYRDILRGGAAN--PRVRFVHLDGPREVLAERLAARKGHF 122 (150)
T ss_pred HCCCCEEE--EEHHHHHHHHHHHHHHCCC--CCEEEEEEECCHHHHHHHHHHCCCCC
T ss_conf 44998799--8433239999999952768--98589998699999999998463579
No 213
>KOG0741 consensus
Probab=97.23 E-value=0.0012 Score=47.12 Aligned_cols=102 Identities=31% Similarity=0.531 Sum_probs=61.9
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 62010787988889999999996146877788665878999779999779877822245332233455566555445654
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKP 102 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p 102 (369)
+.||.||+|+|||++|--.|+.- +.|-+.-|.- .. .+-+ ....++..|+.+-++++.+|
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S-------~FPFvKiiSp----e~--------miG~--sEsaKc~~i~k~F~DAYkS~ 598 (744)
T KOG0741 540 SVLLEGPPGSGKTALAAKIALSS-------DFPFVKIISP----ED--------MIGL--SESAKCAHIKKIFEDAYKSP 598 (744)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC-------CCCEEEEECH----HH--------HCCC--CHHHHHHHHHHHHHHHHCCC
T ss_conf 89986699887688999997527-------9984797377----87--------0374--66788999999888763386
Q ss_pred HCCCCCEEEEECHHHC----------CCCHHHHHHHHHHHCCCC--CCEEEEECCCCCC
Q ss_conf 2046523775115664----------800167899999721221--1146650675433
Q 537021.9.peg.4 103 ISARFRVYIMDEVQML----------STAAFNGLLKTLEEPPPH--VKFIFATTEIRKI 149 (369)
Q Consensus 103 ~~~~~kv~iid~a~~m----------~~~a~NaLLK~lEEPp~~--~~fil~t~~~~~l 149 (369)
.. |+|+|+.+++ +.---.||+-.|-++|+. -+||++||+.--+
T Consensus 599 ls----iivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~v 653 (744)
T KOG0741 599 LS----IIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREV 653 (744)
T ss_pred CE----EEEECCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHH
T ss_conf 50----89981556562002468403579999999995248988845999962407999
No 214
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=97.22 E-value=0.0012 Score=46.98 Aligned_cols=112 Identities=20% Similarity=0.234 Sum_probs=66.5
Q ss_pred CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 67062010787988889999999996146877788665878999779999779877822245332233455566555445
Q 537021.9.peg.4 20 IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIY 99 (369)
Q Consensus 20 ~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~ 99 (369)
-|...|++||||+|||.+|+++|...+..--..++|-. .+.. . | -+=+..|++.+.+.
T Consensus 239 PPkG~ll~GPPGtGktllaka~ane~~a~f~~inGPei------------msky------~-G---e~e~~lr~if~eae 296 (980)
T TIGR01243 239 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFIAINGPEI------------MSKY------Y-G---ESEERLREIFKEAE 296 (980)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCHH------------HHHH------C-C---CCHHHHHHHHHHHH
T ss_conf 98735875589861789999987530551788506034------------4331------3-6---30789999998653
Q ss_pred HHHHCCCCCEEEEECHHHCCC-----------CHHHHHHHHHHH--CCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 654204652377511566480-----------016789999972--1221114665067543303567543
Q 537021.9.peg.4 100 YKPISARFRVYIMDEVQMLST-----------AAFNGLLKTLEE--PPPHVKFIFATTEIRKIPITVLSRC 157 (369)
Q Consensus 100 ~~p~~~~~kv~iid~a~~m~~-----------~a~NaLLK~lEE--Pp~~~~fil~t~~~~~ll~TI~SRc 157 (369)
+.-.-|++|||.|.+.. .--..||-.|.- --..++.|-+|+.|+.+=|++|--.
T Consensus 297 ----enaP~iifideidaiaPkr~e~~Geve~r~v~qlltlmdGlk~rG~v~viGatnrP~a~dPalrrPG 363 (980)
T TIGR01243 297 ----ENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGKVIVIGATNRPDALDPALRRPG 363 (980)
T ss_pred ----HCCCCEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHCCCC
T ss_conf ----0587078741211007641000016889999999999740024872899814688500262242788
No 215
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.18 E-value=0.0016 Score=46.02 Aligned_cols=121 Identities=16% Similarity=0.241 Sum_probs=67.1
Q ss_pred EEHHCCCCCCCHHHHHHHHH-HHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC---------CC---CHH
Q ss_conf 62010787988889999999-996146877788665878999779999779877822245332---------23---345
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIA-RSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAAS---------HT---SID 89 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A-~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s---------~~---~id 89 (369)
.+.|.||.|+||||+.=-+| +..+-+.......+ .|.+.|.|.. ++ -|.
T Consensus 225 vi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT------------------~DTYRIgAvEQLktYa~Il~iPv~vv~ 286 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYT------------------TDNYRIAAIEQLKRYADTMGMPFYPVK 286 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEE------------------CCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 99998999988899999999999997499279995------------------266537799999999998599459951
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHH-----HHHHHHH-HHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 5566555445654204652377511566480016-----7899999-721221114665067543303567543332102
Q 537021.9.peg.4 90 DVREIIDQIYYKPISARFRVYIMDEVQMLSTAAF-----NGLLKTL-EEPPPHVKFIFATTEIRKIPITVLSRCQRFDLH 163 (369)
Q Consensus 90 ~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~-----NaLLK~l-EEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f~ 163 (369)
+..++.+-+. +.++.+++||-|-+-.++.. ..|+... |.++-.++++|.+|.-.+-+..|..|-..+++.
T Consensus 287 ~~~el~~al~----~~~~DlILIDTAGrS~rd~~~~~eL~~ll~~~~~~~~ie~~LVLSaTtk~~dl~~ii~~f~~l~~~ 362 (432)
T PRK12724 287 DIKKFKETLA----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYR 362 (432)
T ss_pred CHHHHHHHHH----HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCC
T ss_conf 8999999998----569999999299989789999999999998636678851799997889989999999984269998
Q ss_pred CC
Q ss_conf 45
Q 537021.9.peg.4 164 RI 165 (369)
Q Consensus 164 ~l 165 (369)
.+
T Consensus 363 ~l 364 (432)
T PRK12724 363 RI 364 (432)
T ss_pred EE
T ss_conf 49
No 216
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.17 E-value=0.0023 Score=45.01 Aligned_cols=98 Identities=19% Similarity=0.233 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 89999999999828767062010787988889999999996146877788665878999779999779877822245332
Q 537021.9.peg.4 5 KPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAAS 84 (369)
Q Consensus 5 ~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s 84 (369)
..+...+...+..-.-+-.++|+||+|+|||-+|-++|..+. ..+.. ++.+
T Consensus 89 ~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKthLa~Ai~~~l~-~~g~s------------------------v~f~---- 139 (254)
T COG1484 89 KKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAGIS------------------------VLFI---- 139 (254)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHH-HCCCE------------------------EEEE----
T ss_conf 999999999998732588289989999879999999999999-83984------------------------9998----
Q ss_pred CCCHHHHHHHHHHHH-------HHHHCCCCCEEEEECHHH--CCCCHHHHHHHHHHH
Q ss_conf 233455566555445-------654204652377511566--480016789999972
Q 537021.9.peg.4 85 HTSIDDVREIIDQIY-------YKPISARFRVYIMDEVQM--LSTAAFNGLLKTLEE 132 (369)
Q Consensus 85 ~~~id~ir~l~~~~~-------~~p~~~~~kv~iid~a~~--m~~~a~NaLLK~lEE 132 (369)
+-.|-+++|..... +.-.-..+.|.||||.-. ++...++-+.-++..
T Consensus 140 -~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~ 195 (254)
T COG1484 140 -TAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEPFSQEEADLLFQLISR 195 (254)
T ss_pred -EHHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf -85999999999874552689999887528989982367766881558799999999
No 217
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=97.17 E-value=0.031 Score=36.62 Aligned_cols=89 Identities=17% Similarity=0.231 Sum_probs=51.5
Q ss_pred HHCCCCCEEEEECHHHC--C---CCHHHHHHHHHHHCCCCCCEEEEECCCC-----CCCHHHHHHHH-HHHCCCCCCHHH
Q ss_conf 42046523775115664--8---0016789999972122111466506754-----33035675433-321024540013
Q 537021.9.peg.4 102 PISARFRVYIMDEVQML--S---TAAFNGLLKTLEEPPPHVKFIFATTEIR-----KIPITVLSRCQ-RFDLHRISIGDL 170 (369)
Q Consensus 102 p~~~~~kv~iid~a~~m--~---~~a~NaLLK~lEEPp~~~~fil~t~~~~-----~ll~TI~SRcq-~~~f~~l~~~~i 170 (369)
...|+..+++||||.++ + ..-..-.|||+=. .|++.+|+|.+|+ .+.++|+.=|. ++.|+.+...+
T Consensus 638 ~ldG~p~ii~iDE~W~~l~~~~f~~~i~~~lkt~RK--~N~~vv~aTQs~~d~~~s~i~~~iieq~~T~I~LPN~~A~~- 714 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK--LNTFVIFATQSVEDASKSAISDTLVQQTATQIFLPNLKATD- 714 (800)
T ss_pred HCCCCCEEEEEECHHHHHCCHHHHHHHHHHHHHHHH--CCCEEEEEECCHHHHHCCCHHHHHHHHCCEEEECCCCCCHH-
T ss_conf 528982699960336663799999999999999987--39779998088999862846899998688579887811009-
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHCCCCC
Q ss_conf 567876431013456256644565316764
Q 537021.9.peg.4 171 IELFTKILQEESIEFDPEAVAMIARASDGS 200 (369)
Q Consensus 171 ~~~L~~i~~~E~i~~d~~~l~~ia~~s~Gs 200 (369)
.|. +++.+++.-.+.|.....++
T Consensus 715 -~y~------~~f~Lt~~E~~~i~~~~~~s 737 (800)
T PRK13898 715 -IYR------SVFMLSEREYILIKHTDPTT 737 (800)
T ss_pred -HHH------HHCCCCHHHHHHHHHCCCCC
T ss_conf -999------86599999999997179657
No 218
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=97.17 E-value=0.0029 Score=44.23 Aligned_cols=131 Identities=20% Similarity=0.318 Sum_probs=59.1
Q ss_pred HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH--HHH----HHHC--CCCC-CCC-
Q ss_conf 99999998287670620107879888899999999961468777886658789997--799----9977--9877-822-
Q 537021.9.peg.4 9 KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGE--HCQ----AIIR--GNHV-DVV- 78 (369)
Q Consensus 9 ~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~--~c~----~i~~--~~~~-d~~- 78 (369)
+.+..+|++|. ..+++|..|+||||=. -+.++ +.+. ...+.-.|-+=. +++ +|.. |... +.+
T Consensus 80 ~~i~~~i~~nq---Vvii~GeTGsGKTTQi---Pq~~l-e~g~-g~~~~I~~TQPRRiAA~svA~RVA~E~~~~lG~~VG 151 (1295)
T PRK11131 80 QDILEAIRDHQ---VVIVAGETGSGKTTQL---PKICL-ELGR-GIKGLIGHTQPRRLAARTVANRIAEELETELGGCVG 151 (1295)
T ss_pred HHHHHHHHHCC---EEEEECCCCCCHHHHH---HHHHH-HCCC-CCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 99999999799---6999768999878899---99999-6279-999989977965999999999999981999899888
Q ss_pred -CC---CCCC-CCCH----HHHHHHHHHHHHHHHCCCCCEEEEECHH--HCCCCHHHHHHHHHHHCCCCCCEEEE--ECC
Q ss_conf -24---5332-2334----5556655544565420465237751156--64800167899999721221114665--067
Q 537021.9.peg.4 79 -EL---DAAS-HTSI----DDVREIIDQIYYKPISARFRVYIMDEVQ--MLSTAAFNGLLKTLEEPPPHVKFIFA--TTE 145 (369)
Q Consensus 79 -e~---~~~s-~~~i----d~ir~l~~~~~~~p~~~~~kv~iid~a~--~m~~~a~NaLLK~lEEPp~~~~fil~--t~~ 145 (369)
-| +..| ++.| |-| |+..+..-|.-.+|-++|||||| .++.+--=.+||.+=.--+....|+. |-+
T Consensus 152 Y~VRf~~~~s~~t~i~~~TdGi--LL~e~~~d~~L~~y~~iIiDEaHERsl~~D~LLg~Lk~ll~~R~dLKvIimSATid 229 (1295)
T PRK11131 152 YKVRFNDQVSDNTMVKLMTDGI--LLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATID 229 (1295)
T ss_pred EEECCCCCCCCCCEEEEECCHH--HHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 8945698879997799976569--99986209987887779986855688019999999999983399988999558689
Q ss_pred CCCC
Q ss_conf 5433
Q 537021.9.peg.4 146 IRKI 149 (369)
Q Consensus 146 ~~~l 149 (369)
++++
T Consensus 230 ~e~f 233 (1295)
T PRK11131 230 PERF 233 (1295)
T ss_pred HHHH
T ss_conf 7999
No 219
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.17 E-value=0.0013 Score=46.66 Aligned_cols=44 Identities=20% Similarity=0.335 Sum_probs=25.1
Q ss_pred HCCCCCEEEEECHHHCCCCHHHHHHHHHHH-CCCCCCEEEEECCC
Q ss_conf 204652377511566480016789999972-12211146650675
Q 537021.9.peg.4 103 ISARFRVYIMDEVQMLSTAAFNGLLKTLEE-PPPHVKFIFATTEI 146 (369)
Q Consensus 103 ~~~~~kv~iid~a~~m~~~a~NaLLK~lEE-Pp~~~~fil~t~~~ 146 (369)
...++.++||||||.+....+...+..+-+ =+.+..+++.|..|
T Consensus 126 ~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 170 (201)
T smart00487 126 ELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATP 170 (201)
T ss_pred CCCCCEEEEEECHHHHHCCCCHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 525431999989677512570999999999679999789992489
No 220
>PRK13695 putative NTPase; Provisional
Probab=97.17 E-value=0.0005 Score=49.86 Aligned_cols=144 Identities=22% Similarity=0.192 Sum_probs=63.3
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCC-CCCCCCC--CCC--CHHHHHHHCCCCCCCCCCCCCCC-----CCH--
Q ss_conf 70620107879888899999999961468777-8866587--899--97799997798778222453322-----334--
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHI-DVPTVEF--EGF--GEHCQAIIRGNHVDVVELDAASH-----TSI-- 88 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~-~~~~~~~--c~~--c~~c~~i~~~~~~d~~e~~~~s~-----~~i-- 88 (369)
+.-.+++|+||+||||+.+-....|-+..... ...|.+- .|. .-.|..+..|...-+-..+..|. .+|
T Consensus 3 ~~kI~iTG~PGvGKTTli~Kv~~~L~~~g~~v~GF~T~Evre~G~R~GF~vv~l~~g~~~~lA~~~~~~~~~VgkY~V~~ 82 (174)
T PRK13695 3 ALRIGITGMPGVGKTTLVLKIAELLAREGYKVGGFITEEVREGGKRIGFKIIDLDTGEEGILARVGAVSRPRVGKYVVNL 82 (174)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCEEEEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEH
T ss_conf 42999878999889999999999986369617469952560388285059999058856876753788985545668716
Q ss_pred HHHHHH-HHHHHHHHHCCCCCEEEEECHHHC---CCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH-HHHHCC
Q ss_conf 555665-554456542046523775115664---800167899999721221114665067543303567543-332102
Q 537021.9.peg.4 89 DDVREI-IDQIYYKPISARFRVYIMDEVQML---STAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRC-QRFDLH 163 (369)
Q Consensus 89 d~ir~l-~~~~~~~p~~~~~kv~iid~a~~m---~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRc-q~~~f~ 163 (369)
+..-.+ ..-++.... .-.++||||.-.| +..-.++.++.|+-+. . .+.+-+ ..++..|++|= ..|.+.
T Consensus 83 ~~~e~~~~~~l~~a~~--~~dlivIDEIG~MEl~s~~F~~~V~~~L~s~k-p--vl~tih--~p~v~~ik~~~~~v~~vT 155 (174)
T PRK13695 83 EDLERIAIPAISRALR--EADLIIIDEIGPMELKSKKFVSAVEEVLKSEK-P--VIATVH--RPVVQRIRSLGGEVFWLT 155 (174)
T ss_pred HHHHHHHHHHHHHCCC--CCCEEEEECCCHHHHHHHHHHHHHHHHHCCCC-C--EEEEEC--HHHHHHHHCCCCEEEEEC
T ss_conf 8978998999983535--78799996310331104999999999973899-8--999977--588898633798999989
Q ss_pred CCCCHHHH
Q ss_conf 45400135
Q 537021.9.peg.4 164 RISIGDLI 171 (369)
Q Consensus 164 ~l~~~~i~ 171 (369)
+-..+.+.
T Consensus 156 ~~NRd~l~ 163 (174)
T PRK13695 156 PENRNILP 163 (174)
T ss_pred HHHHHHHH
T ss_conf 34677559
No 221
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.14 E-value=0.0022 Score=45.08 Aligned_cols=119 Identities=18% Similarity=0.298 Sum_probs=61.8
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH-------
Q ss_conf 7062010787988889999999996146877788665878999779999779877822245332233455566-------
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVRE------- 93 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~------- 93 (369)
-+..-|.||.|+||||+.=-+|..+.-+.......+ .|-+.|. .+||.|.
T Consensus 241 ~q~IALVGPTGVGKTTTIAKLAArf~~~~KkVALIT------------------tDTYRIG-----AVEQLKTYAeIMgV 297 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT------------------TDHSRIG-----TVQQLQDYVKTIGF 297 (436)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEE------------------CCCCHHH-----HHHHHHHHHHHHCC
T ss_conf 717999899998889999999999861698089998------------------0663476-----99999999998499
Q ss_pred ----------HHHHHHHHHHCCCCCEEEEECHHHCCC--CHHHHHHHHHHH-CCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf ----------555445654204652377511566480--016789999972-1221114665067543303567543332
Q 537021.9.peg.4 94 ----------IIDQIYYKPISARFRVYIMDEVQMLST--AAFNGLLKTLEE-PPPHVKFIFATTEIRKIPITVLSRCQRF 160 (369)
Q Consensus 94 ----------l~~~~~~~p~~~~~kv~iid~a~~m~~--~a~NaLLK~lEE-Pp~~~~fil~t~~~~~ll~TI~SRcq~~ 160 (369)
+..-+..-...+++.+++||-|-+--. ..-.-|...++. +|..+.++|.++.-.+-+.-|..|-..+
T Consensus 298 PV~VV~dp~eL~~AL~~lkdka~~DLILIDTAGRS~RD~~~I~EL~~~l~~~~p~ev~LVLSATTK~~DL~eIi~rF~~l 377 (436)
T PRK11889 298 EVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDI 377 (436)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCC
T ss_conf 43996888999999998763368888999298988468999999999985127771699997889989999999972579
Q ss_pred HC
Q ss_conf 10
Q 537021.9.peg.4 161 DL 162 (369)
Q Consensus 161 ~f 162 (369)
.+
T Consensus 378 ~i 379 (436)
T PRK11889 378 HI 379 (436)
T ss_pred CC
T ss_conf 98
No 222
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.14 E-value=0.0056 Score=42.09 Aligned_cols=115 Identities=18% Similarity=0.246 Sum_probs=53.8
Q ss_pred CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH-----HHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 767062010787988889999999996146877788665878999779-----999779877822245332233455566
Q 537021.9.peg.4 19 RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHC-----QAIIRGNHVDVVELDAASHTSIDDVRE 93 (369)
Q Consensus 19 ~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c-----~~i~~~~~~d~~e~~~~s~~~id~ir~ 93 (369)
.-|+-.+|.||.|+||||++=-+|..+.-.. ..+..-.|.+-+.. +.+...--.+++.. .+-.+
T Consensus 73 ~~~~vI~lvG~~G~GKTTT~AKLA~~~~~~~---~kV~lia~DtyR~aA~eQLk~~a~~l~v~~~~~--------~~~~~ 141 (270)
T PRK06731 73 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKK---KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV--------RDEAA 141 (270)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCC---CEEEEEEECCCCHHHHHHHHHHHHHHCCCEECC--------CCHHH
T ss_conf 9981899988898988999999999998679---908999838888889999999999819953545--------88789
Q ss_pred HHHHHHHHHHCCCCCEEEEECHHHCCCCH--HHHHHHHHHH-CCCCCCEEEEEC
Q ss_conf 55544565420465237751156648001--6789999972-122111466506
Q 537021.9.peg.4 94 IIDQIYYKPISARFRVYIMDEVQMLSTAA--FNGLLKTLEE-PPPHVKFIFATT 144 (369)
Q Consensus 94 l~~~~~~~p~~~~~kv~iid~a~~m~~~a--~NaLLK~lEE-Pp~~~~fil~t~ 144 (369)
+...+......+++-++|||-|-++..+. -+-|.+.+++ .|..++|++-++
T Consensus 142 ~~~~~~~~~~~~~~DvilIDTAGR~~~d~~lm~el~~~~~~~~p~~~~Lvldas 195 (270)
T PRK06731 142 MTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAS 195 (270)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf 999999999976999999979998714699999999986063898799998687
No 223
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=97.14 E-value=0.0047 Score=42.69 Aligned_cols=86 Identities=22% Similarity=0.368 Sum_probs=45.5
Q ss_pred HCCCCCEEEEECHHHC-CCCH-HH---HHHHHHHHCCCCCCEEEEECCCC-----CCCHHHHHHHH-HHHCCCCCCH--H
Q ss_conf 2046523775115664-8001-67---89999972122111466506754-----33035675433-3210245400--1
Q 537021.9.peg.4 103 ISARFRVYIMDEVQML-STAA-FN---GLLKTLEEPPPHVKFIFATTEIR-----KIPITVLSRCQ-RFDLHRISIG--D 169 (369)
Q Consensus 103 ~~~~~kv~iid~a~~m-~~~a-~N---aLLK~lEEPp~~~~fil~t~~~~-----~ll~TI~SRcq-~~~f~~l~~~--~ 169 (369)
..|+.-+++||||..+ .-.. +. -.|||+=. .|+..||+|.+|+ .|.+||+.-|. ++.|+.+... +
T Consensus 635 lDGrptli~iDEaW~~L~~~~F~~~i~~wLkT~RK--~N~~vv~aTQS~~di~~S~I~~aiie~c~T~IfLPNp~A~~~~ 712 (815)
T PRK13873 635 FDGRPTLLILDEGWLALDDPVFAAQLREWLKTLRK--KNASVIFATQSLADIDDSAIAPAIIESCPTRIFLPNERAIEPQ 712 (815)
T ss_pred HCCCCEEEEHHHHHHHHCCHHHHHHHHHHHHHHHH--CCCEEEEECCCHHHHHCCCHHHHHHHHCCEEEECCCCCCCCCH
T ss_conf 58996699758658772898999999999999987--0877999778889986496689999868856987782227700
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 356787643101345625664456531
Q 537021.9.peg.4 170 LIELFTKILQEESIEFDPEAVAMIARA 196 (369)
Q Consensus 170 i~~~L~~i~~~E~i~~d~~~l~~ia~~ 196 (369)
+..+- +++..++.-+++|++.
T Consensus 713 ~~~~Y------~~fGLn~rqieiIa~a 733 (815)
T PRK13873 713 IAAIY------RRFGLNDRQIEILARA 733 (815)
T ss_pred HHHHH------HHCCCCHHHHHHHHHC
T ss_conf 68999------8749999999999733
No 224
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=97.14 E-value=0.00024 Score=52.16 Aligned_cols=46 Identities=30% Similarity=0.426 Sum_probs=34.1
Q ss_pred HHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
Q ss_conf 010787988889999999996146877788665878999779999779877822245
Q 537021.9.peg.4 25 MLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELD 81 (369)
Q Consensus 25 lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~ 81 (369)
..+||||+||||.|+.+|+.|+...-..+ .-|.++...=.|+.|..
T Consensus 4 ~ISGpPGSGktTvA~~lA~~Lsl~~iSaG-----------~iRelA~~~Gldl~E~~ 49 (173)
T TIGR02173 4 TISGPPGSGKTTVAKILAEKLSLKLISAG-----------DIRELAEKMGLDLAESK 49 (173)
T ss_pred EEECCCCCCHHHHHHHHHHHCCCCEECCC-----------HHHHHHHHCCCCHHHHH
T ss_conf 87358968647899999986398312020-----------07889864298877734
No 225
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.08 E-value=0.01 Score=40.22 Aligned_cols=117 Identities=18% Similarity=0.280 Sum_probs=61.7
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHH-HCCCCC-CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHH------
Q ss_conf 706201078798888999999999-614687-778866587899977999977987782224533223345556------
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARS-LNYKTA-HIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVR------ 92 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~-l~c~~~-~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir------ 92 (369)
+..+.|.||.|+||||++=-+|.. .+-+.. .....+. |.+.|. .+||.|
T Consensus 210 ~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~------------------DtyRig-----A~eQLk~Ya~il 266 (412)
T PRK05703 210 GGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITL------------------DTYRIG-----AVEQLKTYAKIM 266 (412)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEE------------------CCCCHH-----HHHHHHHHHHHC
T ss_conf 736999888887567699999999999729981799983------------------767777-----999999999971
Q ss_pred -----------HHHHHHHHHHHCCCCCEEEEECHHHCCCCH-H-HHHHHHHHH-CCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf -----------655544565420465237751156648001-6-789999972-12211146650675433035675433
Q 537021.9.peg.4 93 -----------EIIDQIYYKPISARFRVYIMDEVQMLSTAA-F-NGLLKTLEE-PPPHVKFIFATTEIRKIPITVLSRCQ 158 (369)
Q Consensus 93 -----------~l~~~~~~~p~~~~~kv~iid~a~~m~~~a-~-NaLLK~lEE-Pp~~~~fil~t~~~~~ll~TI~SRcq 158 (369)
++.+-+ ..-.++.+++||-|-+=..+. . .-|..+++. ||..++.+|.++.-..-+..|.+|..
T Consensus 267 gvp~~v~~~~~~l~~al---~~~~~~dlILIDTaG~s~~d~~~~~eL~~~~~~~~~~~~~LVlsat~~~~dl~~i~~~f~ 343 (412)
T PRK05703 267 GIPVKVAYDPKELAKAL---EQLANCDLILIDTAGRSQRDPRLISELKALIENSKPIDVYLVLSATTKYRDLKDIVKHFS 343 (412)
T ss_pred CCEEEEECCHHHHHHHH---HHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC
T ss_conf 97379847999999999---871589979996898897899999999999862488718999759899899999999846
Q ss_pred HHHCC
Q ss_conf 32102
Q 537021.9.peg.4 159 RFDLH 163 (369)
Q Consensus 159 ~~~f~ 163 (369)
.+.+.
T Consensus 344 ~~~~~ 348 (412)
T PRK05703 344 RLPLD 348 (412)
T ss_pred CCCCC
T ss_conf 79998
No 226
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=97.07 E-value=0.0024 Score=44.85 Aligned_cols=143 Identities=17% Similarity=0.162 Sum_probs=64.2
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC----CCCCCCCHHHHHHHHHHHH
Q ss_conf 201078798888999999999614687778866587899977999977987782224----5332233455566555445
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL----DAASHTSIDDVREIIDQIY 99 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~----~~~s~~~id~ir~l~~~~~ 99 (369)
.++.|++|+||||+++.+|.... .+.... . ...--+-.|+.+.......+.+. -+.....++++ .....
T Consensus 3 i~i~G~aG~GKTtll~kl~~~wa--~g~~~~-~-~~~vf~~~~r~~~~~~~~sl~~ll~~~~~~~~~~~~~~---~~~~~ 75 (165)
T pfam05729 3 VILQGEAGSGKTTLLQKLALLWA--QGKLPQ-D-FDFVFFLPCRELSRSGEASLADLLFSQWPEPAAPVSEV---WAVIL 75 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH--CCCCCC-C-CCEEEEEEHHHHCCCCCCCHHHHHHHHCCCCCCCHHHH---HHHHH
T ss_conf 99982798989999999999998--698436-9-72899999567077766899999998767745763789---99998
Q ss_pred HHHHCCCCCEEEEECHHHCCCC--------HHHH-HHHHHHHC-CCCCCEEEEECCCCCC--CHHHHHHHHHHHCCCCCC
Q ss_conf 6542046523775115664800--------1678-99999721-2211146650675433--035675433321024540
Q 537021.9.peg.4 100 YKPISARFRVYIMDEVQMLSTA--------AFNG-LLKTLEEP-PPHVKFIFATTEIRKI--PITVLSRCQRFDLHRISI 167 (369)
Q Consensus 100 ~~p~~~~~kv~iid~a~~m~~~--------a~Na-LLK~lEEP-p~~~~fil~t~~~~~l--l~TI~SRcq~~~f~~l~~ 167 (369)
...+.=++|+|..|.+..+ .... |...+... -+++ .+++|+.|... ++-....-+++.....++
T Consensus 76 ---~~~~k~L~ilDGlDE~~~~~~~~~~~~~~~~~l~~ll~~~~lp~~-~vliTsRp~~~~~l~~~~~~~~~~ei~GFs~ 151 (165)
T pfam05729 76 ---ELPERVLLILDGLDELASDLGQLDGPLPVLTLLSSLLRKKLLPGA-SLLLTSRPDALRDLRRGLEEPRYLEVLGFSE 151 (165)
T ss_pred ---HCCCCEEEEECCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCC-EEEEEECCCHHHHHHHHCCCCCEEEECCCCH
T ss_conf ---397728999648455144435644457799999999841527886-4999968037988577648871899889999
Q ss_pred HHHHHHHHHH
Q ss_conf 0135678764
Q 537021.9.peg.4 168 GDLIELFTKI 177 (369)
Q Consensus 168 ~~i~~~L~~i 177 (369)
+++.+|+.+-
T Consensus 152 ~~~~~yi~~~ 161 (165)
T pfam05729 152 EDRKQYVRKY 161 (165)
T ss_pred HHHHHHHHHH
T ss_conf 9999999986
No 227
>KOG0732 consensus
Probab=97.06 E-value=0.0024 Score=44.81 Aligned_cols=132 Identities=18% Similarity=0.185 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHHC----------CC--CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 848999999999982----------87--670620107879888899999999961468777886658789997799997
Q 537021.9.peg.4 3 GQKPMIKTLTNAFKS----------GR--IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAII 70 (369)
Q Consensus 3 Gq~~~~~~l~~~~~~----------~~--~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~ 70 (369)
|=++++..|+..|-. -+ -|-..||+||||+|||..||++|.++ ...... ..+.
T Consensus 269 gl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~--s~~~~k-------------isff 333 (1080)
T KOG0732 269 GLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAAC--SRGNRK-------------ISFF 333 (1080)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHH--CCCCCC-------------CCHH
T ss_conf 5788899999988767640567641266898632302899872568888666540--541102-------------0244
Q ss_pred CCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC-----CCHH------HHHHHHHHHCC--C
Q ss_conf 79877822--24533223345556655544565420465237751156648-----0016------78999997212--2
Q 537021.9.peg.4 71 RGNHVDVV--ELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS-----TAAF------NGLLKTLEEPP--P 135 (369)
Q Consensus 71 ~~~~~d~~--e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~-----~~a~------NaLLK~lEEPp--~ 135 (369)
...+.|.. ++.-+ =.|.|.+-+.++.. .+-|+.+|+.|.+- ++.| -.||-.|--=+ +
T Consensus 334 mrkgaD~lskwvgEa----ERqlrllFeeA~k~----qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRg 405 (1080)
T KOG0732 334 MRKGADCLSKWVGEA----ERQLRLLFEEAQKT----QPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRG 405 (1080)
T ss_pred HHCCCHHHCCCCCCH----HHHHHHHHHHHHCC----CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 314844332544757----78899889887444----8517730555664656536677744567777887604777778
Q ss_pred CCCEEEEECCCCCCCHHHHHHH
Q ss_conf 1114665067543303567543
Q 537021.9.peg.4 136 HVKFIFATTEIRKIPITVLSRC 157 (369)
Q Consensus 136 ~~~fil~t~~~~~ll~TI~SRc 157 (369)
.|+.|-+|+.|+.+=|..|=+-
T Consensus 406 qVvvigATnRpda~dpaLRRPg 427 (1080)
T KOG0732 406 QVVVIGATNRPDAIDPALRRPG 427 (1080)
T ss_pred CEEEECCCCCCCCCCHHHCCCC
T ss_conf 6589715678332465442886
No 228
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.05 E-value=0.00041 Score=50.51 Aligned_cols=116 Identities=22% Similarity=0.295 Sum_probs=64.7
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHH-----HHH
Q ss_conf 706201078798888999999999614687778866587899977999977987782224533223345556-----655
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVR-----EII 95 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir-----~l~ 95 (369)
+.||+.-|+.|+||||+++.||+.|.|.--+.+. .-.-.+-.+|..|.-. -|+-| .|.
T Consensus 3 ~~a~VVmGVsGsGKSTvg~~LA~~L~~~fiegDd-----~Hp~~Ni~KM~~GiPL------------~D~DR~pWL~~l~ 65 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDD-----LHPAKNIDKMSQGIPL------------TDEDRLPWLERLN 65 (176)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCEECCCC-----CCCHHHHHHHHCCCCC------------CHHHHHHHHHHHH
T ss_conf 8579998289899899999999995987762344-----3789899998689998------------8667999999999
Q ss_pred HHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 54456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4 96 DQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF 160 (369)
Q Consensus 96 ~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~ 160 (369)
+.+. .-...+.-+++.-.| |.+. -+..|-.-.+++.|+.+.-+.+-|..-+..|--||
T Consensus 66 ~~~~-~~~~~~~~~VvaCSA--LK~~----YRd~Lr~~~~~v~fv~L~g~~~~i~~Rl~~R~gHF 123 (176)
T PRK09825 66 DASY-SLYKKNETGFIVCSS--LKKQ----YRDILRKSSPNVHFLWLDGDYETILARMQRRAGHF 123 (176)
T ss_pred HHHH-HHHHCCCCEEEEEHH--HHHH----HHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCCCC
T ss_conf 9999-999649982997188--6799----99999747998799997189999999997460379
No 229
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=97.04 E-value=0.0069 Score=41.45 Aligned_cols=129 Identities=18% Similarity=0.185 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHH-HHHHHHCCCCCCCC-CCCCCCCC--CCHHHHHHHCCCCCCC----
Q ss_conf 9999999999828767062010787988889999-99999614687778-86658789--9977999977987782----
Q 537021.9.peg.4 6 PMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTAR-IIARSLNYKTAHID-VPTVEFEG--FGEHCQAIIRGNHVDV---- 77 (369)
Q Consensus 6 ~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~-~~A~~l~c~~~~~~-~~~~~~c~--~c~~c~~i~~~~~~d~---- 77 (369)
.+...|.+++.++. ..++.||+|+||||..= .|... ..... ..|.+|-- -+.-.+++.....-.+
T Consensus 8 ~~~~~i~~~l~~~~---~~vl~a~tGsGKtTqvP~~ll~~----~~~~g~I~~~qPRR~AA~s~A~RvA~e~~e~~G~~V 80 (812)
T PRK11664 8 AVLPELLTALKTAP---QVLLKAPTGAGKSTWLPLQLLQQ----GGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred HHHHHHHHHHHHCC---EEEEEECCCCCHHHHHHHHHHHC----CCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 89999999999799---79999089999899999999964----688993899388399999999999997299999867
Q ss_pred -CCCCCCC----CCCHHHH--HHHHHHHHHHHHCCCCCEEEEECHHH--CCCCHHHHHHHHH-HHCCCCCCEEE
Q ss_conf -2245332----2334555--66555445654204652377511566--4800167899999-72122111466
Q 537021.9.peg.4 78 -VELDAAS----HTSIDDV--REIIDQIYYKPISARFRVYIMDEVQM--LSTAAFNGLLKTL-EEPPPHVKFIF 141 (369)
Q Consensus 78 -~e~~~~s----~~~id~i--r~l~~~~~~~p~~~~~kv~iid~a~~--m~~~a~NaLLK~l-EEPp~~~~fil 141 (369)
+.+...+ +++|.=+ --+...+..-|.-.+|-++||||+|- ++.+-.=+|++-+ ..--++...|+
T Consensus 81 GY~vR~e~~~s~~Tri~~~T~GiLlr~l~~dp~L~~~~~vI~DE~HER~l~~Dl~l~l~~~~~~~~r~dLklvv 154 (812)
T PRK11664 81 GYRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLI 154 (812)
T ss_pred EEEECCCCCCCCCCEEEEECHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 57825677889985799975589999972497767788899957546875189999999999986189828999
No 230
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.00 E-value=0.0063 Score=41.73 Aligned_cols=133 Identities=19% Similarity=0.249 Sum_probs=65.6
Q ss_pred CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCC-CCCCCCCCC------------CC
Q ss_conf 76706201078798888999999999614687778866587899977999977987-782224533------------22
Q 537021.9.peg.4 19 RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNH-VDVVELDAA------------SH 85 (369)
Q Consensus 19 ~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~-~d~~e~~~~------------s~ 85 (369)
+.++-...+||||+||||++.-+|..|--..- ..+|- -|..+..|.+ .-+.-+|-+ |.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~-------kvgGf--~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~ 73 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGY-------KVGGF--ITPEVREGGKRIGFKIVDLATGEEGILARVGFSR 73 (179)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC-------EEEEE--EEEEEECCCEEEEEEEEECCCCCEEEEEECCCCC
T ss_conf 75459998679984589999999999985596-------65139--8311420882751599981479557988847887
Q ss_pred C-----C--HHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC---CCCCEEEEECCCCCCCHHHHH
Q ss_conf 3-----3--45556655544565420465237751156648001678999997212---211146650675433035675
Q 537021.9.peg.4 86 T-----S--IDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP---PHVKFIFATTEIRKIPITVLS 155 (369)
Q Consensus 86 ~-----~--id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp---~~~~fil~t~~~~~ll~TI~S 155 (369)
. + +|..-++...+-.+..+. -.|+||||.-.| .-..+.+.+.+||-- ..+++.+--.+-+-++.-|++
T Consensus 74 ~rvGkY~V~v~~le~i~~~al~rA~~~-aDvIIIDEIGpM-Elks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik~ 151 (179)
T COG1618 74 PRVGKYGVNVEGLEEIAIPALRRALEE-ADVIIIDEIGPM-ELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRIKK 151 (179)
T ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHC-CCEEEEECCCCH-HHCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH
T ss_conf 621047862788899868999988634-998999433633-020088999999996589937999962567758998642
Q ss_pred HHHHHHC
Q ss_conf 4333210
Q 537021.9.peg.4 156 RCQRFDL 162 (369)
Q Consensus 156 Rcq~~~f 162 (369)
+--.+-|
T Consensus 152 ~~~v~v~ 158 (179)
T COG1618 152 LGGVYVF 158 (179)
T ss_pred CCCEEEE
T ss_conf 4877999
No 231
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.00 E-value=0.0076 Score=41.14 Aligned_cols=60 Identities=13% Similarity=0.138 Sum_probs=39.2
Q ss_pred CCCCEEEEECHHHCCCCH-HHHHHHHHHH--CCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 465237751156648001-6789999972--12211146650675433035675433321024
Q 537021.9.peg.4 105 ARFRVYIMDEVQMLSTAA-FNGLLKTLEE--PPPHVKFIFATTEIRKIPITVLSRCQRFDLHR 164 (369)
Q Consensus 105 ~~~kv~iid~a~~m~~~a-~NaLLK~lEE--Pp~~~~fil~t~~~~~ll~TI~SRcq~~~f~~ 164 (369)
.++.+++||-|-+=..+. ..-.++.|.+ +|-.++.+|.+|....-+.-|..|...+.+..
T Consensus 253 ~~~dlILIDTaGrs~rD~~~~e~l~~l~~~~~~~~~~LVLsat~~~~dl~~i~~~f~~~~~~~ 315 (404)
T PRK06995 253 RNKHIVLIDTVGMSQRDRMVSEQIAMLHGAGAPVQRLLLLNATSHGDTLNEVVQAYRGPGLAG 315 (404)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCE
T ss_conf 899999980999897688899999999735788528999779899999999999844699983
No 232
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.99 E-value=0.0027 Score=44.48 Aligned_cols=49 Identities=31% Similarity=0.510 Sum_probs=32.4
Q ss_pred HHHHHHHHHHCCCCCEEEEECHHH--CCCCHHHHHHHH-HHHCCCCCCEEEE
Q ss_conf 555445654204652377511566--480016789999-9721221114665
Q 537021.9.peg.4 94 IIDQIYYKPISARFRVYIMDEVQM--LSTAAFNGLLKT-LEEPPPHVKFIFA 142 (369)
Q Consensus 94 l~~~~~~~p~~~~~kv~iid~a~~--m~~~a~NaLLK~-lEEPp~~~~fil~ 142 (369)
|...+..-|.-.+|-++||||||- ++.+-.=+|||- +..-++....|+.
T Consensus 150 Llrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIim 201 (845)
T COG1643 150 LLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIM 201 (845)
T ss_pred HHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 9999843802045877997013355688899999999998646887059997
No 233
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.97 E-value=0.0054 Score=42.23 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHCC-CCCEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 9999999999828-7670620107879888899999999961
Q 537021.9.peg.4 6 PMIKTLTNAFKSG-RIAQSYMLSGTRGIGKTTTARIIARSLN 46 (369)
Q Consensus 6 ~~~~~l~~~~~~~-~~~ha~lf~G~~G~GK~~~a~~~A~~l~ 46 (369)
.+++..++.+.+= .-...++|+|++|+|||-+|-+.|++|.
T Consensus 167 ~i~~~~~~fi~~F~~~~~nLlf~G~~G~GKTfLa~~IA~ell 208 (330)
T PRK06835 167 NILEKCLNFIKNFDKNNENLLFYGNTGTGKTFLSNCIAKELL 208 (330)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999999999872478888669889999988999999999999
No 234
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.96 E-value=0.0016 Score=46.09 Aligned_cols=51 Identities=20% Similarity=0.173 Sum_probs=35.5
Q ss_pred CCCCEEEEECH-HHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 46523775115-664800167899999721221114665067543303567543
Q 537021.9.peg.4 105 ARFRVYIMDEV-QMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRC 157 (369)
Q Consensus 105 ~~~kv~iid~a-~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRc 157 (369)
-+.|++++||| ..|-++....|.-.+.+-=+.+.+|-+++.+. +++-.+|+
T Consensus 532 ~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~t--l~~~h~~~ 583 (604)
T COG4178 532 HKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPT--LWNFHSRQ 583 (604)
T ss_pred CCCCEEEEECCHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCHH--HHHHHHHH
T ss_conf 09998998060112595789999999985489978999556000--57887543
No 235
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.00095 Score=47.79 Aligned_cols=46 Identities=30% Similarity=0.512 Sum_probs=37.6
Q ss_pred CCCHHHHHHH----HHHHHHCCC---------CCEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 9284899999----999998287---------670620107879888899999999961
Q 537021.9.peg.4 1 MIGQKPMIKT----LTNAFKSGR---------IAQSYMLSGTRGIGKTTTARIIARSLN 46 (369)
Q Consensus 1 iiGq~~~~~~----l~~~~~~~~---------~~ha~lf~G~~G~GK~~~a~~~A~~l~ 46 (369)
||||+.+++. |+|-+++.+ .|...|.-||.|+|||-.||.+|+-.+
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~ 75 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAG 75 (444)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 40717778899999998999975478776225755358888888768899999999848
No 236
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.93 E-value=0.0039 Score=43.26 Aligned_cols=23 Identities=48% Similarity=0.645 Sum_probs=18.9
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 20107879888899999999961
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLN 46 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~ 46 (369)
.+|.||+|+||||+.--+|..+.
T Consensus 3 i~lvGptGvGKTTTiaKLA~~~~ 25 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989999988999999999999
No 237
>KOG0651 consensus
Probab=96.92 E-value=0.0044 Score=42.88 Aligned_cols=110 Identities=22% Similarity=0.295 Sum_probs=60.1
Q ss_pred CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 76706201078798888999999999614687778866587899977999977987782224533223345556655544
Q 537021.9.peg.4 19 RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQI 98 (369)
Q Consensus 19 ~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~ 98 (369)
+.|...++|||||+|||-+|++.|+.+-|.--.... ..+..++ + +. +---||+.-..+
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~s------------s~lv~ky------i-GE---saRlIRemf~yA 221 (388)
T KOG0651 164 KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVS------------SALVDKY------I-GE---SARLIRDMFRYA 221 (388)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEH------------HHHHHHH------C-CC---HHHHHHHHHHHH
T ss_conf 788256876799986459999999865985477447------------6663300------2-65---788999999778
Q ss_pred HHHHHCCCCCEEEEECHHHC-----CCCHHH------HHHHHHHH-----CCCCCCEEEEECCCCCCCHHHH
Q ss_conf 56542046523775115664-----800167------89999972-----1221114665067543303567
Q 537021.9.peg.4 99 YYKPISARFRVYIMDEVQML-----STAAFN------GLLKTLEE-----PPPHVKFIFATTEIRKIPITVL 154 (369)
Q Consensus 99 ~~~p~~~~~kv~iid~a~~m-----~~~a~N------aLLK~lEE-----Pp~~~~fil~t~~~~~ll~TI~ 154 (369)
+-. - .=|+.|||.|.. |+.+.| .|.-.+.+ --..|..|.+|+.|+-|=|++.
T Consensus 222 ~~~---~-pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLl 289 (388)
T KOG0651 222 REV---I-PCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALL 289 (388)
T ss_pred HHH---C-CEEEEEHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCEEEECCCCCCCCHHHC
T ss_conf 652---7-5577510123114577335552059999999999874214012066317985388665665542
No 238
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.87 E-value=0.012 Score=39.72 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999999828767062010787988889999999996
Q 537021.9.peg.4 6 PMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 6 ~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l 45 (369)
.+...|+.+|+.++ ..+++|+.|+||||++++++..+
T Consensus 148 ~~~~fL~~aV~~r~---NilI~G~TgSGKTTll~aL~~~i 184 (332)
T PRK13900 148 KIKEFLEHAVISKK---NIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred HHHHHHHHHHHCCC---CEEEECCCCCCHHHHHHHHHHCC
T ss_conf 79999999986487---19998888988999999998358
No 239
>pfam09848 DUF2075 Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.
Probab=96.82 E-value=0.0012 Score=46.93 Aligned_cols=106 Identities=24% Similarity=0.238 Sum_probs=51.5
Q ss_pred EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC--CCCCCC---HHHHHHHHH
Q ss_conf 062010787988889999999996146877788665878999779999779877822245--332233---455566555
Q 537021.9.peg.4 22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELD--AASHTS---IDDVREIID 96 (369)
Q Consensus 22 ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~--~~s~~~---id~ir~l~~ 96 (369)
+-++.+|-||+|||-+|.-+...|. ....... ..+..+|||=+..+- -+.+.+ ....+....
T Consensus 2 ~v~~V~G~pGtGKTvv~l~l~~~l~-~~~~~~~------------~~~l~~N~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 68 (348)
T pfam09848 2 AVFLVTGGPGTGKTVVALNLFAELS-DSDLGRT------------AVFLSGNHPLVLVLYEALAGDLKVRKKKLFRKPTS 68 (348)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH-HCCCCCC------------EEEEECCHHHHHHHHHHHHHHCCHHHCCCCCCCHH
T ss_conf 7999977799389999999999986-4402682------------08995786699999999860412001020007252
Q ss_pred HHH-HHHHCCCCCEEEEECHHHCCCC--------HHHHHHHHHHHCCCCCCEEE
Q ss_conf 445-6542046523775115664800--------16789999972122111466
Q 537021.9.peg.4 97 QIY-YKPISARFRVYIMDEVQMLSTA--------AFNGLLKTLEEPPPHVKFIF 141 (369)
Q Consensus 97 ~~~-~~p~~~~~kv~iid~a~~m~~~--------a~NaLLK~lEEPp~~~~fil 141 (369)
+++ .......+.|+|+||||+|... ..|-|..++.-- .-++|++
T Consensus 69 fi~~~~~~~~~~dvvivDEAhRl~~k~~~~~~~~~~~ql~~i~~~a-~v~V~~~ 121 (348)
T pfam09848 69 FINNLHKAPPHEDVVIVDEAHRLWTKSDLYFNFSGPNQLDEIMKRA-KVVVFFI 121 (348)
T ss_pred HHCCCCCCCCCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHC-CEEEEEE
T ss_conf 3165235798677899831786654336556778579999999752-8599998
No 240
>pfam05707 Zot Zonular occludens toxin (Zot). This family consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophages present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers
Probab=96.79 E-value=0.0017 Score=45.92 Aligned_cols=65 Identities=14% Similarity=0.150 Sum_probs=46.1
Q ss_pred CEEEEECHHHC-CCCHHH----HHHHHHHHCC-CCCCEEEEECCCCCCCHHHHHHHH-HHHCCCCCCHHHHH
Q ss_conf 23775115664-800167----8999997212-211146650675433035675433-32102454001356
Q 537021.9.peg.4 108 RVYIMDEVQML-STAAFN----GLLKTLEEPP-PHVKFIFATTEIRKIPITVLSRCQ-RFDLHRISIGDLIE 172 (369)
Q Consensus 108 kv~iid~a~~m-~~~a~N----aLLK~lEEPp-~~~~fil~t~~~~~ll~TI~SRcq-~~~f~~l~~~~i~~ 172 (369)
-++|||||++. +..+.+ ..+..+++-- -+.=|||+|.+|..|-..||.+|. ++++++.+.-.+..
T Consensus 72 ~liViDE~~~~~~~r~~~~~~~~~i~~l~~HRH~G~DiiliTQ~~~~id~~ir~lve~~~~~~r~~~~g~~~ 143 (183)
T pfam05707 72 ALLVIDEAQTWFPSRRGGDKVPPVLDAFSTHRHLGWDIILITQNPSKIDKQIRALVEHHVHCRRLTALGIKG 143 (183)
T ss_pred CEEEEECCHHHCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCEEEEEEECCCCCCCC
T ss_conf 799998976554887778888389999998077882089991897997299998614899999533468863
No 241
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.77 E-value=0.0087 Score=40.67 Aligned_cols=115 Identities=17% Similarity=0.290 Sum_probs=58.8
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHHH--CCCCCC--CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHH----
Q ss_conf 7062010787988889999999996--146877--78866587899977999977987782224533223345556----
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARSL--NYKTAH--IDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVR---- 92 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~l--~c~~~~--~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir---- 92 (369)
+.-+.|.||.|+||||+.--+|..+ +-.... ....+ .|.+.+. .+||.|
T Consensus 174 ~~vi~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit------------------~DtyRig-----AveQLktya~ 230 (388)
T PRK12723 174 KRIFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIIT------------------IDNYRIG-----AKKQIQTYGD 230 (388)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE------------------ECCCCHH-----HHHHHHHHHH
T ss_conf 6289998998875787999999999986267677379998------------------0787588-----9999999999
Q ss_pred -------------HHHHHHHHHHHCCCCCEEEEECHHHCCCCHH--HHHHHHHHHC-C-CCCCEEEEECCCCCCCHHHHH
Q ss_conf -------------6555445654204652377511566480016--7899999721-2-211146650675433035675
Q 537021.9.peg.4 93 -------------EIIDQIYYKPISARFRVYIMDEVQMLSTAAF--NGLLKTLEEP-P-PHVKFIFATTEIRKIPITVLS 155 (369)
Q Consensus 93 -------------~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~--NaLLK~lEEP-p-~~~~fil~t~~~~~ll~TI~S 155 (369)
++.+-+. ...++.+++||-|-+...+.. +-|-+.++.- | ..+.+++.++.-..-+..|..
T Consensus 231 il~vp~~v~~~~~dl~~~l~---~~~~~D~IlIDTAGrs~~d~~~~~el~~~~~~~~~~~~~~Lvlsat~~~~d~~~i~~ 307 (388)
T PRK12723 231 IMGIPVKAIESFKDLKEEIT---QSKDFDLVLIDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDIKEIFH 307 (388)
T ss_pred HHCCCEEEECCHHHHHHHHH---HHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 97880698578899999999---724999999958998856899999999999741898459999879899999999999
Q ss_pred HHHHHH
Q ss_conf 433321
Q 537021.9.peg.4 156 RCQRFD 161 (369)
Q Consensus 156 Rcq~~~ 161 (369)
|-..+.
T Consensus 308 ~f~~~~ 313 (388)
T PRK12723 308 QFSPFS 313 (388)
T ss_pred HHCCCC
T ss_conf 842799
No 242
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.77 E-value=0.0052 Score=42.31 Aligned_cols=141 Identities=21% Similarity=0.213 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 89999999999828767062010787988889999999996146877788665878999779999779877822245332
Q 537021.9.peg.4 5 KPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAAS 84 (369)
Q Consensus 5 ~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s 84 (369)
+++++..--++-.| -| .++.||||+||+.+||.++.++ +....+ -..+...+-|+ |+-
T Consensus 26 e~~i~l~lLaalag--eh-vlllGPPGtAKS~larrl~~~~-~~a~~F-------------eyLltRFstPe--ElF--- 83 (498)
T PRK13531 26 SHAIRLCLLAALSG--ES-VFLLGPPGIAKSLIARRLKFAF-QHARAF-------------EYLMTRFSTPE--EVF--- 83 (498)
T ss_pred HHHHHHHHHHHHCC--CC-EEEECCCCHHHHHHHHHHHHHH-CCCHHH-------------HHHHHCCCCHH--HHC---
T ss_conf 99999999999728--94-6988899513889999999985-574089-------------99987469888--853---
Q ss_pred CCCHHHHHHHHHH-HHHHHHCC---CCCEEEEECHHHCCCCHHHHHHHHHHHCC----------CCCCEEEEECC-CC--
Q ss_conf 2334555665554-45654204---65237751156648001678999997212----------21114665067-54--
Q 537021.9.peg.4 85 HTSIDDVREIIDQ-IYYKPISA---RFRVYIMDEVQMLSTAAFNGLLKTLEEPP----------PHVKFIFATTE-IR-- 147 (369)
Q Consensus 85 ~~~id~ir~l~~~-~~~~p~~~---~~kv~iid~a~~m~~~a~NaLLK~lEEPp----------~~~~fil~t~~-~~-- 147 (369)
|==+|+.+.+. -..+-++| .--|.++||.-+-|..--|+||-.|-|-- +-..+|-++++ |+
T Consensus 84 --GP~si~~Lk~~g~y~R~t~G~LP~A~iaFLDEIfKansAILNtLLtilNEr~f~nG~~~~~vPL~~li~ASNElP~~~ 161 (498)
T PRK13531 84 --GPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVAASNELPEAD 161 (498)
T ss_pred --CCCCHHHHHHCCEEEEECCCCCCCCEEEHHHHHHHCCHHHHHHHHHHHHHHEECCCCCEECCCHHHHHHCCCCCCCCC
T ss_conf --833299871178489722675886613157878614889999999986464034798313044688643046799998
Q ss_pred CCCHHHHHHHH-HHHCCCCCCHH
Q ss_conf 33035675433-32102454001
Q 537021.9.peg.4 148 KIPITVLSRCQ-RFDLHRISIGD 169 (369)
Q Consensus 148 ~ll~TI~SRcq-~~~f~~l~~~~ 169 (369)
.=+..+--|.. ++...++....
T Consensus 162 ~~L~AlyDRfL~R~~v~~v~~~~ 184 (498)
T PRK13531 162 SSLEALYDRMLIRLWLDKVQDKA 184 (498)
T ss_pred CCHHHHHHHHHHHEECCCCCCHH
T ss_conf 40788887644102231316766
No 243
>PRK03839 putative kinase; Provisional
Probab=96.75 E-value=0.004 Score=43.16 Aligned_cols=26 Identities=38% Similarity=0.754 Sum_probs=22.2
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 20107879888899999999961468
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKT 49 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~ 49 (369)
.+++|.||+||||+|+.||+.+.+..
T Consensus 3 I~ITGTPGtGKTTva~~La~~lg~~~ 28 (180)
T PRK03839 3 IAITGTPGVGKTTISKLLAEKLGYEY 28 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEE
T ss_conf 99978999998999999999769879
No 244
>KOG0922 consensus
Probab=96.72 E-value=0.0056 Score=42.11 Aligned_cols=133 Identities=25% Similarity=0.393 Sum_probs=61.3
Q ss_pred HHHHHHHHCCCCCEEEHHCCCCCCCHHHHH-HHHHHHHCCCCCCCCCCCCCCCC-CCHH-HHHHHC--CCCC--CC-CCC
Q ss_conf 999999982876706201078798888999-99999961468777886658789-9977-999977--9877--82-224
Q 537021.9.peg.4 9 KTLTNAFKSGRIAQSYMLSGTRGIGKTTTA-RIIARSLNYKTAHIDVPTVEFEG-FGEH-CQAIIR--GNHV--DV-VEL 80 (369)
Q Consensus 9 ~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a-~~~A~~l~c~~~~~~~~~~~~c~-~c~~-c~~i~~--~~~~--d~-~e~ 80 (369)
..|-.++++++ -.+..|+.|+||+|=. ..++.+-.+..+.. -|..|-- -|-+ .++++. |.-. +| +-|
T Consensus 57 ~~il~~ve~nq---vlIviGeTGsGKSTQipQyL~eaG~~~~g~I--~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~I 131 (674)
T KOG0922 57 DQILYAVEDNQ---VLIVIGETGSGKSTQIPQYLAEAGFASSGKI--ACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTI 131 (674)
T ss_pred HHHHHHHHHCC---EEEEECCCCCCCCCCHHHHHHHCCCCCCCCE--EEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 99999998787---7999848989853327699986265668827--750671677888999999985897676222699
Q ss_pred ---CCCC-CCCH----HHHHHHHHHHHHHHHCCCCCEEEEECHH--HCCCCHHHHHHHH-HHHCCCCCCEEE-EECCCCC
Q ss_conf ---5332-2334----5556655544565420465237751156--6480016789999-972122111466-5067543
Q 537021.9.peg.4 81 ---DAAS-HTSI----DDVREIIDQIYYKPISARFRVYIMDEVQ--MLSTAAFNGLLKT-LEEPPPHVKFIF-ATTEIRK 148 (369)
Q Consensus 81 ---~~~s-~~~i----d~ir~l~~~~~~~p~~~~~kv~iid~a~--~m~~~a~NaLLK~-lEEPp~~~~fil-~t~~~~~ 148 (369)
|..| .++| |- -|+..+-.-|.-.+|-|+|||||| .++++--=+|||- +.+.|+--++|. +|-+.++
T Consensus 132 RFed~ts~~TrikymTDG--~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimSATlda~k 209 (674)
T KOG0922 132 RFEDSTSKDTRIKYMTDG--MLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMSATLDAEK 209 (674)
T ss_pred EECCCCCCCEEEEEECCH--HHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECHHH
T ss_conf 845667873369996135--999988508764544489983223101578899999999873277836999923524899
No 245
>KOG0729 consensus
Probab=96.72 E-value=0.0038 Score=43.30 Aligned_cols=126 Identities=22% Similarity=0.306 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHH-----------CC-CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 84899999999998-----------28-7670620107879888899999999961468777886658789997799997
Q 537021.9.peg.4 3 GQKPMIKTLTNAFK-----------SG-RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAII 70 (369)
Q Consensus 3 Gq~~~~~~l~~~~~-----------~~-~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~ 70 (369)
|-..-++.|+.-++ -| .-|...|++||||+|||.+||+.|..- ++|=.---.....
T Consensus 181 GCKeqIEklREVVE~PlL~PErfv~LGIdPPKGvllyGPPGtGKTL~ARAVANRT------------dAcFIRViGSELV 248 (435)
T KOG0729 181 GCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT------------DACFIRVIGSELV 248 (435)
T ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCC------------CCEEEEEHHHHHH
T ss_conf 6699999999988432558888875278998733786899986108999874566------------7458763118999
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC-------CCHHHHHHHHHHH---------CC
Q ss_conf 7987782224533223345556655544565420465237751156648-------0016789999972---------12
Q 537021.9.peg.4 71 RGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS-------TAAFNGLLKTLEE---------PP 134 (369)
Q Consensus 71 ~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~-------~~a~NaLLK~lEE---------Pp 134 (369)
.. ++ + -|.--+|+|.+-+.-+ +-=|+++||.|..- ...-|-.-+||=| |-
T Consensus 249 QK------Yv-G---EGARMVRElFeMAr~K----KACiiFFDEiDAiGGaRFDDg~ggDNEVQRTMLEli~QLDGFDpR 314 (435)
T KOG0729 249 QK------YV-G---EGARMVRELFEMARTK----KACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR 314 (435)
T ss_pred HH------HH-H---HHHHHHHHHHHHHCCC----CEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 99------86-2---4689999999985236----527998410102267203578887279999999999860377888
Q ss_pred CCCCEEEEECCCCCCCHHHH
Q ss_conf 21114665067543303567
Q 537021.9.peg.4 135 PHVKFIFATTEIRKIPITVL 154 (369)
Q Consensus 135 ~~~~fil~t~~~~~ll~TI~ 154 (369)
.|....++|+.|+-|=|.+.
T Consensus 315 GNIKVlmATNRPdtLDpALl 334 (435)
T KOG0729 315 GNIKVLMATNRPDTLDPALL 334 (435)
T ss_pred CCEEEEEECCCCCCCCHHHC
T ss_conf 87589863489887687662
No 246
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=96.68 E-value=0.027 Score=37.10 Aligned_cols=58 Identities=21% Similarity=0.289 Sum_probs=31.8
Q ss_pred CCCCCEEEHHCCCCCCCHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 28767062010787988889999999996-14687778866587899977999977987782
Q 537021.9.peg.4 17 SGRIAQSYMLSGTRGIGKTTTARIIARSL-NYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV 77 (369)
Q Consensus 17 ~~~~~ha~lf~G~~G~GK~~~a~~~A~~l-~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~ 77 (369)
.+.++| -+..||.|.|||++--.++... -+..... -..+--..|....+...|.|-|+
T Consensus 453 ~~dvGH-tlIiGpTGsGKTvll~fl~aq~~ky~~~~v--f~FDKd~s~~i~~~a~GG~y~~l 511 (818)
T PRK13830 453 VDDVGH-TLIFGPTGSGKSTLLALIAAQFRRYAGAQI--FAFDKGRSMLPLTLAAGGDHYEI 511 (818)
T ss_pred CCCCCE-EEEECCCCCCHHHHHHHHHHHHHHCCCCEE--EEECCCCCHHHHHHHHCCEEEEE
T ss_conf 898650-589899999889999999999864279838--99748876899999809925873
No 247
>KOG1051 consensus
Probab=96.66 E-value=0.016 Score=38.64 Aligned_cols=167 Identities=19% Similarity=0.242 Sum_probs=95.2
Q ss_pred CCCH--HHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
Q ss_conf 9284--89999999999828767062010787988889999999996146877788665878999779999779877822
Q 537021.9.peg.4 1 MIGQ--KPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVV 78 (369)
Q Consensus 1 iiGq--~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~ 78 (369)
++|. +.+...+.-..+..+ .+ .++.|.+|+||+.++.-+|+.+ ..|--|+..
T Consensus 188 vigr~deeirRvi~iL~Rr~k-~N-PvLVG~~gvgktaiv~gla~ri------------------------~~G~vp~~l 241 (898)
T KOG1051 188 VIGRHDEEIRRVIEILSRKTK-NN-PVLVGEPGVGKTAIVEGLAQRI------------------------ATGDVPETL 241 (898)
T ss_pred CCCCCHHHHHHHHHHHHCCCC-CC-CEEEECCCCCCHHHHHHHHHHH------------------------HCCCCCCCC
T ss_conf 658852889999999814678-99-6698368777216899999876------------------------617888533
Q ss_pred C------------CCCCCCCC-H-HHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHH-------HHHHHHHHCCCCC
Q ss_conf 2------------45332233-4-555665554456542046523775115664800167-------8999997212211
Q 537021.9.peg.4 79 E------------LDAASHTS-I-DDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFN-------GLLKTLEEPPPHV 137 (369)
Q Consensus 79 e------------~~~~s~~~-i-d~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~N-------aLLK~lEEPp~~~ 137 (369)
. ++++...+ + +.++++.+.+.- .|+--|..|||.|.+..+..| .+||.+.--.. .
T Consensus 242 ~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~---~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~rg~-l 317 (898)
T KOG1051 242 KDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVES---GGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLARGG-L 317 (898)
T ss_pred CCCCEEEEEHHHCCCCCCCCHHHHHHHHHHHHHHHC---CCCCEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHCCC-E
T ss_conf 455248987000035864212788999999999854---798689983214322048874118999986588885597-4
Q ss_pred CEEEEECCCC--CC---CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHHCC
Q ss_conf 1466506754--33---0356754333210245400135678764310----13456256644565316
Q 537021.9.peg.4 138 KFIFATTEIR--KI---PITVLSRCQRFDLHRISIGDLIELFTKILQE----ESIEFDPEAVAMIARAS 197 (369)
Q Consensus 138 ~fil~t~~~~--~l---l~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~----E~i~~d~~~l~~ia~~s 197 (369)
-||-+||.-. +. =|++-.|-|.+.+.-++.++....|...... .|+.+.++++...+..+
T Consensus 318 ~~IGatT~e~Y~k~iekdPalErrw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s 386 (898)
T KOG1051 318 WCIGATTLETYRKCIEKDPALERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLS 386 (898)
T ss_pred EEEECCCHHHHHHHHHHCCCHHHCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
T ss_conf 897225099999987638205418551671357655314565554342011347712543342202101
No 248
>KOG0728 consensus
Probab=96.65 E-value=0.009 Score=40.59 Aligned_cols=128 Identities=20% Similarity=0.285 Sum_probs=67.9
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 70620107879888899999999961468777886658789997799997798778222453322334555665554456
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYY 100 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~ 100 (369)
|...|++||||+|||.+||+.|-.-.|.--..++ . .-.+++ |. -|---+|++.--+
T Consensus 181 PKGvlLygppgtGktLlaraVahht~c~firvsg-------s-elvqk~----------ig----egsrmvrelfvma-- 236 (404)
T KOG0728 181 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG-------S-ELVQKY----------IG----EGSRMVRELFVMA-- 236 (404)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCEEEEEECH-------H-HHHHHH----------HH----HHHHHHHHHHHHH--
T ss_conf 7604884699975629999987541407999644-------9-999998----------50----1389999999998--
Q ss_pred HHHCCCCCEEEEECHHHCC-----------CCHHHHHHHHHH-----HCCCCCCEEEEECCCCCCCHHHHHHH---HHHH
Q ss_conf 5420465237751156648-----------001678999997-----21221114665067543303567543---3321
Q 537021.9.peg.4 101 KPISARFRVYIMDEVQMLS-----------TAAFNGLLKTLE-----EPPPHVKFIFATTEIRKIPITVLSRC---QRFD 161 (369)
Q Consensus 101 ~p~~~~~kv~iid~a~~m~-----------~~a~NaLLK~lE-----EPp~~~~fil~t~~~~~ll~TI~SRc---q~~~ 161 (369)
-+--.-|+++||.|..- .+-|-..|-.|- |...+...|++|+..+-+=|.+.--- ..+.
T Consensus 237 --rehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkie 314 (404)
T KOG0728 237 --REHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIE 314 (404)
T ss_pred --HHCCCCEEEEHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCCCC
T ss_conf --750882675000012123434578986389999999999740240003662699841642224686638775455564
Q ss_pred CCCCCCHHHHHHH
Q ss_conf 0245400135678
Q 537021.9.peg.4 162 LHRISIGDLIELF 174 (369)
Q Consensus 162 f~~l~~~~i~~~L 174 (369)
|+|++.+.=.+.|
T Consensus 315 fp~p~e~ar~~il 327 (404)
T KOG0728 315 FPPPNEEARLDIL 327 (404)
T ss_pred CCCCCHHHHHHHH
T ss_conf 8998778887899
No 249
>KOG1803 consensus
Probab=96.65 E-value=0.0026 Score=44.52 Aligned_cols=44 Identities=36% Similarity=0.542 Sum_probs=36.9
Q ss_pred CCEEEEECH-HHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 523775115-6648001678999997212211146650675433035675433
Q 537021.9.peg.4 107 FRVYIMDEV-QMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQ 158 (369)
Q Consensus 107 ~kv~iid~a-~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq 158 (369)
+-++||||| ..|-.++|=++||. -.|||+ -+|-+|+|||.|+=-
T Consensus 359 fD~vIIDEaaQamE~~cWipvlk~-------kk~ILa-GDp~QLpP~v~S~~a 403 (649)
T KOG1803 359 FDLVIIDEAAQAMEPQCWIPVLKG-------KKFILA-GDPKQLPPTVLSDKA 403 (649)
T ss_pred CCEEEEEHHHHHCCCHHHHHHHCC-------CCEEEE-CCCCCCCCCCCCCHH
T ss_conf 888998125432350130677627-------736992-880017860024233
No 250
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.64 E-value=0.0073 Score=41.24 Aligned_cols=42 Identities=21% Similarity=0.311 Sum_probs=23.8
Q ss_pred CCCCCEEEEECHHHCCCCHHHH-HHHHHHHCCCCCCEEEEECC
Q ss_conf 0465237751156648001678-99999721221114665067
Q 537021.9.peg.4 104 SARFRVYIMDEVQMLSTAAFNG-LLKTLEEPPPHVKFIFATTE 145 (369)
Q Consensus 104 ~~~~kv~iid~a~~m~~~a~Na-LLK~lEEPp~~~~fil~t~~ 145 (369)
..+++++||||||.|..+..-. .+..+..-+++..+++.|.-
T Consensus 101 ~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 143 (144)
T cd00046 101 LKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSAT 143 (144)
T ss_pred CCCCCEEEEECHHHHHCCCCHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 5510099998888764379699999999967999948998289
No 251
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=96.63 E-value=0.0052 Score=42.32 Aligned_cols=46 Identities=28% Similarity=0.365 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHH------CCCCCEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 9284899999999998------287670620107879888899999999961
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFK------SGRIAQSYMLSGTRGIGKTTTARIIARSLN 46 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~------~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~ 46 (369)
+.||.-+.+.+.+++. +.+-|=.+-|.|++|+||+-+|+++|+.|.
T Consensus 27 lfGQhla~~~v~~al~~~l~~~~p~KpLVlSfHG~tGtGKn~vs~liA~~Ly 78 (127)
T pfam06309 27 LFGQHLVKQLVVRSVKGHWENPKPRKPLVLSFHGWTGTGKNFVAEIIADNLY 78 (127)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 3477989999999999997489999974887018999879899999999987
No 252
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=96.62 E-value=0.019 Score=38.18 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHH
Q ss_conf 489999999999828767062010787988889999999
Q 537021.9.peg.4 4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIA 42 (369)
Q Consensus 4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A 42 (369)
|..++..+.+ ++..+..+|.|+|||..+.+-+
T Consensus 4 Q~~~i~~~~~-------g~~~iv~~pTGsGKT~~~~~~~ 35 (167)
T pfam00270 4 QAEAIPAILE-------GKDVLVQAPTGSGKTLAFLLPA 35 (167)
T ss_pred HHHHHHHHHC-------CCCEEEECCCCCCHHHHHHHHH
T ss_conf 9999999976-------9978998899975899999999
No 253
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.61 E-value=0.011 Score=39.83 Aligned_cols=30 Identities=37% Similarity=0.607 Sum_probs=24.8
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 201078798888999999999614687778
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKTAHID 53 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~ 53 (369)
..|.|++|+||||+++++|+.|++.--+.+
T Consensus 2 I~LiG~~G~GKstigk~la~~l~~~fiD~D 31 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECC
T ss_conf 899889999889999999999798979685
No 254
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222 This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=96.61 E-value=0.011 Score=40.05 Aligned_cols=142 Identities=20% Similarity=0.304 Sum_probs=72.9
Q ss_pred HHHHHHHHCCCCCEEEHHCCCCCCCHHH-------------------------HHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 9999999828767062010787988889-------------------------999999996146877788665878999
Q 537021.9.peg.4 9 KTLTNAFKSGRIAQSYMLSGTRGIGKTT-------------------------TARIIARSLNYKTAHIDVPTVEFEGFG 63 (369)
Q Consensus 9 ~~l~~~~~~~~~~ha~lf~G~~G~GK~~-------------------------~a~~~A~~l~c~~~~~~~~~~~~c~~c 63 (369)
+-+.+||+.|. -.+++|..|+|||| +||-.|..+==+=+. |-|.|
T Consensus 75 edI~~AI~~nQ---VviiAGETGSGKTTQLPKICLELGrG~~GlIGHTQPRRlAAR~VA~R~AeELgt-------plGe~ 144 (1320)
T TIGR01967 75 EDIAKAIAENQ---VVIIAGETGSGKTTQLPKICLELGRGSRGLIGHTQPRRLAARSVAERVAEELGT-------PLGEL 144 (1320)
T ss_pred HHHHHHHHHCC---EEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-------CCCCC
T ss_conf 99999998489---899972448762023216777542787654124714688999999999998388-------98861
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCHHHHHH--HHHHHHHHHHCCCCCEEEEECHH--HCCCCHHHHHHHHHHHCCCCCCE
Q ss_conf 779999779877822245332233455566--55544565420465237751156--64800167899999721221114
Q 537021.9.peg.4 64 EHCQAIIRGNHVDVVELDAASHTSIDDVRE--IIDQIYYKPISARFRVYIMDEVQ--MLSTAAFNGLLKTLEEPPPHVKF 139 (369)
Q Consensus 64 ~~c~~i~~~~~~d~~e~~~~s~~~id~ir~--l~~~~~~~p~~~~~kv~iid~a~--~m~~~a~NaLLK~lEEPp~~~~f 139 (369)
=- + .=.|-|-+ .+++.|.=+=+ |+..++.==+-..|=-||||||| -||.+--=.+||.|=.=-+.-.+
T Consensus 145 VG---Y-kVRF~D~v----~~~t~VKLmTDGiLLAE~Q~DRfL~~YDTIIIDEAHERSLNIDFLLGYLK~lL~rRPDLKi 216 (1320)
T TIGR01967 145 VG---Y-KVRFEDQV----SSNTLVKLMTDGILLAETQQDRFLERYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKI 216 (1320)
T ss_pred CC---C-EEEECCCC----CCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCE
T ss_conf 32---0-36631426----8854363032235899852002221067336511231123388999888763266886525
Q ss_pred EEEE--CCCCC----------CCHHHHH---HHHHHHC--CCCCCH
Q ss_conf 6650--67543----------3035675---4333210--245400
Q 537021.9.peg.4 140 IFAT--TEIRK----------IPITVLS---RCQRFDL--HRISIG 168 (369)
Q Consensus 140 il~t--~~~~~----------ll~TI~S---Rcq~~~f--~~l~~~ 168 (369)
|.++ =++++ -+.+|.+ |+..+.. +||..+
T Consensus 217 IITSATID~ERFs~HFn~AeGkPaPIIEVSGRTyPVe~RYRPL~~~ 262 (1320)
T TIGR01967 217 IITSATIDPERFSRHFNNAEGKPAPIIEVSGRTYPVEVRYRPLVEE 262 (1320)
T ss_pred EEECCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCEEECCCCCC
T ss_conf 7400235744687862278889887555278546651111687644
No 255
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.60 E-value=0.028 Score=36.89 Aligned_cols=141 Identities=18% Similarity=0.134 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 89999999999828767062010787988889999999996146877788665878999779999779877822245332
Q 537021.9.peg.4 5 KPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAAS 84 (369)
Q Consensus 5 ~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s 84 (369)
+.....|+.+++.++ ..|++||.|+||||+.++++..+.-.... -+ ......+. -.||++..+....
T Consensus 12 ~~~~~~L~~~v~~~~---nIlIsG~tGSGKTTll~al~~~i~~~~ri---vt------iEd~~El~-l~~~~~v~l~~~~ 78 (186)
T cd01130 12 PLQAAYLWLAVEARK---NILISGGTGSGKTTLLNALLAFIPPDERI---IT------IEDTAELQ-LPHPNWVRLVTRP 78 (186)
T ss_pred HHHHHHHHHHHHCCC---CEEEECCCCCCHHHHHHHHHHHCCCCCCE---EE------ECCCHHHC-CCCCCEEEEEEEC
T ss_conf 999999999998599---89998999998999999999613345645---98------41535404-7777568888604
Q ss_pred -----CCCHHHHHHHHH-HHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf -----233455566555-44565420465237751156648001678999997212211146650675433035675433
Q 537021.9.peg.4 85 -----HTSIDDVREIID-QIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQ 158 (369)
Q Consensus 85 -----~~~id~ir~l~~-~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq 158 (369)
...+ ...++++ -+++. ...+++-|.-. .+|+ .+++.+.--... .++|-..+....+ .+|..
T Consensus 79 ~~~~~~~~~-~~~~li~~aLR~~-----pd~iivGEiR~--~Ea~-~~l~a~~tGh~g---~ltTiHa~s~~~a-i~Rl~ 145 (186)
T cd01130 79 GNVEGSGEV-TMADLLRSALRMR-----PDRIIVGEVRG--GEAL-DLLQAMNTGHPG---GMTTIHANSAEEA-LTRLE 145 (186)
T ss_pred CCCCCCCEE-CHHHHHHHHCCCC-----CCEEECCCCCC--HHHH-HHHHHHHCCCCC---CCCCCCCCCHHHH-HHHHH
T ss_conf 645786503-4999988736689-----97373175683--9999-999999748986---0303158999999-99999
Q ss_pred H-HHCCCCCCHHHH
Q ss_conf 3-210245400135
Q 537021.9.peg.4 159 R-FDLHRISIGDLI 171 (369)
Q Consensus 159 ~-~~f~~l~~~~i~ 171 (369)
. ....+.+.+.+.
T Consensus 146 ~l~~~~~~~~~~~~ 159 (186)
T cd01130 146 LLPSNVPLGRPLLR 159 (186)
T ss_pred HHHHCCCCCHHHHH
T ss_conf 88754799999999
No 256
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.59 E-value=0.0034 Score=43.72 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=22.4
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 620107879888899999999961
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSLN 46 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l~ 46 (369)
.+||+||+|+|||-+|-++|.+|.
T Consensus 98 gLlF~G~~GTGKThLA~aIan~Li 121 (242)
T PRK07952 98 SFIFSGKPGTGKNHLAAAICNELL 121 (242)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 179978999978999999999999
No 257
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.57 E-value=0.062 Score=34.37 Aligned_cols=135 Identities=12% Similarity=0.175 Sum_probs=73.5
Q ss_pred HHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCC-----CCCCCCC-----
Q ss_conf 999998287670620107879888899999999961468777886658789997799997798-----7782224-----
Q 537021.9.peg.4 11 LTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGN-----HVDVVEL----- 80 (369)
Q Consensus 11 l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~-----~~d~~e~----- 80 (369)
+.+.+...+.|=-.|+.|..|+||+|+|-.+|..|+-..-- ..++-|.+..+. .|.++.=
T Consensus 82 ~~r~~r~~~~pliILigGtsGvGKSTlA~~LA~rLgI~~vi----------sTD~IREVmR~~~~~el~P~Lh~SSy~Aw 151 (306)
T PRK04220 82 LWRRIRKSKEPIIILIGGASGVGTSTIAFELASRLGIRSVI----------GTDSIREVMRKIISKELLPTLHESSYTAW 151 (306)
T ss_pred HHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEE----------CCHHHHHHHHHCCCCCCCCHHHCCCHHHH
T ss_conf 99998536998799985899887899999999970988342----------22169999985248301751322751310
Q ss_pred -----CCCCCC----C-HHHHHHH---HHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf -----533223----3-4555665---55445654204652377511566480016789999972122111466506754
Q 537021.9.peg.4 81 -----DAASHT----S-IDDVREI---IDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIR 147 (369)
Q Consensus 81 -----~~~s~~----~-id~ir~l---~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~ 147 (369)
+..+.. | .+|...+ ++.+--+.. -..+=+||+.+|-.. . -+.+..-+.|.-+.|+++-.+.+
T Consensus 152 k~l~~~~~~~~~~I~Gf~~Q~~~V~~gI~aiI~Ra~-~eg~slIIEGVHlvP-~---~i~~~~~~~~~vi~fll~i~dEe 226 (306)
T PRK04220 152 KSLRRPPWEEPDHILGFERHVEPVLVGVEAVIERAL-KEGISVIIEGVHIVP-G---FIKEKYLNMPNVFMFVLTLSDEE 226 (306)
T ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCEEEEEECCCH-H---HHHHHHHCCCCEEEEEEEECCHH
T ss_conf 023678778657999999999999999999999999-729968998430377-8---87777643883899999978889
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 3303567543332
Q 537021.9.peg.4 148 KIPITVLSRCQRF 160 (369)
Q Consensus 148 ~ll~TI~SRcq~~ 160 (369)
.-..-..+|+..-
T Consensus 227 ~H~~RF~~Ra~~~ 239 (306)
T PRK04220 227 THKARFYARARVS 239 (306)
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999999850447
No 258
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=96.56 E-value=0.013 Score=39.33 Aligned_cols=134 Identities=18% Similarity=0.284 Sum_probs=74.0
Q ss_pred HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHH---HC-----CCCC-CCCCCCCCCCC-CCHHHHHHHCCCCCCCC
Q ss_conf 999999982876706201078798888999999999---61-----4687-77886658789-99779999779877822
Q 537021.9.peg.4 9 KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARS---LN-----YKTA-HIDVPTVEFEG-FGEHCQAIIRGNHVDVV 78 (369)
Q Consensus 9 ~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~---l~-----c~~~-~~~~~~~~~c~-~c~~c~~i~~~~~~d~~ 78 (369)
+.|..+ .++| -.+++|=||+||||+.|+.+.. +- ..+. ..+.++ ..|. +.+..|++.+-+
T Consensus 357 ~AL~~~-~~~K---v~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd~~v-~LaAPTGrAAkRl~E~T----- 426 (769)
T TIGR01448 357 EALKTA-IQDK---VVILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDDLPV-VLAAPTGRAAKRLAEVT----- 426 (769)
T ss_pred HHHHHH-HCCC---EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE-EEECCCHHHHHHCCCCC-----
T ss_conf 999998-6094---8998577888616899999999987168775531245677648-87377437888511002-----
Q ss_pred CCCCCCCCCHHHHHHHHHHHH----HH---HHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCH
Q ss_conf 245332233455566555445----65---42046523775115664800167899999721221114665067543303
Q 537021.9.peg.4 79 ELDAASHTSIDDVREIIDQIY----YK---PISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPI 151 (369)
Q Consensus 79 e~~~~s~~~id~ir~l~~~~~----~~---p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~ 151 (369)
|.. --.|..++.+=. .. --.-++..+||||.-||-.-=++.||-.+ |+++..||+... ++|
T Consensus 427 ---G~~---a~TIHRLlG~~~~~~~~~k~~~~~~~~DL~IvDE~SM~Dt~L~~~lL~a~---P~~a~lllVGD~-DQL-- 494 (769)
T TIGR01448 427 ---GLE---ALTIHRLLGYGSDTKSENKNLEDPIDADLLIVDESSMVDTWLASSLLAAV---PDHARLLLVGDA-DQL-- 494 (769)
T ss_pred ---CCH---HHHHHHHHCCCCCCCCCCHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHC---CCCCEEEEECCC-CCC--
T ss_conf ---621---23477863689888732110113478776998146218899999998617---977779888376-888--
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 567543332102454001356787
Q 537021.9.peg.4 152 TVLSRCQRFDLHRISIGDLIELFT 175 (369)
Q Consensus 152 TI~SRcq~~~f~~l~~~~i~~~L~ 175 (369)
+++.+-.+.+-|-
T Consensus 495 -----------PSV~pG~VL~DLi 507 (769)
T TIGR01448 495 -----------PSVGPGQVLKDLI 507 (769)
T ss_pred -----------CCCCCCHHHHHHH
T ss_conf -----------9886440899998
No 259
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=96.55 E-value=0.0097 Score=40.32 Aligned_cols=93 Identities=26% Similarity=0.254 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 48999999999982876706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4 4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA 83 (369)
Q Consensus 4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~ 83 (369)
|+.+++.+ .++++ .++..|.|+|||.++..+++.+.- ... .++.+-+
T Consensus 8 Q~~a~~~~---~~~~~----~~i~~pTGsGKT~~~~~~i~~~~~-~~~------------------------~~lvlvp- 54 (103)
T pfam04851 8 QIEAIRNL---LEKKR----GLIVMATGSGKTLTAAKLIARLLK-GKK------------------------KVLFLVP- 54 (103)
T ss_pred HHHHHHHH---HHCCC----EEEEECCCCCHHHHHHHHHHHHHH-CCC------------------------CEEEEEC-
T ss_conf 99999999---96398----699958999879999999999984-699------------------------2999908-
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 2233455566555445654204652377511566480016789999972122111466506
Q 537021.9.peg.4 84 SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATT 144 (369)
Q Consensus 84 s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~ 144 (369)
++.=++|.++ ++ ++|+||||....+. ..-+.++..++..++=|++|
T Consensus 55 ~~~L~~Q~~~---~~----------lii~DE~H~~~a~~--~~~~l~~~~~~~~~lGlTAT 100 (103)
T pfam04851 55 RKDLLEQALE---EF----------VIIIDEAHHSSAKT--KYRKILEYFKPAFLLGLTAT 100 (103)
T ss_pred CHHHHHHHHH---HH----------HHHHHHHHHCCCHH--HHHHHHHHCCCCEEEEEEEC
T ss_conf 2999999999---65----------64601635235378--99999995772608998008
No 260
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.53 E-value=0.012 Score=39.65 Aligned_cols=33 Identities=15% Similarity=0.356 Sum_probs=23.7
Q ss_pred HHHHHHCCCCC--EEEHHCCCCCCCHHHHHHHHHHH
Q ss_conf 99999828767--06201078798888999999999
Q 537021.9.peg.4 11 LTNAFKSGRIA--QSYMLSGTRGIGKTTTARIIARS 44 (369)
Q Consensus 11 l~~~~~~~~~~--ha~lf~G~~G~GK~~~a~~~A~~ 44 (369)
|-+.+ .|-+| +.+|++|++|+|||++|.-|+..
T Consensus 21 lD~~l-~GG~p~g~~~li~G~~G~GKt~~~~~f~~~ 55 (241)
T PRK06067 21 IDRKL-GGGIPFGSLILIEGENDTGKSVLSQQFVWG 55 (241)
T ss_pred HHHHC-CCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 78650-699779908999807998879999999999
No 261
>PRK13948 shikimate kinase; Provisional
Probab=96.52 E-value=0.013 Score=39.34 Aligned_cols=35 Identities=29% Similarity=0.352 Sum_probs=27.3
Q ss_pred CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 76706201078798888999999999614687778
Q 537021.9.peg.4 19 RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHID 53 (369)
Q Consensus 19 ~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~ 53 (369)
|.+--..|.|++|+||||+++.+|+.|+..--+.+
T Consensus 8 ~~~~~IvLIG~mGsGKStiGk~LA~~l~~~fiD~D 42 (182)
T PRK13948 8 RPATFVALAGFMGTGKSRIGWELSRALALHFVDTD 42 (182)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECH
T ss_conf 99981898899999889999999999695988884
No 262
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.48 E-value=0.0036 Score=43.52 Aligned_cols=26 Identities=38% Similarity=0.523 Sum_probs=22.7
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 62010787988889999999996146
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSLNYK 48 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l~c~ 48 (369)
-.+|+|+||+||||+|+.+|+.|--.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 69982699988017899999999972
No 263
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.47 E-value=0.0066 Score=41.57 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=18.4
Q ss_pred EEEHHCCCCCCCHHHHHHHHHH
Q ss_conf 0620107879888899999999
Q 537021.9.peg.4 22 QSYMLSGTRGIGKTTTARIIAR 43 (369)
Q Consensus 22 ha~lf~G~~G~GK~~~a~~~A~ 43 (369)
.-+.++||+|+|||+++.-+|.
T Consensus 20 ~itEi~G~~GsGKTql~lqla~ 41 (235)
T cd01123 20 SITEIFGEFGSGKTQLCHQLAV 41 (235)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999999999849999999999
No 264
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=96.45 E-value=0.038 Score=35.94 Aligned_cols=181 Identities=13% Similarity=0.181 Sum_probs=90.1
Q ss_pred CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHHC---CCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 67062010787988889999999996146877788665-87899977999977---987782224533223345556655
Q 537021.9.peg.4 20 IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV-EFEGFGEHCQAIIR---GNHVDVVELDAASHTSIDDVREII 95 (369)
Q Consensus 20 ~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~-~~c~~c~~c~~i~~---~~~~d~~e~~~~s~~~id~ir~l~ 95 (369)
+-..+|+.|..|+||-.+|+++-.+ ++...+|-. --|..-+.- ...+ |.-|- ..++.|+
T Consensus 226 lDAPLLI~GeTGTGKdLlAkaCH~~----S~R~~~pFlalNCA~lPe~-~aEsElFG~apg-----~~gk~Gf------- 288 (511)
T COG3283 226 LDAPLLITGETGTGKDLLAKACHLA----SPRHSKPFLALNCASLPED-AAESELFGHAPG-----DEGKKGF------- 288 (511)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHC----CCCCCCCEEEEECCCCCHH-HHHHHHHCCCCC-----CCCCCCH-------
T ss_conf 3787687448886188999987443----8455897367644779666-767777356888-----7776346-------
Q ss_pred HHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHH-----------CCCCCCEEEEECCCC--C------CCHHHHHH
Q ss_conf 5445654204652377511566480016789999972-----------122111466506754--3------30356754
Q 537021.9.peg.4 96 DQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEE-----------PPPHVKFIFATTEIR--K------IPITVLSR 156 (369)
Q Consensus 96 ~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEE-----------Pp~~~~fil~t~~~~--~------ll~TI~SR 156 (369)
+-+ ..| --+++|+.-.|+..-|-.||++|-. -..+ +=++|+|+.+ . .-.-.--|
T Consensus 289 --fE~--Ang--GTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vd-VRVIcatq~nL~~lv~~g~fReDLfyR 361 (511)
T COG3283 289 --FEQ--ANG--GTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVD-VRVICATQVNLVELVQKGKFREDLFYR 361 (511)
T ss_pred --HHH--CCC--CEEEEEHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEE-EEEEECCCCCHHHHHHCCCHHHHHHHH
T ss_conf --340--269--7488500332499899999998627760003775457877-899961666699998637258878877
Q ss_pred HHHH--HCCCCCC--HHH----HHHHHHHHHHCCC---CCCHHHHHHHHH-CCCCCCCHHHHCCCCCCCHHHCC-CCHHH
Q ss_conf 3332--1024540--013----5678764310134---562566445653-16764200110001110000001-21032
Q 537021.9.peg.4 157 CQRF--DLHRISI--GDL----IELFTKILQEESI---EFDPEAVAMIAR-ASDGSARDGLSLLDQAIARCNDK-IVTSS 223 (369)
Q Consensus 157 cq~~--~f~~l~~--~~i----~~~L~~i~~~E~i---~~d~~~l~~ia~-~s~GslR~Al~lLeq~i~~~~~~-i~~e~ 223 (369)
--++ +++|+.. ++| .-++.+++.+-|+ +.+++.+..+.+ ...|++|.-.|.+=++.+.+++. +..++
T Consensus 362 LNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~Eg~~l~i~~ 441 (511)
T COG3283 362 LNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTLLEGYELRIED 441 (511)
T ss_pred HHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 50134238850006521068999999999997589987668789999987799960999999999999985167444320
Q ss_pred H
Q ss_conf 2
Q 537021.9.peg.4 224 V 224 (369)
Q Consensus 224 v 224 (369)
+
T Consensus 442 i 442 (511)
T COG3283 442 I 442 (511)
T ss_pred C
T ss_conf 0
No 265
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.44 E-value=0.019 Score=38.14 Aligned_cols=52 Identities=25% Similarity=0.478 Sum_probs=33.6
Q ss_pred CCCCEEEEECH-HHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 46523775115-6648001678999997212211146650675433035675433321
Q 537021.9.peg.4 105 ARFRVYIMDEV-QMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFD 161 (369)
Q Consensus 105 ~~~kv~iid~a-~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~ 161 (369)
.+.+|+|+||+ -.|-..+...+.+++++-..++..|++|+.++. +. .|.++-
T Consensus 155 ~~p~IllLDEpTs~LD~~te~~i~~~l~~~~~~~TvI~itHrl~~----~~-~~DrIl 207 (275)
T cd03289 155 SKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEA----ML-ECQRFL 207 (275)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHH----HH-HCCEEE
T ss_conf 199989997976689999999999999997299989999438888----98-699999
No 266
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.41 E-value=0.012 Score=39.71 Aligned_cols=13 Identities=23% Similarity=0.204 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8999999999995
Q 537021.9.peg.4 334 PMEAVEMVLIRLA 346 (369)
Q Consensus 334 p~L~lE~lLlkL~ 346 (369)
+|+++=.++++=.
T Consensus 486 QRialARall~~~ 498 (581)
T PRK11176 486 QRIAIARALLRDS 498 (581)
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999996799
No 267
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.40 E-value=0.0062 Score=41.75 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=21.6
Q ss_pred EEEHHCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 06201078798888999999999614687
Q 537021.9.peg.4 22 QSYMLSGTRGIGKTTTARIIARSLNYKTA 50 (369)
Q Consensus 22 ha~lf~G~~G~GK~~~a~~~A~~l~c~~~ 50 (369)
.-+-+.||.|+||||+.+.+...+.+..+
T Consensus 31 ~~v~ivG~sGsGKSTLl~ll~gl~~p~~G 59 (220)
T cd03245 31 EKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59 (220)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 99999999998599999999672547865
No 268
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.40 E-value=0.015 Score=39.04 Aligned_cols=12 Identities=8% Similarity=0.019 Sum_probs=4.3
Q ss_pred CCCCCCHHHHHH
Q ss_conf 787988889999
Q 537021.9.peg.4 28 GTRGIGKTTTAR 39 (369)
Q Consensus 28 G~~G~GK~~~a~ 39 (369)
+..|+--..+.+
T Consensus 28 ~~~G~sl~~l~~ 39 (694)
T TIGR03375 28 EDGRLTPELLPR 39 (694)
T ss_pred CCCCCCHHHHHH
T ss_conf 999999999999
No 269
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.39 E-value=0.025 Score=37.30 Aligned_cols=36 Identities=31% Similarity=0.483 Sum_probs=26.0
Q ss_pred HHHHHHHCCCCCEE-EHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999982876706-2010787988889999999996
Q 537021.9.peg.4 10 TLTNAFKSGRIAQS-YMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 10 ~l~~~~~~~~~~ha-~lf~G~~G~GK~~~a~~~A~~l 45 (369)
.|-+.+--|=+|-+ .|+.|.||+||+|+..-.|..+
T Consensus 70 ElDRVLGGGiVpGSvvLlgGePGIGKSTLLLQia~~l 106 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARL 106 (372)
T ss_pred HHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 6654005773067179982599886889999999999
No 270
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.36 E-value=0.088 Score=33.28 Aligned_cols=132 Identities=17% Similarity=0.260 Sum_probs=70.7
Q ss_pred HHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999999982876706201078798888999999999614687778866587899977999977987782224533223
Q 537021.9.peg.4 7 MIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHT 86 (369)
Q Consensus 7 ~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~ 86 (369)
....+.+.+... |++.++.||+++||||+...+.+.+.-. ... -..|+ .. . ...
T Consensus 25 ~~~~l~~~~~~~--~~i~~i~GpR~~GKTtllk~l~~~~~~~--~iy------~~~~d------------~~---~-~~~ 78 (398)
T COG1373 25 LLPRLIKKLDLR--PFIILILGPRQVGKTTLLKLLIKGLLEE--IIY------INFDD------------LR---L-DRI 78 (398)
T ss_pred HHHHHHHHHCCC--CCEEEEECCCCCCHHHHHHHHHHHCCCC--EEE------EECCC------------CC---C-CHH
T ss_conf 779987650357--8549998886477899999999747773--599------97362------------00---0-135
Q ss_pred C-HHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHHHHHHHHH
Q ss_conf 3-45556655544565420465237751156648001678999997212211146650675----433035675433321
Q 537021.9.peg.4 87 S-IDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEI----RKIPITVLSRCQRFD 161 (369)
Q Consensus 87 ~-id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~----~~ll~TI~SRcq~~~ 161 (369)
. .|..+.+.+ .... +...+++||++.. .+=++++-.....++. -|++++.+. .++.++..=|--.+.
T Consensus 79 ~l~d~~~~~~~---~~~~--~~~yifLDEIq~v-~~W~~~lk~l~d~~~~--~v~itgsss~ll~~~~s~~L~GR~~~~~ 150 (398)
T COG1373 79 ELLDLLRAYIE---LKER--EKSYIFLDEIQNV-PDWERALKYLYDRGNL--DVLITGSSSSLLSKEISESLAGRGKDLE 150 (398)
T ss_pred HHHHHHHHHHH---HHCC--CCCEEEEEEECCC-HHHHHHHHHHHCCCCC--EEEEECCCHHHHCCCHHHHCCCCEEEEE
T ss_conf 67789999998---5222--5745999833376-1089999999756775--0999837167541330232499823789
Q ss_pred CCCCCCHHHHH
Q ss_conf 02454001356
Q 537021.9.peg.4 162 LHRISIGDLIE 172 (369)
Q Consensus 162 f~~l~~~~i~~ 172 (369)
+.|+|-.+...
T Consensus 151 l~PlSF~Efl~ 161 (398)
T COG1373 151 LYPLSFREFLK 161 (398)
T ss_pred ECCCCHHHHHH
T ss_conf 84888899864
No 271
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.35 E-value=0.034 Score=36.31 Aligned_cols=30 Identities=37% Similarity=0.634 Sum_probs=25.2
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 201078798888999999999614687778
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKTAHID 53 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~ 53 (369)
..|.|++|+||||+++.+|+.|++.--+.+
T Consensus 7 I~liG~~GsGKTtvgk~LA~~L~~~fiD~D 36 (175)
T PRK00131 7 IVLIGMMGAGKSTIGRLLAKRLGYEFIDTD 36 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 898889999989999999999596902398
No 272
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.35 E-value=0.012 Score=39.78 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=19.9
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 620107879888899999999961
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSLN 46 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l~ 46 (369)
-+-+.||.|+||+|+++.++..+.
T Consensus 36 ~v~ivG~sGsGKSTLl~ll~g~~~ 59 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 999999999879999999998728
No 273
>PRK13947 shikimate kinase; Provisional
Probab=96.34 E-value=0.027 Score=37.07 Aligned_cols=30 Identities=33% Similarity=0.500 Sum_probs=25.1
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 201078798888999999999614687778
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKTAHID 53 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~ 53 (369)
..|.|++|+||||+++.+|+.|++.--+.+
T Consensus 4 I~LiG~mGsGKTtiGk~La~~L~~~fiD~D 33 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKKVATTLSFGFIDTD 33 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECH
T ss_conf 899799999889999999999796989874
No 274
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.31 E-value=0.028 Score=36.90 Aligned_cols=12 Identities=8% Similarity=0.003 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999999999
Q 537021.9.peg.4 334 PMEAVEMVLIRL 345 (369)
Q Consensus 334 p~L~lE~lLlkL 345 (369)
+|+.+-..+++=
T Consensus 483 QRiaiARAll~~ 494 (575)
T PRK11160 483 RRLGIARALLHD 494 (575)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999999459
No 275
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.30 E-value=0.017 Score=38.53 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=18.8
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 62010787988889999999996
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l 45 (369)
-+-+.||.|+||+|+++.++..+
T Consensus 32 ~v~ivG~sGsGKSTLl~ll~gl~ 54 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999998999999996797
No 276
>pfam07693 KAP_NTPase KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.
Probab=96.30 E-value=0.13 Score=32.12 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHCCCC--CEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 999999999982876--70620107879888899999999961
Q 537021.9.peg.4 6 PMIKTLTNAFKSGRI--AQSYMLSGTRGIGKTTTARIIARSLN 46 (369)
Q Consensus 6 ~~~~~l~~~~~~~~~--~ha~lf~G~~G~GK~~~a~~~A~~l~ 46 (369)
...+.|.+.+.+-.. |-..=+.|+=|+|||++-..+.+.|.
T Consensus 3 ~~a~~la~~i~~~~~~~~~vIgl~G~WGsGKTs~l~~~~~~L~ 45 (301)
T pfam07693 3 KYAENLAKLLVEPSLAPGFVIGLYGAWGSGKTSFLNLLEDELK 45 (301)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7899999999577789997999989899999999999999986
No 277
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.30 E-value=0.023 Score=37.61 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999999999
Q 537021.9.peg.4 334 PMEAVEMVLIRL 345 (369)
Q Consensus 334 p~L~lE~lLlkL 345 (369)
+|+++=..+++=
T Consensus 483 QRiaiARall~~ 494 (593)
T PRK10790 483 QLLALARVLVET 494 (593)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999999559
No 278
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.27 E-value=0.016 Score=38.79 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=20.5
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 7062010787988889999999996
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~l 45 (369)
-| |.+.||.|.||||+.++++...
T Consensus 58 e~-W~I~G~NGsGKTTLL~ll~~~~ 81 (257)
T COG1119 58 EH-WAIVGPNGAGKTTLLSLLTGEH 81 (257)
T ss_pred CC-EEEECCCCCCHHHHHHHHHCCC
T ss_conf 84-7998889877899999996125
No 279
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.26 E-value=0.02 Score=37.96 Aligned_cols=30 Identities=37% Similarity=0.510 Sum_probs=25.0
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 201078798888999999999614687778
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKTAHID 53 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~ 53 (369)
..+.|++|+||||+++.+|+.|+..--+.+
T Consensus 7 I~LiG~mGsGKstvgk~LA~~l~~~fiD~D 36 (172)
T PRK05057 7 IFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36 (172)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECH
T ss_conf 898899999889999999999699968780
No 280
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.26 E-value=0.022 Score=37.78 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=19.3
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 620107879888899999999961
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSLN 46 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l~ 46 (369)
-.-+.||.|+||+|+++.++..+.
T Consensus 49 ~vaIvG~sGsGKSTL~~ll~gl~~ 72 (257)
T cd03288 49 KVGICGRTGSGKSSLSLAFFRMVD 72 (257)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999999819999999960566
No 281
>KOG0478 consensus
Probab=96.24 E-value=0.0031 Score=44.02 Aligned_cols=146 Identities=18% Similarity=0.196 Sum_probs=79.4
Q ss_pred CCCHHHHHHHHHHHHHCC---------CC---CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 928489999999999828---------76---706201078798888999999999614687778866587899977999
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSG---------RI---AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQA 68 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~---------~~---~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~ 68 (369)
|-|++.+++.|--++-.| |. -| .|++|.||+||+-+-...++.+- +.. -..|+..+...
T Consensus 431 Iye~edvKkglLLqLfGGt~k~~~~~~~~R~~IN-ILL~GDPGtsKSqlLqyv~~l~p---Rg~-----yTSGkGsSavG 501 (804)
T KOG0478 431 IYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDIN-ILLVGDPGTSKSQLLQYCHRLLP---RGV-----YTSGKGSSAVG 501 (804)
T ss_pred HHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCE-EEEECCCCCCHHHHHHHHHHHCC---CCE-----EECCCCCCHHC
T ss_conf 5344226666778875687632233444245522-89946998678999999997477---540-----40587630220
Q ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHH-HHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCC-----C-----
Q ss_conf 977987782224533223345556655-54456542046523775115664800167899999721221-----1-----
Q 537021.9.peg.4 69 IIRGNHVDVVELDAASHTSIDDVREII-DQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPH-----V----- 137 (369)
Q Consensus 69 i~~~~~~d~~e~~~~s~~~id~ir~l~-~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~-----~----- 137 (369)
....- ++--+-|++. +.-.+ .-++.-|+-|||.|+|+..+.+-|+-.||--.-. .
T Consensus 502 LTayV------------trd~dtkqlVLesGAL--VLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLN 567 (804)
T KOG0478 502 LTAYV------------TKDPDTRQLVLESGAL--VLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLN 567 (804)
T ss_pred CEEEE------------EECCCCCEEEEECCCE--EECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECC
T ss_conf 03567------------7657655466504848--972896577112333327788999999987631174302234216
Q ss_pred --CEEEEECCCC--------------CCCHHHHHHHHHHHCCCCCCHH
Q ss_conf --1466506754--------------3303567543332102454001
Q 537021.9.peg.4 138 --KFIFATTEIR--------------KIPITVLSRCQRFDLHRISIGD 169 (369)
Q Consensus 138 --~fil~t~~~~--------------~ll~TI~SRcq~~~f~~l~~~~ 169 (369)
-=||+|.||. .|+||+.||.-.+.+--=.+++
T Consensus 568 AR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE 615 (804)
T KOG0478 568 ARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDE 615 (804)
T ss_pred CCCEEEEEECCCCCCCCCCCCHHHCCCCCHHHHHHHCEEEEEECCCCH
T ss_conf 653034453543245799976232167880564323378998427532
No 282
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.23 E-value=0.047 Score=35.26 Aligned_cols=13 Identities=15% Similarity=0.054 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8999999999995
Q 537021.9.peg.4 334 PMEAVEMVLIRLA 346 (369)
Q Consensus 334 p~L~lE~lLlkL~ 346 (369)
+|+++=.++++=.
T Consensus 458 QRialARAll~~p 470 (569)
T PRK10789 458 QRISIARALLLNA 470 (569)
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999995499
No 283
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=96.22 E-value=0.026 Score=37.13 Aligned_cols=139 Identities=19% Similarity=0.316 Sum_probs=67.9
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC-----CCCCCCCHH-HHHHHCCCCCCCC-C---CCCCC----CCCH
Q ss_conf 6201078798888999999999614687778866-----587899977-9999779877822-2---45332----2334
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPT-----VEFEGFGEH-CQAIIRGNHVDVV-E---LDAAS----HTSI 88 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~-----~~~c~~c~~-c~~i~~~~~~d~~-e---~~~~s----~~~i 88 (369)
-.|++|=|||||||++-.+=.+|+-.......|- .-|=|+--. -..+...+.-++- + ||++- ...+
T Consensus 244 f~li~GGPGTGKTTTv~~LL~al~~~~~~~G~~~~~I~l~APTGKAa~RL~esl~~~~~~L~~~~~aid~~~~~~~~~~~ 323 (753)
T TIGR01447 244 FSLITGGPGTGKTTTVARLLLALIKQSPKQGKPRLRIALAAPTGKAAARLAESLRKAVKKLAAENMAIDEDLIAALPSEA 323 (753)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHH
T ss_conf 68998798897789999999999998986499740478866844799999999998863223423665879854872045
Q ss_pred HHHHHHHHHHH-----HHHHCC---CCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCC--------EEEEECCCCCCCHH
Q ss_conf 55566555445-----654204---652377511566480016789999972122111--------46650675433035
Q 537021.9.peg.4 89 DDVREIIDQIY-----YKPISA---RFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVK--------FIFATTEIRKIPIT 152 (369)
Q Consensus 89 d~ir~l~~~~~-----~~p~~~---~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~--------fil~t~~~~~ll~T 152 (369)
..|..|+.... ++-.+. .+=|+|||||=|++-.=--.|++++ |+++. .||+... ++|
T Consensus 324 ~TiHrLLG~~~I~~~~fr~h~~N~L~~DVLvvDEaSMVdl~lm~kL~~A~---~~~~k~~KLy~~~LIllGD~-nQL--- 396 (753)
T TIGR01447 324 TTIHRLLGIKPIDTKRFRHHERNPLPLDVLVVDEASMVDLPLMAKLLKAL---PPNTKDKKLYADRLILLGDK-NQL--- 396 (753)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCHHCCHHHHHHHHHHC---CCCCCCCCHHHCCCCEECCC-CCC---
T ss_conf 68888616614787677677778898552787060022679999999722---63001320101020012267-888---
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 67543332102454001356787643
Q 537021.9.peg.4 153 VLSRCQRFDLHRISIGDLIELFTKIL 178 (369)
Q Consensus 153 I~SRcq~~~f~~l~~~~i~~~L~~i~ 178 (369)
+|+...++-.-|...+
T Consensus 397 ----------~sveaG~Vl~~l~~~~ 412 (753)
T TIGR01447 397 ----------PSVEAGAVLGDLCELA 412 (753)
T ss_pred ----------CCCCHHHHHHHHHHHH
T ss_conf ----------8754355579999997
No 284
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.21 E-value=0.025 Score=37.30 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=23.9
Q ss_pred HHHHHHCCCCC-EEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999828767-062010787988889999999996
Q 537021.9.peg.4 11 LTNAFKSGRIA-QSYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 11 l~~~~~~~~~~-ha~lf~G~~G~GK~~~a~~~A~~l 45 (369)
|-+.+.-|=.+ ...+++||||+|||++|.-+|...
T Consensus 12 lD~~LgGGi~~G~itei~G~pG~GKTtl~lq~a~~~ 47 (224)
T PRK09361 12 LDELLGGGIERGTITQIYGPPGSGKTNICIQLAVEA 47 (224)
T ss_pred HHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 998626998888799998999985999999999999
No 285
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.20 E-value=0.026 Score=37.13 Aligned_cols=127 Identities=20% Similarity=0.211 Sum_probs=60.5
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCC---CCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 2010787988889999999996146877788665878999779999779---8778222453322334555665554456
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRG---NHVDVVELDAASHTSIDDVREIIDQIYY 100 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~---~~~d~~e~~~~s~~~id~ir~l~~~~~~ 100 (369)
..|.|+.|+||||+++.+|+.|+..--+.+. .|... +-+++++-.|. +.-|++-..+-.
T Consensus 5 IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~-------------~Ie~~~g~sI~eIF~~~GE-----~~FR~~E~~vl~ 66 (172)
T COG0703 5 IVLIGFMGAGKSTIGRALAKALNLPFIDTDQ-------------EIEKRTGMSIAEIFEEEGE-----EGFRRLETEVLK 66 (172)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCHH-------------HHHHHHCCCHHHHHHHHHH-----HHHHHHHHHHHH
T ss_conf 8997179997768999999981998022469-------------9999979699999999828-----999999999999
Q ss_pred HHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHH-HHHHHHHH
Q ss_conf 54204652377511566480016789999972122111466506754330356754333210245400135-67876431
Q 537021.9.peg.4 101 KPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLI-ELFTKILQ 179 (369)
Q Consensus 101 ~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~-~~L~~i~~ 179 (369)
.-......|+=--.-=-|+.+.-++|.+ +.+-|++.. =++++..|++.-+=+|+-...-. +.|.++.+
T Consensus 67 ~l~~~~~~ViaTGGG~v~~~enr~~l~~-------~g~vv~L~~----~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~ 135 (172)
T COG0703 67 ELLEEDNAVIATGGGAVLSEENRNLLKK-------RGIVVYLDA----PFETLYERLQRDRKRPLLQTEDPREELEELLE 135 (172)
T ss_pred HHHHCCCEEEECCCCCCCCHHHHHHHHH-------CCEEEEEEC----CHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 9862699599779861168999999984-------885899969----99999998234667986567776899999999
No 286
>KOG0726 consensus
Probab=96.17 E-value=0.036 Score=36.13 Aligned_cols=135 Identities=21% Similarity=0.301 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHHC-----------C-CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 848999999999982-----------8-7670620107879888899999999961468777886658789997799997
Q 537021.9.peg.4 3 GQKPMIKTLTNAFKS-----------G-RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAII 70 (369)
Q Consensus 3 Gq~~~~~~l~~~~~~-----------~-~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~ 70 (369)
|-+.-++.++.+++- | +-|...+++|+||+|||.+|.+.|.. ++..+-- .-|+ .-.+-.
T Consensus 189 Gle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANq---TSATFlR----vvGs--eLiQky 259 (440)
T KOG0726 189 GLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQ---TSATFLR----VVGS--ELIQKY 259 (440)
T ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCC---CCHHHHH----HHHH--HHHHHH
T ss_conf 578999999986338889878999728899970588679997536888877245---5212455----6508--999987
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHCCCCCEEEEECHHHCC-----------CCHHHHHHHHHHH-----C
Q ss_conf 79877822245332233455566555445-65420465237751156648-----------0016789999972-----1
Q 537021.9.peg.4 71 RGNHVDVVELDAASHTSIDDVREIIDQIY-YKPISARFRVYIMDEVQMLS-----------TAAFNGLLKTLEE-----P 133 (369)
Q Consensus 71 ~~~~~d~~e~~~~s~~~id~ir~l~~~~~-~~p~~~~~kv~iid~a~~m~-----------~~a~NaLLK~lEE-----P 133 (369)
-| -|-.-+|++..-+. .+| -|++|||.|..- ++-|-.+|-.|-. -
T Consensus 260 lG-------------dGpklvRqlF~vA~e~ap-----SIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds 321 (440)
T KOG0726 260 LG-------------DGPKLVRELFRVAEEHAP-----SIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS 321 (440)
T ss_pred HC-------------CCHHHHHHHHHHHHHCCC-----CEEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 36-------------551999999988875298-----269864001104521347885078999999999874268665
Q ss_pred CCCCCEEEEECCCCCCCHHH-HHHH--HHHHCCC
Q ss_conf 22111466506754330356-7543--3321024
Q 537021.9.peg.4 134 PPHVKFIFATTEIRKIPITV-LSRC--QRFDLHR 164 (369)
Q Consensus 134 p~~~~fil~t~~~~~ll~TI-~SRc--q~~~f~~ 164 (369)
-..+..|++|+..+.|=|.+ |--+ ..+.|..
T Consensus 322 rgDvKvimATnrie~LDPaLiRPGrIDrKIef~~ 355 (440)
T KOG0726 322 RGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL 355 (440)
T ss_pred CCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCCC
T ss_conf 6775899741653446775527875431112579
No 287
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001 This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=96.16 E-value=0.041 Score=35.73 Aligned_cols=121 Identities=23% Similarity=0.301 Sum_probs=72.1
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC-----CCC-----CH-----
Q ss_conf 201078798888999999999614687778866587899977999977987782224533-----223-----34-----
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA-----SHT-----SI----- 88 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~-----s~~-----~i----- 88 (369)
|++-|+.||||||+|..+|+.|- .-+||...|||. -|+ |+
T Consensus 1 ~VlmGvaG~GKs~~a~~l~~~lg-------------------------~iyPd~~yieGDdLHP~~Ni~KMs~GiPL~Dd 55 (175)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG-------------------------DIYPDAKYIEGDDLHPAANIEKMSRGIPLNDD 55 (175)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH-------------------------HHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
T ss_conf 96760278628899999999854-------------------------31578875688666787779873178888701
Q ss_pred ---HHHHHHHHHHHHHHHCCCCC-EEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf ---55566555445654204652-37751156648001678999997212211146650675433035675433321024
Q 537021.9.peg.4 89 ---DDVREIIDQIYYKPISARFR-VYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHR 164 (369)
Q Consensus 89 ---d~ir~l~~~~~~~p~~~~~k-v~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f~~ 164 (369)
+.-..+.+.+...-..++-+ ++|.-.| |=+.==.-|+..+|++++++-||...-...-++.=..+|-=||
T Consensus 56 DR~pWL~~l~~~~~~~~~~~~~~~~~~~CSA--LKr~YRD~LR~s~~~~~~~~~FiyL~~~~~~~~~R~~~RkGHF---- 129 (175)
T TIGR01313 56 DRWPWLKNLADALAQAAAKNKVHLVIITCSA--LKRKYRDILRSSLEEAEPELHFIYLSGSKEVILKRMKSRKGHF---- 129 (175)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCEEEEEEC--CHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCC----
T ss_conf 2043799999999999845774544788401--1135556654220268984378863689899999961078998----
Q ss_pred CCCHHHHHHHH
Q ss_conf 54001356787
Q 537021.9.peg.4 165 ISIGDLIELFT 175 (369)
Q Consensus 165 l~~~~i~~~L~ 175 (369)
.+...|...++
T Consensus 130 Mka~m~~SQf~ 140 (175)
T TIGR01313 130 MKADMLESQFE 140 (175)
T ss_pred CCCHHHHHHHH
T ss_conf 62047899999
No 288
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=96.16 E-value=0.033 Score=36.45 Aligned_cols=203 Identities=20% Similarity=0.258 Sum_probs=106.8
Q ss_pred CCCHHHHHHHHHHHHH---CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCHHHHHHHC--CCC
Q ss_conf 9284899999999998---287670620107879888899999999961468777886658-7899977999977--987
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFK---SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVE-FEGFGEHCQAIIR--GNH 74 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~---~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~-~c~~c~~c~~i~~--~~~ 74 (369)
|||+..+...+...|+ ....+ .|+.|..|+||--+||++-+. ++..+.|-+. -|.--+.- ...+ ..|
T Consensus 225 iIG~S~am~~ll~~i~~VA~Sd~t--VLi~GETGtGKElvAraIH~~----S~R~~kPfV~~NCAAlPes-LlESELFGH 297 (550)
T COG3604 225 IIGRSPAMRQLLKEIEVVAKSDST--VLIRGETGTGKELVARAIHQL----SPRRDKPFVKLNCAALPES-LLESELFGH 297 (550)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCE--EEEECCCCCCHHHHHHHHHHH----CCCCCCCCEEEECCCCCHH-HHHHHHHCC
T ss_conf 230699999999999987268980--798458885389999999873----7555798666312225378-888887453
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC-----------CCCCEEEEE
Q ss_conf 782224533223345556655544565420465237751156648001678999997212-----------211146650
Q 537021.9.peg.4 75 VDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP-----------PHVKFIFAT 143 (369)
Q Consensus 75 ~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp-----------~~~~fil~t 143 (369)
|- ||- +|..--| .. .|--..| --.++||.-.|.-.-|-.||+.|-|-- -.|..|-+
T Consensus 298 ----eK-GAF-TGA~~~r--~G--rFElAdG--GTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAA- 364 (550)
T COG3604 298 ----EK-GAF-TGAINTR--RG--RFELADG--GTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAA- 364 (550)
T ss_pred ----CC-CCC-CCCHHCC--CC--CEEECCC--CEEECHHHCCCCHHHHHHHHHHHHHCCEEECCCCCEEEEEEEEEEC-
T ss_conf ----32-233-3510146--76--3565579--7576022036787788999999863652534799636777899821-
Q ss_pred CCCC--------CCCHHHHHHHHHHHC--CCCCC--HHH----HHHHHHHHHHCC---CCCCHHHHHHHHHC-CCCCCCH
Q ss_conf 6754--------330356754333210--24540--013----567876431013---45625664456531-6764200
Q 537021.9.peg.4 144 TEIR--------KIPITVLSRCQRFDL--HRISI--GDL----IELFTKILQEES---IEFDPEAVAMIARA-SDGSARD 203 (369)
Q Consensus 144 ~~~~--------~ll~TI~SRcq~~~f--~~l~~--~~i----~~~L~~i~~~E~---i~~d~~~l~~ia~~-s~GslR~ 203 (369)
||-+ +.-.-.--|--+|++ +|+-. ++| ..++++....-| +.+++++++.+.++ .-||+|.
T Consensus 365 TNRDL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRE 444 (550)
T COG3604 365 TNRDLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRE 444 (550)
T ss_pred CCHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCHHH
T ss_conf 35309999874951554532102001378983458866799999999999886397640339899999973999971999
Q ss_pred HHHCCCCCCCHHHCCCCHHH
Q ss_conf 11000111000000121032
Q 537021.9.peg.4 204 GLSLLDQAIARCNDKIVTSS 223 (369)
Q Consensus 204 Al~lLeq~i~~~~~~i~~e~ 223 (369)
-.+.++++....+..++.++
T Consensus 445 Len~veRavlla~~~~~~~d 464 (550)
T COG3604 445 LENVVERAVLLAGRLTRRGD 464 (550)
T ss_pred HHHHHHHHHHHCCCCCCCCC
T ss_conf 99899999997047677765
No 289
>PRK13946 shikimate kinase; Provisional
Probab=96.15 E-value=0.037 Score=36.08 Aligned_cols=39 Identities=28% Similarity=0.377 Sum_probs=28.9
Q ss_pred HHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9999982876706201078798888999999999614687778
Q 537021.9.peg.4 11 LTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHID 53 (369)
Q Consensus 11 l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~ 53 (369)
+..++..+ ...|.|++|+||||+++.+|+.|++.--+.+
T Consensus 14 ~~~~l~kk----nIvLIG~mGsGKStvGk~LA~~L~~~fiD~D 52 (195)
T PRK13946 14 IRAALGKR----TVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 52 (195)
T ss_pred HHHHHCCC----CEEEECCCCCCHHHHHHHHHHHHCCCEEECH
T ss_conf 99985899----5899899999889999999999797989885
No 290
>PRK13949 shikimate kinase; Provisional
Probab=96.12 E-value=0.026 Score=37.18 Aligned_cols=30 Identities=37% Similarity=0.535 Sum_probs=25.2
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 201078798888999999999614687778
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKTAHID 53 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~ 53 (369)
..|.|++|+||||+++.+|+.|++.--+.+
T Consensus 4 I~LiG~mGsGKstiGk~La~~l~~~fiD~D 33 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECC
T ss_conf 899799999889999999999599979784
No 291
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=96.12 E-value=0.0038 Score=43.35 Aligned_cols=90 Identities=24% Similarity=0.292 Sum_probs=50.3
Q ss_pred HHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 98287670620107879888899999999961468777886658789997799997798778222453322334555665
Q 537021.9.peg.4 15 FKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREI 94 (369)
Q Consensus 15 ~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l 94 (369)
++.|-|-+ ++||||+|||+++...|. .+. ..| -.+++||-.+--++|-+|.+
T Consensus 9 vE~G~iTQ---iYGp~G~GKTn~c~~~a~----~a~-------------------~~G--k~v~YiDTEGGLS~ER~~q~ 60 (223)
T TIGR02237 9 VERGIITQ---IYGPPGSGKTNICLILAV----NAA-------------------RQG--KKVVYIDTEGGLSPERFKQI 60 (223)
T ss_pred CCCCEEEE---EECCCCCCHHHHHHHHHH----HHH-------------------HCC--CCEEEEECCCCCHHHHHHHH
T ss_conf 12035889---875899867899999999----998-------------------618--95899962898328999998
Q ss_pred HHHHHHHHHCCCCCEEEEECHHHCCCCH--HHHHHHHHHHC
Q ss_conf 5544565420465237751156648001--67899999721
Q 537021.9.peg.4 95 IDQIYYKPISARFRVYIMDEVQMLSTAA--FNGLLKTLEEP 133 (369)
Q Consensus 95 ~~~~~~~p~~~~~kv~iid~a~~m~~~a--~NaLLK~lEEP 133 (369)
.+.-..-|-..--+++| -+++.++.|. -....|+++.-
T Consensus 61 ~~~~~~D~e~~~~~~iv-~~~~~f~eQ~~ai~~~~~~~~~~ 100 (223)
T TIGR02237 61 AEDRALDPERVLSNVIV-FEVFDFDEQEVAIQKTSKLIDRD 100 (223)
T ss_pred HHCCCCCHHHHHCCEEE-ECCCCHHHHHHHHHHHHHHHHCC
T ss_conf 63058898888415355-23535678999999999998606
No 292
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.09 E-value=0.016 Score=38.72 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=18.8
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 62010787988889999999996
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l 45 (369)
-+-+.||.|+||||+++.+...+
T Consensus 29 ~v~ivG~sGsGKSTLl~ll~gl~ 51 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999998999999974385
No 293
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.07 E-value=0.046 Score=35.36 Aligned_cols=137 Identities=15% Similarity=0.188 Sum_probs=63.3
Q ss_pred HHHHHHCCCCC--EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH-HHHCCCCCCCC---------
Q ss_conf 99999828767--0620107879888899999999961468777886658789997799-99779877822---------
Q 537021.9.peg.4 11 LTNAFKSGRIA--QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQ-AIIRGNHVDVV--------- 78 (369)
Q Consensus 11 l~~~~~~~~~~--ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~-~i~~~~~~d~~--------- 78 (369)
|-+.+. |.+| ..+|..|.+|+||+.++.-|+... |.++..... ...-.+...-. .+.+ =..|+.
T Consensus 13 ld~~lg-gGip~gs~~li~G~~GtGKsi~~~~~~~~~-l~~g~~~~y-is~e~t~~~~i~qm~s-~g~di~~~~~~G~l~ 88 (230)
T PRK08533 13 LHKRLG-GGIPFGSIILIEGDESTGKSILSQRLAYGF-LQNGYSVSY-VSSQLTTTEFIKQMMS-LGYDINKKLISGKLL 88 (230)
T ss_pred HHHHHC-CCCCCCCEEEEECCCCCCHHHHHHHHHHHH-HHCCCEEEE-EEECCCHHHHHHHHHH-CCCCCHHHHHCCCEE
T ss_conf 788717-898898489998689987899999999999-878986999-9943899999999998-699817997579679
Q ss_pred CCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHC-----CCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCH
Q ss_conf 245332-2334555665554456542046523775115664-----800167899999721221114665067543303
Q 537021.9.peg.4 79 ELDAAS-HTSIDDVREIIDQIYYKPISARFRVYIMDEVQML-----STAAFNGLLKTLEEPPPHVKFIFATTEIRKIPI 151 (369)
Q Consensus 79 e~~~~s-~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m-----~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~ 151 (369)
.++... ..+..+-+++++.+--.+..-...|+|||....+ +.++...++..+..--+.-..|++|-+|..+.+
T Consensus 89 ~i~~~~~~~~~~~~~~~L~~ll~~~~~~~~dvIIIDSlS~l~~~~~~~~~~~~~~~~lk~l~s~gktIilTv~p~~~~e 167 (230)
T PRK08533 89 YIPVYPLLSGNSEKRDFLDKLMNTRRFYEKDVVIIDSLSSLVSRDASEVQIRDLMAFFKRISSLNKVIILTANPKELPE 167 (230)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH
T ss_conf 9961343354045789999997326643798999905318851677789999999999999858988999956331362
No 294
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.06 E-value=0.037 Score=36.07 Aligned_cols=15 Identities=13% Similarity=0.113 Sum_probs=9.1
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 889999999999953
Q 537021.9.peg.4 333 RPMEAVEMVLIRLAH 347 (369)
Q Consensus 333 np~L~lE~lLlkL~~ 347 (369)
-+|+++=.++++=..
T Consensus 491 rQRiaiARAll~~~~ 505 (588)
T PRK11174 491 AQRLALARALLQPCQ 505 (588)
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999999837989
No 295
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.06 E-value=0.0092 Score=40.49 Aligned_cols=118 Identities=14% Similarity=0.182 Sum_probs=61.1
Q ss_pred EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH---HHHHHHC-----CCCCCCCCCCCCCCC-CHHHHH
Q ss_conf 0620107879888899999999961468777886658789997---7999977-----987782224533223-345556
Q 537021.9.peg.4 22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGE---HCQAIIR-----GNHVDVVELDAASHT-SIDDVR 92 (369)
Q Consensus 22 ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~---~c~~i~~-----~~~~d~~e~~~~s~~-~id~ir 92 (369)
.-+.+.||.|+||+|+.+.++..+....+... ..|..- +-..+.. .+.|-++.-.-..|+ +--|-+
T Consensus 29 e~i~ivG~sGsGKSTLl~ll~gl~~p~~G~I~-----i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~tv~eNiLSgGq~Q 103 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL-----IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQ 103 (171)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE-----ECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHCCCHHHHH
T ss_conf 89999999998399999999767758974899-----9999988599899863189996668437577999774488999
Q ss_pred HHHHHHHHHHHCCCCCEEEEECHH-HCCCCHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 655544565420465237751156-6480016789999972122111466506754
Q 537021.9.peg.4 93 EIIDQIYYKPISARFRVYIMDEVQ-MLSTAAFNGLLKTLEEPPPHVKFIFATTEIR 147 (369)
Q Consensus 93 ~l~~~~~~~p~~~~~kv~iid~a~-~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~ 147 (369)
.+ +--+..-.+.+|+|+||+- .|-..+...+.+.+.+-..+...|++|++++
T Consensus 104 ri---~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~Tvi~vtH~~~ 156 (171)
T cd03228 104 RI---AIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLS 156 (171)
T ss_pred HH---HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHH
T ss_conf 99---999999748998999577667998999999999999809998999957999
No 296
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.04 E-value=0.014 Score=39.14 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=32.5
Q ss_pred CCCHHH----HHHHHHHHHHCCCCC-EEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 928489----999999999828767-062010787988889999999996
Q 537021.9.peg.4 1 MIGQKP----MIKTLTNAFKSGRIA-QSYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 1 iiGq~~----~~~~l~~~~~~~~~~-ha~lf~G~~G~GK~~~a~~~A~~l 45 (369)
+.|++. ++..++.+.+.+... ..++|.||+|.||+|+++.+-+.+
T Consensus 53 ~fG~e~~i~~~V~~~k~AA~g~~~~k~IllL~GPvGsGKStl~~~Lk~~l 102 (361)
T smart00763 53 FFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred HCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 11648999999999999984467125699998899887799999999999
No 297
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.01 E-value=0.021 Score=37.86 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=19.0
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 62010787988889999999996
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l 45 (369)
-+-+.||.|+||+|+++.++..+
T Consensus 42 ~vaIvG~sGsGKSTL~~ll~gl~ 64 (226)
T cd03248 42 VTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999984999999996454
No 298
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.01 E-value=0.066 Score=34.21 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=18.9
Q ss_pred EEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 062010787988889999999996
Q 537021.9.peg.4 22 QSYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 22 ha~lf~G~~G~GK~~~a~~~A~~l 45 (369)
.-+.+.||.|+||||+.+.++..+
T Consensus 37 e~vaivG~nGsGKSTLlk~l~Gll 60 (273)
T PRK13632 37 EYVAILGHNGSGKSTISKILTGLL 60 (273)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 899999999986999999997387
No 299
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.00 E-value=0.068 Score=34.08 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999999828767062010787988889999999996
Q 537021.9.peg.4 6 PMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 6 ~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l 45 (369)
.+...|+.+|+.++ ..+++|..|+||||+.+++...+
T Consensus 150 ~~~~fL~~aV~~r~---NIlIsGgTGSGKTTllnALl~~I 186 (343)
T PRK13851 150 DLEAFLHACVVGRL---TMLLCGPTGSGKTTMSKTLISAI 186 (343)
T ss_pred HHHHHHHHHHHCCC---CEEEECCCCCCHHHHHHHHHHCC
T ss_conf 79999999997698---89998889861999999999628
No 300
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.99 E-value=0.066 Score=34.17 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=18.5
Q ss_pred EEHHCCCCCCCHHHHHHHHHHH
Q ss_conf 6201078798888999999999
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARS 44 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~ 44 (369)
-++++||.|+||+|++..+.+.
T Consensus 3 livl~GpsG~GK~tl~~~l~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899988999999999976
No 301
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=95.97 E-value=0.017 Score=38.63 Aligned_cols=28 Identities=36% Similarity=0.430 Sum_probs=24.4
Q ss_pred CCCCEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 8767062010787988889999999996
Q 537021.9.peg.4 18 GRIAQSYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 18 ~~~~ha~lf~G~~G~GK~~~a~~~A~~l 45 (369)
++-|+-+||.|=-|+||||++=-+|..|
T Consensus 99 ~~~P~vilmvGLQGsGKTTt~gKLA~~l 126 (439)
T TIGR00959 99 EKRPTVILMVGLQGSGKTTTAGKLALYL 126 (439)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7868389973137885788999999999
No 302
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.96 E-value=0.028 Score=36.95 Aligned_cols=28 Identities=25% Similarity=0.339 Sum_probs=20.9
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 6201078798888999999999614687
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSLNYKTA 50 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~ 50 (369)
-+-+.||.|+||+|+++.+...+....+
T Consensus 30 ~vaivG~sGsGKSTll~ll~gl~~p~~G 57 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKLIQRFYVPENG 57 (237)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 9999999998599999999677657987
No 303
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=95.96 E-value=0.039 Score=35.91 Aligned_cols=40 Identities=20% Similarity=0.212 Sum_probs=27.2
Q ss_pred HHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 9999999998287670620107879888899999999961
Q 537021.9.peg.4 7 MIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLN 46 (369)
Q Consensus 7 ~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~ 46 (369)
....|...+....=+|-.=++||||.||+|+.-.|++.+-
T Consensus 35 ~~~ll~~l~~~~g~a~~iGiTG~pG~GKStli~~l~~~~~ 74 (325)
T PRK09435 35 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLI 74 (325)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9999998630179825997427999868899999999999
No 304
>KOG2543 consensus
Probab=95.91 E-value=0.041 Score=35.68 Aligned_cols=161 Identities=18% Similarity=0.217 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHHCC--CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH----HHCC----
Q ss_conf 8489999999999828--76706201078798888999999999614687778866587899977999----9779----
Q 537021.9.peg.4 3 GQKPMIKTLTNAFKSG--RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQA----IIRG---- 72 (369)
Q Consensus 3 Gq~~~~~~l~~~~~~~--~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~----i~~~---- 72 (369)
+-+.-+..|...+-++ .+|-...++|-.|+|||.+.|.+=+.+|-++.-. -|-.|-+-+- |...
T Consensus 10 ~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~------n~~ecft~~~lle~IL~~~~~~ 83 (438)
T KOG2543 10 CRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWL------NCVECFTYAILLEKILNKSQLA 83 (438)
T ss_pred CHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEE------EHHHHCCHHHHHHHHHHHHCCC
T ss_conf 4689999999984789866651579961478745599999986037863054------1577516799999999873567
Q ss_pred -CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH--CCCCCEEEE-ECHHHCCCCHHH---HHHHHHHH-CCCCCCEEEEEC
Q ss_conf -8778222453322334555665554456542--046523775-115664800167---89999972-122111466506
Q 537021.9.peg.4 73 -NHVDVVELDAASHTSIDDVREIIDQIYYKPI--SARFRVYIM-DEVQMLSTAAFN---GLLKTLEE-PPPHVKFIFATT 144 (369)
Q Consensus 73 -~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~--~~~~kv~ii-d~a~~m~~~a~N---aLLK~lEE-Pp~~~~fil~t~ 144 (369)
.-+|..+.+ -+-+-+.+..+..-|. +-+++|||| |.||.++.-.+| .|++.=|= +-+.+.|||..+
T Consensus 84 d~dg~~~~~~------~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~ 157 (438)
T KOG2543 84 DKDGDKVEGD------AENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAP 157 (438)
T ss_pred CCCHHHHHHH------HHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 8740555427------9999999999984477644674499997477766306507889999899873777369998326
Q ss_pred CCCCCCH--HHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 7543303--567543332102454001356787
Q 537021.9.peg.4 145 EIRKIPI--TVLSRCQRFDLHRISIGDLIELFT 175 (369)
Q Consensus 145 ~~~~ll~--TI~SRcq~~~f~~l~~~~i~~~L~ 175 (369)
.+++.-. |=.+---.+.|+..+.+++...|.
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~ 190 (438)
T KOG2543 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILS 190 (438)
T ss_pred CCHHHHHCCCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf 667775214677786478538778899999984
No 305
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.91 E-value=0.012 Score=39.60 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=23.0
Q ss_pred EEEHHCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 062010787988889999999996146877
Q 537021.9.peg.4 22 QSYMLSGTRGIGKTTTARIIARSLNYKTAH 51 (369)
Q Consensus 22 ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~ 51 (369)
.-+-+.||.|+||+|+.++++..+....+.
T Consensus 29 e~~aivG~sGsGKSTLl~~l~G~~~p~~G~ 58 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKPQQGE 58 (178)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCE
T ss_conf 999999999875999999998617667886
No 306
>KOG1805 consensus
Probab=95.90 E-value=0.014 Score=39.13 Aligned_cols=141 Identities=24% Similarity=0.277 Sum_probs=72.7
Q ss_pred HHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCC----------CCCC--CCCCCCCHHHHHHHCCCCC
Q ss_conf 999999998287670620107879888899999999961468777----------8866--5878999779999779877
Q 537021.9.peg.4 8 IKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHI----------DVPT--VEFEGFGEHCQAIIRGNHV 75 (369)
Q Consensus 8 ~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~----------~~~~--~~~c~~c~~c~~i~~~~~~ 75 (369)
.+++.+++... .+ .|..|.||+||||+.-.+-|.|....... +... ..+||.-----.-.+..||
T Consensus 675 r~A~~k~L~ae--dy-~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~~kih~ 751 (1100)
T KOG1805 675 RQALLKALAAE--DY-ALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSEEKIHP 751 (1100)
T ss_pred HHHHHHHHHCC--CH-HEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHCCCCCEEECCCCCCCCH
T ss_conf 99999987303--32-2032699898122599999999973881899850567889999987506711034487222446
Q ss_pred CCCCCC---CCCCCCHHHHHHHHHHHHH---------HHHC--CCCCEEEEECHHHCCCCHHHHHHHHHHHCCCC-CCEE
Q ss_conf 822245---3322334555665554456---------5420--46523775115664800167899999721221-1146
Q 537021.9.peg.4 76 DVVELD---AASHTSIDDVREIIDQIYY---------KPIS--ARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPH-VKFI 140 (369)
Q Consensus 76 d~~e~~---~~s~~~id~ir~l~~~~~~---------~p~~--~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~-~~fi 140 (369)
|+.|.. +.|--++++++...+..+. .|.- -.|-++|||||-++...-. |- |-.. -.|+
T Consensus 752 ~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf~~R~FD~cIiDEASQI~lP~~---Lg----PL~~s~kFV 824 (1100)
T KOG1805 752 DVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLFVNRQFDYCIIDEASQILLPLC---LG----PLSFSNKFV 824 (1100)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCEEEECCCCCCCCCHH---HH----HHHHCCEEE
T ss_conf 89987123445453399999972897679997157886555214267899865111143421---21----021123589
Q ss_pred EEECCCCCCCHHHHHHHHH
Q ss_conf 6506754330356754333
Q 537021.9.peg.4 141 FATTEIRKIPITVLSRCQR 159 (369)
Q Consensus 141 l~t~~~~~ll~TI~SRcq~ 159 (369)
|+. ++.+|+|-.+||=-+
T Consensus 825 LVG-Dh~QLpPLV~s~ear 842 (1100)
T KOG1805 825 LVG-DHYQLPPLVRSSEAR 842 (1100)
T ss_pred EEC-CCCCCCCCCCCHHHH
T ss_conf 964-633378630364555
No 307
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.90 E-value=0.018 Score=38.36 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=20.6
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 201078798888999999999614687
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKTA 50 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~ 50 (369)
.-+-||.||||+|+=|++|--.....+
T Consensus 32 vsilGpSGcGKSTLLriiAGL~~p~~G 58 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLEKPTSG 58 (248)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 999899978899999999687877775
No 308
>KOG4658 consensus
Probab=95.90 E-value=0.15 Score=31.55 Aligned_cols=175 Identities=19% Similarity=0.263 Sum_probs=94.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC-CC
Q ss_conf 28489999999999828767062010787988889999999996146877788665878999779999779877822-24
Q 537021.9.peg.4 2 IGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVV-EL 80 (369)
Q Consensus 2 iGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~-e~ 80 (369)
||++..++.+.+.+-.....+ .=++|..|+||||+|+-+= |-.. .-++|.|.+ ++
T Consensus 161 VG~e~~~ekl~~~L~~d~~~i-vgi~GMGGvGKTTL~~qi~---N~~~--------------------~v~~~Fd~~iWV 216 (889)
T KOG4658 161 VGLETMLEKLWNRLMEDDVGI-VGIYGMGGVGKTTLARQIF---NKFD--------------------EVGNHFDGVIWV 216 (889)
T ss_pred CCHHHHHHHHHHHHCCCCCCE-EEEECCCCCCHHHHHHHHH---HCCH--------------------HHCCCCCEEEEE
T ss_conf 468899999999840479968-9998897034999999984---1331--------------------223578749999
Q ss_pred CCCCC----------------C--CHH--HHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCC---
Q ss_conf 53322----------------3--345--556655544565420465237751156648001678999997212211---
Q 537021.9.peg.4 81 DAASH----------------T--SID--DVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHV--- 137 (369)
Q Consensus 81 ~~~s~----------------~--~id--~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~--- 137 (369)
--... . .-+ .+.++...+ +.-.++++=++++|+... +.+ ++-+.-|.+..
T Consensus 217 ~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i-~~~L~~krfllvLDDIW~--~~d----w~~I~~~~p~~~~g 289 (889)
T KOG4658 217 VVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKL-LNLLEGKRFLLVLDDIWE--EVD----WDKIGVPFPSRENG 289 (889)
T ss_pred EECCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH-HHHHCCCCEEEEEECCCC--CCC----HHHHCCCCCCCCCC
T ss_conf 97763108889999999844687100010288999999-998556855999825675--012----87718999875687
Q ss_pred -CEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC--C-CHHHHHHHHHCCCCCCCHHHHCCC
Q ss_conf -14665067543303567543332102454001356787643101345--6-256644565316764200110001
Q 537021.9.peg.4 138 -KFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIE--F-DPEAVAMIARASDGSARDGLSLLD 209 (369)
Q Consensus 138 -~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~--~-d~~~l~~ia~~s~GslR~Al~lLe 209 (369)
..+|+|.+ ..+-.-.-.++-.++.+-+++++.=..+.+++-.-... . =++..+.+|..+.|.+- |++.+.
T Consensus 290 ~KvvlTTRs-~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPL-Al~viG 363 (889)
T KOG4658 290 SKVVLTTRS-EEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPL-ALNVLG 363 (889)
T ss_pred EEEEEEECC-HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHH-HHHHHH
T ss_conf 289999645-87763324778730054168300299999873664444452079998999877289379-999999
No 309
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.90 E-value=0.017 Score=38.49 Aligned_cols=24 Identities=42% Similarity=0.661 Sum_probs=19.6
Q ss_pred EEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 062010787988889999999996
Q 537021.9.peg.4 22 QSYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 22 ha~lf~G~~G~GK~~~a~~~A~~l 45 (369)
..+.+.||.|+||||+.++++-.+
T Consensus 29 ei~~l~G~NGaGKTTLlk~i~Gl~ 52 (206)
T PRK13539 29 EALVLTGPNGSGKTTLLRLLAGLL 52 (206)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 499998999998999999995887
No 310
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.87 E-value=0.03 Score=36.70 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=18.8
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 62010787988889999999996
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l 45 (369)
-+-+.||.|+||+|+++.+...+
T Consensus 31 ~iaIvG~sGsGKSTLl~ll~gl~ 53 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999998999999982386
No 311
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.87 E-value=0.013 Score=39.34 Aligned_cols=116 Identities=17% Similarity=0.188 Sum_probs=55.8
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH---HHHHHC-----CCCCCCCCCCCCCCC-CHHHH-H
Q ss_conf 6201078798888999999999614687778866587899977---999977-----987782224533223-34555-6
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEH---CQAIIR-----GNHVDVVELDAASHT-SIDDV-R 92 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~---c~~i~~-----~~~~d~~e~~~~s~~-~id~i-r 92 (369)
-+-+.||.|+||+|+++.++..+....+... .+|..-+ -..+.. .+.|.++.-.-..|+ +--|- |
T Consensus 30 ~vaIvG~sGsGKSTLl~ll~gl~~p~~G~i~-----i~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~ti~eNiLSGGQkQR 104 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRPTSGRVR-----LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQR 104 (173)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEE-----ECCEECCCCCHHHHHCCEEEEECCCEECCCCHHHHCCCHHHHHH
T ss_conf 9999999998099999999666667999899-----99999332899898420899908883677758997676999999
Q ss_pred HHHHHHHHHHHCCCCCEEEEECHH-HCCCCHHHHHHHHHHHC-CCCCCEEEEECCCC
Q ss_conf 655544565420465237751156-64800167899999721-22111466506754
Q 537021.9.peg.4 93 EIIDQIYYKPISARFRVYIMDEVQ-MLSTAAFNGLLKTLEEP-PPHVKFIFATTEIR 147 (369)
Q Consensus 93 ~l~~~~~~~p~~~~~kv~iid~a~-~m~~~a~NaLLK~lEEP-p~~~~fil~t~~~~ 147 (369)
--+. +..-.+.+|+|+||+- .+-..+...+...+++- ..+...|++|++++
T Consensus 105 valA----Ral~~~p~ililDEpts~LD~~~e~~i~~~l~~l~~~~~Tvi~vtH~~~ 157 (173)
T cd03246 105 LGLA----RALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE 157 (173)
T ss_pred HHHH----HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 9999----9982799999996876689989999999999978648989999847999
No 312
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.86 E-value=0.0069 Score=41.42 Aligned_cols=106 Identities=16% Similarity=0.251 Sum_probs=53.5
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH------
Q ss_conf 62010787988889999999996146877788665878999779999779877822245332233455566555------
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIID------ 96 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~------ 96 (369)
-+.+.||.|+||||+.++++..+-...+....+ +.... ..-.++|-+.. ..+|+.+.
T Consensus 29 ~v~i~G~sGsGKSTLl~~l~Gl~~~~~G~i~~~-----~~~~i---~~v~Q~~~l~~---------~tl~e~l~~p~~~~ 91 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMP-----EGEDL---LFLPQRPYLPL---------GTLREQLIYPWDDV 91 (166)
T ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCEEEEC-----CCCCE---EEECCCCCCCC---------CCHHHHHHCCCCCC
T ss_conf 999995899988999999869876998679976-----99879---99856466588---------75999963615467
Q ss_pred -------HHHH-HHHCCCCCEEEEECHH-HCCCCHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf -------4456-5420465237751156-6480016789999972122111466506754
Q 537021.9.peg.4 97 -------QIYY-KPISARFRVYIMDEVQ-MLSTAAFNGLLKTLEEPPPHVKFIFATTEIR 147 (369)
Q Consensus 97 -------~~~~-~p~~~~~kv~iid~a~-~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~ 147 (369)
.+.+ +..-.+.+|+|+||+- .|-.++.+.+++.+.+.. +..|++|++++
T Consensus 92 LSGGqkQRvalARal~~~p~iliLDEpTs~LD~~~~~~l~~~l~~~~--~Tvi~VtH~~~ 149 (166)
T cd03223 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG--ITVISVGHRPS 149 (166)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCC--CEEEEEECCHH
T ss_conf 89999999999999964999999758533289999999999999779--98999943469
No 313
>PHA00350 putative assembly protein
Probab=95.85 E-value=0.016 Score=38.65 Aligned_cols=126 Identities=18% Similarity=0.299 Sum_probs=67.5
Q ss_pred EHHCCCCCCCHHHHHHHHH--HHHCCCCCCCCCCCCCCCCC-CHHHHHHHCCCCCC---CCCCCCCCCCCHHHHHHHHHH
Q ss_conf 2010787988889999999--99614687778866587899-97799997798778---222453322334555665554
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIA--RSLNYKTAHIDVPTVEFEGF-GEHCQAIIRGNHVD---VVELDAASHTSIDDVREIIDQ 97 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A--~~l~c~~~~~~~~~~~~c~~-c~~c~~i~~~~~~d---~~e~~~~s~~~id~ir~l~~~ 97 (369)
.+.+|++|+||+.-|-+|- -+|. +.+... | ..-|. -+.-.++.. .+|| ++.|+-.+..+++.++ .+
T Consensus 4 ~~~~G~pGSyKS~~av~~~ilPALk-~GR~Vi--T-Ni~gl~le~i~k~~~-~~p~~~~liri~~~~~~~~~~~~---~~ 75 (402)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALK-DGRKVI--T-NIPGLNLDVFEKVFG-EFPDTAELIRIVDRNLEDFESMN---RP 75 (402)
T ss_pred EEEECCCCCCCCEEEEHHHHHHHHH-CCCEEE--E-CCCCCCHHHHHHHCC-CCCCCHHEEEEECCCCCCHHHHH---CC
T ss_conf 9982599997660110867688985-699899--7-789988899998717-88360322787437864222220---20
Q ss_pred HHHHHHCCCCCEEEEECHHHC-CCCHHHHHHHHHH-----------HCC------------CCCCEEEEECCCCCCCHHH
Q ss_conf 456542046523775115664-8001678999997-----------212------------2111466506754330356
Q 537021.9.peg.4 98 IYYKPISARFRVYIMDEVQML-STAAFNGLLKTLE-----------EPP------------PHVKFIFATTEIRKIPITV 153 (369)
Q Consensus 98 ~~~~p~~~~~kv~iid~a~~m-~~~a~NaLLK~lE-----------EPp------------~~~~fil~t~~~~~ll~TI 153 (369)
..-+|. | -.|+|||||+. +...--.-+|++- +-| -+.=+||+|.++.+|-.-|
T Consensus 76 f~W~p~-g--aliviDE~q~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~HRh~~wDI~L~Tp~~~~i~~~i 152 (402)
T PHA00350 76 FSWRPR-G--ALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRHRHYNWDIILLTPNIRKIHSDI 152 (402)
T ss_pred CCCCCC-C--CEEEEECHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHH
T ss_conf 123677-7--7899963133246543300233212666420002678845699999973215866799678878985999
Q ss_pred HHHHHHH
Q ss_conf 7543332
Q 537021.9.peg.4 154 LSRCQRF 160 (369)
Q Consensus 154 ~SRcq~~ 160 (369)
++.++.-
T Consensus 153 r~~~e~~ 159 (402)
T PHA00350 153 RAMIEMT 159 (402)
T ss_pred HHHHHHH
T ss_conf 9999887
No 314
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.81 E-value=0.031 Score=36.65 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=8.9
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 889999999999953
Q 537021.9.peg.4 333 RPMEAVEMVLIRLAH 347 (369)
Q Consensus 333 np~L~lE~lLlkL~~ 347 (369)
-+|+++=.++++=..
T Consensus 477 rQRialARAll~~p~ 491 (585)
T PRK13657 477 RQRLAIARALLKDPP 491 (585)
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999999946989
No 315
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.79 E-value=0.064 Score=34.30 Aligned_cols=35 Identities=29% Similarity=0.476 Sum_probs=25.2
Q ss_pred HHHHHHCCCCCE-EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 999998287670-62010787988889999999996
Q 537021.9.peg.4 11 LTNAFKSGRIAQ-SYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 11 l~~~~~~~~~~h-a~lf~G~~G~GK~~~a~~~A~~l 45 (369)
|-+.+--|=+|- ..|+.|.||+||+|+..-.|..+
T Consensus 79 lDRVLGGGlV~GS~iLlgGePGIGKSTLlLQ~a~~l 114 (454)
T PRK11823 79 LDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAAL 114 (454)
T ss_pred HHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 652215872066489950799888999999999998
No 316
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.79 E-value=0.053 Score=34.87 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=19.2
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 20107879888899999999961
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLN 46 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~ 46 (369)
.|+.||+|+|||+++.-+|....
T Consensus 2 ~li~g~~g~GKttl~~~~~~~~~ 24 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 89998999989999999999987
No 317
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.78 E-value=0.056 Score=34.74 Aligned_cols=59 Identities=12% Similarity=0.086 Sum_probs=36.3
Q ss_pred CCCCCEEEEECHHHCCCC-HHHHHHHHHHH-CCCCCCEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 046523775115664800-16789999972-122111466506754330356754333210
Q 537021.9.peg.4 104 SARFRVYIMDEVQMLSTA-AFNGLLKTLEE-PPPHVKFIFATTEIRKIPITVLSRCQRFDL 162 (369)
Q Consensus 104 ~~~~kv~iid~a~~m~~~-a~NaLLK~lEE-Pp~~~~fil~t~~~~~ll~TI~SRcq~~~f 162 (369)
-.++++++||-+-+=..+ ....-|+.|.. +.-+++++|.++.-...+..|..+-+.+.+
T Consensus 424 l~~~~lvliDTaG~~~rd~~~~~~~~~l~~~~~~~~~Lvl~a~~~~~~l~~~~~~~~~~~~ 484 (557)
T PRK12727 424 LRDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRFAHAKP 484 (557)
T ss_pred HCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCC
T ss_conf 3699989994999884699999999987514776359999688998999999998537998
No 318
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=95.74 E-value=0.022 Score=37.74 Aligned_cols=125 Identities=22% Similarity=0.262 Sum_probs=69.2
Q ss_pred CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC-----CCCHHHHHH
Q ss_conf 767062010787988889999999996146877788665878999779999779877822245332-----233455566
Q 537021.9.peg.4 19 RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAAS-----HTSIDDVRE 93 (369)
Q Consensus 19 ~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s-----~~~id~ir~ 93 (369)
.=|-|+++.|+||.|||++++.+...+.- .+...+++ + -....||++.++.... ...-.+.+.
T Consensus 10 ~~Pkai~laG~pGAGKS~~~~~~~~~~~~----~~~v~In~----D----~~r~~~P~y~~l~~~~~~~~~~~~~~~a~~ 77 (191)
T pfam06414 10 ERPVAVLLGGQPGAGKTELARALLEELGG----GNVVRIDP----D----ELRTYHPDYDELQKADPKDASELTQPDASR 77 (191)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCC----CCCEEECC----H----HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 69879999579988889999999875378----99389713----5----878877747865540767789998999999
Q ss_pred HHHHHHHHHHCCCCCEEEEECHHHC-CCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 5554456542046523775115664-8001678999997212211146650675433035675433
Q 537021.9.peg.4 94 IIDQIYYKPISARFRVYIMDEVQML-STAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQ 158 (369)
Q Consensus 94 l~~~~~~~p~~~~~kv~iid~a~~m-~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq 158 (369)
+.+.+.-.-.++++- +|||.. | +.+..-.+.+.+.+-.-.|..+++++.++.=..-+..|-.
T Consensus 78 ~~~~~~~~a~~~r~n-~iiegT--~~~~~~~~~~~~~lk~~GY~v~v~~Va~~~e~S~~r~~~Ry~ 140 (191)
T pfam06414 78 WVEKLIDYAIERGYN-IILEGT--LRSPDVARKLARKLKAAGYEVEVYVVAVPPELSWLGVLDRYE 140 (191)
T ss_pred HHHHHHHHHHHCCCC-EEEECC--CCCHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHH
T ss_conf 999999999975999-898577--789799999999999789979999998899999999999998
No 319
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.72 E-value=0.036 Score=36.17 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=8.9
Q ss_pred CEEEEECHHHCCCCH
Q ss_conf 237751156648001
Q 537021.9.peg.4 108 RVYIMDEVQMLSTAA 122 (369)
Q Consensus 108 kv~iid~a~~m~~~a 122 (369)
++++.|++.....-.
T Consensus 97 ~~~v~dp~~g~~~l~ 111 (709)
T COG2274 97 KVVVLDPAKGIRRLS 111 (709)
T ss_pred EEEEEECCCCCEECC
T ss_conf 599981787719817
No 320
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.70 E-value=0.034 Score=36.33 Aligned_cols=28 Identities=32% Similarity=0.464 Sum_probs=21.6
Q ss_pred HHCCCCC--EEEHHCCCCCCCHHHHHHHHH
Q ss_conf 9828767--062010787988889999999
Q 537021.9.peg.4 15 FKSGRIA--QSYMLSGTRGIGKTTTARIIA 42 (369)
Q Consensus 15 ~~~~~~~--ha~lf~G~~G~GK~~~a~~~A 42 (369)
+-.|-+| +.||.+|+||+|||++|.-|.
T Consensus 16 iL~GGlp~g~~~LV~G~pGsGKTtla~QfL 45 (501)
T PRK09302 16 ITNGGLPKGRPTLVSGTAGTGKTLFALQFL 45 (501)
T ss_pred HHCCCCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 854898899779998389999999999999
No 321
>PRK13544 consensus
Probab=95.65 E-value=0.016 Score=38.66 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=19.3
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 62010787988889999999996
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l 45 (369)
-+-+.||.|+||||+-+++|..+
T Consensus 29 i~~l~G~NGsGKSTLl~~i~Gl~ 51 (208)
T PRK13544 29 LTLVIGNNGSGKTSLLRLLAGLI 51 (208)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999998999999995880
No 322
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.65 E-value=0.051 Score=35.02 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=20.7
Q ss_pred CCCC--EEEHHCCCCCCCHHHHHHHHHHH
Q ss_conf 8767--06201078798888999999999
Q 537021.9.peg.4 18 GRIA--QSYMLSGTRGIGKTTTARIIARS 44 (369)
Q Consensus 18 ~~~~--ha~lf~G~~G~GK~~~a~~~A~~ 44 (369)
|-+| .-..++||+|+|||++|.-+|..
T Consensus 14 GGip~G~ItEi~G~~gsGKT~l~lqla~~ 42 (226)
T cd01393 14 GGIPTGRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99888839999999999899999999999
No 323
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=95.64 E-value=0.24 Score=30.09 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=19.8
Q ss_pred CCCCCEEEHHCCCCCCCHHHHHHHHHHH
Q ss_conf 2876706201078798888999999999
Q 537021.9.peg.4 17 SGRIAQSYMLSGTRGIGKTTTARIIARS 44 (369)
Q Consensus 17 ~~~~~ha~lf~G~~G~GK~~~a~~~A~~ 44 (369)
.+-++| -+..||.|.|||++--.++..
T Consensus 485 v~DvGH-TlIiGpTGaGKTvll~fL~aQ 511 (852)
T PRK13891 485 VRDLGH-TFMFGPTGAGKSTHLGIIAAQ 511 (852)
T ss_pred CCCCCC-EEEECCCCCCHHHHHHHHHHH
T ss_conf 688664-078789999889999999999
No 324
>pfam08542 Rep_fac_C Replication factor C. This family includes several subunits of DNA replication factor C.
Probab=95.63 E-value=0.2 Score=30.65 Aligned_cols=88 Identities=8% Similarity=0.140 Sum_probs=68.4
Q ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 35677777888876301363346788765-43047621357877753489999997457412234499889999999986
Q 537021.9.peg.4 229 ALADRNRIMDLFGYLIKGDIINVLQEFSS-QYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSK 307 (369)
Q Consensus 229 g~~~~~~i~~Ll~ai~~~d~~~al~~l~~-l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~ 307 (369)
|.++.+.+.++++++.+++..++.+.+++ +.+.|+.+.+++..+...+...
T Consensus 1 g~p~p~~I~~il~~~~~~~f~~a~~~i~~~~~~~G~s~~Dii~~l~~~i~~~---------------------------- 52 (90)
T pfam08542 1 GVPPPEDIKEILESCLNGDFEEAYKTLRELLIEKGYSAEDIITQLHRVLKTL---------------------------- 52 (90)
T ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC----------------------------
T ss_conf 9889899999999998099999999999999985999999999999999873----------------------------
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 2998999999999999999830278889999999999
Q 537021.9.peg.4 308 EVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIR 344 (369)
Q Consensus 308 ~i~~~~L~~~lq~l~~a~~~Lk~n~np~L~lE~lLlk 344 (369)
.++...-..++..+.+++.+|-.+.+.++.+..++-+
T Consensus 53 ~~~~~~k~~il~~la~~e~rL~~G~~e~lQL~al~a~ 89 (90)
T pfam08542 53 DIPESLKLELLKELGEIEYRLSDGASEYIQLSALLAA 89 (90)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 8999999999999999999998279779899999860
No 325
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=95.63 E-value=0.06 Score=34.49 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.3
Q ss_pred EHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 2010787988889999999996
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l 45 (369)
.+|+|--|+||||+|-.+|.+|
T Consensus 3 i~~~GKGGVGKTT~AaalA~~l 24 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRL 24 (254)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9996898554899999999999
No 326
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.60 E-value=0.048 Score=35.22 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=21.7
Q ss_pred CCEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 67062010787988889999999996
Q 537021.9.peg.4 20 IAQSYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 20 ~~ha~lf~G~~G~GK~~~a~~~A~~l 45 (369)
-++-+++.|+||+|||+++.-+|..+
T Consensus 12 ~G~L~vi~a~~g~GKS~~~~~la~~~ 37 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENI 37 (242)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98189999689999999999999999
No 327
>TIGR01618 phage_P_loop phage nucleotide-binding protein; InterPro: IPR006505 These sequences represent an uncharacterised family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of these proteins is unknown..
Probab=95.60 E-value=0.005 Score=42.49 Aligned_cols=81 Identities=21% Similarity=0.467 Sum_probs=51.0
Q ss_pred CCC-EEEHHCCCCCCCHHHHHHHHH-HHHCCCCCCCCCCCCCCCCCCHHHHHHHCCC-CCCC--CCCCCCCCCCHHHHHH
Q ss_conf 767-062010787988889999999-9961468777886658789997799997798-7782--2245332233455566
Q 537021.9.peg.4 19 RIA-QSYMLSGTRGIGKTTTARIIA-RSLNYKTAHIDVPTVEFEGFGEHCQAIIRGN-HVDV--VELDAASHTSIDDVRE 93 (369)
Q Consensus 19 ~~~-ha~lf~G~~G~GK~~~a~~~A-~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~-~~d~--~e~~~~s~~~id~ir~ 93 (369)
|.+ ..||.+|.||.||||+++.|- +.| -=.|+...++..|. -.|+ .++|... . +.+
T Consensus 10 ~~~~~~~lIYG~~G~GKTS~~K~l~GktL--------------~l~~D~SSkVL~G~~nvdiim~~~d~~~--~---~~~ 70 (229)
T TIGR01618 10 RSEYFRYLIYGKPGLGKTSTIKYLPGKTL--------------VLSLDKSSKVLAGDENVDIIMADLDDEK--P---IQE 70 (229)
T ss_pred CCCCCEEEEECCCCCCCCCEEEECCCCEE--------------EEECCCCCCCCCCCCCCEEEEEEECCCC--C---HHH
T ss_conf 67663688875898872305664588789--------------8836786443468998338998606998--4---789
Q ss_pred HHHHHH-HHH-HCCCCCEEEEECHHHC
Q ss_conf 555445-654-2046523775115664
Q 537021.9.peg.4 94 IIDQIY-YKP-ISARFRVYIMDEVQML 118 (369)
Q Consensus 94 l~~~~~-~~p-~~~~~kv~iid~a~~m 118 (369)
+.++.. +.. ..-+|..++||..-.+
T Consensus 71 ~~e~~~~~~~~~~~~Y~niViDNis~l 97 (229)
T TIGR01618 71 MVEFYKELQNIQAEEYDNIVIDNISEL 97 (229)
T ss_pred HHHHHHHHHCCHHHCCCEEEEECHHHH
T ss_conf 999999973225345765898142789
No 328
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.59 E-value=0.07 Score=33.99 Aligned_cols=122 Identities=14% Similarity=0.155 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 48999999999982876706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4 4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA 83 (369)
Q Consensus 4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~ 83 (369)
|.+.+....+....+.-|--.-|+|..|.||+|+|.++++.|.-.-.... ..+ | + .+.+|=..|+=. .
T Consensus 6 ~~~~v~~~~r~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y--~LD--G--D---nvR~gL~~dLgF---s 73 (197)
T COG0529 6 HPHSVTKQEREALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVY--LLD--G--D---NVRHGLNRDLGF---S 73 (197)
T ss_pred CCCCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEE--EEC--C--H---HHHHCCCCCCCC---C
T ss_conf 63215888898872799859996468888787999999999997597589--855--7--4---676500578897---8
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf 223345556655544565420465237751156648001678999997212211146
Q 537021.9.peg.4 84 SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFI 140 (369)
Q Consensus 84 s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fi 140 (369)
..-.++.||.+.+-+.+..-.| +++|-.+=..-.+.-+--.+.+++.+=.-+|+
T Consensus 74 ~edR~eniRRvaevAkll~daG---~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV 127 (197)
T COG0529 74 REDRIENIRRVAEVAKLLADAG---LIVIVAFISPYREDRQMARELLGEGEFIEVYV 127 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHCC---EEEEEEEECCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf 6789999999999999998789---08999751730999999999727686289995
No 329
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.59 E-value=0.11 Score=32.69 Aligned_cols=135 Identities=18% Similarity=0.204 Sum_probs=68.2
Q ss_pred HHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC--CCCCCCCCC
Q ss_conf 999999998287670620107879888899999999961468777886658789997799997798778--222453322
Q 537021.9.peg.4 8 IKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVD--VVELDAASH 85 (369)
Q Consensus 8 ~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d--~~e~~~~s~ 85 (369)
+..|++.-.+.+-+. .++.|++|+||||+-+.+.. .......|+.... +..-.+.+ +.--|-+
T Consensus 2 ~~~~~~~k~~~~~~K-i~ilG~~~sGKTsll~~l~~----~~~~~~~pT~g~~--------~~~v~~~~~~~~lwD~~-- 66 (173)
T cd04155 2 LSLLRKLRKSSEEPR-ILILGLDNAGKTTILKQLAS----EDISHITPTQGFN--------IKTVQSDGFKLNVWDIG-- 66 (173)
T ss_pred HHHHHHHHCCCCCCE-EEEECCCCCCHHHHHHHHHC----CCCCCCCCCCCEE--------EEEEEECCEEEEEEECC--
T ss_conf 678877655687758-99997999988999999856----9986606811323--------79999899999998558--
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC-CCHHHHHHHHHHHCC-CCCCEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 3345556655544565420465237751156648-001678999997212-21114665067543303567543332102
Q 537021.9.peg.4 86 TSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS-TAAFNGLLKTLEEPP-PHVKFIFATTEIRKIPITVLSRCQRFDLH 163 (369)
Q Consensus 86 ~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~-~~a~NaLLK~lEEPp-~~~~fil~t~~~~~ll~TI~SRcq~~~f~ 163 (369)
|-+..|.+.... |+.. .-=||++|-.+.-+ .++..-|-+.+.++. .++-|++++|-.+. + .
T Consensus 67 -G~~~~~~~~~~y-~~~a--~~iI~VvD~td~~~~~~~~~~l~~~l~~~~~~~~PiLiv~NK~Dl-~------------~ 129 (173)
T cd04155 67 -GQRAIRPYWRNY-FENT--DCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDL-A------------T 129 (173)
T ss_pred -CCHHHHHHHHHH-CCCC--CEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC-C------------C
T ss_conf -751012689976-5556--379999966756889999999999974130069838999976667-7------------7
Q ss_pred CCCCHHHHHHH
Q ss_conf 45400135678
Q 537021.9.peg.4 164 RISIGDLIELF 174 (369)
Q Consensus 164 ~l~~~~i~~~L 174 (369)
..+.++|.+.|
T Consensus 130 a~~~~eI~~~l 140 (173)
T cd04155 130 AAPAEEIAEAL 140 (173)
T ss_pred CCCHHHHHHHH
T ss_conf 89999999985
No 330
>PRK10867 signal recognition particle protein; Provisional
Probab=95.58 E-value=0.15 Score=31.54 Aligned_cols=123 Identities=16% Similarity=0.217 Sum_probs=60.2
Q ss_pred CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH-----HHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 767062010787988889999999996146877788665878999779-----999779877822245332233455566
Q 537021.9.peg.4 19 RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHC-----QAIIRGNHVDVVELDAASHTSIDDVRE 93 (369)
Q Consensus 19 ~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c-----~~i~~~~~~d~~e~~~~s~~~id~ir~ 93 (369)
+-|.-++|.|-.|+||||++--||..+--.... .+..-+|.+-... +......-.+|+..+. +...++-+++
T Consensus 98 ~~p~VIm~vGLqGsGKTTT~aKLA~~lk~k~~k--~vllvaaDt~RpaA~eQL~~la~~~~v~~~~~~~-~~dp~~ia~~ 174 (453)
T PRK10867 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKK--KVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDV-GQKPVDIVNA 174 (453)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHHHHCCCCEECCCC-CCCHHHHHHH
T ss_conf 999699997468885185899999999973898--3798558877058999999999851980436788-9988999999
Q ss_pred HHHHHHHHHHCCCCCEEEEECHHHCCCCHH--HHHHHHHHH--CCCCCCEEEEECCCCCC
Q ss_conf 555445654204652377511566480016--789999972--12211146650675433
Q 537021.9.peg.4 94 IIDQIYYKPISARFRVYIMDEVQMLSTAAF--NGLLKTLEE--PPPHVKFIFATTEIRKI 149 (369)
Q Consensus 94 l~~~~~~~p~~~~~kv~iid~a~~m~~~a~--NaLLK~lEE--Pp~~~~fil~t~~~~~l 149 (369)
-++. .-..+|-|+|||-|-++..+.. +-| +-+.+ -|..++|++=+.--+.-
T Consensus 175 a~~~----ak~~~~DvvivDTAGRl~~d~~Lm~El-~~i~~~~~P~e~llV~Da~~GQ~a 229 (453)
T PRK10867 175 ALKE----AKLKFYDVLLVDTAGRLHVDEAMMDEI-KQVHASINPVETLFVVDAMTGQDA 229 (453)
T ss_pred HHHH----HHHCCCCEEEEECCCCHHCCHHHHHHH-HHHHHHHCCCCEEEEEECCCCHHH
T ss_conf 9999----997799999997876012108889999-999876378713797432235668
No 331
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.58 E-value=0.009 Score=40.56 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 84899999999998287670620107879888899999999961
Q 537021.9.peg.4 3 GQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLN 46 (369)
Q Consensus 3 Gq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~ 46 (369)
=|+..+..-.+.-..|+-|.-+-|+|.+|+||||+|+.+.+.|.
T Consensus 6 ~~~~~v~~~~r~~~~~~kg~viWlTGLSGSGKTTlA~~L~~~L~ 49 (198)
T PRK03846 6 WHQHPVTKAQREQLHGHKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred EECCCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 44788799999998689986999879999988999999999999
No 332
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=95.56 E-value=0.15 Score=31.65 Aligned_cols=121 Identities=18% Similarity=0.263 Sum_probs=62.8
Q ss_pred EHHCCCCCCCHHHHHHHHH-HHHCCCCCCCC-CCCCC---CCCCCHHHHHHHCCCCCCCCCCCCC-----CC---CCHHH
Q ss_conf 2010787988889999999-99614687778-86658---7899977999977987782224533-----22---33455
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIA-RSLNYKTAHID-VPTVE---FEGFGEHCQAIIRGNHVDVVELDAA-----SH---TSIDD 90 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A-~~l~c~~~~~~-~~~~~---~c~~c~~c~~i~~~~~~d~~e~~~~-----s~---~~id~ 90 (369)
.+++|+ |=||||.|.-+| +++ ....... ..-.+ ..|.-. .+..+.+.+++..+.. .+ -..+.
T Consensus 25 ~VYTGd-GKGKTTAAlGlalRA~-G~G~rV~ivQFlKg~~~~ge~~---~~~~~~~~~~~~~g~~~~~~~~~~~e~~~~a 99 (178)
T PRK07414 25 QVFTSS-QRNFFTSVMAQALRIA-GQGTPVLIVQFLKGGIQQGPDQ---PIQLGQNLDWVRCDLPRCLDTPHLDESENKA 99 (178)
T ss_pred EEEECC-CCCHHHHHHHHHHHHH-CCCCEEEEEEEEECCCCCCHHH---HHHHCCCCEEEECCCCCCCCCCCCCHHHHHH
T ss_conf 999579-9980899999999995-3998799999755897301689---9972689689974777546688888999999
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECHHH-C--CCCHHHHHHHHHHHCCCCCCEEEEECCC-CCC
Q ss_conf 566555445654204652377511566-4--8001678999997212211146650675-433
Q 537021.9.peg.4 91 VREIIDQIYYKPISARFRVYIMDEVQM-L--STAAFNGLLKTLEEPPPHVKFIFATTEI-RKI 149 (369)
Q Consensus 91 ir~l~~~~~~~p~~~~~kv~iid~a~~-m--~~~a~NaLLK~lEEPp~~~~fil~t~~~-~~l 149 (369)
+|+..+.+...-.+|.|-++|+||.-. + .-=.-..++++|+.-|+++=.||+..++ +.|
T Consensus 100 ~~~~~~~a~~~l~~g~~DlvVLDEi~~Al~~gll~~eeVi~~L~~rP~~~evVLTGR~ap~eL 162 (178)
T PRK07414 100 LQELWQYTQQVVDEGKYELVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESL 162 (178)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHH
T ss_conf 999999999998688988899703689987699259999999981899988999699999999
No 333
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=95.56 E-value=0.019 Score=38.25 Aligned_cols=189 Identities=22% Similarity=0.224 Sum_probs=98.8
Q ss_pred HHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC--HHHH
Q ss_conf 982876706201078798888999999999614687778866-5878999779999779877822245332233--4555
Q 537021.9.peg.4 15 FKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPT-VEFEGFGEHCQAIIRGNHVDVVELDAASHTS--IDDV 91 (369)
Q Consensus 15 ~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~-~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~--id~i 91 (369)
+...++| .++.|.+|+||--+||+|-..- + ..+|- .--|+.=+. ..+.+. ..-+ ..++ .+| ..-.
T Consensus 332 v~~~~~p--vll~GEtGtGKe~laraiH~~s--~---~~gpfvAvNCaAip~-~liesE-LFGy--~~Ga-fTga~~kG~ 399 (606)
T COG3284 332 VAATDLP--VLLQGETGTGKEVLARAIHQNS--E---AAGPFVAVNCAAIPE-ALIESE-LFGY--VAGA-FTGARRKGY 399 (606)
T ss_pred HHHCCCC--EEECCCCCHHHHHHHHHHHHCC--C---CCCCEEEEEECCCHH-HHHHHH-HHCC--CCCC-CCCCHHCCC
T ss_conf 7624787--6853876556899999998536--5---569837998503447-764677-7445--7656-433001066
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHH----CCCCC------CEEEEECCC-CCCCHHHHHHHH--
Q ss_conf 66555445654204652377511566480016789999972----12211------146650675-433035675433--
Q 537021.9.peg.4 92 REIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEE----PPPHV------KFIFATTEI-RKIPITVLSRCQ-- 158 (369)
Q Consensus 92 r~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEE----Pp~~~------~fil~t~~~-~~ll~TI~SRcq-- 158 (369)
+- ++.++.-...++||...|.-+.|-+||++|+| |=..+ ..|=+|+-+ ..+-..=+=|=+
T Consensus 400 ~g-------~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLy 472 (606)
T COG3284 400 KG-------KLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLY 472 (606)
T ss_pred CC-------CCEECCCCCCHHHHHHHCHHHHHHHHHHHHHHCCEECCCCCCEEEEEEEEECCCCCHHHHHHCCCCHHHHH
T ss_conf 55-------41015787608987611418999999999861825235885215779998346757999987597148788
Q ss_pred ------HHHCCCCCCH-HHHHHHHHHHHHCC---CCCCHHHHH-HHHHCCCCCCCHHHHCCCCCCCHHHCC-CCHH
Q ss_conf ------3210245400-13567876431013---456256644-565316764200110001110000001-2103
Q 537021.9.peg.4 159 ------RFDLHRISIG-DLIELFTKILQEES---IEFDPEAVA-MIARASDGSARDGLSLLDQAIARCNDK-IVTS 222 (369)
Q Consensus 159 ------~~~f~~l~~~-~i~~~L~~i~~~E~---i~~d~~~l~-~ia~~s~GslR~Al~lLeq~i~~~~~~-i~~e 222 (369)
.+.++|+..- +-...|.++..+|+ .+++++++. +++...-||+|.-.|+++.+.+.+++. +...
T Consensus 473 yrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~~g~~~~~ 548 (606)
T COG3284 473 YRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALSDGGRIRVS 548 (606)
T ss_pred HHHCCEEECCCCHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEECC
T ss_conf 8744715506861104665789999998726877568999999998578998289999999999870799735714
No 334
>KOG0477 consensus
Probab=95.55 E-value=0.036 Score=36.15 Aligned_cols=128 Identities=16% Similarity=0.241 Sum_probs=67.1
Q ss_pred CCCHHHHHHHHHHHHHCC---------CC---CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 928489999999999828---------76---706201078798888999999999614687778866587899977999
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSG---------RI---AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQA 68 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~---------~~---~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~ 68 (369)
|-||..|+..+.-++-.| |+ .| .|+.|.||+||+.+-+..+|.-. .... .-|+..+...
T Consensus 451 IyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDin-vLL~GDPGTaKSQFLKY~eK~s~----RAV~----tTGqGASavG 521 (854)
T KOG0477 451 IYGHEDVKRAVALALFGGVPKNPGGKHKVRGDIN-VLLLGDPGTAKSQFLKYAEKTSP----RAVF----TTGQGASAVG 521 (854)
T ss_pred HHCHHHHHHHHHHHHHCCCCCCCCCCCEECCCEE-EEEECCCCCCHHHHHHHHHHCCC----CEEE----ECCCCCCCCC
T ss_conf 3145899999999985687568898744514402-89846998228999999986275----3168----5067754333
Q ss_pred HHCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 9779--87782224533223345556655544565420465237751156648001678999997212211146650675
Q 537021.9.peg.4 69 IIRG--NHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEI 146 (369)
Q Consensus 69 i~~~--~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~ 146 (369)
+..- .||=. |+..=... .-.-++.-|++|||.|+||.+---+.---||-- . -+.
T Consensus 522 LTa~v~KdPvt--------------rEWTLEaG-ALVLADkGvClIDEFDKMndqDRtSIHEAMEQQ---S------ISI 577 (854)
T KOG0477 522 LTAYVRKDPVT--------------REWTLEAG-ALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQ---S------ISI 577 (854)
T ss_pred EEEEEEECCCC--------------CEEEECCC-EEEECCCCEEEEEHHHHHCCCCCCHHHHHHHHC---C------HHH
T ss_conf 26887517865--------------30365167-289726853774121120401101599998751---2------014
Q ss_pred CC--CCHHHHHHHHHHH
Q ss_conf 43--3035675433321
Q 537021.9.peg.4 147 RK--IPITVLSRCQRFD 161 (369)
Q Consensus 147 ~~--ll~TI~SRcq~~~ 161 (369)
+| |-.|++-||..+.
T Consensus 578 SKAGIVtsLqArctvIA 594 (854)
T KOG0477 578 SKAGIVTSLQARCTVIA 594 (854)
T ss_pred HHHHHHHHHHHHHHHHE
T ss_conf 46668998875544300
No 335
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=95.53 E-value=0.068 Score=34.11 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=18.9
Q ss_pred EEEHHCCCCCCCHHHHHHHHHH
Q ss_conf 0620107879888899999999
Q 537021.9.peg.4 22 QSYMLSGTRGIGKTTTARIIAR 43 (369)
Q Consensus 22 ha~lf~G~~G~GK~~~a~~~A~ 43 (369)
-.+|+.||||+|||++|.-|+.
T Consensus 20 s~~LI~G~pGsGKT~la~qfl~ 41 (231)
T pfam06745 20 RVVLITGGPGTGKTIFGLQFLY 41 (231)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 6999985897259999999999
No 336
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.53 E-value=0.035 Score=36.27 Aligned_cols=23 Identities=43% Similarity=0.580 Sum_probs=19.6
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 62010787988889999999996
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l 45 (369)
-+.+.||-|+||||+.++++..+
T Consensus 29 i~~l~G~NGaGKSTLlkli~Gl~ 51 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998899987999999997785
No 337
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.52 E-value=0.069 Score=34.06 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=18.4
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 62010787988889999999996
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l 45 (369)
-+-+.||.|+||||+.+.+...+
T Consensus 30 ~i~IvG~sGsGKSTLl~ll~gl~ 52 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999899982999999996676
No 338
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=95.51 E-value=0.015 Score=38.88 Aligned_cols=129 Identities=20% Similarity=0.197 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CC---CCCCHHHHHHHCCCCCCCC
Q ss_conf 8489999999999828767062010787988889999999996146877788665-87---8999779999779877822
Q 537021.9.peg.4 3 GQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV-EF---EGFGEHCQAIIRGNHVDVV 78 (369)
Q Consensus 3 Gq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~-~~---c~~c~~c~~i~~~~~~d~~ 78 (369)
.|....+ ++.++.+ -+..||+|+|||-+|.+.|..+.-. +..+.... .| .|.- ..+.-|+..+-.
T Consensus 8 ~Q~~~~~----~l~~~~i---v~~~GpAGtGKT~la~~~al~~l~~-~~~~kiii~Rp~v~~g~~---iGfLPG~~~eK~ 76 (205)
T pfam02562 8 GQKRYVE----AIRKNDI---VFGIGPAGTGKTYLAVAAAVDALKD-GKVKRIILTRPAVEAGEK---LGFLPGDLEEKV 76 (205)
T ss_pred HHHHHHH----HHHCCCE---EEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCC---CCCCCCCHHHHH
T ss_conf 8999999----9717980---7998999860999999999999971-894379997577125775---455889789999
Q ss_pred CC------CCCC-CCCHHHHHHHH-----HHHHHHHHCCC---CCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 24------5332-23345556655-----54456542046---5237751156648001678999997212211146650
Q 537021.9.peg.4 79 EL------DAAS-HTSIDDVREII-----DQIYYKPISAR---FRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFAT 143 (369)
Q Consensus 79 e~------~~~s-~~~id~ir~l~-----~~~~~~p~~~~---~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t 143 (369)
++ |.-+ -.+-+.++.+. +.....-.+|+ ..++|+|||..||.+..-.+| -.=..++.+|++.
T Consensus 77 ~p~~~p~~d~l~~~~~~~~~~~l~~~~~Ie~~pl~~iRGrTf~n~~iIvDEaQN~t~~~lk~il---TRiG~~SK~vi~G 153 (205)
T pfam02562 77 DPYLRPLYDALYDMLGAEKVEKLIERGVIEIAPLAYMRGRTLNDAFIILDEAQNTTPEQMKMFL---TRIGFNSKMVVTG 153 (205)
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHCCCEEECCHHHHCCCCCCCCEEEEECHHCCCHHHHHHHH---HHCCCCCEEEEEC
T ss_conf 9999999999998728999999997597566146765547625688999722139999999998---4217996899947
Q ss_pred CC
Q ss_conf 67
Q 537021.9.peg.4 144 TE 145 (369)
Q Consensus 144 ~~ 145 (369)
.-
T Consensus 154 D~ 155 (205)
T pfam02562 154 DI 155 (205)
T ss_pred CH
T ss_conf 86
No 339
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.50 E-value=0.051 Score=34.99 Aligned_cols=22 Identities=36% Similarity=0.733 Sum_probs=18.6
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 20107879888899999999961
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLN 46 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~ 46 (369)
.+.+|+||+||||++..++ .++
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg 24 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELG 24 (180)
T ss_pred EEEECCCCCCHHHHHHHHH-HHC
T ss_conf 7993799986687999999-829
No 340
>PRK10416 cell division protein FtsY; Provisional
Probab=95.49 E-value=0.11 Score=32.63 Aligned_cols=124 Identities=20% Similarity=0.268 Sum_probs=63.1
Q ss_pred CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH-----HHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 28767062010787988889999999996146877788665878999779-----9997798778222453322334555
Q 537021.9.peg.4 17 SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHC-----QAIIRGNHVDVVELDAASHTSIDDV 91 (369)
Q Consensus 17 ~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c-----~~i~~~~~~d~~e~~~~s~~~id~i 91 (369)
.++-|+.+||.|-.|+||||++--||+.+.-.. .....-+|.+-+.. +........+++.- +.+.|-.
T Consensus 291 ~~~~P~VIl~vGvNG~GKTTTigKLA~~~~~~g---kkVllaA~DTfRaAAieQL~~w~~r~~v~vi~~----~~g~Dpa 363 (499)
T PRK10416 291 EGKTPFVILMVGVNGVGKTTTIGKLARQFEQQG---KSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQ----HTGADSA 363 (499)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC---CCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEC----CCCCCHH
T ss_conf 899987999974787878989999999999779---953788406675689999999842457369836----8999979
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECHHHCCCCHH--HHH---HHHH----HHCCCCCCEEEEECCCCC
Q ss_conf 66555445654204652377511566480016--789---9999----721221114665067543
Q 537021.9.peg.4 92 REIIDQIYYKPISARFRVYIMDEVQMLSTAAF--NGL---LKTL----EEPPPHVKFIFATTEIRK 148 (369)
Q Consensus 92 r~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~--NaL---LK~l----EEPp~~~~fil~t~~~~~ 148 (369)
- +.-+.-......+|-|+|||-|-+|....- +-| -+++ +..|..++|++=++--+.
T Consensus 364 ~-V~~dai~~a~~~~~DvviiDTAGRl~~~~~LM~EL~ki~rvi~k~~~~aP~e~lLVlDa~tGQn 428 (499)
T PRK10416 364 S-VIFDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN 428 (499)
T ss_pred H-HHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHH
T ss_conf 9-9999999999729998998577643260999999999999997237899974899977876778
No 341
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=95.49 E-value=0.068 Score=34.09 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 899999999998287670620107879888899999999961
Q 537021.9.peg.4 5 KPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLN 46 (369)
Q Consensus 5 ~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~ 46 (369)
+...+.|........=+|-.=++||||+||+|+.-.|.+.+.
T Consensus 13 ~~~~~ll~~~~~~~g~a~~iGiTG~PGaGKStli~~l~~~~~ 54 (267)
T pfam03308 13 PEARELLRRLMPLTGRAHRVGITGVPGAGKSTLIEALGMELR 54 (267)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 779999999874359955998768998879999999999999
No 342
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=95.47 E-value=0.031 Score=36.61 Aligned_cols=120 Identities=20% Similarity=0.324 Sum_probs=63.0
Q ss_pred EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHC---CCCCCC----CCC-CC--CCCC-----
Q ss_conf 06201078798888999999999614687778866587899977999977---987782----224-53--3223-----
Q 537021.9.peg.4 22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIR---GNHVDV----VEL-DA--ASHT----- 86 (369)
Q Consensus 22 ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~---~~~~d~----~e~-~~--~s~~----- 86 (369)
-++=+-||-|+||+|+||.+-=...|.++..-. | | -.-++.+. |.|.-+ +|+ +| +-||
T Consensus 357 e~laIIGPSgSGKStLaR~~vG~W~~~~G~VRL---D--G--adl~qWD~e~lG~~iGYLPQdvELF~GTva~NIARF~e 429 (556)
T TIGR01842 357 EALAIIGPSGSGKSTLARILVGIWPPASGSVRL---D--G--ADLKQWDRETLGKHIGYLPQDVELFSGTVAENIARFGE 429 (556)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEE---E--H--HHHHCCCHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCC
T ss_conf 458887478652588987887210135653364---0--3--34402375365880154798505076767640244688
Q ss_pred -----------CHHHHHHHHHHHHH------------------------HHHCCCCCEEEEECHH-HCCCCHHHHHHHHH
Q ss_conf -----------34555665554456------------------------5420465237751156-64800167899999
Q 537021.9.peg.4 87 -----------SIDDVREIIDQIYY------------------------KPISARFRVYIMDEVQ-MLSTAAFNGLLKTL 130 (369)
Q Consensus 87 -----------~id~ir~l~~~~~~------------------------~p~~~~~kv~iid~a~-~m~~~a~NaLLK~l 130 (369)
+.-++.|++-.+-. +...|+.+++|+||-+ .|=.+.--||.+-|
T Consensus 430 n~d~~~iieAAklAGvHElIl~lP~GYDT~iG~~G~~LSGGQRQRIaLARAlyG~P~lvvLDEPNsNLD~~GE~AL~~Ai 509 (556)
T TIGR01842 430 NADPEKIIEAAKLAGVHELILRLPDGYDTDIGEGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAI 509 (556)
T ss_pred CCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 78878999999760303575169688544313777778614689999999871798378732889876617899999999
Q ss_pred HH-CCCCCCEEEEECCCCC
Q ss_conf 72-1221114665067543
Q 537021.9.peg.4 131 EE-PPPHVKFIFATTEIRK 148 (369)
Q Consensus 131 EE-Pp~~~~fil~t~~~~~ 148 (369)
-+ --.++.-|++|+-|.-
T Consensus 510 ~~lK~rg~tvv~itHRp~l 528 (556)
T TIGR01842 510 KALKARGITVVVITHRPSL 528 (556)
T ss_pred HHHHHCCCEEEEEECHHHH
T ss_conf 9998679728998410689
No 343
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.47 E-value=0.021 Score=37.84 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=20.3
Q ss_pred EEEHHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 062010787988889999999996146
Q 537021.9.peg.4 22 QSYMLSGTRGIGKTTTARIIARSLNYK 48 (369)
Q Consensus 22 ha~lf~G~~G~GK~~~a~~~A~~l~c~ 48 (369)
.-+-+.||.|+||+|+.+.++..+...
T Consensus 30 e~vaivG~sGsGKSTLl~ll~gl~~p~ 56 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRFYDPQ 56 (229)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 999999999980999999996686678
No 344
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.47 E-value=0.12 Score=32.34 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=19.7
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHH
Q ss_conf 706201078798888999999999
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARS 44 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~ 44 (369)
+.-++++||.|+||+|+++.+.+.
T Consensus 7 g~livisGPSG~GK~tl~~~L~~~ 30 (208)
T PRK00300 7 GLLIVLSAPSGAGKSTLVRALLER 30 (208)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 838999999988999999999972
No 345
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=95.39 E-value=0.03 Score=36.74 Aligned_cols=37 Identities=27% Similarity=0.396 Sum_probs=22.9
Q ss_pred HHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 9999999998287670620107879888899999999961
Q 537021.9.peg.4 7 MIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLN 46 (369)
Q Consensus 7 ~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~ 46 (369)
+...|+.+++.+. ..|++||.|+||||+.+++...++
T Consensus 128 ~~~~L~~~v~~~~---~ilIsG~TGSGKTT~l~all~~i~ 164 (283)
T pfam00437 128 IAEFLRQAVQARG---NILVSGGTGSGKTTLLYALLNEIN 164 (283)
T ss_pred HHHHHHHHHHCCC---EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9999999998197---599988999988999999998408
No 346
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.38 E-value=0.08 Score=33.59 Aligned_cols=121 Identities=19% Similarity=0.230 Sum_probs=64.2
Q ss_pred CEEEHHCCCCCCCHHHHHHHHH-HHH-CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC------------C
Q ss_conf 7062010787988889999999-996-1468777886658789997799997798778222453322------------3
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIA-RSL-NYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASH------------T 86 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A-~~l-~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~------------~ 86 (369)
+--..|.||.|+||||+-=-|| ++. ..........+ .|-+.|.|... .
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT------------------tDtYRIGA~EQLk~Ya~im~vp~~ 264 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT------------------TDTYRIGAVEQLKTYADIMGVPLE 264 (407)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE------------------ECCCHHHHHHHHHHHHHHHCCCEE
T ss_conf 85799989988758879999999997532576068997------------------144115289999999998699559
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHH-----CCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 3455566555445654204652377511566480016789999972-----12211146650675433035675433321
Q 537021.9.peg.4 87 SIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEE-----PPPHVKFIFATTEIRKIPITVLSRCQRFD 161 (369)
Q Consensus 87 ~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEE-----Pp~~~~fil~t~~~~~ll~TI~SRcq~~~ 161 (369)
=++.-+++.+.+.. -..+.++++|-|-+=..+.+ .+.-|+| ++-.+++.|.+|.-.+.+..|..+-..++
T Consensus 265 vv~~~~el~~ai~~---l~~~d~ILVDTaGrs~~D~~--~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~ 339 (407)
T COG1419 265 VVYSPKELAEAIEA---LRDCDVILVDTAGRSQYDKE--KIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFP 339 (407)
T ss_pred EECCHHHHHHHHHH---HHCCCEEEEECCCCCCCCHH--HHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCC
T ss_conf 96399999999998---53188899968998833789--99999999703566217999845764688999999724588
Q ss_pred CCC
Q ss_conf 024
Q 537021.9.peg.4 162 LHR 164 (369)
Q Consensus 162 f~~ 164 (369)
+..
T Consensus 340 i~~ 342 (407)
T COG1419 340 IDG 342 (407)
T ss_pred CCE
T ss_conf 661
No 347
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.37 E-value=0.045 Score=35.43 Aligned_cols=114 Identities=23% Similarity=0.221 Sum_probs=55.3
Q ss_pred EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH---HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 0620107879888899999999961468777886658789997---7999977987782224533223345556655544
Q 537021.9.peg.4 22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGE---HCQAIIRGNHVDVVELDAASHTSIDDVREIIDQI 98 (369)
Q Consensus 22 ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~---~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~ 98 (369)
.-+.+.||.|+||||+.++++-.+....+.. ...|.-. .-+..... .--+..+++--+-.+.=.|
T Consensus 26 e~~~i~G~nGaGKSTLl~~l~gl~~~~~G~i-----~~~g~~~~~~~~~~~~~~-i~~v~QLSgGqkqrv~iA~------ 93 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEI-----LIDGKDIAKLPLEELRRR-IGYVPQLSGGQRQRVALAR------ 93 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-----EECCEECCCCCHHHHHHC-CCCCCCCCHHHHHHHHHHH------
T ss_conf 7999987889998999999958847996289-----999999997999999940-6087668869999999999------
Q ss_pred HHHHHCCCCCEEEEECHH-HCCCCHHHHHHHHHHHCC-CCCCEEEEECCCCCCC
Q ss_conf 565420465237751156-648001678999997212-2111466506754330
Q 537021.9.peg.4 99 YYKPISARFRVYIMDEVQ-MLSTAAFNGLLKTLEEPP-PHVKFIFATTEIRKIP 150 (369)
Q Consensus 99 ~~~p~~~~~kv~iid~a~-~m~~~a~NaLLK~lEEPp-~~~~fil~t~~~~~ll 150 (369)
..-.+.+++|+||.- .|-..+...+.+.+.+-. .+..+|++|++++-+.
T Consensus 94 ---al~~~p~ililDEPtsgLD~~~~~~l~~~i~~l~~~g~tii~vtH~~~~~~ 144 (157)
T cd00267 94 ---ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred ---HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf ---997099999996987668999999999999999968999999908999999
No 348
>pfam01745 IPT Isopentenyl transferase. Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid.
Probab=95.36 E-value=0.032 Score=36.54 Aligned_cols=104 Identities=15% Similarity=0.220 Sum_probs=57.2
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 6201078798888999999999614687778866587899977999977987-782224533223345556655544565
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNH-VDVVELDAASHTSIDDVREIIDQIYYK 101 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~-~d~~e~~~~s~~~id~ir~l~~~~~~~ 101 (369)
.|+++||.|+|||.+|..+|+...++--.. ..-..|+.+.-|+- |..-|
T Consensus 3 l~~I~GpT~~GKT~~ai~lA~~~g~~iis~--------D~~Q~y~el~igs~rp~~~E---------------------- 52 (232)
T pfam01745 3 LYLIWGATCTGKTAEAIALAKETGWPVIVL--------DRVQCCSQLATGSGRPLPAE---------------------- 52 (232)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEE--------CHHHHHHCCCCCCCCCCHHH----------------------
T ss_conf 689978877771699999999959977962--------03443001136778999799----------------------
Q ss_pred HHCCCCCEEEEECH--H-HCCCCHHHHHHHH-HHHCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 42046523775115--6-6480016789999-9721221114665067543303567543
Q 537021.9.peg.4 102 PISARFRVYIMDEV--Q-MLSTAAFNGLLKT-LEEPPPHVKFIFATTEIRKIPITVLSRC 157 (369)
Q Consensus 102 p~~~~~kv~iid~a--~-~m~~~a~NaLLK~-lEEPp~~~~fil~t~~~~~ll~TI~SRc 157 (369)
.+|-.|||+-+-. + -++...+|.+|+. +.-.++.--+||=.-+.+-+.--++|+-
T Consensus 53 -l~gT~RiYL~~R~l~~Gii~a~eA~~~Li~~V~~~~~~~glILEGGSISLl~~ma~~~~ 111 (232)
T pfam01745 53 -LQGTRRIYLDNRPLSEGIIDAEEAHDRLIAEVTSHKDEGGVILEGGSISLLKRMAQSPY 111 (232)
T ss_pred -HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCHH
T ss_conf -65752698616734346648899999999999604667866872750999999975734
No 349
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.36 E-value=0.17 Score=31.17 Aligned_cols=126 Identities=19% Similarity=0.144 Sum_probs=63.5
Q ss_pred CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH-----HHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 67062010787988889999999996146877788665878999779-----9997798778222453322334555665
Q 537021.9.peg.4 20 IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHC-----QAIIRGNHVDVVELDAASHTSIDDVREI 94 (369)
Q Consensus 20 ~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c-----~~i~~~~~~d~~e~~~~s~~~id~ir~l 94 (369)
-|.-++|.|..|+||||++--||..+--. ...+..-+|.+-... +........+++.. ..+...++-+++-
T Consensus 96 kP~Vim~vGlqGsGKTTT~aKLA~~~kk~---g~kv~lvaaDt~RpaA~eQL~~la~~~~v~~~~~-~~~~dp~~i~~~a 171 (433)
T PRK00771 96 KPQTILLVGLQGSGKTTTAAKLARYFQKK---GLKVGVICADTWRPGAYEQLKQLCEKINVPFYGD-PKEKDAVKIVKEG 171 (433)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHH
T ss_conf 98589997378897899999999999977---9946785067883689999999998638873178-8999999999999
Q ss_pred HHHHHHHHHCCCCCEEEEECHHHCCCCHH--HHHHHHHHH-CCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 55445654204652377511566480016--789999972-12211146650675433035675
Q 537021.9.peg.4 95 IDQIYYKPISARFRVYIMDEVQMLSTAAF--NGLLKTLEE-PPPHVKFIFATTEIRKIPITVLS 155 (369)
Q Consensus 95 ~~~~~~~p~~~~~kv~iid~a~~m~~~a~--NaLLK~lEE-Pp~~~~fil~t~~~~~ll~TI~S 155 (369)
++.+ .+|-|+|||-|-++..+.. +-|-+.-+- -|..++|++=+.--+.-....++
T Consensus 172 ~~~~------k~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~GQ~a~~~a~~ 229 (433)
T PRK00771 172 LEKL------KKVDVIIVDTAGRHKLEKDLIEEMKQIKEITKPDEVILVIDATIGQQASEQAKA 229 (433)
T ss_pred HHHH------CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH
T ss_conf 9984------569889997765210409999999999877579768998654422678999999
No 350
>pfam01057 Parvo_NS1 Parvovirus non-structural protein NS1. This family also contains the NS2 protein. Parvoviruses encode two non-structural proteins, NS1 and NS2. The mRNA for NS2 contains the coding sequence for the first 87 amino acids of NS1, then by an alternative splicing mechanism mRNA from a different reading frame, encoding the last 78 amino acids, makes up the full length of the NS2 mRNA. NS1, is the major non-structural protein. It is essential for DNA replication. It is an 83-kDa nuclear phosphoprotein. It has DNA helicase and ATPase activity.
Probab=95.32 E-value=0.087 Score=33.29 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.7
Q ss_pred EEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 062010787988889999999996
Q 537021.9.peg.4 22 QSYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 22 ha~lf~G~~G~GK~~~a~~~A~~l 45 (369)
....|+||+.+||+-+|.++|+++
T Consensus 114 N~i~~~Gp~~TGks~la~ai~~~~ 137 (271)
T pfam01057 114 NTVWFYGPASTGKTNLAQAIAHAV 137 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 569998898767899999999868
No 351
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=95.32 E-value=0.063 Score=34.33 Aligned_cols=131 Identities=17% Similarity=0.206 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHC-----CCCC-CC
Q ss_conf 48999999999982876706201078798888999999999614687778866587899977999977-----9877-82
Q 537021.9.peg.4 4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIR-----GNHV-DV 77 (369)
Q Consensus 4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~-----~~~~-d~ 77 (369)
|+.+++.+.+..++++ --++.-|+|.|||.+|...++.+.-. +.-.|-.-..+.+..+ ...+ ++
T Consensus 41 Q~~al~a~~~~~~~~~---~gvivlpTGaGKT~va~~~~~~~~~~-------~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~ 110 (442)
T COG1061 41 QEEALDALVKNRRTER---RGVIVLPTGAGKTVVAAEAIAELKRS-------TLVLVPTKELLDQWAEALKKFLLLNDEI 110 (442)
T ss_pred HHHHHHHHHHHCCCCC---CEEEEECCCCCHHHHHHHHHHHHCCC-------EEEEECCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9999999996222578---67999679998899999999982698-------8999782999999999999734886766
Q ss_pred CCCCCC------CCCCHHHHHHHHHHHHHHHHCC-CCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 224533------2233455566555445654204-65237751156648001678999997212211146650675
Q 537021.9.peg.4 78 VELDAA------SHTSIDDVREIIDQIYYKPISA-RFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEI 146 (369)
Q Consensus 78 ~e~~~~------s~~~id~ir~l~~~~~~~p~~~-~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~ 146 (369)
-++.+. ..+-|..+.-+...-.+....+ +|-.+|+||||.+....+..++..+..|-+ ++=|++|-+
T Consensus 111 g~~~~~~~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~~--~LGLTATp~ 184 (442)
T COG1061 111 GIYGGGEKELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAYP--RLGLTATPE 184 (442)
T ss_pred CEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCE--EEEEECCCC
T ss_conf 03368723357774899983897641555540356667599975245784779999997510310--467714872
No 352
>pfam01580 FtsK_SpoIIIE FtsK/SpoIIIE family. FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Probab=95.29 E-value=0.093 Score=33.09 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=22.1
Q ss_pred CCCEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 7670620107879888899999999961
Q 537021.9.peg.4 19 RIAQSYMLSGTRGIGKTTTARIIARSLN 46 (369)
Q Consensus 19 ~~~ha~lf~G~~G~GK~~~a~~~A~~l~ 46 (369)
..|| +|+.|.+|.|||++.+.+..++.
T Consensus 37 ~~pH-~Lv~G~tGsGKS~~l~~li~sl~ 63 (202)
T pfam01580 37 KMPH-LLIAGATGSGKSTFLNTLILSLA 63 (202)
T ss_pred CCCC-EEEECCCCCCCCHHHHHHHHHHH
T ss_conf 6886-89965899980099999999998
No 353
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.25 E-value=0.065 Score=34.24 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=18.4
Q ss_pred HCCCCCCCHHHHHHHHHHHHC
Q ss_conf 107879888899999999961
Q 537021.9.peg.4 26 LSGTRGIGKTTTARIIARSLN 46 (369)
Q Consensus 26 f~G~~G~GK~~~a~~~A~~l~ 46 (369)
++||||.||+|+--.+.+.+.
T Consensus 4 itG~pGaGKStLi~~l~~~~~ 24 (148)
T cd03114 4 ITGVPGAGKSTLIDALITALR 24 (148)
T ss_pred ECCCCCCCHHHHHHHHHHHHH
T ss_conf 258997878999999999999
No 354
>pfam05272 VirE Virulence-associated protein E. This family contains several bacterial virulence-associated protein E like proteins.
Probab=95.21 E-value=0.056 Score=34.69 Aligned_cols=115 Identities=17% Similarity=0.265 Sum_probs=61.1
Q ss_pred HHHHCC-CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 999828-7670620107879888899999999961468777886658789997799997798778222453322334555
Q 537021.9.peg.4 13 NAFKSG-RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDV 91 (369)
Q Consensus 13 ~~~~~~-~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~i 91 (369)
++..-| +..+..+|.|+-|+||+|+.+.|+....+..... + ..-+.-..+...-...+=|+++.++..++.+
T Consensus 43 R~~~pG~k~d~vlvL~G~QG~gKStf~~~L~~~~~~d~~~~------~-~~kD~~~~l~~~wi~el~El~~~~k~~~~~l 115 (198)
T pfam05272 43 RVYEPGCKFDHVLILQGAQGSGKSTFLKKLGGEWFTDSIRS------F-EGKDAYEKLQGVWIVEIAELDGFSKAEVEAI 115 (198)
T ss_pred HHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCC------C-CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 99778976776789988986789999999737751565557------6-7738999999878732598751365329999
Q ss_pred HHHHHHH--HHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 6655544--5654204652377511566480016789999972122111466506754330356754
Q 537021.9.peg.4 92 REIIDQI--YYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSR 156 (369)
Q Consensus 92 r~l~~~~--~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SR 156 (369)
+.++..- .+++.-| +..+..|.+++||-+||+.+-|-..==+|
T Consensus 116 K~fls~~~d~~R~pY~----------------------~~~~~~pR~~vfigTtN~~~~L~D~TGnR 160 (198)
T pfam05272 116 KAFITRTVDSFRAPYG----------------------RRAESFPRQCVFVGTTNRDEFLKDPTGNR 160 (198)
T ss_pred HHHHCCHHHCCHHCCC----------------------CCCEECCEEEEEEEECCCCCCCCCCCCCE
T ss_conf 9984541312310223----------------------56400654799999638876557999981
No 355
>PRK06921 hypothetical protein; Provisional
Probab=95.20 E-value=0.036 Score=36.16 Aligned_cols=40 Identities=28% Similarity=0.259 Sum_probs=27.6
Q ss_pred HHHHHHHHHH-CCCCCEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 9999999998-287670620107879888899999999961
Q 537021.9.peg.4 7 MIKTLTNAFK-SGRIAQSYMLSGTRGIGKTTTARIIARSLN 46 (369)
Q Consensus 7 ~~~~l~~~~~-~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~ 46 (369)
+++...++.. .+.=.+.++|.|++|+|||-+|-+.|+.|+
T Consensus 101 a~eY~~~F~~i~~~~~~~l~f~G~~G~GKThLa~aIa~~Ll 141 (265)
T PRK06921 101 AVEYVKDFEKIQGCRKNSIALLGQPGSGKTHLLTAAANELM 141 (265)
T ss_pred HHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99999977876077766279972898988999999999999
No 356
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=95.19 E-value=0.14 Score=31.85 Aligned_cols=199 Identities=20% Similarity=0.263 Sum_probs=102.9
Q ss_pred CCCHHHHHH-HHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHHCCCCCCCC
Q ss_conf 928489999-999999828767062010787988889999999996146877788665-878999779999779877822
Q 537021.9.peg.4 1 MIGQKPMIK-TLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV-EFEGFGEHCQAIIRGNHVDVV 78 (369)
Q Consensus 1 iiGq~~~~~-~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~-~~c~~c~~c~~i~~~~~~d~~ 78 (369)
|||...... .++.+-+--+-+-..|+.|..|+||-.+|+..- |+.. ..++|-+ --|+--+. ..+.+.=| - +
T Consensus 247 Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH---~~S~-R~~~PFIaiNCaAiPe-~LlESELF-G-y 319 (560)
T COG3829 247 IIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIH---NLSP-RANGPFIAINCAAIPE-TLLESELF-G-Y 319 (560)
T ss_pred HCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---HCCC-CCCCCEEEEECCCCCH-HHHHHHHH-C-C
T ss_conf 2058999999999998633899828995378866899999987---4484-3479807876433888-88888872-7-6
Q ss_pred C---CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC-----------CCCCCEEEEEC
Q ss_conf 2---453322334555665554456542046523775115664800167899999721-----------22111466506
Q 537021.9.peg.4 79 E---LDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP-----------PPHVKFIFATT 144 (369)
Q Consensus 79 e---~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP-----------p~~~~fil~t~ 144 (369)
| ..||++.|.- -+.+ .+..=-+++||.-.|+..=|-.||+.|+|- |-.+..|=+|+
T Consensus 320 e~GAFTGA~~~GK~---GlfE-------~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN 389 (560)
T COG3829 320 EKGAFTGASKGGKP---GLFE-------LANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATN 389 (560)
T ss_pred CCCCCCCCCCCCCC---CCEE-------ECCCCEEEEHHHCCCCHHHHHHHHHHHHHCEEEECCCCCCEEEEEEEEECCC
T ss_conf 77642464457997---6054-------4169837712320399899999999875353785378875356789994257
Q ss_pred C-CCCCCHHHHHHH------HHH--HCCCCC--CHHHHH----HHHHHHHHCC--CC-CCHHHHHHH-HHCCCCCCCHHH
Q ss_conf 7-543303567543------332--102454--001356----7876431013--45-625664456-531676420011
Q 537021.9.peg.4 145 E-IRKIPITVLSRC------QRF--DLHRIS--IGDLIE----LFTKILQEES--IE-FDPEAVAMI-ARASDGSARDGL 205 (369)
Q Consensus 145 ~-~~~ll~TI~SRc------q~~--~f~~l~--~~~i~~----~L~~i~~~E~--i~-~d~~~l~~i-a~~s~GslR~Al 205 (369)
. +.+.+..=+=|- .++ .++|+- +++|.. +|.+.....+ ++ +.++++..+ ...+-||+|.--
T Consensus 390 ~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELe 469 (560)
T COG3829 390 RNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELE 469 (560)
T ss_pred CCHHHHHHCCCCHHHHEEEECEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHH
T ss_conf 58999986396165530030401114777233820189999999999998728876668999999998689996099999
Q ss_pred HCCCCCCCHHH
Q ss_conf 00011100000
Q 537021.9.peg.4 206 SLLDQAIARCN 216 (369)
Q Consensus 206 ~lLeq~i~~~~ 216 (369)
|++|+++.+.+
T Consensus 470 NviER~v~~~~ 480 (560)
T COG3829 470 NVIERAVNLVE 480 (560)
T ss_pred HHHHHHHHCCC
T ss_conf 99999981068
No 357
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=95.18 E-value=0.1 Score=32.81 Aligned_cols=138 Identities=15% Similarity=0.202 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH----HHHHHHC------CC
Q ss_conf 4899999999998287670620107879888899999999961468777886658789997----7999977------98
Q 537021.9.peg.4 4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGE----HCQAIIR------GN 73 (369)
Q Consensus 4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~----~c~~i~~------~~ 73 (369)
|..+++.+..++..|+ .. .|+.=..|+|||.+|..+...|.-....- .+.=.|..-. ....+.. .+
T Consensus 421 Q~~AI~~v~~a~~~~~-rr-aLl~MATGTGKTrtaial~~rLlk~~~~k--RILFLvDR~~L~~QA~~~F~~~~~~~~~~ 496 (1126)
T PRK11448 421 QEDAIQAVEKALANGQ-RE-ILLAMATGTGKTRTAIALMYRLLKAKRFK--RILFLVDRRALGEQALDAFKDTKIEGNQT 496 (1126)
T ss_pred HHHHHHHHHHHHHCCC-CC-EEEEECCCCCHHHHHHHHHHHHHHCCCCC--EEEEECCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9999999999998098-54-68872488858989999999999658767--25798565899999999875434545666
Q ss_pred CCCCCCC--------CCCCCCCHHHHHHHHHHHHH-----HHHCCCCCEEEEECHHH-------CCC---------CHHH
Q ss_conf 7782224--------53322334555665554456-----54204652377511566-------480---------0167
Q 537021.9.peg.4 74 HVDVVEL--------DAASHTSIDDVREIIDQIYY-----KPISARFRVYIMDEVQM-------LST---------AAFN 124 (369)
Q Consensus 74 ~~d~~e~--------~~~s~~~id~ir~l~~~~~~-----~p~~~~~kv~iid~a~~-------m~~---------~a~N 124 (369)
++++..+ +..+++-|-.+..++..+.+ .+.-|-|-.|||||||+ |+. +=.+
T Consensus 497 ~~~~~~v~~l~~~~~~~~~rv~isT~q~m~~~i~~~~~~~~~~~~~FDlIIiDEaHRgy~ld~em~e~e~~~rd~~s~~s 576 (1126)
T PRK11448 497 FASIYDIKGLTDKFPEDETKVHVATVQSMVKRILQSDDSEPPPVGQYDCIVVDEAHRGYTLDKEMTEGELQFRDQLDYVS 576 (1126)
T ss_pred CCHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHCCCCHHHHHH
T ss_conf 40022001025678787771999730789987523576779999851379897787887433231100010232024777
Q ss_pred HHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 89999972122111466506754
Q 537021.9.peg.4 125 GLLKTLEEPPPHVKFIFATTEIR 147 (369)
Q Consensus 125 aLLK~lEEPp~~~~fil~t~~~~ 147 (369)
....++|-. . .+.|-.|.-|.
T Consensus 577 kyr~IldYF-D-A~~iGLTATP~ 597 (1126)
T PRK11448 577 KYRRVLDYF-D-AVKIGLTATPA 597 (1126)
T ss_pred HHHHHHHHH-H-HHHHCCCCCCC
T ss_conf 899998762-1-55404767999
No 358
>pfam09115 DNApol3-delta_C DNA polymerase III, delta subunit, C terminal. Members of this family, which are predominantly found in prokaryotic DNA polymerase III, assume an alpha helical structure, with a core of five alpha helices, and an additional small helix. They are essential for the formation of the polymerase clamp loader.
Probab=95.17 E-value=0.33 Score=29.00 Aligned_cols=104 Identities=13% Similarity=0.076 Sum_probs=79.4
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHH
Q ss_conf 78888763013633467887654304762135787775348999999745741223449988999999998629989999
Q 537021.9.peg.4 236 IMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLS 315 (369)
Q Consensus 236 i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~ 315 (369)
...+..++.++|.-..+..++ ..+...-+..+..++-|....+. +.....++.|....+..+|..++.+.|.
T Consensus 12 ~~~l~~~l~~~d~l~ll~~l~-----~~~~~~~L~WL~~lL~DalK~q~---g~~~~~vn~D~~~li~~lA~~~s~~~L~ 83 (119)
T pfam09115 12 CRAFWNFLKSPDPLSLLPLLN-----KEDALQRLHWLWSLLLDALKWQQ---GVSKFLINQDQIPLIQQLAERLSSEKLL 83 (119)
T ss_pred HHHHHHHHCCCCHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHH---CCCHHHCCHHHHHHHHHHHHHCCHHHHH
T ss_conf 999999982799999978857-----22167889999999999999983---7644014677899999999888999999
Q ss_pred HHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHH
Q ss_conf 9999999999983027--8889999999999953
Q 537021.9.peg.4 316 RFWQMILKGISEIEGF--SRPMEAVEMVLIRLAH 347 (369)
Q Consensus 316 ~~lq~l~~a~~~Lk~n--~np~L~lE~lLlkL~~ 347 (369)
..++.+..++.++... .|..+.+.--|++...
T Consensus 84 ~~~~~~~~~r~qL~~~~glN~ELlL~~~Ll~we~ 117 (119)
T pfam09115 84 AQLQKLLHLREQLQSVPGLNRELLLTEWLLRWEE 117 (119)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 9999999999998638874799999999999987
No 359
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.14 E-value=0.015 Score=39.02 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=22.4
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 20107879888899999999961468
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKT 49 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~ 49 (369)
++|.||||+||+|.|+.+|+.+++.+
T Consensus 2 i~l~G~PGsGKgTqa~~La~~~~~~~ 27 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPH 27 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEE
T ss_conf 89989999987999999999979846
No 360
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.09 E-value=0.061 Score=34.42 Aligned_cols=23 Identities=43% Similarity=0.618 Sum_probs=18.3
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 62010787988889999999996
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l 45 (369)
-+-+.||.|+||||+.+.++-.+
T Consensus 28 i~~iiG~nGaGKSTLl~~i~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998899998999999995685
No 361
>TIGR00630 uvra excinuclease ABC, A subunit; InterPro: IPR004602 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products . The UvrC protein contain 4 conserved regions: a central region which interact with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0009380 excinuclease repair complex.
Probab=95.07 E-value=0.027 Score=37.11 Aligned_cols=99 Identities=22% Similarity=0.325 Sum_probs=59.3
Q ss_pred EEHHCCCCCCCHHHHHH--HHHH----HHCCCCCCCCCCCCCCCCCCHHHHHHHCC-CCCCCCCCCCCCC-CCHHH----
Q ss_conf 62010787988889999--9999----96146877788665878999779999779-8778222453322-33455----
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTAR--IIAR----SLNYKTAHIDVPTVEFEGFGEHCQAIIRG-NHVDVVELDAASH-TSIDD---- 90 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~--~~A~----~l~c~~~~~~~~~~~~c~~c~~c~~i~~~-~~~d~~e~~~~s~-~~id~---- 90 (369)
-.+|+|.-|+||+|+|. +||. ++ ++-..+ .|++... .-|||=.|+|-|- ++|||
T Consensus 24 lVViTG~SGSGKSSLAFDTiYAEGQRRYv--ESLSaY------------ARQFLg~~~KPdVD~IEGLSPAIsIdQKtt~ 89 (956)
T TIGR00630 24 LVVITGLSGSGKSSLAFDTIYAEGQRRYV--ESLSAY------------ARQFLGVMDKPDVDSIEGLSPAISIDQKTTS 89 (956)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCHHH--HHHHHH------------HHHHCCCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf 69997456886154565467661450021--001589------------9986478747783501488761785125247
Q ss_pred ---------HHHHHHHHH---------HHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf ---------566555445---------6542046523775115664800167899999721221114665067
Q 537021.9.peg.4 91 ---------VREIIDQIY---------YKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTE 145 (369)
Q Consensus 91 ---------ir~l~~~~~---------~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~ 145 (369)
|=||-+.++ |.|..++ .++.++.+-..-.+-+-|+++.++|.+.=
T Consensus 90 ~NPRSTVGTvTEIyDYLRLLfArvG~p~CP~~~~----------~i~~qt~~~Ivd~i~~~~~g~r~~lLAP~ 152 (956)
T TIGR00630 90 HNPRSTVGTVTEIYDYLRLLFARVGTPYCPECGR----------PIEEQTVSQIVDQILALPEGTRVILLAPI 152 (956)
T ss_pred CCCCCCCCCEEEHHHHHHHHHHHCCCCCCCCCCC----------HHHHCCHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 8885544432103677899998368878887773----------26433878999998624899658996573
No 362
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.04 E-value=0.091 Score=33.17 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=18.8
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 62010787988889999999996
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l 45 (369)
-+-+.||.|+||+|+.++++..+
T Consensus 29 ~~~IvG~sGsGKSTLl~~l~g~~ 51 (218)
T cd03290 29 LTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999980999999985556
No 363
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.02 E-value=0.046 Score=35.32 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=17.8
Q ss_pred EEHHCCCCCCCHHHHHHHHHHH
Q ss_conf 6201078798888999999999
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARS 44 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~ 44 (369)
-+-+.||.|+||||+.++++..
T Consensus 38 ~v~ivG~sGsGKSTLl~~i~Gl 59 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999999985899999999669
No 364
>COG1485 Predicted ATPase [General function prediction only]
Probab=95.01 E-value=0.14 Score=31.74 Aligned_cols=126 Identities=19% Similarity=0.144 Sum_probs=62.9
Q ss_pred CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 67062010787988889999999996146877788665878999779999779877822245332233455566555445
Q 537021.9.peg.4 20 IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIY 99 (369)
Q Consensus 20 ~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~ 99 (369)
.+..+-++|+-|.|||-+--.|=.+| .... -..+.- ..+....|-+++++-+.+ |-+..+.
T Consensus 64 ~~~GlYl~GgVGrGKT~LMD~Fy~~l-----p~~~-----k~R~HF-h~FM~~vH~~l~~l~g~~----dpl~~iA---- 124 (367)
T COG1485 64 PVRGLYLWGGVGRGKTMLMDLFYESL-----PGER-----KRRLHF-HRFMARVHQRLHTLQGQT----DPLPPIA---- 124 (367)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC-----CCCC-----CCCCCH-HHHHHHHHHHHHHHCCCC----CCCHHHH----
T ss_conf 88358888997864999999998658-----7645-----665507-799999999999971888----8657999----
Q ss_pred HHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECC--CCCC-------------CHHHHHHHHHHHCCC
Q ss_conf 6542046523775115664800167899999721221114665067--5433-------------035675433321024
Q 537021.9.peg.4 100 YKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTE--IRKI-------------PITVLSRCQRFDLHR 164 (369)
Q Consensus 100 ~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~--~~~l-------------l~TI~SRcq~~~f~~ 164 (369)
.-+-+.++|.-|||.+-=-..-+=-|-..+|+-=++=+.+.+|+| |+.| +.+|.+||+++++..
T Consensus 125 -~~~~~~~~vLCfDEF~VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY~dGlqR~~FLP~I~li~~~~~v~~vD~ 203 (367)
T COG1485 125 -DELAAETRVLCFDEFEVTDIADAMILGRLLEALFARGVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSHFEVVNVDG 203 (367)
T ss_pred -HHHHHCCCEEEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHEEEEEECC
T ss_conf -9998417889863036237578899999999999779689995899967854460257763779999987547997058
Q ss_pred C
Q ss_conf 5
Q 537021.9.peg.4 165 I 165 (369)
Q Consensus 165 l 165 (369)
.
T Consensus 204 ~ 204 (367)
T COG1485 204 P 204 (367)
T ss_pred C
T ss_conf 7
No 365
>PRK13764 ATPase; Provisional
Probab=94.98 E-value=0.034 Score=36.34 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=25.6
Q ss_pred HHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 999998287670620107879888899999999961
Q 537021.9.peg.4 11 LTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLN 46 (369)
Q Consensus 11 l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~ 46 (369)
|..-+... +...|.+||||.||+|+|.++|..++
T Consensus 251 l~~Rl~~~--a~GilIaG~PGaGKsTfaqalA~~~~ 284 (605)
T PRK13764 251 LKERLEER--AEGILIAGAPGAGKSTFAQALAEFYA 284 (605)
T ss_pred HHHHHHHC--CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988733--66499977999977899999999998
No 366
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.98 E-value=0.081 Score=33.53 Aligned_cols=24 Identities=38% Similarity=0.563 Sum_probs=19.2
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHH
Q ss_conf 706201078798888999999999
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARS 44 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~ 44 (369)
+..+-+.||.|+||||+.++++--
T Consensus 26 Ge~~~l~G~NGsGKSTLlk~i~Gl 49 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 959999999999999999999667
No 367
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.97 E-value=0.23 Score=30.25 Aligned_cols=27 Identities=26% Similarity=0.317 Sum_probs=21.7
Q ss_pred CCCEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 767062010787988889999999996
Q 537021.9.peg.4 19 RIAQSYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 19 ~~~ha~lf~G~~G~GK~~~a~~~A~~l 45 (369)
+-+.-+++.|+||.|||+++.-+|..+
T Consensus 17 ~~G~l~vi~g~pg~GKS~~~~~~a~~~ 43 (186)
T pfam03796 17 QKGDLIIIAARPSMGKTAFALNIARNA 43 (186)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 888179999679998799999999999
No 368
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.96 E-value=0.029 Score=36.78 Aligned_cols=104 Identities=16% Similarity=0.228 Sum_probs=47.6
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 62010787988889999999996146877788665878999779999779877822245332233455566555445654
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKP 102 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p 102 (369)
-.-+.||.|+||||+.++++-.+....+... ..|. .-...|..+++++-- .-|-.+ -+.
T Consensus 27 iv~ilGpNGaGKSTllk~i~G~l~p~~G~i~-----~~g~-------~~~~~pq~~~LSGGq-----rQRv~i----Ara 85 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNGDNDE-----WDGI-------TPVYKPQYIDLSGGE-----LQRVAI----AAA 85 (177)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEE-----ECCC-------CEECCCCCCCCCHHH-----HHHHHH----HHH
T ss_conf 9999899999999999999688678899466-----6686-------122155515079899-----999999----999
Q ss_pred HCCCCCEEEEECHH-HCCCCHHHHHHHHHHHCCC--CCCEEEEECCCC
Q ss_conf 20465237751156-6480016789999972122--111466506754
Q 537021.9.peg.4 103 ISARFRVYIMDEVQ-MLSTAAFNGLLKTLEEPPP--HVKFIFATTEIR 147 (369)
Q Consensus 103 ~~~~~kv~iid~a~-~m~~~a~NaLLK~lEEPp~--~~~fil~t~~~~ 147 (369)
.-.+.+++++||.- .|-....-.+++.+.+--. +..++++|++.+
T Consensus 86 l~~~p~lllLDEPts~LD~~~r~~i~~~ik~l~~~~~~Tvl~vsHdl~ 133 (177)
T cd03222 86 LLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA 133 (177)
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 823999999748865389999999999999999965977999858899
No 369
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.95 E-value=0.019 Score=38.19 Aligned_cols=32 Identities=41% Similarity=0.651 Sum_probs=26.4
Q ss_pred EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 06201078798888999999999614687778
Q 537021.9.peg.4 22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHID 53 (369)
Q Consensus 22 ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~ 53 (369)
....|.|++|+||||+++.+|+.|++.--+.+
T Consensus 3 ~~I~LiG~mGsGKstiGk~LA~~L~~~fiD~D 34 (172)
T PRK03731 3 QPLFLVGPRGCGKTTVGMALAQALGYRFVDTD 34 (172)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEECC
T ss_conf 98899889999889999999998599979786
No 370
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=94.94 E-value=0.031 Score=36.63 Aligned_cols=36 Identities=33% Similarity=0.431 Sum_probs=27.7
Q ss_pred HHHHHHH-HCCCCCEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999-828767062010787988889999999996
Q 537021.9.peg.4 9 KTLTNAF-KSGRIAQSYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 9 ~~l~~~~-~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l 45 (369)
+.|-..+ ++|+.-. -|+-|||-|||||+=|=+|+.+
T Consensus 111 ~~~~yL~d~~~~~~N-TLiIsPPq~GKTTlLRDlaR~~ 147 (282)
T TIGR02858 111 KILPYLVDRNGRVLN-TLIISPPQCGKTTLLRDLARIL 147 (282)
T ss_pred HHHHHHHCCCCCEEE-EEEECCCCCCCCCHHHHHHHHH
T ss_conf 668877305894467-8888688988510488898886
No 371
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.89 E-value=0.15 Score=31.52 Aligned_cols=87 Identities=18% Similarity=0.197 Sum_probs=39.8
Q ss_pred HCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCC-CCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 10787988889999999996146877788665878999779999779-87782224-53322334555665554456542
Q 537021.9.peg.4 26 LSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRG-NHVDVVEL-DAASHTSIDDVREIIDQIYYKPI 103 (369)
Q Consensus 26 f~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~-~~~d~~e~-~~~s~~~id~ir~l~~~~~~~p~ 103 (369)
++||+|+|||++|.-++ .+|+.+.....-++.+|.=+.-+.-.-+ ++.|-+.+ .+ ...++-.++++.+.-.-.
T Consensus 65 iyG~~gsGKT~lal~~~--~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~---~~~e~q~~i~~~~~~~~~ 139 (279)
T COG0468 65 IYGPESSGKTTLALQLV--ANAQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQP---DTGEQQLEIAEKLARSGA 139 (279)
T ss_pred EECCCCCCHHHHHHHHH--HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEECC---CCHHHHHHHHHHHHHHCC
T ss_conf 84688765466899998--8865379808999589998999999988754215368668---977999999999987546
Q ss_pred CCCCCEEEEECHHHC
Q ss_conf 046523775115664
Q 537021.9.peg.4 104 SARFRVYIMDEVQML 118 (369)
Q Consensus 104 ~~~~kv~iid~a~~m 118 (369)
+ +.+++|||.+-.+
T Consensus 140 ~-~i~LvVVDSvaa~ 153 (279)
T COG0468 140 E-KIDLLVVDSVAAL 153 (279)
T ss_pred C-CCCEEEEECCCCC
T ss_conf 8-8788998257434
No 372
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.88 E-value=0.25 Score=29.90 Aligned_cols=37 Identities=32% Similarity=0.333 Sum_probs=26.7
Q ss_pred HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999828767062010787988889999999996
Q 537021.9.peg.4 9 KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 9 ~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l 45 (369)
..|-+.+.-=+-++-+++.|+||+|||+++.-+|..+
T Consensus 18 ~~LD~~~~Gl~~GeL~viaarpg~GKT~f~~~~a~~~ 54 (271)
T cd01122 18 PVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred HHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 6688873799998089999689986999999999999
No 373
>PRK10536 hypothetical protein; Provisional
Probab=94.88 E-value=0.049 Score=35.11 Aligned_cols=123 Identities=19% Similarity=0.152 Sum_probs=58.8
Q ss_pred HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-C---CCCCCHHHHHHHCCCCCCCC-C----
Q ss_conf 9999999828767062010787988889999999996146877788665-8---78999779999779877822-2----
Q 537021.9.peg.4 9 KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV-E---FEGFGEHCQAIIRGNHVDVV-E---- 79 (369)
Q Consensus 9 ~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~-~---~c~~c~~c~~i~~~~~~d~~-e---- 79 (369)
+.+-+++.++.+- +-.||+|+|||-+|-+.|-.++-+. ..+.... - +.|. .-|--|--+ |
T Consensus 65 ~~yi~~i~~~~iv---f~~GpAGTGKT~lA~a~Al~~l~~~-~~~kIIltRP~V~~ge-------~lGfLPGdl~EK~~P 133 (262)
T PRK10536 65 LHYLKAIESKQLI---FATGEAGCGKTWISAAKAAEALIHK-DVDRIIVTRPVLQADE-------DLGFLPGDIAEKFAP 133 (262)
T ss_pred HHHHHHHHHCCEE---EEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCC-------CCCCCCCCHHHHHHH
T ss_conf 9999998619839---9989998758999999999999858-8868999667875676-------667698987998878
Q ss_pred -C----CCCC-CCCHHHHHHH-------HHHHHHHHHCCC---CCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf -4----5332-2334555665-------554456542046---5237751156648001678999997212211146650
Q 537021.9.peg.4 80 -L----DAAS-HTSIDDVREI-------IDQIYYKPISAR---FRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFAT 143 (369)
Q Consensus 80 -~----~~~s-~~~id~ir~l-------~~~~~~~p~~~~---~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t 143 (369)
+ |.-. ..+.+.+..+ ++...+.-.+|+ ..++|+|||..+|..-.-.+| -.-..++.+|++.
T Consensus 134 yl~Pi~D~L~~~lg~~~~~~~~~~e~G~Iei~PlafmRGrTf~na~IIvDEaQN~T~~qmk~iL---TRiG~~SKiVi~G 210 (262)
T PRK10536 134 YFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFL---TRLGENVTVIVNG 210 (262)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHCCCEEEEEHHHHCCCCCCCEEEEEEHHHCCCHHHHHHHH---HHCCCCCEEEEEC
T ss_conf 8878999999996859999998730594899875874477514428998412128999998898---5425996899968
Q ss_pred CC
Q ss_conf 67
Q 537021.9.peg.4 144 TE 145 (369)
Q Consensus 144 ~~ 145 (369)
.-
T Consensus 211 D~ 212 (262)
T PRK10536 211 DI 212 (262)
T ss_pred CC
T ss_conf 82
No 374
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=94.87 E-value=0.018 Score=38.32 Aligned_cols=24 Identities=42% Similarity=0.544 Sum_probs=20.8
Q ss_pred HHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 010787988889999999996146
Q 537021.9.peg.4 25 MLSGTRGIGKTTTARIIARSLNYK 48 (369)
Q Consensus 25 lf~G~~G~GK~~~a~~~A~~l~c~ 48 (369)
.|+||+|+||+++|+.+|+.+...
T Consensus 2 ~l~G~~G~GKS~~a~~la~~~~~~ 25 (105)
T pfam00910 2 WLYGPPGCGKSTLAKYLARALLDH 25 (105)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 897999898899999999999998
No 375
>KOG1533 consensus
Probab=94.82 E-value=0.12 Score=32.24 Aligned_cols=37 Identities=14% Similarity=0.266 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHHHCCCCCCEE-------EEECCCCCCCHHHHHH
Q ss_conf 48001678999997212211146-------6506754330356754
Q 537021.9.peg.4 118 LSTAAFNGLLKTLEEPPPHVKFI-------FATTEIRKIPITVLSR 156 (369)
Q Consensus 118 m~~~a~NaLLK~lEEPp~~~~fi-------l~t~~~~~ll~TI~SR 156 (369)
++.++-|..+|.||. .+..+. ..|++|++.+.+..+-
T Consensus 112 t~h~~l~~I~~~Lek--~~~rl~~V~LiDs~ycs~p~~~iS~lL~s 155 (290)
T KOG1533 112 THHDSLNKIFRKLEK--LDYRLVAVNLIDSHYCSDPSKFISSLLVS 155 (290)
T ss_pred ECCCHHHHHHHHHHH--CCCEEEEEEEEECEEECCHHHHHHHHHHH
T ss_conf 425609999999997--69537999733021437848999999999
No 376
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=94.81 E-value=0.02 Score=38.01 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=22.4
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 620107879888899999999961468
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSLNYKT 49 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l~c~~ 49 (369)
-.=+.||+|+||||+|+.+++.|+-..
T Consensus 36 lIgIaG~pGSGKSTlA~~l~~~L~~~~ 62 (230)
T PRK09270 36 VVGIAGPPGAGKSTLAETLWEALSQQG 62 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 999989998899999999999986237
No 377
>KOG2228 consensus
Probab=94.80 E-value=0.064 Score=34.29 Aligned_cols=166 Identities=22% Similarity=0.299 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHH-HHHHHHHCCCCCCCCCCCCCCCCCCHHH----HHHH----CCCC
Q ss_conf 48999999999982876706201078798888999-9999996146877788665878999779----9997----7987
Q 537021.9.peg.4 4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTA-RIIARSLNYKTAHIDVPTVEFEGFGEHC----QAII----RGNH 74 (369)
Q Consensus 4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a-~~~A~~l~c~~~~~~~~~~~~c~~c~~c----~~i~----~~~~ 74 (369)
|+++-+.+++.+..|. +|+.++.||+|+|||.+. .+++. +-+.+ ...-+....|.-.+= +.|. ....
T Consensus 33 ~~~l~~~lkqt~~~gE-snsviiigprgsgkT~li~~~Ls~--~q~~~-E~~l~v~Lng~~~~dk~al~~I~rql~~e~~ 108 (408)
T KOG2228 33 QKHLSELLKQTILHGE-SNSVIIIGPRGSGKTILIDTRLSD--IQENG-ENFLLVRLNGELQTDKIALKGITRQLALELN 108 (408)
T ss_pred HHHHHHHHHHHHHHCC-CCCEEEECCCCCCCEEEEHHHHHH--HHHCC-CEEEEEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999998447-772699814778816740778766--77517-7279998785001558999999999999975
Q ss_pred CCCCCCCCCCCCCH-HHHHHHHHHHHHHH-HCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC----CCCCEEEEECCC--
Q ss_conf 78222453322334-55566555445654-20465237751156648001678999997212----211146650675--
Q 537021.9.peg.4 75 VDVVELDAASHTSI-DDVREIIDQIYYKP-ISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP----PHVKFIFATTEI-- 146 (369)
Q Consensus 75 ~d~~e~~~~s~~~i-d~ir~l~~~~~~~p-~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp----~~~~fil~t~~~-- 146 (369)
.++. +-.+. |..-.+.+-+..+- ..+..-|||.||.|.+-...-..||=-+=+-. ..+..|.+|+..
T Consensus 109 ~~~k-----~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~ 183 (408)
T KOG2228 109 RIVK-----SFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDI 183 (408)
T ss_pred HHHE-----EECCCCHHHHHHHHHHHCCCCCCCCEEEEEEEHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCH
T ss_conf 3212-----42253346999999873378778851999831000246403567899998887624798699985032338
Q ss_pred -CCCCHHHHHHH---HHHHCCCCCCHHHHHHHHHHH
Q ss_conf -43303567543---332102454001356787643
Q 537021.9.peg.4 147 -RKIPITVLSRC---QRFDLHRISIGDLIELFTKIL 178 (369)
Q Consensus 147 -~~ll~TI~SRc---q~~~f~~l~~~~i~~~L~~i~ 178 (369)
+.+=.-..||- |++-+++.+-++.++.+++.+
T Consensus 184 lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228 184 LELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHH
T ss_conf 999999987433552462269888588999999973
No 378
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=94.78 E-value=0.19 Score=30.87 Aligned_cols=147 Identities=17% Similarity=0.155 Sum_probs=72.7
Q ss_pred CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCC--CCCCCCCCCCCHHHHHHHCCCCCCCCC---CCCC---CC---C
Q ss_conf 87670620107879888899999999961468777--886658789997799997798778222---4533---22---3
Q 537021.9.peg.4 18 GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHI--DVPTVEFEGFGEHCQAIIRGNHVDVVE---LDAA---SH---T 86 (369)
Q Consensus 18 ~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~--~~~~~~~c~~c~~c~~i~~~~~~d~~e---~~~~---s~---~ 86 (369)
.+.|| ++..|.+|+||+++...+-.++....... ...+++|++.--+ .+. ..|.+.. -|.. .+ .
T Consensus 528 ak~~h-lli~G~tgsGKSv~lnt~i~Sll~~~~P~ev~~~~iD~k~~~L~--~~~--~iPHl~~~v~td~~~k~~~al~~ 602 (858)
T COG1674 528 AKAGH-LLIAGATGSGKSVALNTMILSLLYTHSPEEVRFYIIDPKMLELA--AYD--GLPHLGDPVVTDEKEKAEKALAE 602 (858)
T ss_pred CCCCC-EEEECCCCCCHHHHHHHHHHHHHHCCCCHHEEEEEECCCCCCCH--HHC--CCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 56888-78824888651558999999987518906849999747875433--330--69855772324747789999999
Q ss_pred CHHH------------HHHHHHHHHH-----HHHCCCCCEEEEECHHHCCCCH----HHHHHHHHHH-CCCCCCEEEEEC
Q ss_conf 3455------------5665554456-----5420465237751156648001----6789999972-122111466506
Q 537021.9.peg.4 87 SIDD------------VREIIDQIYY-----KPISARFRVYIMDEVQMLSTAA----FNGLLKTLEE-PPPHVKFIFATT 144 (369)
Q Consensus 87 ~id~------------ir~l~~~~~~-----~p~~~~~kv~iid~a~~m~~~a----~NaLLK~lEE-Pp~~~~fil~t~ 144 (369)
-+++ +|++..+=.. .-..=+|.|+||||...|-..+ -+++-+..=+ ...+.-.|++|.
T Consensus 603 ~~~eme~R~~l~~~~~vr~i~~yn~k~~~~~~~~~lP~iviiiDe~adlm~~~~k~ve~~i~rLa~~ara~GIHlilatq 682 (858)
T COG1674 603 LVAEMERRYKLFSEKGVRNIEGYNEKIAGAIPDEELPYIVIIIDEYADLMMVAGKELEELIARLAQKGRAAGIHLILATQ 682 (858)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 99999999998888566627777654202455567980899944478886123176999999999978765826999748
Q ss_pred CCCC-CCHHHHHHH-HHHHCCCCCCHH
Q ss_conf 7543-303567543-332102454001
Q 537021.9.peg.4 145 EIRK-IPITVLSRC-QRFDLHRISIGD 169 (369)
Q Consensus 145 ~~~~-ll~TI~SRc-q~~~f~~l~~~~ 169 (369)
.|+. +++.|+..- .++.|+--+..+
T Consensus 683 Rps~dVit~ikan~psrIaf~v~s~~d 709 (858)
T COG1674 683 RPSVDVITGIKANIPTRIALRLSSKID 709 (858)
T ss_pred CCCCCHHHHHHHCCCCCEEEEECCCCC
T ss_conf 999504088885387525665168765
No 379
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.77 E-value=0.068 Score=34.08 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=18.7
Q ss_pred EEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 062010787988889999999996
Q 537021.9.peg.4 22 QSYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 22 ha~lf~G~~G~GK~~~a~~~A~~l 45 (369)
.-+-+.||.|+||||+.+.++..+
T Consensus 31 e~~~iiG~sGsGKTTll~~i~Gl~ 54 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 899999999986999999996699
No 380
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=94.77 E-value=0.072 Score=33.91 Aligned_cols=24 Identities=29% Similarity=0.648 Sum_probs=19.4
Q ss_pred EEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 062010787988889999999996
Q 537021.9.peg.4 22 QSYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 22 ha~lf~G~~G~GK~~~a~~~A~~l 45 (369)
--+-+-||.||||||+.|.++.-+
T Consensus 55 Ei~~ivG~SGsGKSTLlr~i~gL~ 78 (400)
T PRK10070 55 EIFVIMGLSGSGKSTMVRLLNRLI 78 (400)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 999999999846999999997599
No 381
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.77 E-value=0.022 Score=37.76 Aligned_cols=86 Identities=21% Similarity=0.361 Sum_probs=48.2
Q ss_pred HCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC-CCCCC-CHHHHHHHHHHHHHHHH
Q ss_conf 10787988889999999996146877788665878999779999779877822245-33223-34555665554456542
Q 537021.9.peg.4 26 LSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELD-AASHT-SIDDVREIIDQIYYKPI 103 (369)
Q Consensus 26 f~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~-~~s~~-~id~ir~l~~~~~~~p~ 103 (369)
+.||+|+||+|+|+.+|+.|++..-..+. + ..-++. .+|.+ +..+||..+...+.. +
T Consensus 4 IdGpagsGKsT~ak~lA~~l~~~~ldtG~--------------i------r~~ev~~~~s~ia~~~~VR~~l~~~Qr~-~ 62 (147)
T cd02020 4 IDGPAGSGKSTVAKLLAKKLGLPYLDTGG--------------I------RTEEVGKLASEVAAIPEVRKALDERQRE-L 62 (147)
T ss_pred EECCCCCCHHHHHHHHHHHHCCEEECCCC--------------C------CCHHHHHHHHHHCCCHHHHHHHHHHHHH-H
T ss_conf 86899789899999999990990776654--------------2------5489989999981978899999999999-9
Q ss_pred CCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 0465237751156648001678999997212211146650
Q 537021.9.peg.4 104 SARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFAT 143 (369)
Q Consensus 104 ~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t 143 (369)
. ..+=+|+|.=|.=+.-. |-..+.|+|.+
T Consensus 63 ~-~~~~~V~eGRDigtvV~----------P~A~lKifL~A 91 (147)
T cd02020 63 A-KKPGIVLEGRDIGTVVF----------PDADLKIFLTA 91 (147)
T ss_pred H-HCCCEEEECCCCCCEEC----------CCCCEEEEEEC
T ss_conf 7-66996897131010244----------67476777758
No 382
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=94.76 E-value=0.078 Score=33.65 Aligned_cols=128 Identities=20% Similarity=0.269 Sum_probs=67.2
Q ss_pred CCCHHHHHHHHHHHHHCC---CC---------CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 928489999999999828---76---------706201078798888999999999614687778866587899977999
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSG---RI---------AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQA 68 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~---~~---------~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~ 68 (369)
|-||+.|++.+-=++-.| .+ -| .|+.|.||+||+.+=+.+++.. +...+ .+|++.+--.
T Consensus 288 IyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDIn-ILLvGDPgtaKSqlLk~v~~~a----Pr~vy----tsgkgss~~G 358 (682)
T COG1241 288 IYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIH-ILLVGDPGTAKSQLLKYVAKLA----PRGVY----TSGKGSSAAG 358 (682)
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE-EEECCCCCHHHHHHHHHHHHHC----CCEEE----ECCCCCCCCC
T ss_conf 0381999999999960897664799862024226-9981798251999999988648----84079----7264125457
Q ss_pred HHCCCCCCCCCCCCCCCCCH-HHH-HH-HHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 97798778222453322334-555-66-5554456542046523775115664800167899999721221114665067
Q 537021.9.peg.4 69 IIRGNHVDVVELDAASHTSI-DDV-RE-IIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTE 145 (369)
Q Consensus 69 i~~~~~~d~~e~~~~s~~~i-d~i-r~-l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~ 145 (369)
+ .|+ .+ |.+ -+ .++-=.+ .-++.=|+-|||.|+|+....+|+.-.|| .+|+=|-
T Consensus 359 --------L---TAa---v~rd~~tge~~LeaGAL--VlAD~Gv~cIDEfdKm~~~dr~aihEaME---QQtIsIa---- 415 (682)
T COG1241 359 --------L---TAA---VVRDKVTGEWVLEAGAL--VLADGGVCCIDEFDKMNEEDRVAIHEAME---QQTISIA---- 415 (682)
T ss_pred --------C---EEE---EEECCCCCEEEEECCEE--EEECCCEEEEEECCCCCHHHHHHHHHHHH---HCEEEEC----
T ss_conf --------3---069---99706776078867779--99249779997056777678999999987---5275120----
Q ss_pred CCCCCHHHHHHHHHH
Q ss_conf 543303567543332
Q 537021.9.peg.4 146 IRKIPITVLSRCQRF 160 (369)
Q Consensus 146 ~~~ll~TI~SRcq~~ 160 (369)
---|..|.-+||-++
T Consensus 416 KAGI~atLnARcsvL 430 (682)
T COG1241 416 KAGITATLNARCSVL 430 (682)
T ss_pred CCCEEEECCHHHHHH
T ss_conf 554254111444456
No 383
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=94.74 E-value=0.093 Score=33.09 Aligned_cols=110 Identities=17% Similarity=0.131 Sum_probs=51.7
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC-----CCCCCCCCCHHHHHHHHHH
Q ss_conf 62010787988889999999996146877788665878999779999779877822-----2453322334555665554
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVV-----ELDAASHTSIDDVREIIDQ 97 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~-----e~~~~s~~~id~ir~l~~~ 97 (369)
-.+++||.|.||||+-|.++-.+.........| +........|.+. ..+..|. +--+...+..-
T Consensus 23 ~~iItGpN~sGKSt~Lr~i~l~~~~a~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~lSg-g~~~~~~l~~~ 91 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLALGGAQSATRRR----------SGVKAGCIVAAVSAELIFTRLQLSG-GEKELSALALI 91 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCC----------HHHHCCCCCHHHEEEEEECCCCCCC-CHHHHHHHHHH
T ss_conf 899989987757999999999999863267752----------5554277640230576641200054-29999999999
Q ss_pred HHHHHHCCCCCEEEEECHHH-CCC----CHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 45654204652377511566-480----016789999972122111466506754
Q 537021.9.peg.4 98 IYYKPISARFRVYIMDEVQM-LST----AAFNGLLKTLEEPPPHVKFIFATTEIR 147 (369)
Q Consensus 98 ~~~~p~~~~~kv~iid~a~~-m~~----~a~NaLLK~lEEPp~~~~fil~t~~~~ 147 (369)
+... ..++..++++||.-. ++. ..+.++++.+.+ ++.+|++|+.++
T Consensus 92 l~~~-~~~~~~lillDE~~~Gtd~~~~~~l~~~i~~~~~~---~~~~i~tTH~~e 142 (162)
T cd03227 92 LALA-SLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK---GAQVIVITHLPE 142 (162)
T ss_pred HHHC-CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC---CCEEEEECCHHH
T ss_conf 9854-24898489963655799988999999999999976---998999797399
No 384
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter; InterPro: IPR005897 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains ABC-type bacteriocin transporter. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Peptide bacteriocins are exported across the cytoplasmic membrane by a dedicated ATP-binding cassette (ABC) transporter. These ABC-transporters have an N-terminal peptidase domain that belong to MEROPS peptidase family C39 (clan CA); a central multi-pass transmembrane region and a C-terminal ABC transporter domain. These transporters have dual function: (i) they remove the N-terminal leader peptide from its bacteriocin precursor by cleavage at a Gly-Gly bond and (ii) transport the mature bacteriocin across the cytoplasmic membrane. This represents a novel strategy for secretion of bacterial proteins . Many bacteria are known to regulate diverse physiological processes through this system, such as bioluminescence, regulation of sporulation, virulence factor expression, antibiotics production, competence for genetic transformation, and activation of biofilm formation .; GO: 0008234 cysteine-type peptidase activity, 0019534 toxin transporter activity, 0006810 transport, 0016020 membrane.
Probab=94.72 E-value=0.074 Score=33.83 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=17.9
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 62010787988889999999996
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l 45 (369)
..=+.|+-|+||||+|+.+-+-.
T Consensus 502 k~tiVGmSGSGKsTLaKLLV~Ff 524 (710)
T TIGR01193 502 KITIVGMSGSGKSTLAKLLVGFF 524 (710)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 48997367974899998752035
No 385
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=94.71 E-value=0.2 Score=30.66 Aligned_cols=111 Identities=23% Similarity=0.247 Sum_probs=53.8
Q ss_pred HHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCHHHHHHHC-CCCCCCCCCCCCCC
Q ss_conf 999999998287670620107879888899999999961468777886658-7899977999977-98778222453322
Q 537021.9.peg.4 8 IKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVE-FEGFGEHCQAIIR-GNHVDVVELDAASH 85 (369)
Q Consensus 8 ~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~-~c~~c~~c~~i~~-~~~~d~~e~~~~s~ 85 (369)
++.+.+-....|-| +|+.||.|.||+-+||..-..-...+ +.+++.++ -|.+-.--..++. ..| +-++ -
T Consensus 197 ieqierva~rsr~p--~ll~gptgagksflarriyelk~arh-q~sg~fvevncatlrgd~amsalfgh-----vkga-f 267 (531)
T COG4650 197 IEQIERVAIRSRAP--ILLNGPTGAGKSFLARRIYELKQARH-QFSGAFVEVNCATLRGDTAMSALFGH-----VKGA-F 267 (531)
T ss_pred HHHHHHHHHHCCCC--EEEECCCCCCHHHHHHHHHHHHHHHH-HCCCCEEEEEEEEECCCHHHHHHHHH-----HHCC-C
T ss_conf 99999998614697--68646887436689999999998887-53786278863000475288998764-----0013-1
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC
Q ss_conf 334555665554456542046523775115664800167899999721
Q 537021.9.peg.4 86 TSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP 133 (369)
Q Consensus 86 ~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP 133 (369)
+|..+-|+=+ +++..|+ ..++||.-.+-.+-|--|||.+||-
T Consensus 268 tga~~~r~gl----lrsadgg--mlfldeigelgadeqamllkaieek 309 (531)
T COG4650 268 TGARESREGL----LRSADGG--MLFLDEIGELGADEQAMLLKAIEEK 309 (531)
T ss_pred CCCHHHHHHH----HCCCCCC--EEEHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 4633455442----4337786--5756743324752788999998871
No 386
>PRK02496 adk adenylate kinase; Provisional
Probab=94.70 E-value=0.022 Score=37.68 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=22.4
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 20107879888899999999961468
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKT 49 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~ 49 (369)
.+|.||||+||.|.|+.+|+.+++.+
T Consensus 4 iillG~PGSGKgTqa~~L~~~~~~~h 29 (185)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLQIPH 29 (185)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEE
T ss_conf 99979999998999999999969977
No 387
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.66 E-value=0.039 Score=35.90 Aligned_cols=22 Identities=50% Similarity=0.579 Sum_probs=17.5
Q ss_pred EEHHCCCCCCCHHHHHHHHHHH
Q ss_conf 6201078798888999999999
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARS 44 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~ 44 (369)
-.-+.||.|+||||+.+++|--
T Consensus 28 ~~~i~GpSG~GKSTlLr~iaGl 49 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999999988099999999769
No 388
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=94.66 E-value=0.023 Score=37.52 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 48999999999982876706201078798888999999999614
Q 537021.9.peg.4 4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNY 47 (369)
Q Consensus 4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c 47 (369)
|++.++.=.+...+++-+--+=|||+.|+||||+|-|+.+.|.-
T Consensus 2 H~~~~t~~~r~~~~~h~g~vlWlTGLSGsGKsTiA~Al~~~L~~ 45 (187)
T TIGR00455 2 HPAAITKDERQALNKHRGVVLWLTGLSGSGKSTIANALEKKLEK 45 (187)
T ss_pred CCCCCCHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 88777878999862797389851168856357999999999996
No 389
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.60 E-value=0.13 Score=32.08 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=19.4
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 620107879888899999999961
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSLN 46 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l~ 46 (369)
.+-+.||.|+||||+.+.++.-+-
T Consensus 28 ~~~iiG~SGsGKSTll~~i~gL~~ 51 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLND 51 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999999999819999999974450
No 390
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=94.57 E-value=0.037 Score=36.02 Aligned_cols=34 Identities=29% Similarity=0.520 Sum_probs=16.0
Q ss_pred HHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999828767062010787988889999999996
Q 537021.9.peg.4 12 TNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 12 ~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l 45 (369)
.++-..|.-|....|+|.+|+||+|+|+++.+.|
T Consensus 434 ~R~~~~g~~~~~iw~tGlsgsGKstiA~~le~~L 467 (613)
T PRK05506 434 ARAARKGQKPATVWFTGLSGSGKSTIANLVERRL 467 (613)
T ss_pred HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9999748997699997789897479999999999
No 391
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=94.57 E-value=0.18 Score=31.05 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=23.3
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 7062010787988889999999996146
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARSLNYK 48 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~ 48 (369)
++-+-|+|.+|+||||+|+.+.+.|...
T Consensus 2 G~viW~TGLsGsGKTTlA~~l~~~L~~~ 29 (157)
T pfam01583 2 GCTVWFTGLSGSGKSTIANALERKLFAQ 29 (157)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 8899988989999999999999999975
No 392
>PRK13768 GTPase; Provisional
Probab=94.57 E-value=0.03 Score=36.73 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=23.2
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 7062010787988889999999996146
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARSLNYK 48 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~ 48 (369)
+.+.++.||+|+||||+...+.+.+-..
T Consensus 2 ~~~~~ViGpaGSGKsT~~~~l~~~l~~~ 29 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLVGALSDWLEEQ 29 (253)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 7189998999998899999999999976
No 393
>PRK08118 topology modulation protein; Reviewed
Probab=94.55 E-value=0.029 Score=36.86 Aligned_cols=29 Identities=38% Similarity=0.597 Sum_probs=23.6
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 20107879888899999999961468777
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKTAHI 52 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~ 52 (369)
.+..|++|+||+|+|+.+|+.+++..-+.
T Consensus 4 I~IiG~~GsGKSTlAr~L~~~~~ip~~~L 32 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLNIPVHHL 32 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEC
T ss_conf 99988999879999999999889697964
No 394
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.50 E-value=0.088 Score=33.28 Aligned_cols=20 Identities=35% Similarity=0.498 Sum_probs=16.9
Q ss_pred EEHHCCCCCCCHHHHHHHHH
Q ss_conf 62010787988889999999
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIA 42 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A 42 (369)
-+.+.||.|+||||+-++++
T Consensus 26 ~~~i~GpSGsGKSTLL~~i~ 45 (206)
T TIGR03608 26 MVAIVGESGSGKSTLLNIIG 45 (206)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998799970999999997
No 395
>KOG0925 consensus
Probab=94.49 E-value=0.23 Score=30.21 Aligned_cols=113 Identities=24% Similarity=0.302 Sum_probs=54.8
Q ss_pred CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH------HHHHHCCCCCCCC---CC-------CCC
Q ss_conf 6706201078798888999999999614687778866587899977------9999779877822---24-------533
Q 537021.9.peg.4 20 IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEH------CQAIIRGNHVDVV---EL-------DAA 83 (369)
Q Consensus 20 ~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~------c~~i~~~~~~d~~---e~-------~~~ 83 (369)
-.+..+|.|..|+||||-.--|.-.- |..-... -.|-+-.. .+++.. -.||. |+ |-.
T Consensus 61 ~nQ~~v~vGetgsGKttQiPq~~~~~-~~~~~~~----v~CTQprrvaamsva~RVad--EMDv~lG~EVGysIrfEdC~ 133 (699)
T KOG0925 61 NNQIIVLVGETGSGKTTQIPQFVLEY-ELSHLTG----VACTQPRRVAAMSVAQRVAD--EMDVTLGEEVGYSIRFEDCT 133 (699)
T ss_pred CCCEEEEEECCCCCCCCCCCHHHHHH-HHHHCCC----EEECCCHHHHHHHHHHHHHH--HHCCCCCHHCCCCCCCCCCC
T ss_conf 48269999348888645474999999-8763366----13247157889999998888--74431020115321212368
Q ss_pred CCCCH-----HHHHHHHHHHHHHHHCCCCCEEEEECHHHC--CCCHHHHHHHH--HHHCCCCCCEEEE
Q ss_conf 22334-----555665554456542046523775115664--80016789999--9721221114665
Q 537021.9.peg.4 84 SHTSI-----DDVREIIDQIYYKPISARFRVYIMDEVQML--STAAFNGLLKT--LEEPPPHVKFIFA 142 (369)
Q Consensus 84 s~~~i-----d~ir~l~~~~~~~p~~~~~kv~iid~a~~m--~~~a~NaLLK~--lEEPp~~~~fil~ 142 (369)
|+..+ | +-|+..+.-.|.-|+|+|+|+||||.= -++.--.|||- ++.| +--+.|+.
T Consensus 134 ~~~T~Lky~tD--gmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rp-dLk~vvmS 198 (699)
T KOG0925 134 SPNTLLKYCTD--GMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRP-DLKLVVMS 198 (699)
T ss_pred CHHHHHHHHCC--HHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEE
T ss_conf 71589999533--2899987508554530079953166666789999999999986198-81699940
No 396
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.46 E-value=0.078 Score=33.66 Aligned_cols=195 Identities=18% Similarity=0.147 Sum_probs=88.0
Q ss_pred CCHHHHHHHHH----HHHHCCCC-CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf 28489999999----99982876-70620107879888899999999961468777886658789997799997798778
Q 537021.9.peg.4 2 IGQKPMIKTLT----NAFKSGRI-AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVD 76 (369)
Q Consensus 2 iGq~~~~~~l~----~~~~~~~~-~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d 76 (369)
-|.+.++..+- .+.+.+.. -..+++.||.|.||+++|+.+-+.+.-. ...+.+. |+ ...||=
T Consensus 61 fGme~~i~~iV~~~ksAA~g~e~~kqIllL~GPVGsGKSsl~e~LK~glE~y----~~Y~i~g---sP------m~e~PL 127 (358)
T pfam08298 61 FGMEETIERIVNYFRHAAQGLEERKQILYLLGPVGGGKSSLAERLKKLLELV----PIYALKG---SP------VFESPL 127 (358)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCC----CEEEECC---CC------CCCCCC
T ss_conf 0159999999999999972367210589997789877589999999872058----6488448---97------778985
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 22245332233455566555445654204652377511566480016789999972122111466506754330356754
Q 537021.9.peg.4 77 VVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSR 156 (369)
Q Consensus 77 ~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SR 156 (369)
.+ + .-++.|+..++-.=-| ++ . |+. .|+.-+ .+-|||.-...--+ ...++.+.++.|
T Consensus 128 ~L-~------~p~~~r~~le~~~gi~---~~--~-i~g--~l~P~~----~~rL~e~~Gd~~~~----~V~r~~~S~~~r 184 (358)
T pfam08298 128 HL-F------NPHHLRDILEDEYGIP---RR--R-LEG--DLSPWC----TKRLEEFGGDIEKF----KVVKIFPSILRQ 184 (358)
T ss_pred CC-C------CHHHHHHHHHHHHCCC---HH--H-CCC--CCCHHH----HHHHHHHCCCHHHE----EEEEECCCCCCC
T ss_conf 47-7------8677599999874995---21--2-089--889899----99999938985527----899955560045
Q ss_pred HHHHHCCCCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHH-CCCCHHHHHHCCCCCCH
Q ss_conf 33321024540--0135678764310134562566445653167642001100011100000-01210322000135677
Q 537021.9.peg.4 157 CQRFDLHRISI--GDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCN-DKIVTSSVRLMLALADR 233 (369)
Q Consensus 157 cq~~~f~~l~~--~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~-~~i~~e~v~~llg~~~~ 233 (369)
.=+-.|.|-++ +++....- + ..+..++.+++.++| |.+.= =++..++ +-+...++. ..+.
T Consensus 185 ~gi~t~~P~D~~nqD~s~L~G----~-------vdi~kl~~~~~~dP~-a~~~~-G~l~~aNrGl~efvE~~----K~~~ 247 (358)
T pfam08298 185 IGIAKTEPGDENNQDISALVG----K-------VDIRKLEEYSQNDPD-AYSYS-GALNRANQGLMEFVEMF----KAPI 247 (358)
T ss_pred EEEEEECCCCCCCCCHHHHHH----H-------HHHHHHHHHCCCCCC-EECCC-CCEECCCCCCEEEHHHH----CCCH
T ss_conf 689996899987633778743----3-------209877410447984-24567-70000357755409876----1829
Q ss_pred HHHHHHHHHHHCCCHH
Q ss_conf 7778888763013633
Q 537021.9.peg.4 234 NRIMDLFGYLIKGDII 249 (369)
Q Consensus 234 ~~i~~Ll~ai~~~d~~ 249 (369)
+.+..|+.+.-.++.+
T Consensus 248 ~~L~~lL~atQE~~i~ 263 (358)
T pfam08298 248 KVLHPLLTATQEGNYN 263 (358)
T ss_pred HHHHHHHCCCCCCCCC
T ss_conf 9999985221246224
No 397
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=94.45 E-value=0.07 Score=34.02 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=16.0
Q ss_pred EHHCCCCCCCHHHHHHHHHH
Q ss_conf 20107879888899999999
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIAR 43 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~ 43 (369)
.=++||+|+|||.++.-+|-
T Consensus 46 TEi~G~~gsGKTQlc~qlav 65 (261)
T pfam08423 46 TEVFGEFRTGKTQLCHTLCV 65 (261)
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99989988878999999999
No 398
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=94.44 E-value=0.073 Score=33.85 Aligned_cols=109 Identities=16% Similarity=0.275 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHCCCCCEE-EHHCCCCCCCHHHHHHHHHHHHC--------CCCCCCCCCCCCCCCCCHHH----HHHHC
Q ss_conf 8999999999982876706-20107879888899999999961--------46877788665878999779----99977
Q 537021.9.peg.4 5 KPMIKTLTNAFKSGRIAQS-YMLSGTRGIGKTTTARIIARSLN--------YKTAHIDVPTVEFEGFGEHC----QAIIR 71 (369)
Q Consensus 5 ~~~~~~l~~~~~~~~~~ha-~lf~G~~G~GK~~~a~~~A~~l~--------c~~~~~~~~~~~~c~~c~~c----~~i~~ 71 (369)
++..+.|.+.|.+ ||- .|.+||.|+||||+=.+==..|| ||+|-.+. ++.=|+---= -.|+.
T Consensus 231 ~~~l~~~~~li~r---pHGIiLVTGPTGSGKtTTLYaaL~~LN~~~~NIlTvEDPVEY~--i~GIgQ~Qvn~kIglTFA~ 305 (495)
T TIGR02533 231 PELLSSLERLIKR---PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQ--IEGIGQIQVNPKIGLTFAA 305 (495)
T ss_pred HHHHHHHHHHHHC---CCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCEEEE--ECCCCEEEECCCCCHHHHH
T ss_conf 8899999999718---8961884177898525889999986358997156865782476--2487636514654303888
Q ss_pred C------CCCCCCCCCCCCCCCHHHHHHHH--HHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHH
Q ss_conf 9------87782224533223345556655--544565420465237751156648001678999997
Q 537021.9.peg.4 72 G------NHVDVVELDAASHTSIDDVREII--DQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLE 131 (369)
Q Consensus 72 ~------~~~d~~e~~~~s~~~id~ir~l~--~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lE 131 (369)
| +=||++ -|-+||++- +-+-+++.-|- .++--.| |.+||-|+=+.+.
T Consensus 306 GLRaILRQDPDii--------MvGEIRD~ETA~IAiQASLTGH---LVLSTLH--TNDAAgAvtRL~D 360 (495)
T TIGR02533 306 GLRAILRQDPDII--------MVGEIRDLETAQIAIQASLTGH---LVLSTLH--TNDAAGAVTRLID 360 (495)
T ss_pred HHHHHHCCCCCEE--------EEECCCCHHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHH
T ss_conf 8788642799889--------9823160689999998764325---7655655--4015446655532
No 399
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=94.40 E-value=0.28 Score=29.57 Aligned_cols=46 Identities=26% Similarity=0.395 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHC----CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 999999999982----87670620107879888899999999961468777
Q 537021.9.peg.4 6 PMIKTLTNAFKS----GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHI 52 (369)
Q Consensus 6 ~~~~~l~~~~~~----~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~ 52 (369)
++...|.+.... .|-++ .-+.|..|+||||+.+.+|+.|.+.--+.
T Consensus 115 ~~~~~l~~~~~~~~~~~~~~r-IaLIGlmGaGKSTvGr~LA~~Lg~pFvDl 164 (304)
T PRK08154 115 RARDALSGMLGTGGGAARRPR-IALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (304)
T ss_pred HHHHHHHHHHCCCCCCCCCCC-EEEECCCCCCHHHHHHHHHHHHCCCEEEC
T ss_conf 999998763023766677784-79889999988899999999959897787
No 400
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.39 E-value=0.13 Score=32.08 Aligned_cols=21 Identities=24% Similarity=0.465 Sum_probs=17.5
Q ss_pred EEHHCCCCCCCHHHHHHHHHH
Q ss_conf 620107879888899999999
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIAR 43 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~ 43 (369)
-+-+.||.|+||||+.++++-
T Consensus 37 ~v~iiG~sGsGKSTLl~~i~G 57 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGG 57 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999409999999966
No 401
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.39 E-value=0.028 Score=36.99 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=22.0
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 201078798888999999999614687
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKTA 50 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~ 50 (369)
.++-||||.||+|.|+.+|+.+.+.+-
T Consensus 3 iiilG~pGaGK~T~A~~La~~~~i~hl 29 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKLGLPHL 29 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 999899999889999999997699785
No 402
>pfam02367 UPF0079 Uncharacterized P-loop hydrolase UPF0079. This uncharacterized family contains a P-loop.
Probab=94.38 E-value=0.061 Score=34.44 Aligned_cols=95 Identities=23% Similarity=0.299 Sum_probs=52.2
Q ss_pred HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 99999998287670620107879888899999999961468777886658789997799997798778222453322334
Q 537021.9.peg.4 9 KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSI 88 (369)
Q Consensus 9 ~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~i 88 (369)
+.|.+.+..| ...+|.|+=|+|||+++|.++++|.+.. ....|+-..+..-+. .. ..-.|.|++.++. .
T Consensus 6 ~~ia~~l~~G---~vi~L~G~LGaGKTtfvr~i~~~lg~~~-~V~SPTF~lv~~Y~~-~~-~~i~H~DlYRl~~-----~ 74 (123)
T pfam02367 6 KRLAQLLKAG---DVVLLSGDLGAGKTTFVRGLAKGLGITG-NVTSPTFTLVNVYEP-GK-LPLYHYDLYRLED-----P 74 (123)
T ss_pred HHHHHHCCCC---CEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCCCCEEEEEEECC-CC-CEEEEEEEECCCC-----H
T ss_conf 9999768999---7999988877889999999999859988-737995588999708-99-6399998332699-----7
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECHHHC
Q ss_conf 555665554456542046523775115664
Q 537021.9.peg.4 89 DDVREIIDQIYYKPISARFRVYIMDEVQML 118 (369)
Q Consensus 89 d~ir~l~~~~~~~p~~~~~kv~iid~a~~m 118 (369)
+++-++- +--+.....|++|+=++++
T Consensus 75 ~e~~~lg----~~e~~~~~~i~~IEWpe~~ 100 (123)
T pfam02367 75 EELELLG----ILDYALEDGIILVEWPERL 100 (123)
T ss_pred HHHHHCC----CHHHHCCCCEEEEECCHHH
T ss_conf 7898778----6566269989999992332
No 403
>pfam05872 DUF853 Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. One member from Brucella melitensis is thought to be an ATPase.
Probab=94.35 E-value=0.2 Score=30.56 Aligned_cols=91 Identities=24% Similarity=0.250 Sum_probs=61.5
Q ss_pred CCEEEEECHHHCCCCHHHHHHHHHHH-----CCCCCCEEEEECCCCCCCHHHHH----HHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 52377511566480016789999972-----12211146650675433035675----4333210245400135678764
Q 537021.9.peg.4 107 FRVYIMDEVQMLSTAAFNGLLKTLEE-----PPPHVKFIFATTEIRKIPITVLS----RCQRFDLHRISIGDLIELFTKI 177 (369)
Q Consensus 107 ~kv~iid~a~~m~~~a~NaLLK~lEE-----Pp~~~~fil~t~~~~~ll~TI~S----Rcq~~~f~~l~~~~i~~~L~~i 177 (369)
.=||++||||-+=.+|.-+||.-+|- -...|=.+|+|.+|..||+++.+ |.|| .+|..++.+-+. ++..
T Consensus 258 KLVFFFDEAHLLF~dApkall~kIEqvVRLIRSKGVGVyFvTQnP~DiPd~VL~QLGnRVQH-ALRAfTP~DqKA-vk~a 335 (504)
T pfam05872 258 KLVFFFDEAHLLFNDAPKVLLEKVEQVVRLIRSKGVGVYFVTQNPLDLPDTVLAQLGNRVQH-ALRAFTPRDQKA-VKAA 335 (504)
T ss_pred EEEEEECHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHH-HHHCCCHHHHHH-HHHH
T ss_conf 38999401666524785999999999998753067359997278764708899988778899-986388546999-9999
Q ss_pred HHHCCCCCCHHHHHHHHHCCCC
Q ss_conf 3101345625664456531676
Q 537021.9.peg.4 178 LQEESIEFDPEAVAMIARASDG 199 (369)
Q Consensus 178 ~~~E~i~~d~~~l~~ia~~s~G 199 (369)
++.-..+..-+..+.|..++-|
T Consensus 336 a~tfr~np~~d~~~~it~LgvG 357 (504)
T pfam05872 336 ADTFRPNPDFDTEEAITELGTG 357 (504)
T ss_pred HHHCCCCCCCCHHHHHHHCCCC
T ss_conf 9857999766899998762765
No 404
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.35 E-value=0.03 Score=36.69 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=22.1
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 20107879888899999999961468
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKT 49 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~ 49 (369)
.+|.||||+||.|.|+.+|+.+++.+
T Consensus 3 iillG~PGsGKgTqa~~la~~~~~~~ 28 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPH 28 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEE
T ss_conf 99989999987999999999869917
No 405
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=94.34 E-value=0.036 Score=36.17 Aligned_cols=37 Identities=27% Similarity=0.472 Sum_probs=23.1
Q ss_pred HHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 999999828767062010787988889999999996146877
Q 537021.9.peg.4 10 TLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAH 51 (369)
Q Consensus 10 ~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~ 51 (369)
.|+....+.+ + =.|++||.|+||+|+ +|.-+++=|..
T Consensus 118 v~~~~a~~~~-G-LiLVTGPTGSGKSTT---lAsmIDyIN~~ 154 (350)
T TIGR01420 118 VLRELAERPR-G-LILVTGPTGSGKSTT---LASMIDYINKN 154 (350)
T ss_pred HHHHHHHCCC-C-CEEEECCCCCCHHHH---HHHHHHHHHCC
T ss_conf 9999983669-9-389876889867899---99999787403
No 406
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.32 E-value=0.11 Score=32.43 Aligned_cols=111 Identities=22% Similarity=0.313 Sum_probs=53.4
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----CHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 6201078798888999999999614687778866587899----977999977987782224533223345556655544
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGF----GEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQI 98 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~----c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~ 98 (369)
.+-+.||.|.||||+.++++-.+--..+.. ..+|+ .........|-. -+.++++. +- ..+
T Consensus 28 i~~lvG~nGaGKSTl~~~i~Gl~~p~~G~i-----~i~G~~i~~~~~~~~~~~gi~-~v~qLSgG------~~----Qrv 91 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYKPDSGEI-----LVDGKEVSFASPRDARRAGIA-MVYQLSVG------ER----QMV 91 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEE-----EECCEECCCCCHHHHHHCCCC-EECCCCHH------HH----HHH
T ss_conf 999998899899999999957768985789-----999999999999999987994-89469989------99----999
Q ss_pred HH-HHHCCCCCEEEEECHH-HCCCCHHHHHHHHHHHCC-CCCCEEEEECCCCCC
Q ss_conf 56-5420465237751156-648001678999997212-211146650675433
Q 537021.9.peg.4 99 YY-KPISARFRVYIMDEVQ-MLSTAAFNGLLKTLEEPP-PHVKFIFATTEIRKI 149 (369)
Q Consensus 99 ~~-~p~~~~~kv~iid~a~-~m~~~a~NaLLK~lEEPp-~~~~fil~t~~~~~l 149 (369)
.+ +..-.+.+++|+||.- .+-..+...+++.+.+-. .++-++++|++.+-+
T Consensus 92 ~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~l~~~G~til~vtH~l~~~ 145 (163)
T cd03216 92 EIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 999999729999999097557999999999999999987898999993849999
No 407
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.31 E-value=0.026 Score=37.13 Aligned_cols=46 Identities=33% Similarity=0.434 Sum_probs=30.9
Q ss_pred HHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 01078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 25 MLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 25 lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
-.+||||+||||.|+.+|..+....- .....-|.+....-.++.|.
T Consensus 4 tIsG~pGsG~TTva~~lAe~~gl~~v----------saG~iFR~~A~e~gmsl~ef 49 (179)
T COG1102 4 TISGLPGSGKTTVARELAEHLGLKLV----------SAGTIFREMARERGMSLEEF 49 (179)
T ss_pred EECCCCCCCCHHHHHHHHHHHCCCEE----------ECCHHHHHHHHHCCCCHHHH
T ss_conf 96179999702799999998297156----------21279999999839999999
No 408
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.30 E-value=0.08 Score=33.56 Aligned_cols=13 Identities=31% Similarity=0.253 Sum_probs=5.5
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 0016789999972
Q 537021.9.peg.4 120 TAAFNGLLKTLEE 132 (369)
Q Consensus 120 ~~a~NaLLK~lEE 132 (369)
..|..+..+++++
T Consensus 138 ~~a~~~a~~F~~~ 150 (306)
T PRK08939 138 LDALMAALDFLEA 150 (306)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999997
No 409
>PRK04328 hypothetical protein; Provisional
Probab=94.30 E-value=0.035 Score=36.20 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=23.9
Q ss_pred HHHHHHCCCCC--EEEHHCCCCCCCHHHHHHHHHHH
Q ss_conf 99999828767--06201078798888999999999
Q 537021.9.peg.4 11 LTNAFKSGRIA--QSYMLSGTRGIGKTTTARIIARS 44 (369)
Q Consensus 11 l~~~~~~~~~~--ha~lf~G~~G~GK~~~a~~~A~~ 44 (369)
|-..+. |-+| ..+|.+||||+|||++|.-|+..
T Consensus 13 LD~lL~-GGlp~gs~~Lv~G~pGtGKT~la~qFl~~ 47 (250)
T PRK04328 13 MDEILY-GGIPERNVVLLSGGPGTGKSIFSQQFLWN 47 (250)
T ss_pred HHHHCC-CCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 787515-99879969999828999989999999999
No 410
>pfam02572 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin adenosyltransferase, EC:2.5.1.17, involved in cobalamin (vitamin B12) biosynthesis. These enzymes catalyse the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.30 E-value=0.41 Score=28.35 Aligned_cols=118 Identities=18% Similarity=0.191 Sum_probs=64.0
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCC-CCCC---CCCCCHHHHHHHCCCCCCCCCCC-C-----CCCC---CHH
Q ss_conf 62010787988889999999996146877788-6658---78999779999779877822245-3-----3223---345
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDV-PTVE---FEGFGEHCQAIIRGNHVDVVELD-A-----ASHT---SID 89 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~-~~~~---~c~~c~~c~~i~~~~~~d~~e~~-~-----~s~~---~id 89 (369)
-.+++|+ |=||||.|.-+|-.-......... .-.+ .+|.-...++ +|++.... + .++. .++
T Consensus 6 i~iytG~-GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~-----l~~v~~~~~g~gf~~~~~~~~~d~~ 79 (172)
T pfam02572 6 LIVYTGN-GKGKSTAAFGMALRALGHGMRVGVVQFIKGKWETGEEAALEA-----LPEVEWHVMGEGFTWETQDRERDIA 79 (172)
T ss_pred EEEEECC-CCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHH-----CCCCEEEECCCCCCCCCCCCHHHHH
T ss_conf 9999579-997188999999998259988999999538877638999987-----8996899788998587888788999
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECHH-HCC--CCHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 556655544565420465237751156-648--001678999997212211146650675
Q 537021.9.peg.4 90 DVREIIDQIYYKPISARFRVYIMDEVQ-MLS--TAAFNGLLKTLEEPPPHVKFIFATTEI 146 (369)
Q Consensus 90 ~ir~l~~~~~~~p~~~~~kv~iid~a~-~m~--~~a~NaLLK~lEEPp~~~~fil~t~~~ 146 (369)
..++..+.+.-.-.++.|-++|+||.- .++ -=.-..++.+|++-|+++=.||+..++
T Consensus 80 ~a~~~~~~a~~~l~~~~~dlvVLDEi~~ai~~gli~~~~v~~~l~~rp~~~evVlTGr~~ 139 (172)
T pfam02572 80 AAREAWEKAKEALASGSYDLVVLDELNYALKYGYLDLEEVLELLRNRPEGQHVVLTGRGA 139 (172)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 999999999999758898999735579997559968999999998289987799989999
No 411
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.28 E-value=0.42 Score=28.26 Aligned_cols=29 Identities=31% Similarity=0.470 Sum_probs=24.0
Q ss_pred CCCCEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 87670620107879888899999999961
Q 537021.9.peg.4 18 GRIAQSYMLSGTRGIGKTTTARIIARSLN 46 (369)
Q Consensus 18 ~~~~ha~lf~G~~G~GK~~~a~~~A~~l~ 46 (369)
..-|+-+||.|-.|+||||+.=-+|+.+.
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~ 164 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLK 164 (340)
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 89867999993488863717999999999
No 412
>PRK13542 consensus
Probab=94.26 E-value=0.18 Score=31.06 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=19.8
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 7062010787988889999999996
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~l 45 (369)
+..+-+.||.|+||||+-+.++..+
T Consensus 44 Gei~~liGpNGaGKTTLlk~l~Gll 68 (224)
T PRK13542 44 GDLLQVMGPNGSGKTSLLRVLSGLM 68 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9799999999999999999995797
No 413
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=94.25 E-value=0.11 Score=32.62 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHH-CCCCCEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 4899999999998-28767062010787988889999999996
Q 537021.9.peg.4 4 QKPMIKTLTNAFK-SGRIAQSYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 4 q~~~~~~l~~~~~-~~~~~ha~lf~G~~G~GK~~~a~~~A~~l 45 (369)
|+..++.|.+... .|| +|-.=|+|+||.||+|+--.|-+.|
T Consensus 21 ~~~a~~ll~~i~p~~Gn-A~~vG~TG~PGaGKSTl~~~l~~~l 62 (333)
T TIGR00750 21 RELAKELLERILPKTGN-AHVVGITGVPGAGKSTLVEKLIMEL 62 (333)
T ss_pred HHHHHHHHHHHHHHCCC-CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79999999986243279-0787664688885777999998999
No 414
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.25 E-value=0.033 Score=36.37 Aligned_cols=26 Identities=35% Similarity=0.533 Sum_probs=22.3
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 20107879888899999999961468
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKT 49 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~ 49 (369)
++|.||||+||.|.|..+|+.++..+
T Consensus 3 iillGpPGsGKgT~a~~l~~~~~~~h 28 (225)
T PTZ00088 3 IVLFGAPGVGKGTFAEILSKKEKLKH 28 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEE
T ss_conf 99989999987999999999879906
No 415
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=94.25 E-value=0.22 Score=30.26 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=18.5
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 62010787988889999999996
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l 45 (369)
-.-+.||.|+||||+.++++.-+
T Consensus 29 ~~~liG~nGsGKSTll~~i~Gl~ 51 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999980999999996389
No 416
>PRK07261 topology modulation protein; Provisional
Probab=94.24 E-value=0.036 Score=36.11 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=22.8
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 2010787988889999999996146877
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKTAH 51 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~ 51 (369)
.+..|++|+||+|+|+.+|+.++...-.
T Consensus 3 I~IiG~sGsGKSTlAr~L~~~~~ip~~~ 30 (171)
T PRK07261 3 IAIIGYSGSGKSTLARFLGQHYNCPVLH 30 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 9998899986899999999987979797
No 417
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=94.23 E-value=0.55 Score=27.41 Aligned_cols=136 Identities=15% Similarity=0.209 Sum_probs=62.2
Q ss_pred HHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 99999982876706201078798888999999999614687778866587899977999977987782224533223345
Q 537021.9.peg.4 10 TLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSID 89 (369)
Q Consensus 10 ~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id 89 (369)
.|++.-...|=.. .++.|++|+|||++.+.|. ........|+.... ...+.-++ ..+.--|-+ |-+
T Consensus 4 ~~~~~~~~~~~~K-ililG~~~sGKTsll~~l~----~~~~~~~~pT~G~~-----~~~~~~~~-~~l~iwD~~---G~e 69 (173)
T cd04154 4 IIRKQKLKEREMR-ILILGLDNAGKTTILKKLL----GEDIDTISPTLGFQ-----IKTLEYEG-YKLNIWDVG---GQK 69 (173)
T ss_pred HHHHHHCCCCCEE-EEEECCCCCCHHHHHHHHC----CCCCCCCCCCCCEE-----EEEEEECC-EEEEEEECC---CCC
T ss_conf 7766554457318-9999899978899999983----99989726705777-----89999899-999999668---860
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECHHHCCC-CHHHHHHHHHHHC-CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 5566555445654204652377511566480-0167899999721-2211146650675433035675433321024540
Q 537021.9.peg.4 90 DVREIIDQIYYKPISARFRVYIMDEVQMLST-AAFNGLLKTLEEP-PPHVKFIFATTEIRKIPITVLSRCQRFDLHRISI 167 (369)
Q Consensus 90 ~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~-~a~NaLLK~lEEP-p~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~ 167 (369)
..|.+-.. .|+. +.-=||++|-.+.-+- ++.+-|-+.+.+| ..++.++++++-.+. + ..++.
T Consensus 70 ~~~~~~~~-y~~~--a~~ii~VvD~td~~~~~~~~~~l~~ll~~~~~~~~pili~~NK~Dl-~------------~~~~~ 133 (173)
T cd04154 70 TLRPYWRN-YFES--TDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDL-P------------GALSE 133 (173)
T ss_pred CCCHHHHH-HHCC--CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC-C------------CCCCH
T ss_conf 20058999-7226--6538999855657889999999999986354159847999876567-7------------78899
Q ss_pred HHHHHHHH
Q ss_conf 01356787
Q 537021.9.peg.4 168 GDLIELFT 175 (369)
Q Consensus 168 ~~i~~~L~ 175 (369)
++|.+++.
T Consensus 134 ~ei~~~l~ 141 (173)
T cd04154 134 EEIREALE 141 (173)
T ss_pred HHHHHHHH
T ss_conf 99999986
No 418
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.22 E-value=0.063 Score=34.35 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=19.0
Q ss_pred EEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 062010787988889999999996
Q 537021.9.peg.4 22 QSYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 22 ha~lf~G~~G~GK~~~a~~~A~~l 45 (369)
.-+.+.||-|+||||+-++++-.+
T Consensus 27 ~i~~i~G~NGsGKSTLlk~i~Gl~ 50 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799999999981999999996798
No 419
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=94.21 E-value=0.27 Score=29.69 Aligned_cols=58 Identities=16% Similarity=0.091 Sum_probs=41.1
Q ss_pred CEEEEECHHHCCCC-HHHHHHHHHHHCC--CCCCEEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 23775115664800-1678999997212--2111466506754330356754333210245
Q 537021.9.peg.4 108 RVYIMDEVQMLSTA-AFNGLLKTLEEPP--PHVKFIFATTEIRKIPITVLSRCQRFDLHRI 165 (369)
Q Consensus 108 kv~iid~a~~m~~~-a~NaLLK~lEEPp--~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l 165 (369)
-++|+||+|+|... ...++++++|==- ...+.++++|-|..+-.-+.+++....-...
T Consensus 340 S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~ 400 (733)
T COG1203 340 SLVILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVE 400 (733)
T ss_pred CCEEEECHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCEECC
T ss_conf 6778742754165430899999999999689978999278997999999998503761213
No 420
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.20 E-value=0.12 Score=32.37 Aligned_cols=28 Identities=36% Similarity=0.519 Sum_probs=19.3
Q ss_pred HHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 99828767062010787988889999999996
Q 537021.9.peg.4 14 AFKSGRIAQSYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 14 ~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l 45 (369)
.+..| + .++ -||.|.||||+-++++-.+
T Consensus 22 ~i~~G-i-~gl--lGpNGAGKSTll~~i~Gl~ 49 (211)
T cd03264 22 TLGPG-M-YGL--LGPNGAGKTTLMRILATLT 49 (211)
T ss_pred EECCC-E-EEE--ECCCCCHHHHHHHHHHCCC
T ss_conf 88897-5-999--9999823999999997596
No 421
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=94.19 E-value=0.13 Score=32.11 Aligned_cols=121 Identities=17% Similarity=0.330 Sum_probs=62.0
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 20107879888899999999961468777886658789997799997798-77822245332233455566555445654
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGN-HVDVVELDAASHTSIDDVREIIDQIYYKP 102 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~-~~d~~e~~~~s~~~id~ir~l~~~~~~~p 102 (369)
.|+-|..|.||||+...+.. -.......||..+.- ..+..++ ...+.++ .|-+.+|.+-+.-. .
T Consensus 2 IlilGLd~aGKTTil~~l~~---~~~~~~~~PT~Gf~~-----~~i~~~~~~l~~wDl-----gGq~~~R~~W~~Y~-~- 66 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSS---ERSLESVVPTTGFNS-----VAIPTQDAIMELLEI-----GGSQNLRKYWKRYL-S- 66 (164)
T ss_pred EEEECCCCCCHHHHHHHHHC---CCCCCCCCCCCCCCE-----EEEEECCEEEEEEEC-----CCHHHHHHHHHHHH-H-
T ss_conf 99996799989999999816---998765356327746-----999989999999853-----75288865699871-1-
Q ss_pred HCCCCCEEEEECHHHCC-CCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 20465237751156648-0016789999972122111466506754330356754333210245400135678
Q 537021.9.peg.4 103 ISARFRVYIMDEVQMLS-TAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELF 174 (369)
Q Consensus 103 ~~~~~kv~iid~a~~m~-~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L 174 (369)
...-=||++|.+|.-+ .+|...|-+.+++|+ ++-+++.+ |-+.++ ..++.++|.+.|
T Consensus 67 -~~~gIIfVVDssD~~rl~eak~~L~~ll~~~~-~~PlLIla-NKqDl~------------~a~s~~ei~~~L 124 (164)
T cd04162 67 -GSQGLIFVVDSADSERLPLARQELHQLLQHPP-DLPLVVLA-NKQDLP------------AARSVQEIHKEL 124 (164)
T ss_pred -CCCEEEEEEECCCHHHHHHHHHHHHHHHHCCC-CCEEEEEE-ECCCCC------------CCCCHHHHHHHC
T ss_conf -77589999956888899999999999970879-98699998-632433------------699999999866
No 422
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.18 E-value=0.075 Score=33.77 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=18.2
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 62010787988889999999996
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l 45 (369)
-+-+-||.|+||||+.+.++..+
T Consensus 27 ~~~liGpNGaGKSTllk~i~Gl~ 49 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999986999999997687
No 423
>TIGR01351 adk adenylate kinases; InterPro: IPR006259 Most members of this family are known or believed to be adenylate kinase. Adenylate kinase (ADK) 2.7.4.3 from EC converts ATP + AMP to ADP + ADP, that is, it uses ATP as a phosphate donor for AMP. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). However, some members accept other nucleotide triphosphates as donors, and may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (2.7.4.10 from EC) is Q9UIJ7 from SWISSPROT, a GTP:AMP phosphotransferase that has been identified in bovine heart and human cells and derived from mitrochondrail GTP AMP that is specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate .This family is designated subfamily rather than equivalog for this reason. ADK has also been identified in different bacterial species and in yeast . Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge. ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=94.14 E-value=0.034 Score=36.28 Aligned_cols=130 Identities=18% Similarity=0.332 Sum_probs=71.5
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH-HHCCCCCCCC--C---CCCCCCCC-H-HHH-HHH
Q ss_conf 201078798888999999999614687778866587899977999-9779877822--2---45332233-4-555-665
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQA-IIRGNHVDVV--E---LDAASHTS-I-DDV-REI 94 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~-i~~~~~~d~~--e---~~~~s~~~-i-d~i-r~l 94 (369)
++|-||||+||-|-|+.+|..+...+=.+. +=-|. |..+++.-.. + ||. .+ | |+| -+|
T Consensus 2 ~~~lGpPGsGKGTQa~~i~~~~gl~HISTG----------DllR~~~~~~T~LG~~~k~y~y~~~---G~LVPD~~v~~l 68 (232)
T TIGR01351 2 LILLGPPGSGKGTQAKRIAEKLGLPHISTG----------DLLRAAVKAGTPLGKKAKEYNYMDK---GELVPDEIVNQL 68 (232)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCH----------HHHHHHHHHCCHHHHHHHCCCCCCC---CCCCCHHHHHHH
T ss_conf 467559898766799999986088502025----------8999998707977898732672003---775778999999
Q ss_pred H-HHHHHHHHCC---CCCEEEEECHHHCCCCHHHHHHHHHHHC--CCCCCEEEEECCCCCCCHHHHHH-----H---HHH
Q ss_conf 5-5445654204---6523775115664800167899999721--22111466506754330356754-----3---332
Q 537021.9.peg.4 95 I-DQIYYKPISA---RFRVYIMDEVQMLSTAAFNGLLKTLEEP--PPHVKFIFATTEIRKIPITVLSR-----C---QRF 160 (369)
Q Consensus 95 ~-~~~~~~p~~~---~~kv~iid~a~~m~~~a~NaLLK~lEEP--p~~~~fil~t~~~~~ll~TI~SR-----c---q~~ 160 (369)
+ +.+...+-.+ .-+=||+|..=+ |.+-|-||=++++|. |-..+|-|-.++++-|..=|.+| | -++
T Consensus 69 v~~rl~~~~~~~~~~~~~GfILDGfPR-T~~QAeaL~~~l~~~g~~~d~V~~L~vp~~e~l~~R~~gR~~cp~cG~~Yh~ 147 (232)
T TIGR01351 69 VKERLQQNPDCVSLKSENGFILDGFPR-TLSQAEALDAMLKELGLPIDAVIELDVPDLEELVERITGRRICPSCGRVYHI 147 (232)
T ss_pred HHHHHHCCCCCEEEEECCCEEECCCCC-CHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf 999974560001101068626638888-7899999999998618984178885358799999977327330677855610
Q ss_pred HCCCCCC
Q ss_conf 1024540
Q 537021.9.peg.4 161 DLHRISI 167 (369)
Q Consensus 161 ~f~~l~~ 167 (369)
.|.|+..
T Consensus 148 ~f~pPk~ 154 (232)
T TIGR01351 148 KFNPPKV 154 (232)
T ss_pred CCCCCCC
T ss_conf 2278867
No 424
>PRK00625 shikimate kinase; Provisional
Probab=94.14 E-value=0.039 Score=35.85 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=25.1
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 201078798888999999999614687778
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKTAHID 53 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~ 53 (369)
..|.|++|+||||+++.+|+.|++.--+.+
T Consensus 3 I~LIG~mGsGKStiGk~LA~~l~~~FvD~D 32 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECH
T ss_conf 999899999889999999999399957749
No 425
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.14 E-value=0.032 Score=36.46 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=19.9
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 7062010787988889999999996
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~l 45 (369)
..+.|+.||+|+|||++|.-|+.+-
T Consensus 266 GsstLi~Gp~GtGKTtla~qFl~~~ 290 (501)
T PRK09302 266 GSIILVSGATGTGKTLLVSKFAEAA 290 (501)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9469998899988899999999999
No 426
>PRK06696 uridine kinase; Validated
Probab=94.13 E-value=0.099 Score=32.88 Aligned_cols=44 Identities=23% Similarity=0.369 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHCCCCCEEE--HHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 89999999999828767062--010787988889999999996146
Q 537021.9.peg.4 5 KPMIKTLTNAFKSGRIAQSY--MLSGTRGIGKTTTARIIARSLNYK 48 (369)
Q Consensus 5 ~~~~~~l~~~~~~~~~~ha~--lf~G~~G~GK~~~a~~~A~~l~c~ 48 (369)
.+.++.|...|.+-+..|-+ =+.|++|+||||+|..+|..|...
T Consensus 8 ~~~~~~~~~~i~~~~p~rpl~VgIdG~~gSGKTTlA~~La~~L~~~ 53 (227)
T PRK06696 8 KQVVKEIANHILTLNLTRPLRVAIDGITASGKTTFANELAEEIKKR 53 (227)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 7899999999983599986899977899878799999999999746
No 427
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=94.12 E-value=0.28 Score=29.52 Aligned_cols=41 Identities=20% Similarity=0.325 Sum_probs=25.2
Q ss_pred CEEEEECHHH-CCCCHHHHHHHHHHHCCC-CCCEEEEECCCCC
Q ss_conf 2377511566-480016789999972122-1114665067543
Q 537021.9.peg.4 108 RVYIMDEVQM-LSTAAFNGLLKTLEEPPP-HVKFIFATTEIRK 148 (369)
Q Consensus 108 kv~iid~a~~-m~~~a~NaLLK~lEEPp~-~~~fil~t~~~~~ 148 (369)
-+||+||+|. |-..-...+...+.|-.. .+.||++|++..-
T Consensus 118 p~~iLDEvdAaLD~~N~~r~~~~i~el~~~~sQfIiITH~~~~ 160 (178)
T cd03239 118 PFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEM 160 (178)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 6699827655479889999999999997389989999868999
No 428
>KOG0923 consensus
Probab=94.10 E-value=0.19 Score=30.86 Aligned_cols=110 Identities=28% Similarity=0.369 Sum_probs=52.4
Q ss_pred HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCC-------CCCC---C
Q ss_conf 99999998287670620107879888899999999961468777886658789997799997798-------7782---2
Q 537021.9.peg.4 9 KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGN-------HVDV---V 78 (369)
Q Consensus 9 ~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~-------~~d~---~ 78 (369)
..|-.+|+.+ +.+++.|.+|+||||- +-+.| .+.+....-..-.|- .=|++++-+ -.++ +
T Consensus 271 dell~av~e~---QVLiI~GeTGSGKTTQ---iPQyL-~EaGytk~gk~IgcT---QPRRVAAmSVAaRVA~EMgvkLG~ 340 (902)
T KOG0923 271 DELLKAVKEH---QVLIIVGETGSGKTTQ---IPQYL-YEAGYTKGGKKIGCT---QPRRVAAMSVAARVAEEMGVKLGH 340 (902)
T ss_pred HHHHHHHHHC---CEEEEECCCCCCCCCC---CCHHH-HHCCCCCCCCEEEEC---CCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999867---0899975788986445---62898-854213589467406---850688777999999985740143
Q ss_pred CC-------CCCCCCCH-----H--HHHHHHHHHHHHHHCCCCCEEEEECHHH--CCCCHHHHHHHHHHH
Q ss_conf 24-------53322334-----5--5566555445654204652377511566--480016789999972
Q 537021.9.peg.4 79 EL-------DAASHTSI-----D--DVREIIDQIYYKPISARFRVYIMDEVQM--LSTAAFNGLLKTLEE 132 (369)
Q Consensus 79 e~-------~~~s~~~i-----d--~ir~l~~~~~~~p~~~~~kv~iid~a~~--m~~~a~NaLLK~lEE 132 (369)
|+ |..|...| | -+|+++. -|--+.|-|+||||||- ++++--=+|.|-+-.
T Consensus 341 eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~----epdLasYSViiiDEAHERTL~TDILfgLvKDIar 406 (902)
T KOG0923 341 EVGYSIRFEDCTSEKTVLKYMTDGMLLREFLS----EPDLASYSVIIVDEAHERTLHTDILFGLVKDIAR 406 (902)
T ss_pred CCCEEEEECCCCCCCEEEEEECCHHHHHHHHC----CCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_conf 14448885035674122432243067998714----6342233599960243200345679998788875
No 429
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=0.5 Score=27.72 Aligned_cols=36 Identities=28% Similarity=0.454 Sum_probs=25.0
Q ss_pred HHHHHHHCCCCCE-EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999998287670-62010787988889999999996
Q 537021.9.peg.4 10 TLTNAFKSGRIAQ-SYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 10 ~l~~~~~~~~~~h-a~lf~G~~G~GK~~~a~~~A~~l 45 (369)
.|-+.+--|=+|. +.|+.|.||+||+|+-.-.|..+
T Consensus 81 EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~l 117 (456)
T COG1066 81 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARL 117 (456)
T ss_pred HHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 8876536772366179973689877989999999998
No 430
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.08 E-value=0.17 Score=31.24 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=19.0
Q ss_pred EEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 062010787988889999999996
Q 537021.9.peg.4 22 QSYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 22 ha~lf~G~~G~GK~~~a~~~A~~l 45 (369)
.-+-+.||.|+||||+.++++-.+
T Consensus 28 e~~~l~G~NGaGKSTLl~~l~Gl~ 51 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 899999999985999999997688
No 431
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.08 E-value=0.072 Score=33.91 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=18.3
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 62010787988889999999996
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l 45 (369)
-+-+.||.|+||||+.++++-.+
T Consensus 30 i~~llG~NGaGKSTLl~~i~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999899973999999996698
No 432
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=94.05 E-value=0.046 Score=35.36 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=28.6
Q ss_pred CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 67062010787988889999999996146877788
Q 537021.9.peg.4 20 IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDV 54 (369)
Q Consensus 20 ~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~ 54 (369)
.+-++++.||.++|||.+|..+|+.++++--..+.
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DS 36 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDS 36 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCH
T ss_conf 96379998988757789999999982992893023
No 433
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=94.05 E-value=0.04 Score=35.82 Aligned_cols=29 Identities=31% Similarity=0.344 Sum_probs=24.4
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 70620107879888899999999961468
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARSLNYKT 49 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~ 49 (369)
+..+++.||.|+|||.+|..+|+.++++-
T Consensus 4 ~~ii~i~GpTasGKs~la~~la~~~~~eI 32 (304)
T PRK00091 4 PKLIVLVGPTASGKTALAIELAKRLNGEI 32 (304)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEE
T ss_conf 97799989886589999999999879989
No 434
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.03 E-value=0.066 Score=34.18 Aligned_cols=102 Identities=22% Similarity=0.241 Sum_probs=52.3
Q ss_pred EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 06201078798888999999999614687778866587899977999977987782224533223345556655544565
Q 537021.9.peg.4 22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYK 101 (369)
Q Consensus 22 ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~ 101 (369)
..+-+.||.|+||||+.++++-.+. .. .|+.. +.... .+-.++--| +=.+-|-.+ -+
T Consensus 27 e~~~l~G~NGsGKTTl~~~l~G~~~----~~-------~G~i~----~~~~~--~i~y~~QLS--gGqkqr~~l----a~ 83 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE----PD-------EGIVT----WGSTV--KIGYFEQLS--GGEKMRLAL----AK 83 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC----CC-------CEEEE----ECCCC--EEEEEHHCC--HHHHHHHHH----HH
T ss_conf 9999998999849999999848988----98-------50999----99960--899870079--999999999----99
Q ss_pred HHCCCCCEEEEECHH-HCCCCHHHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 420465237751156-64800167899999721221114665067543
Q 537021.9.peg.4 102 PISARFRVYIMDEVQ-MLSTAAFNGLLKTLEEPPPHVKFIFATTEIRK 148 (369)
Q Consensus 102 p~~~~~kv~iid~a~-~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ 148 (369)
..-.+.+|+|+||.- .+-..+...+.+.|.|.. . .+|++|++.+-
T Consensus 84 al~~~p~iliLDEPt~~LD~~~~~~i~~~l~~~~-~-tii~vsHd~~~ 129 (144)
T cd03221 84 LLLENPNLLLLDEPTNHLDLESIEALEEALKEYP-G-TVILVSHDRYF 129 (144)
T ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC-C-EEEEEECCHHH
T ss_conf 9725998999957755589999999999999709-9-99999679899
No 435
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.98 E-value=0.45 Score=28.03 Aligned_cols=141 Identities=13% Similarity=0.105 Sum_probs=70.1
Q ss_pred CCCCEE--EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH-HHHHHCCCCC----------CCCCCCCC-
Q ss_conf 876706--201078798888999999999614687778866587899977-9999779877----------82224533-
Q 537021.9.peg.4 18 GRIAQS--YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEH-CQAIIRGNHV----------DVVELDAA- 83 (369)
Q Consensus 18 ~~~~ha--~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~-c~~i~~~~~~----------d~~e~~~~- 83 (369)
|-+|+. .|..|+.|+||+.+-..|+.-+ |.++.....+. .-.+-.. -+++.+-+++ .+++++..
T Consensus 23 GGiP~GsL~lIEGd~~tGKSvLsqr~~YG~-L~~g~~v~yvs-Te~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~ 100 (235)
T COG2874 23 GGIPVGSLILIEGDNGTGKSVLSQRFAYGF-LMNGYRVTYVS-TELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEP 100 (235)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHH-HHCCCEEEEEE-ECHHHHHHHHHHHHCCCCCHHHHHCCEEEEEEECCCC
T ss_conf 997467699998889854889999999988-70895489998-4035999999888638871687750626899932454
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC-CCHHHHHHHHHHHC---CCCCCEEEEECCCCCCC----HHHHH
Q ss_conf 223345556655544565420465237751156648-00167899999721---22111466506754330----35675
Q 537021.9.peg.4 84 SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS-TAAFNGLLKTLEEP---PPHVKFIFATTEIRKIP----ITVLS 155 (369)
Q Consensus 84 s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~-~~a~NaLLK~lEEP---p~~~~fil~t~~~~~ll----~TI~S 155 (369)
.+-+-.+.|.+++.+.-..-.-++-|+|||.-.... .+..++.|-+|+.- .+.-..|++|-+|+.+. --|+|
T Consensus 101 ~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp~~l~e~~~~rirs 180 (235)
T COG2874 101 VNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHPSALDEDVLTRIRS 180 (235)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHCCHHHHHHHHH
T ss_conf 22573778999999975577523778999534377652649999999999999872897899994734337899999987
Q ss_pred HHHHH
Q ss_conf 43332
Q 537021.9.peg.4 156 RCQRF 160 (369)
Q Consensus 156 Rcq~~ 160 (369)
=|-.+
T Consensus 181 ~~d~~ 185 (235)
T COG2874 181 ACDVY 185 (235)
T ss_pred HHHEE
T ss_conf 52025
No 436
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=93.97 E-value=0.61 Score=27.06 Aligned_cols=15 Identities=27% Similarity=0.364 Sum_probs=12.2
Q ss_pred EEHHCCCCCCCHHHH
Q ss_conf 620107879888899
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTT 37 (369)
Q Consensus 23 a~lf~G~~G~GK~~~ 37 (369)
-.+...|.|+|||.+
T Consensus 38 dvi~~a~TGSGKTla 52 (203)
T cd00268 38 DVIGQAQTGSGKTAA 52 (203)
T ss_pred CEEEECCCCCCCHHH
T ss_conf 889975799722288
No 437
>pfam02374 ArsA_ATPase Anion-transporting ATPase. This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.
Probab=93.97 E-value=0.055 Score=34.75 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=18.8
Q ss_pred EHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 2010787988889999999996
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l 45 (369)
++|+|.-|+||||+|=++|..+
T Consensus 4 i~~~GKGGVGKTT~AaA~A~~~ 25 (304)
T pfam02374 4 IFFGGKGGVGKTTVSCATAVRL 25 (304)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9995798574899999999999
No 438
>KOG3347 consensus
Probab=93.96 E-value=0.039 Score=35.87 Aligned_cols=28 Identities=29% Similarity=0.433 Sum_probs=23.1
Q ss_pred CCCEEEHHCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 76706201078798888999999999614
Q 537021.9.peg.4 19 RIAQSYMLSGTRGIGKTTTARIIARSLNY 47 (369)
Q Consensus 19 ~~~ha~lf~G~~G~GK~~~a~~~A~~l~c 47 (369)
..|. .|.+|.||+||+|+|..+|.....
T Consensus 6 ~~PN-ILvtGTPG~GKstl~~~lae~~~~ 33 (176)
T KOG3347 6 ERPN-ILVTGTPGTGKSTLAERLAEKTGL 33 (176)
T ss_pred CCCC-EEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 3788-798679998802599999997398
No 439
>pfam05970 DUF889 PIF1 helicase. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated.
Probab=93.95 E-value=0.097 Score=32.94 Aligned_cols=46 Identities=24% Similarity=0.329 Sum_probs=29.9
Q ss_pred CCCEEEEECHHHCCCCHHHHHHHHHH--------HCCCCCCEEEEECCCCCCCHH
Q ss_conf 65237751156648001678999997--------212211146650675433035
Q 537021.9.peg.4 106 RFRVYIMDEVQMLSTAAFNGLLKTLE--------EPPPHVKFIFATTEIRKIPIT 152 (369)
Q Consensus 106 ~~kv~iid~a~~m~~~a~NaLLK~lE--------EPp~~~~fil~t~~~~~ll~T 152 (369)
+-+++||||+-|++..-+.++-+.+- +|=.++-.|| +=+.-+|||-
T Consensus 74 ~~~vLIIDEiSMv~~~lfd~id~~lr~i~~~~~~~PFGGiqvIl-~GDf~QLPPV 127 (418)
T pfam05970 74 KASLIIWDEAPMTHRHCFEALDRTLRDILKNTDDKPFGGKTVVL-GGDFRQILPV 127 (418)
T ss_pred HCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE-ECCHHHCCCC
T ss_conf 08799985411357899999999999987127876779747998-2447655875
No 440
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.92 E-value=0.041 Score=35.73 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.0
Q ss_pred HHCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 0107879888899999999961468
Q 537021.9.peg.4 25 MLSGTRGIGKTTTARIIARSLNYKT 49 (369)
Q Consensus 25 lf~G~~G~GK~~~a~~~A~~l~c~~ 49 (369)
+++|.||.||||+||.|...+-++.
T Consensus 3 VLcGLPaAGKTTLar~L~~~l~~~~ 27 (340)
T TIGR03575 3 VLCGLPAAGKSTLARSLSATLRRER 27 (340)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 4326987873689999999986444
No 441
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.92 E-value=0.23 Score=30.17 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=29.3
Q ss_pred HCCCCCEEEEECH-HHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 2046523775115-664800167899999721221114665067543
Q 537021.9.peg.4 103 ISARFRVYIMDEV-QMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRK 148 (369)
Q Consensus 103 ~~~~~kv~iid~a-~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ 148 (369)
.-++.+|+|+||. -.|-+.+...+...+.+-.....+|++|++.+-
T Consensus 148 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~~TillssH~l~e 194 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQE 194 (301)
T ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf 70799899994886678989999999999987599999998785899
No 442
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.90 E-value=0.56 Score=27.33 Aligned_cols=118 Identities=18% Similarity=0.171 Sum_probs=63.3
Q ss_pred EHHCCCCCCCHHHHHHHHH-HHHCCCCCCCCCCCCC---CCCCCHHHHHHHCCCCCCCCCCC-C-----CCCC---CHHH
Q ss_conf 2010787988889999999-9961468777886658---78999779999779877822245-3-----3223---3455
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIA-RSLNYKTAHIDVPTVE---FEGFGEHCQAIIRGNHVDVVELD-A-----ASHT---SIDD 90 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A-~~l~c~~~~~~~~~~~---~c~~c~~c~~i~~~~~~d~~e~~-~-----~s~~---~id~ 90 (369)
.+++|+ |=||||.|.-+| +++-..-.-.-..-.+ .+|.-..+++ +|++.... + .++. -+..
T Consensus 6 ~vytG~-GKGKTTAAlG~alRA~G~G~rV~ivQFlKg~~~~GE~~~l~~-----l~~i~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 6 QVYTGN-GKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALER-----LPNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred EEEECC-CCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHH-----CCCCEEEECCCCCCCCCCCCHHHHHH
T ss_conf 999579-997089999999998449998999998158987559999984-----89968998899973227987999999
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECHHH-C--CCCHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 566555445654204652377511566-4--80016789999972122111466506754
Q 537021.9.peg.4 91 VREIIDQIYYKPISARFRVYIMDEVQM-L--STAAFNGLLKTLEEPPPHVKFIFATTEIR 147 (369)
Q Consensus 91 ir~l~~~~~~~p~~~~~kv~iid~a~~-m--~~~a~NaLLK~lEEPp~~~~fil~t~~~~ 147 (369)
.++..+.+.-.-.++.|-++|+||+-. + .-=....++++|++-|+++=.||+..++.
T Consensus 80 a~~~~~~a~~~l~~~~~dlvVLDEi~~a~~~gli~~~~v~~~l~~rp~~~evVlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 999999999998688989997366899998599179999999984899978999699999
No 443
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=93.88 E-value=0.47 Score=27.92 Aligned_cols=114 Identities=18% Similarity=0.148 Sum_probs=61.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 78798888999999999614687778866587899977999977987782224533223345556655544565420465
Q 537021.9.peg.4 28 GTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARF 107 (369)
Q Consensus 28 G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~ 107 (369)
|..|+||+|++..+|..|-|.--..+. --.-.+-.+|.+|.-.+= +-.......+.+.+... .+++.
T Consensus 2 GVsG~GKStvg~~lA~~lg~~fidGDd-----lHp~aNi~KM~~GiPL~D-------dDR~pWL~~l~~~~~~~-~~~~~ 68 (161)
T COG3265 2 GVSGSGKSTVGSALAERLGAKFIDGDD-----LHPPANIEKMSAGIPLND-------DDRWPWLEALGDAAASL-AQKNK 68 (161)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEECCCC-----CCCHHHHHHHHCCCCCCC-------CHHHHHHHHHHHHHHHH-HCCCC
T ss_conf 877657779999999980982333565-----699889998727998984-------11247999999999986-42798
Q ss_pred CEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 23775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4 108 RVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF 160 (369)
Q Consensus 108 kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~ 160 (369)
.++|.-.|=+ + .-+-.|-+.-+++.||...-..+-++.-..+|--||
T Consensus 69 ~~vi~CSALK--r----~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHF 115 (161)
T COG3265 69 HVVIACSALK--R----SYRDLLREANPGLRFVYLDGDFDLILERMKARKGHF 115 (161)
T ss_pred CEEEECHHHH--H----HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCC
T ss_conf 1699627887--8----899998545997389996388999999987605677
No 444
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.86 E-value=0.032 Score=36.48 Aligned_cols=20 Identities=45% Similarity=0.494 Sum_probs=17.3
Q ss_pred HHCCCCCCCHHHHHHHHHHH
Q ss_conf 01078798888999999999
Q 537021.9.peg.4 25 MLSGTRGIGKTTTARIIARS 44 (369)
Q Consensus 25 lf~G~~G~GK~~~a~~~A~~ 44 (369)
|++||||+|||++|.-|+..
T Consensus 3 Li~G~pGsGKT~~a~qfl~~ 22 (187)
T cd01124 3 LLSGGPGTGKTTFALQFLYA 22 (187)
T ss_pred EEEECCCCCHHHHHHHHHHH
T ss_conf 58768999999999999999
No 445
>PRK00023 cmk cytidylate kinase; Provisional
Probab=93.83 E-value=0.045 Score=35.41 Aligned_cols=27 Identities=33% Similarity=0.608 Sum_probs=22.3
Q ss_pred HHCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 010787988889999999996146877
Q 537021.9.peg.4 25 MLSGTRGIGKTTTARIIARSLNYKTAH 51 (369)
Q Consensus 25 lf~G~~G~GK~~~a~~~A~~l~c~~~~ 51 (369)
=+-||.|+||+|+|+.+|+.|+...-.
T Consensus 8 aIDGpagSGKST~ak~lA~~L~~~yld 34 (225)
T PRK00023 8 AIDGPAGSGKGTVAKILAKKLGFHYLD 34 (225)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEC
T ss_conf 965898678789999999993988764
No 446
>PRK05541 adenylylsulfate kinase; Provisional
Probab=93.75 E-value=0.059 Score=34.57 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=23.4
Q ss_pred CCEEEHHCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 6706201078798888999999999614
Q 537021.9.peg.4 20 IAQSYMLSGTRGIGKTTTARIIARSLNY 47 (369)
Q Consensus 20 ~~ha~lf~G~~G~GK~~~a~~~A~~l~c 47 (369)
=+.-+.|+|.+|+||||+|+.+.+.|..
T Consensus 6 kg~viW~TGLsGSGKTTiA~~l~~~L~~ 33 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8679997899999899999999999997
No 447
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.74 E-value=0.11 Score=32.63 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999999828767062010787988889999999996
Q 537021.9.peg.4 6 PMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 6 ~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l 45 (369)
.....|+.+++.++ ..+++|+.|+||||+.+++..++
T Consensus 137 ~~a~~L~~~V~~r~---nilI~G~TgsGKTTll~all~~i 173 (320)
T PRK13894 137 EQREAIIAAVRAHR---NILVIGGTGSGKTTLVNAIINEM 173 (320)
T ss_pred HHHHHHHHHHHCCC---CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99999999997287---58998588865689999998632
No 448
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.74 E-value=0.17 Score=31.21 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=17.6
Q ss_pred EEHHCCCCCCCHHHHHHHHHHH
Q ss_conf 6201078798888999999999
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARS 44 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~ 44 (369)
-..+.||.|+||+|+.++++..
T Consensus 29 ~v~i~GpSGsGKSTLl~~i~gl 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999979995399999999629
No 449
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.72 E-value=0.11 Score=32.49 Aligned_cols=109 Identities=23% Similarity=0.260 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999999998287670620107879888899999999961468777886658--7899977999977987782224533
Q 537021.9.peg.4 6 PMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVE--FEGFGEHCQAIIRGNHVDVVELDAA 83 (369)
Q Consensus 6 ~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~--~c~~c~~c~~i~~~~~~d~~e~~~~ 83 (369)
...+.|+.+++.++ ..+++|+.|+||||+.+++...+-...+..-..+++ +.-.| .|++++.+...
T Consensus 132 ~~~~~L~~aV~~r~---nilVsGgTGSGKTTllnaL~~~i~~~~p~eRivtIEDt~EL~~---------~~~n~v~l~~~ 199 (323)
T PRK13833 132 AQASTIRSAISSRL---NIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQC---------AAENAVLLHTS 199 (323)
T ss_pred HHHHHHHHHHHCCC---CEEEECCCCCCHHHHHHHHHHHHCCCCCHHEEEEECCCCCCCC---------CCCCEEEEECC
T ss_conf 99999999998189---6899917777568999999986402893233999457501146---------78877787516
Q ss_pred CCCCHHHHHHHHH-HHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCC
Q ss_conf 2233455566555-44565420465237751156648001678999997212211
Q 537021.9.peg.4 84 SHTSIDDVREIID-QIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHV 137 (369)
Q Consensus 84 s~~~id~ir~l~~-~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~ 137 (369)
. .|+ +++|++ .++++|- -+|+-|+- -..+-.+|+.+---.++.
T Consensus 200 ~--~v~-~~~Ll~~aLRmrPD-----RIivGEvR---G~EA~~~L~A~nTGH~Gs 243 (323)
T PRK13833 200 D--TVD-MARLLKSTMRLRPD-----RIIVGEVR---DGAALTLLKAWNTGHPGG 243 (323)
T ss_pred C--CCC-HHHHHHHHHCCCCC-----EEEEECCC---CHHHHHHHHHHHCCCCCC
T ss_conf 9--869-99999997446997-----58883006---599999999982799986
No 450
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.71 E-value=0.1 Score=32.72 Aligned_cols=23 Identities=39% Similarity=0.364 Sum_probs=18.4
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 62010787988889999999996
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l 45 (369)
-.-+.||.|+||||+.+++|--.
T Consensus 28 ~~~ivGpSG~GKSTllr~i~Gl~ 50 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999983999999998599
No 451
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.64 E-value=0.32 Score=29.17 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=18.7
Q ss_pred EEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 062010787988889999999996
Q 537021.9.peg.4 22 QSYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 22 ha~lf~G~~G~GK~~~a~~~A~~l 45 (369)
..+-+.||.|+||||+++.++.-+
T Consensus 21 e~vaiiG~sGsGKSTLl~~l~GLl 44 (276)
T PRK13634 21 SYVAIIGHTGSGKSTLLQHLNGLL 44 (276)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 899999999969999999997499
No 452
>PRK07263 consensus
Probab=93.63 E-value=0.21 Score=30.52 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=18.6
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 7062010787988889999999996
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~l 45 (369)
++-+++.|.||.|||++|.-+|...
T Consensus 203 GdLiviaaRPsmGKTa~alnia~~i 227 (453)
T PRK07263 203 DQLIILAARPAVGKTAFVLNIAQNV 227 (453)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 8689997278884789999999999
No 453
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.62 E-value=0.17 Score=31.07 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=17.4
Q ss_pred EHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 2010787988889999999996
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l 45 (369)
.-+.||.|+||||+.+.++..+
T Consensus 30 ~~iiGpsGsGKSTLl~~i~gl~ 51 (241)
T cd03256 30 VALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999833999999997499
No 454
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=93.59 E-value=0.17 Score=31.21 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=21.6
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 2010787988889999999996146
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYK 48 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~ 48 (369)
.-..|+.|+||||+|+.+...+.++
T Consensus 11 IgIaG~SgSGKTTv~~~l~~~~~~~ 35 (218)
T COG0572 11 IGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 9986798778899999999982867
No 455
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.58 E-value=0.71 Score=26.58 Aligned_cols=102 Identities=23% Similarity=0.310 Sum_probs=51.4
Q ss_pred HHHHHHHHH-CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCC-CCCCCCCC-------CCHHHHHHHCCCCCCCC
Q ss_conf 999999998-2876706201078798888999999999614687778-86658789-------99779999779877822
Q 537021.9.peg.4 8 IKTLTNAFK-SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHID-VPTVEFEG-------FGEHCQAIIRGNHVDVV 78 (369)
Q Consensus 8 ~~~l~~~~~-~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~-~~~~~~c~-------~c~~c~~i~~~~~~d~~ 78 (369)
.+.|+.... .|+ +|-.=++|+||+||+|+.-.|.+.| ++.+.-. ...++|.. -.+.-|+-...+||+++
T Consensus 38 ~~ll~~l~p~tG~-a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vF 115 (323)
T COG1703 38 RELLRALYPRTGN-AHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVF 115 (323)
T ss_pred HHHHHHHHHCCCC-CCEEEECCCCCCCHHHHHHHHHHHH-HHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEE
T ss_conf 9999997311799-8378731799886688999999999-9779678999988999987853012076677644699817
Q ss_pred CCCCCCC---CCH-HHHHHHHHHHHHHHHCCCCCEEEEECH
Q ss_conf 2453322---334-555665554456542046523775115
Q 537021.9.peg.4 79 ELDAASH---TSI-DDVREIIDQIYYKPISARFRVYIMDEV 115 (369)
Q Consensus 79 e~~~~s~---~~i-d~ir~l~~~~~~~p~~~~~kv~iid~a 115 (369)
--.-+|. .|+ ...|+.+.-+- -++|-++||+-+
T Consensus 116 iRs~~srG~lGGlS~at~~~i~~ld----AaG~DvIIVETV 152 (323)
T COG1703 116 IRSSPSRGTLGGLSRATREAIKLLD----AAGYDVIIVETV 152 (323)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHH----HCCCCEEEEEEC
T ss_conf 8426877651016688999999998----618988999814
No 456
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.57 E-value=0.13 Score=31.90 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=18.5
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 62010787988889999999996
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l 45 (369)
-+-+.||.|+||||+.++++-.+
T Consensus 32 i~~LiGpNGaGKSTLlk~I~Gl~ 54 (251)
T PRK09544 32 ILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999899988999999996688
No 457
>PRK13766 Hef nuclease; Provisional
Probab=93.56 E-value=0.48 Score=27.83 Aligned_cols=159 Identities=15% Similarity=0.130 Sum_probs=77.6
Q ss_pred HHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCC-C--CCCCCCCC-CCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 9999999982876706201078798888999999999614687-7--78866587-899977999977987782224533
Q 537021.9.peg.4 8 IKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTA-H--IDVPTVEF-EGFGEHCQAIIRGNHVDVVELDAA 83 (369)
Q Consensus 8 ~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~-~--~~~~~~~~-c~~c~~c~~i~~~~~~d~~e~~~~ 83 (369)
.+.+.+++..| -|.+=|.|.|||..|..++...+-..+ . .-.|+... -.++..|+.+.....-++..+.|.
T Consensus 21 ~el~~~Al~~N-----tiVvLPTG~GKT~IA~lvi~~~l~~~~gKilFLaPT~pLV~Qq~~~~~~~l~i~~~~i~~ltG~ 95 (764)
T PRK13766 21 QLLAAKALKGN-----TLVVLPTGLGKTAIALLVIAERLQKYGGKVLILAPTKPLVEQHAEFFRKFLNIDPEKIVVLTGE 95 (764)
T ss_pred HHHHHHHHHCC-----EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 99999998589-----8999599866899999999999974898899985888899999999999709995528999888
Q ss_pred CCCCHHHHH--------------HHHHHH---HHHHHCCCCCEEEEECHHHCCCCH-HHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 223345556--------------655544---565420465237751156648001-67899999721221114665067
Q 537021.9.peg.4 84 SHTSIDDVR--------------EIIDQI---YYKPISARFRVYIMDEVQMLSTAA-FNGLLKTLEEPPPHVKFIFATTE 145 (369)
Q Consensus 84 s~~~id~ir--------------~l~~~~---~~~p~~~~~kv~iid~a~~m~~~a-~NaLLK~lEEPp~~~~fil~t~~ 145 (369)
.+.++-. -+...+ .+. -.+...+|+||||..+.+. -+-+.+-.-+...+-.++-.|.+
T Consensus 96 --~~~~~r~~~w~~~~Viv~TPQvl~ndL~~g~i~--l~dv~lLVfDEaHha~Gnh~Y~~I~~~y~~~~~~PrILGLTAS 171 (764)
T PRK13766 96 --ISPEKRAALWEKAKVIVATPQVIENDLLAGRIS--LEDVSLLIFDEAHRAVGNYAYVFIAERYHEDAKNPLVLGLTAS 171 (764)
T ss_pred --CCHHHHHHHHCCCCEEEECCHHHHHHHHHCCCC--HHHCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCC
T ss_conf --782768998607999999908999999829867--8882289997466666776289999999853778558850368
Q ss_pred CCCCCHHHHHHHHHHHC-----CCCCCHHHHHHHH
Q ss_conf 54330356754333210-----2454001356787
Q 537021.9.peg.4 146 IRKIPITVLSRCQRFDL-----HRISIGDLIELFT 175 (369)
Q Consensus 146 ~~~ll~TI~SRcq~~~f-----~~l~~~~i~~~L~ 175 (369)
|..-..-|.--|.-+.. +.-+..++..|+.
T Consensus 172 PGs~~e~I~ev~~nL~i~~ie~rte~d~dv~~yv~ 206 (764)
T PRK13766 172 PGSDEEKIKEVCENLGIEHVEVKTEDDPDVRPYVH 206 (764)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHCC
T ss_conf 87644899999986598728961444434454335
No 458
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=93.56 E-value=0.13 Score=31.96 Aligned_cols=55 Identities=18% Similarity=0.149 Sum_probs=33.4
Q ss_pred CCCCEEEEECHH-HCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 465237751156-6480016789999972122111466506754330356754333210
Q 537021.9.peg.4 105 ARFRVYIMDEVQ-MLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDL 162 (369)
Q Consensus 105 ~~~kv~iid~a~-~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f 162 (369)
.+..|+|+||-- .|-..+..-|...|.+.+. -+|+++++..- +..+-.|+-.+.-
T Consensus 173 ~~PdlLlLDEPTn~LD~~~~~~L~~~L~~~~g--tvliISHDr~f-L~~v~dri~~l~~ 228 (632)
T PRK11147 173 SNPDVLLLDEPTNHLDIETIEWLEGFLKTFQG--SIIFISHDRSF-IRNMATRIVDLDR 228 (632)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC--EEEEEECCHHH-HHHHCCCCEECCC
T ss_conf 89999998488765899999999999997598--49999756899-8752450000149
No 459
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.51 E-value=0.082 Score=33.49 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=18.7
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 62010787988889999999996
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l 45 (369)
.+-+.||.|+||||+.++++..+
T Consensus 27 ~~~liG~nGsGKTTLl~~i~G~~ 49 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999899988999999995798
No 460
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=93.47 E-value=0.34 Score=28.97 Aligned_cols=123 Identities=20% Similarity=0.206 Sum_probs=64.5
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 20107879888899999999961468777886658789997799997798-77822245332233455566555445654
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGN-HVDVVELDAASHTSIDDVREIIDQIYYKP 102 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~-~~d~~e~~~~s~~~id~ir~l~~~~~~~p 102 (369)
.|+.|-+|.||||+-..+. ........||..++- ..+.-++ ...+.++. |-+..|.+-+.-. .
T Consensus 2 ililGLd~aGKTTil~~l~----~~~~~~~~PT~G~~~-----~~~~~~~~~l~~~Dlg-----G~~~~R~lW~~Y~-~- 65 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQ----GEIPKKVAPTVGFTP-----TKLRLDKYEVCIFDLG-----GGANFRGIWVNYY-A- 65 (167)
T ss_pred EEEEEECCCCHHHHHHHHC----CCCCCCCCCCCCCCE-----EEEEECCEEEEEEECC-----CCHHHHHHHHHHC-C-
T ss_conf 8999008998899999982----899876508777317-----9999899999999899-----8778889999873-4-
Q ss_pred HCCCCCEEEEECHHHCC-CCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 20465237751156648-00167899999721221114665067543303567543332102454001356787
Q 537021.9.peg.4 103 ISARFRVYIMDEVQMLS-TAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFT 175 (369)
Q Consensus 103 ~~~~~kv~iid~a~~m~-~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L~ 175 (369)
...-=||+||.+|.-+ .+|...|-+.|++|.-.-+=||+--|-+.++ ..++.++|.+.|.
T Consensus 66 -~~~gIIfVVDssD~~rl~eak~~L~~lL~~~~l~~~PiLIlaNKqDl~------------~a~~~~ei~~~L~ 126 (167)
T cd04161 66 -EAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKK------------NALLGADVIEYLS 126 (167)
T ss_pred -CCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCC------------CCCCHHHHHHHHC
T ss_conf -776579998557588999999999999658877899599998865761------------5899999998819
No 461
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=93.46 E-value=0.18 Score=30.97 Aligned_cols=40 Identities=18% Similarity=0.237 Sum_probs=27.9
Q ss_pred CCCCEEEEECHH-HCCCCHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 465237751156-648001678999997212211146650675
Q 537021.9.peg.4 105 ARFRVYIMDEVQ-MLSTAAFNGLLKTLEEPPPHVKFIFATTEI 146 (369)
Q Consensus 105 ~~~kv~iid~a~-~m~~~a~NaLLK~lEEPp~~~~fil~t~~~ 146 (369)
.+.+++|+||-- .|-.++-..|.+.|-+.+. .+|+++++.
T Consensus 180 ~~PdlLlLDEPTn~LD~~~i~~L~~~L~~~~g--tvivVSHDr 220 (556)
T PRK11819 180 SKPDMLLLDEPTNHLDAESVAWLEQFLHDYPG--TVVAVTHDR 220 (556)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHCCC--CEEEEEECH
T ss_conf 69998998488777897789999999763378--779999157
No 462
>TIGR00954 3a01203 Peroxysomal long chain fatty acyl transporter; InterPro: IPR005283 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). The members of this family are integral membrane proteins and they are involved in the import of activated long-chain fatty acids from the cytosol to the peroxisomal matrix. ; GO: 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane.
Probab=93.46 E-value=0.047 Score=35.25 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=20.9
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 7062010787988889999999996
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~l 45 (369)
.| +|.+||-||||+++=|+++.-.
T Consensus 557 ~~-lLi~GPNGCGKSSLFRiLGeLW 580 (788)
T TIGR00954 557 NH-LLICGPNGCGKSSLFRILGELW 580 (788)
T ss_pred CE-EEEECCCCCCHHHHHHHHHHHC
T ss_conf 76-6876889986478999986430
No 463
>KOG0952 consensus
Probab=93.42 E-value=0.11 Score=32.43 Aligned_cols=36 Identities=25% Similarity=0.407 Sum_probs=22.3
Q ss_pred HHHHCCCCCEE------EHHCCCCCCCHHHHHHH-HHHHHCCC
Q ss_conf 99982876706------20107879888899999-99996146
Q 537021.9.peg.4 13 NAFKSGRIAQS------YMLSGTRGIGKTTTARI-IARSLNYK 48 (369)
Q Consensus 13 ~~~~~~~~~ha------~lf~G~~G~GK~~~a~~-~A~~l~c~ 48 (369)
|.+++--.|.| .|.+-|.|.|||-+|.. .-+.+-|+
T Consensus 112 N~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~ 154 (1230)
T KOG0952 112 NRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEH 154 (1230)
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 7778774146514788779977789971678999999999850
No 464
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.40 E-value=0.22 Score=30.35 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=17.0
Q ss_pred EEHHCCCCCCCHHHHHHHHHH
Q ss_conf 620107879888899999999
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIAR 43 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~ 43 (369)
.+-+.||.|+||||+.+.++-
T Consensus 28 i~~iiGpnGaGKSTLl~~i~G 48 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMG 48 (200)
T ss_pred EEEEECCCCCCHHHHHHHHCC
T ss_conf 999996899999999999707
No 465
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.39 E-value=0.44 Score=28.13 Aligned_cols=115 Identities=18% Similarity=0.200 Sum_probs=60.7
Q ss_pred HHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH-HHHHHCCCCCCCCCCCCCCCC
Q ss_conf 9999999982876706201078798888999999999614687778866587899977-999977987782224533223
Q 537021.9.peg.4 8 IKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEH-CQAIIRGNHVDVVELDAASHT 86 (369)
Q Consensus 8 ~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~-c~~i~~~~~~d~~e~~~~s~~ 86 (369)
+..++-+-..|++ -..+|.+|+|||+.+.-++.. ++....+.++||.+-.. |..+... . ...
T Consensus 84 ~~~~~~A~k~g~l---~~vyg~~g~gKt~a~~~y~~s----~p~~~l~~~~p~~~a~~~i~~i~~~---------~-~~~ 146 (297)
T COG2842 84 FFRTRPASKTGSL---VVVYGYAGLGKTQAAKNYAPS----NPNALLIEADPSYTALVLILIICAA---------A-FGA 146 (297)
T ss_pred HHHHHHHHHCCCE---EEEECCCCCHHHHHHHHHCCC----CCCCEEECCCHHHHHHHHHHHHHHH---------H-HCC
T ss_conf 5420555516854---788633220068999865335----8641361588136788999999998---------7-401
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf 345556655544565420465237751156648001678999997212211146
Q 537021.9.peg.4 87 SIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFI 140 (369)
Q Consensus 87 ~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fi 140 (369)
.-..+++..+...-.- ++..+.+++|||+.|-..|..-|.|..++.+-.++++
T Consensus 147 ~~~~~~d~~~~~~~~l-~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~~vLv 199 (297)
T COG2842 147 TDGTINDLTERLMIRL-RDTVRLIIVDEADRLPYRALEELRRIHDKTGIGVVLV 199 (297)
T ss_pred CCHHHHHHHHHHHHHH-CCCCCEEEEEHHHCCCHHHHHHHHHHHHHHCCEEEEE
T ss_conf 4216888899999997-1576526650321258689999999887508159983
No 466
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=93.38 E-value=0.093 Score=33.11 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=18.2
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 62010787988889999999996
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l 45 (369)
.+-+.||.|+||||+.++++-.+
T Consensus 50 ivgilG~NGaGKSTLl~~i~Gl~ 72 (224)
T cd03220 50 RIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999799981999999997587
No 467
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.33 E-value=0.29 Score=29.41 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=20.1
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 20107879888899999999961
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLN 46 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~ 46 (369)
+-|+|.+|+||||+|+.+.+.|.
T Consensus 2 iW~tGLsgsGKTTlA~~l~~~L~ 24 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 89879999999999999999999
No 468
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=93.33 E-value=0.056 Score=34.71 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=22.9
Q ss_pred EEEHHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 062010787988889999999996146
Q 537021.9.peg.4 22 QSYMLSGTRGIGKTTTARIIARSLNYK 48 (369)
Q Consensus 22 ha~lf~G~~G~GK~~~a~~~A~~l~c~ 48 (369)
...|..||||.||+|+|.++|..++-.
T Consensus 264 eGILIAG~PGaGKsTFaqAlAefy~~~ 290 (604)
T COG1855 264 EGILIAGAPGAGKSTFAQALAEFYASQ 290 (604)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 646995699997468999999999866
No 469
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=93.32 E-value=0.28 Score=29.61 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=18.4
Q ss_pred EHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 2010787988889999999996
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l 45 (369)
.+|+||.|+||+|++..+.+.+
T Consensus 4 ivl~GPSG~GK~tl~~~L~~~~ 25 (182)
T pfam00625 4 IVLSGPSGVGKSHIKKALLDEY 25 (182)
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9998989999999999999848
No 470
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.29 E-value=0.064 Score=34.29 Aligned_cols=23 Identities=30% Similarity=0.663 Sum_probs=20.5
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 20107879888899999999961
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLN 46 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~ 46 (369)
.+++|-||+||||+|+.+++.+.
T Consensus 2 ivl~GlP~SGKSt~a~~L~~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELSKKLS 24 (249)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 78967899989999999999999
No 471
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=93.23 E-value=0.66 Score=26.82 Aligned_cols=51 Identities=14% Similarity=0.072 Sum_probs=29.5
Q ss_pred CCCEEEEECHHHCCCCH-HHHHHHHHHHCCCCCCEE-EEECCCCCCCHHHHHH
Q ss_conf 65237751156648001-678999997212211146-6506754330356754
Q 537021.9.peg.4 106 RFRVYIMDEVQMLSTAA-FNGLLKTLEEPPPHVKFI-FATTEIRKIPITVLSR 156 (369)
Q Consensus 106 ~~kv~iid~a~~m~~~a-~NaLLK~lEEPp~~~~fi-l~t~~~~~ll~TI~SR 156 (369)
.-+.+||||||+|-... .+-+-+.+.+.|.....+ +.+|-++..+..+..+
T Consensus 149 ~l~~lVlDEAD~mld~gF~~~i~~I~~~~~~~~Q~llfSATl~~~~v~~l~~~ 201 (417)
T PRK11192 149 AVETLILDEADRMLDMGFAQDVEHIAAETRWRKQTLLFSATLEGDGVQDFAER 201 (417)
T ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHH
T ss_conf 57489996755211135478999998647677238999732684789999998
No 472
>PRK05595 replicative DNA helicase; Provisional
Probab=93.23 E-value=0.29 Score=29.40 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=17.6
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHH
Q ss_conf 706201078798888999999999
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARS 44 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~ 44 (369)
++-+++.|.||.|||++|.-+|..
T Consensus 201 GdLiiiaaRP~mGKTa~alnia~~ 224 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAEY 224 (444)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 777999857989807999999999
No 473
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=93.17 E-value=0.19 Score=30.77 Aligned_cols=50 Identities=18% Similarity=0.170 Sum_probs=31.1
Q ss_pred CCCCEEEEECHH-HCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 465237751156-64800167899999721221114665067543303567543
Q 537021.9.peg.4 105 ARFRVYIMDEVQ-MLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRC 157 (369)
Q Consensus 105 ~~~kv~iid~a~-~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRc 157 (369)
.+..|+|+||-- .|-..+..-|.+.|.+.+. -+|+++++.. ++..+..|+
T Consensus 166 ~~PdlLLLDEPTnhLD~~~i~~L~~~L~~~~g--tvilVSHDr~-fL~~v~dri 216 (638)
T PRK10636 166 CRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQG--TLILISHDRD-FLDPIVDKI 216 (638)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHCCC--EEEEEECCHH-HHHHCCCCE
T ss_conf 89998997088888998999999999997698--1999966689-887147716
No 474
>pfam00406 ADK Adenylate kinase.
Probab=93.16 E-value=0.13 Score=31.99 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=19.6
Q ss_pred HCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 10787988889999999996146
Q 537021.9.peg.4 26 LSGTRGIGKTTTARIIARSLNYK 48 (369)
Q Consensus 26 f~G~~G~GK~~~a~~~A~~l~c~ 48 (369)
|-||||+||.|.|..+|+.++..
T Consensus 1 i~G~PGsGKgTqa~~La~~~~~~ 23 (186)
T pfam00406 1 LLGPPGAGKGTQAERIVQKYGIV 23 (186)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCE
T ss_conf 91889898599999999985990
No 475
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=93.12 E-value=0.13 Score=31.98 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=32.6
Q ss_pred HHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 99999982876706201078798888999999999614
Q 537021.9.peg.4 10 TLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNY 47 (369)
Q Consensus 10 ~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c 47 (369)
.|.+-++.-+-|--.|+-|++|+||+|.|..+|..|.-
T Consensus 78 ~lwR~ir~~~~p~IILIGGasGVGkStIA~ElA~rLgI 115 (299)
T COG2074 78 LLWRRIRKMKRPLIILIGGASGVGKSTIAGELARRLGI 115 (299)
T ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC
T ss_conf 99999861578759996178877725799999997298
No 476
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.12 E-value=0.2 Score=30.62 Aligned_cols=113 Identities=17% Similarity=0.211 Sum_probs=52.9
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 62010787988889999999996146877788665-87899977999977987782224533223345556655544565
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV-EFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYK 101 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~-~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~ 101 (369)
-.|++||.|+||||+...+...+|-..... ..+. +| ..+ .|++..-+-.....+.| .....+ .-..
T Consensus 3 liLitG~TGSGKTTtl~all~~i~~~~~~~-IiTiEDP-------iE~---~~~~~~~~i~q~e~g~~-~~sf~~-~lr~ 69 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHH-ILTIEDP-------IEF---VHESKRSLINQREVGLD-TLSFEN-ALKA 69 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCE-EEEECCC-------HHH---HCCCCCEEEEECCCCCC-CCCHHH-HHHH
T ss_conf 899989999979999999998536378836-9996473-------775---23676448873330788-637999-9999
Q ss_pred HHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH
Q ss_conf 42046523775115664800167899999721221114665067543303567
Q 537021.9.peg.4 102 PISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVL 154 (369)
Q Consensus 102 p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~ 154 (369)
..+-+..|++|-|.- ..+++.+.+...+- .| .+++|-.......||.
T Consensus 70 aLR~~PDvI~vGEiR--d~et~~~al~aa~T--GH--lV~sTlHa~sa~~ai~ 116 (198)
T cd01131 70 ALRQDPDVILVGEMR--DLETIRLALTAAET--GH--LVMSTLHTNSAAKTID 116 (198)
T ss_pred HHHHCCCEEECCCCC--CHHHHHHHHHHHHC--CC--EEEEEECCCCHHHHHH
T ss_conf 985488857527778--99999999999971--99--3999767598999999
No 477
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=93.08 E-value=0.27 Score=29.64 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=17.3
Q ss_pred HHCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 01078798888999999999614687
Q 537021.9.peg.4 25 MLSGTRGIGKTTTARIIARSLNYKTA 50 (369)
Q Consensus 25 lf~G~~G~GK~~~a~~~A~~l~c~~~ 50 (369)
=++|++|+|||.++.-+| ++|+-+
T Consensus 107 Ei~Ge~gsGKTQlc~qLa--v~~qlp 130 (318)
T PRK04301 107 EFYGEFGSGKTQICHQLA--VNVQLP 130 (318)
T ss_pred EEECCCCCCCHHHHHHHH--HHEECC
T ss_conf 886688787035667767--653376
No 478
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.06 E-value=0.37 Score=28.64 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=19.3
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHH
Q ss_conf 706201078798888999999999
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARS 44 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~ 44 (369)
+-..+++||.|+||+++-+++|.-
T Consensus 29 Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 854887678876688999999813
No 479
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=93.04 E-value=0.39 Score=28.53 Aligned_cols=129 Identities=15% Similarity=0.168 Sum_probs=59.7
Q ss_pred EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHH
Q ss_conf 062010787988889999999996146877788665878999779999779877822245332233455566-5554456
Q 537021.9.peg.4 22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVRE-IIDQIYY 100 (369)
Q Consensus 22 ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~-l~~~~~~ 100 (369)
.+.|+.||.|.|||++-..|. .-..... .+..+|+. +.... -..+....++ |-- |=+..|. +.+...+
T Consensus 4 ptvLllGl~~sGKT~Lf~~L~---~~~~~~T-~tS~~~n~-~~~~~-~~~~~~~~lv--D~P---Gh~klR~~~~~~~~~ 72 (181)
T pfam09439 4 PAVIIAGLCDSGKTSLFTLLT---TGSVRKT-VTSQEPSA-AYKYM-NNKGNSLTLI--DFP---GHVKLRYKLLETLKD 72 (181)
T ss_pred CEEEEECCCCCCHHHHHHHHH---CCCCCCE-ECCCCCCC-EEEEE-CCCCCEEEEE--ECC---CCHHHHHHHHHHHHH
T ss_conf 869998689998999999997---5994875-88867864-06875-1689668999--889---968999999986430
Q ss_pred HHHCCCCCEEEEECH-H--HCCCCHHHHHHHHHH---HCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 542046523775115-6--648001678999997---2122111466506754330356754333210245400135678
Q 537021.9.peg.4 101 KPISARFRVYIMDEV-Q--MLSTAAFNGLLKTLE---EPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELF 174 (369)
Q Consensus 101 ~p~~~~~kv~iid~a-~--~m~~~a~NaLLK~lE---EPp~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L 174 (369)
++ ..+-=||++|.+ + .+ .+++.-|--.|- --+..+-++++||-.+. |...+...|...|
T Consensus 73 ~~-~~~gIVfVVDS~~~~~~l-~~~Ae~Ly~iL~~~~~~~~~vPvLI~cNKqDl-------------~~A~~~~~Ik~~L 137 (181)
T pfam09439 73 SS-SLRGLVFVVDSTAFPKEV-TDTAEFLYDILSITELLKNGIDILIACNKQEI-------------FTARPPKKIKQAL 137 (181)
T ss_pred HC-CCEEEEEEEECCCCHHHH-HHHHHHHHHHHHCHHHCCCCCCEEEEEECCCC-------------CCCCCHHHHHHHH
T ss_conf 02-644999999786656679-99999999998445433689978999737463-------------3577999999999
Q ss_pred HH
Q ss_conf 76
Q 537021.9.peg.4 175 TK 176 (369)
Q Consensus 175 ~~ 176 (369)
++
T Consensus 138 Ek 139 (181)
T pfam09439 138 EK 139 (181)
T ss_pred HH
T ss_conf 99
No 480
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=93.03 E-value=0.26 Score=29.77 Aligned_cols=54 Identities=33% Similarity=0.486 Sum_probs=35.7
Q ss_pred CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCC----CCCCCCCC
Q ss_conf 67062010787988889999999996146877788665878999779999779----87782224
Q 537021.9.peg.4 20 IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRG----NHVDVVEL 80 (369)
Q Consensus 20 ~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~----~~~d~~e~ 80 (369)
.+-..++.|+=|.||||++|.+|+.|.- ......||-..- +....+ .|.|++.+
T Consensus 24 ~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~-~~~V~SPTFtlv------~~Y~~~~~~lyH~DlYRl 81 (149)
T COG0802 24 AGDVVLLSGDLGAGKTTLVRGIAKGLGV-DGNVKSPTFTLV------EEYEEGRLPLYHFDLYRL 81 (149)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC-CCCCCCCCEEEE------HHHCCCCCCEEEEEEECC
T ss_conf 9988999778768859999999997499-975249876101------211379987799861125
No 481
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=93.02 E-value=0.23 Score=30.26 Aligned_cols=127 Identities=18% Similarity=0.262 Sum_probs=63.4
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC---------CCC----CCHH
Q ss_conf 620107879888899999999961468777886658789997799997798778222453---------322----3345
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDA---------ASH----TSID 89 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~---------~s~----~~id 89 (369)
+.=+-|+.|.||+|+-+++|..+-=..+. +.-.|.-.+-..+..|=+|++...+. -++ -++|
T Consensus 55 ~vGiiG~NGaGKSTLlkliaGi~~Pt~G~-----v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~lG~~~~ei~~~~~ 129 (249)
T COG1134 55 RVGIIGHNGAGKSTLLKLIAGIYKPTSGK-----VKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVD 129 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCE-----EEECCEEEHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99898789985899999995871798825-----9981467056441567785420587899999984666999998889
Q ss_pred HHHH---HHHHHH--HHH--------------HCCCCCEEEEECHHHCC-CCHHHHHHHHHHHC-CCCCCEEEEECCCCC
Q ss_conf 5566---555445--654--------------20465237751156648-00167899999721-221114665067543
Q 537021.9.peg.4 90 DVRE---IIDQIY--YKP--------------ISARFRVYIMDEVQMLS-TAAFNGLLKTLEEP-PPHVKFIFATTEIRK 148 (369)
Q Consensus 90 ~ir~---l~~~~~--~~p--------------~~~~~kv~iid~a~~m~-~~a~NaLLK~lEEP-p~~~~fil~t~~~~~ 148 (369)
+|-+ |-+++. .+. ..-..-|+|+||+=.-- .+-+..=++-++|. -.+..+||++++.+
T Consensus 130 eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~- 208 (249)
T COG1134 130 EIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG- 208 (249)
T ss_pred HHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-
T ss_conf 9999987788761744112588999988875331378789986134407799999999999999975987999978879-
Q ss_pred CCHHHHHHHH
Q ss_conf 3035675433
Q 537021.9.peg.4 149 IPITVLSRCQ 158 (369)
Q Consensus 149 ll~TI~SRcq 158 (369)
+|++=|-
T Consensus 209 ---~I~~~Cd 215 (249)
T COG1134 209 ---AIKQYCD 215 (249)
T ss_pred ---HHHHHCC
T ss_conf ---9998567
No 482
>PHA02244 ATPase-like protein
Probab=92.98 E-value=0.1 Score=32.71 Aligned_cols=31 Identities=29% Similarity=0.490 Sum_probs=25.7
Q ss_pred HHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 998287670620107879888899999999961
Q 537021.9.peg.4 14 AFKSGRIAQSYMLSGTRGIGKTTTARIIARSLN 46 (369)
Q Consensus 14 ~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~ 46 (369)
.+.+..+|- || +||.|+|||++|.-.|++|.
T Consensus 114 ~~v~~nipV-~L-~G~AGsGKt~~A~qIA~aLd 144 (383)
T PHA02244 114 KIVNANIPV-FL-KGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred HHHHCCCCE-EE-ECCCCCCHHHHHHHHHHHHC
T ss_conf 987359856-99-75888863489999999858
No 483
>PRK10646 putative ATPase; Provisional
Probab=92.97 E-value=0.27 Score=29.67 Aligned_cols=101 Identities=18% Similarity=0.123 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHCC-CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 9999999999828-767062010787988889999999996146877788665878999779999779877822245332
Q 537021.9.peg.4 6 PMIKTLTNAFKSG-RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAAS 84 (369)
Q Consensus 6 ~~~~~l~~~~~~~-~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s 84 (369)
.....|-+.+... +-+-..++.|+=|.|||+++|.+++++-+.. ....|+...+..-..-. ..-.|.|++.++..
T Consensus 12 ~~T~~lg~~la~~l~~g~vi~L~G~LGaGKTtf~r~i~~~lg~~~-~V~SPTf~lv~~Y~~~~--~~~~H~DlYRl~~~- 87 (153)
T PRK10646 12 QATLDLGERVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGHQG-NVKSPTYTLVEPYTLDN--LMVYHFDLYRLADP- 87 (153)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCCCCEEEEEEECCCC--CEEEEEEEECCCCH-
T ss_conf 999999999997689997999988887899999999999849978-62699764799732899--33899985346998-
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHC
Q ss_conf 2334555665554456542046523775115664
Q 537021.9.peg.4 85 HTSIDDVREIIDQIYYKPISARFRVYIMDEVQML 118 (369)
Q Consensus 85 ~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m 118 (369)
+++.++- +.-+-...-|++|+=++++
T Consensus 88 ----~e~~~lg----~~e~~~~~~i~lIEWpe~~ 113 (153)
T PRK10646 88 ----EELEFMG----IRDYFANDAICLVEWPQQG 113 (153)
T ss_pred ----HHHHHCC----CHHHHCCCCEEEEECCCCC
T ss_conf ----8998778----7888579969999897651
No 484
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=92.96 E-value=0.081 Score=33.55 Aligned_cols=23 Identities=43% Similarity=0.530 Sum_probs=18.6
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 62010787988889999999996
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l 45 (369)
.+-+-||.|+||||+.++++-.+
T Consensus 52 ivgllG~NGaGKSTLlk~I~Gl~ 74 (264)
T PRK13546 52 VIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999899861999999996798
No 485
>KOG0924 consensus
Probab=92.95 E-value=0.46 Score=27.95 Aligned_cols=121 Identities=27% Similarity=0.354 Sum_probs=56.6
Q ss_pred HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH------HHHHHC--C-CCCC-C-
Q ss_conf 999999982876706201078798888999999999614687778866587899977------999977--9-8778-2-
Q 537021.9.peg.4 9 KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEH------CQAIIR--G-NHVD-V- 77 (369)
Q Consensus 9 ~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~------c~~i~~--~-~~~d-~- 77 (369)
..|-+.|+.|+ ..++.|..|+||||- +|+.|. +++-.+.- .-.|-+-.. .+++.. | ..-| |
T Consensus 362 ~~ll~~ir~n~---vvvivgETGSGKTTQ---l~QyL~-edGY~~~G-mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VG 433 (1042)
T KOG0924 362 DQLLSVIRENQ---VVVIVGETGSGKTTQ---LAQYLY-EDGYADNG-MIGCTQPRRVAAISVAKRVAEEMGVTLGDTVG 433 (1042)
T ss_pred HHHHHHHHHCC---EEEEEECCCCCCHHH---HHHHHH-HCCCCCCC-EEEECCCHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99999986385---799993588985016---679998-62245587-15435722789999999999985876453112
Q ss_pred CCC---CCCC-CCCH----HH--HHHHHHHHHHHHHCCCCCEEEEECHHH--CCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf 224---5332-2334----55--566555445654204652377511566--480016789999972122111466
Q 537021.9.peg.4 78 VEL---DAAS-HTSI----DD--VREIIDQIYYKPISARFRVYIMDEVQM--LSTAAFNGLLKTLEEPPPHVKFIF 141 (369)
Q Consensus 78 ~e~---~~~s-~~~i----d~--ir~l~~~~~~~p~~~~~kv~iid~a~~--m~~~a~NaLLK~lEEPp~~~~fil 141 (369)
+-| |-.| +++| |- .|+.+.+-. --+|.|+|+||||. +|.+--=.|||.+=---.+...|.
T Consensus 434 YsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~----L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliV 505 (1042)
T KOG0924 434 YSIRFEDVTSEDTKIKYMTDGILLRESLKDRD----LDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIV 505 (1042)
T ss_pred EEEEEEECCCCCEEEEEECCCHHHHHHHHHHH----HHHEEEEEECHHHHCCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 48885204787605787423057797763300----4440178851143303005899999999987422635997
No 486
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family; InterPro: IPR004346 This family includes the Helicobacter pylori protein CagE (see examples), which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration . Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro . Similar type IV transport systems are also found in other bacteria. This family includes proteins from the trb and Vir conjugal transfer systems in Agrobacterium tumefaciens and homologues of VirB proteins from other species.; GO: 0005524 ATP binding.
Probab=92.90 E-value=0.25 Score=29.94 Aligned_cols=98 Identities=18% Similarity=0.257 Sum_probs=61.0
Q ss_pred HHHHHHHHHHCC--CCCEEEEECHHHC-----CCCHHHHHHHHHHHCCCCCCEEEEECCC-CCC-----CHHHHHHH-HH
Q ss_conf 555445654204--6523775115664-----8001678999997212211146650675-433-----03567543-33
Q 537021.9.peg.4 94 IIDQIYYKPISA--RFRVYIMDEVQML-----STAAFNGLLKTLEEPPPHVKFIFATTEI-RKI-----PITVLSRC-QR 159 (369)
Q Consensus 94 l~~~~~~~p~~~--~~kv~iid~a~~m-----~~~a~NaLLK~lEEPp~~~~fil~t~~~-~~l-----l~TI~SRc-q~ 159 (369)
|...+.- -..| ++.|++||||+.+ =.+..+..|||+=+ .|.++||+|.+| +.+ ..||++=| +.
T Consensus 741 Lf~Ri~~-~~dg~~r~~~~~~DEaw~~l~~p~~~~~i~~~l~t~RK--~NG~~v~ATQ~~Y~d~~~s~i~~~~~~~~~T~ 817 (931)
T TIGR00929 741 LFHRIEE-ALDGSNRRFLIVIDEAWKLLGDPVFAAKIKDWLKTLRK--ANGIVVLATQSIYNDALESRIADTLIEQCATK 817 (931)
T ss_pred HHHHHHH-HHCCCCCCEEEEEECCHHHHCCHHHHHHHHHHHHHHHH--HCCEEEEECCHHHHHHHCCCHHHHHHHHCCCE
T ss_conf 9999999-72413586799851305332690789999999875766--09779863001477763154246889615834
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHH-CCCC
Q ss_conf 2102454001356787643101345-62566445653-1676
Q 537021.9.peg.4 160 FDLHRISIGDLIELFTKILQEESIE-FDPEAVAMIAR-ASDG 199 (369)
Q Consensus 160 ~~f~~l~~~~i~~~L~~i~~~E~i~-~d~~~l~~ia~-~s~G 199 (369)
|-|+.... ....+.. .=++. +++.-.+.|.+ .+..
T Consensus 818 I~lPn~~a-~~~dy~~----~f~~~glte~E~~~l~~~~~~~ 854 (931)
T TIGR00929 818 IFLPNPKA-DREDYAE----GFGIKGLTEREFELLKSATPEE 854 (931)
T ss_pred EECCCCCC-CHHHHHH----HCCCCCCCHHHHHHHHHHCCCC
T ss_conf 32488456-8589998----5588897989999998525701
No 487
>PRK12338 hypothetical protein; Provisional
Probab=92.90 E-value=0.15 Score=31.58 Aligned_cols=117 Identities=18% Similarity=0.274 Sum_probs=58.9
Q ss_pred CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCC-----CCCCCCC--------CCCC--
Q ss_conf 767062010787988889999999996146877788665878999779999779-----8778222--------4533--
Q 537021.9.peg.4 19 RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRG-----NHVDVVE--------LDAA-- 83 (369)
Q Consensus 19 ~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~-----~~~d~~e--------~~~~-- 83 (369)
|-|-..|+.|..||||+|+|..+|..|.-.+-- ..++-|.+..+ -.|-++. +...
T Consensus 2 r~PliILiGGtSGvGKSTlAseLAsRLgI~tvI----------sTDsIRevmR~~is~e~~P~L~~STY~A~~~Lr~~~~ 71 (320)
T PRK12338 2 RKPYVILIGSASGIGKSTIASEVARRLNIKHLI----------ETDFIREVVRGIIGKEYAPALHMSSYNAYTALRDKDH 71 (320)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEE----------CCHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHCCCCC
T ss_conf 976799970688876888999999851987110----------3347999999833804153455420267887267423
Q ss_pred -CCCCH---------HHHHHH---HHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHH-HCCCCCCEEEEECCCCCC
Q ss_conf -22334---------555665---5544565420465237751156648001678999997-212211146650675433
Q 537021.9.peg.4 84 -SHTSI---------DDVREI---IDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLE-EPPPHVKFIFATTEIRKI 149 (369)
Q Consensus 84 -s~~~i---------d~ir~l---~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lE-EPp~~~~fil~t~~~~~l 149 (369)
.+.+. +|.--+ ++.+ ..-...++.=+||+.+|-.. .|.+.++ .+|....|+.++.+-++=
T Consensus 72 ~~~~~~~~~vi~Gfe~q~e~V~~~le~v-I~r~~~~~~sivIEGVHLvP-----gfi~~~~~~~~~~i~F~i~~~~E~kH 145 (320)
T PRK12338 72 FVPKRFEELVIAGFEEHASFVIPAIEKV-IKRAVTDADDIVIEGVHLVP-----GLINIEQFYEYANIHFFILYADEEEH 145 (320)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCCEEEEEEEECH-----HHCCHHHHCCCCCCEEEEEECCHHHH
T ss_conf 5774116789999999989999999999-99998648867998453055-----55057662266663699998176899
Q ss_pred CH
Q ss_conf 03
Q 537021.9.peg.4 150 PI 151 (369)
Q Consensus 150 l~ 151 (369)
..
T Consensus 146 ~e 147 (320)
T PRK12338 146 KE 147 (320)
T ss_pred HH
T ss_conf 99
No 488
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=92.89 E-value=0.29 Score=29.50 Aligned_cols=29 Identities=31% Similarity=0.496 Sum_probs=21.7
Q ss_pred CCCCCEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 28767062010787988889999999996
Q 537021.9.peg.4 17 SGRIAQSYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 17 ~~~~~ha~lf~G~~G~GK~~~a~~~A~~l 45 (369)
+.+-|.-|||.|=-|+||||+-=-+|+.+
T Consensus 78 ~~~kp~Vil~VGVNG~GKTTTIaKLA~~l 106 (284)
T TIGR00064 78 EEKKPNVILFVGVNGVGKTTTIAKLANKL 106 (284)
T ss_pred CCCCCEEEEEEEEECCCHHHHHHHHHHHH
T ss_conf 47897799998440886010288999999
No 489
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=92.89 E-value=0.26 Score=29.77 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=29.3
Q ss_pred HHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 999998287670620107879888899999999961
Q 537021.9.peg.4 11 LTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLN 46 (369)
Q Consensus 11 l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~ 46 (369)
|.+.+..-.-|--.|+-|..|+||+|+|-.+|..|.
T Consensus 252 lwR~ir~~~~PiiILIGGaSGvGKSTlAseLA~RLG 287 (492)
T PRK12337 252 LLRVLRKPPRPLHVLLGGVSGTGKSVLAAELAYRLG 287 (492)
T ss_pred HHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999973568876999607888668889999999609
No 490
>KOG3354 consensus
Probab=92.88 E-value=0.89 Score=25.84 Aligned_cols=128 Identities=16% Similarity=0.185 Sum_probs=65.9
Q ss_pred CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 87670620107879888899999999961468777886658789997799997798778222453322334555665554
Q 537021.9.peg.4 18 GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQ 97 (369)
Q Consensus 18 ~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~ 97 (369)
+..+-+++.-|+.|+||+|++.+++..|-|.--+.+. ...-.+-.++..|.-.+ .+-.......+...
T Consensus 9 ~~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd-----~Hp~~NveKM~~GipLn-------D~DR~pWL~~i~~~ 76 (191)
T KOG3354 9 GPFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDD-----LHPPANVEKMTQGIPLN-------DDDRWPWLKKIAVE 76 (191)
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCC-----CCCHHHHHHHHCCCCCC-------CCCCCHHHHHHHHH
T ss_conf 7776059998358877445999999985886245555-----79878899883699888-------53211799999999
Q ss_pred HHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHH------HCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 4565420465237751156648001678999997------21221114665067543303567543332
Q 537021.9.peg.4 98 IYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLE------EPPPHVKFIFATTEIRKIPITVLSRCQRF 160 (369)
Q Consensus 98 ~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lE------EPp~~~~fil~t~~~~~ll~TI~SRcq~~ 160 (369)
+...-. .+..|++--.| +-+.--.-|.-.++ -|.....||+..-+.+-|+.-..||--||
T Consensus 77 ~~~~l~-~~q~vVlACSa--LKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHF 142 (191)
T KOG3354 77 LRKALA-SGQGVVLACSA--LKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHF 142 (191)
T ss_pred HHHHHH-CCCEEEEEHHH--HHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCC
T ss_conf 998763-27818997288--8899999997321147866786405888633042999999984066666
No 491
>KOG0354 consensus
Probab=92.86 E-value=0.9 Score=25.82 Aligned_cols=146 Identities=14% Similarity=0.113 Sum_probs=75.2
Q ss_pred HHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCC----CCCCCCCCCCHHHHHHHCCCCCCCC-CCCC-CCCCCH
Q ss_conf 982876706201078798888999999999614687778----8665878999779999779877822-2453-322334
Q 537021.9.peg.4 15 FKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHID----VPTVEFEGFGEHCQAIIRGNHVDVV-ELDA-ASHTSI 88 (369)
Q Consensus 15 ~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~----~~~~~~c~~c~~c~~i~~~~~~d~~-e~~~-~s~~~i 88 (369)
+..-.+.+--|.+=|.|.|||-.|-..++-.+-.-+... .|+.-.-++-..|..+.-.. ..+. +..+ .+..+.
T Consensus 70 ivq~ALgkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~-~~~T~~l~~~~~~~~r 148 (746)
T KOG0354 70 LVQPALGKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIP-YSVTGQLGDTVPRSNR 148 (746)
T ss_pred HHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCC-CCCEEECCCCCCCCCH
T ss_conf 867862687699953599861047999999972377643899607711788889887620676-0104550575688762
Q ss_pred HHH-H---------HHHHHHHHHHH---CCCCCEEEEECHHHCCCCHH--HHHHHHHHHCCCCCCEEEEECCCCCCCHHH
Q ss_conf 555-6---------65554456542---04652377511566480016--789999972122111466506754330356
Q 537021.9.peg.4 89 DDV-R---------EIIDQIYYKPI---SARFRVYIMDEVQMLSTAAF--NGLLKTLEEPPPHVKFIFATTEIRKIPITV 153 (369)
Q Consensus 89 d~i-r---------~l~~~~~~~p~---~~~~kv~iid~a~~m~~~a~--NaLLK~lEEPp~~~~fil~t~~~~~ll~TI 153 (369)
.++ . +++++--..+. -+.+..+||||||+=+.+.+ |--...++-+-.+-..|-.|..|++=..-+
T Consensus 149 ~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG~~~~~v 228 (746)
T KOG0354 149 GEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQILGLTASPGSKLEQV 228 (746)
T ss_pred HHHHCCCCEEEECHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHH
T ss_conf 45310263589672763433254334545517999972224455566179999999986514661799855888458999
Q ss_pred HHHHHHHH
Q ss_conf 75433321
Q 537021.9.peg.4 154 LSRCQRFD 161 (369)
Q Consensus 154 ~SRcq~~~ 161 (369)
+.=|--+.
T Consensus 229 ~~~I~~L~ 236 (746)
T KOG0354 229 QNVIDNLC 236 (746)
T ss_pred HHHHHHHH
T ss_conf 99998520
No 492
>PRK00889 adenylylsulfate kinase; Provisional
Probab=92.83 E-value=0.095 Score=33.01 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=22.3
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 70620107879888899999999961
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARSLN 46 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~l~ 46 (369)
+..+-|+|.+|+||||+|+.+.+.|.
T Consensus 4 g~viWltGlsgSGKTTia~~l~~~L~ 29 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTISHALAEKLR 29 (175)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 88999889899999999999999999
No 493
>PRK08506 replicative DNA helicase; Provisional
Probab=92.81 E-value=0.32 Score=29.11 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=20.2
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 7062010787988889999999996
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~l 45 (369)
+.-+++.|-||.|||++|.-+|...
T Consensus 193 gdLiIIAARPsmGKTAfAlniA~~~ 217 (473)
T PRK08506 193 GDLIIIAARPSMGKTTLVLNMVLKA 217 (473)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 6279995079986789999999999
No 494
>PRK05748 replicative DNA helicase; Provisional
Probab=92.73 E-value=0.34 Score=28.93 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=17.6
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHH
Q ss_conf 706201078798888999999999
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARS 44 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~ 44 (369)
++-+++.|.||.|||++|.-+|..
T Consensus 203 g~LiviaaRP~mGKTa~alnia~~ 226 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFALNIAQN 226 (448)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 737999847998768999999999
No 495
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.69 E-value=0.94 Score=25.66 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=20.5
Q ss_pred HHCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 0107879888899999999961468
Q 537021.9.peg.4 25 MLSGTRGIGKTTTARIIARSLNYKT 49 (369)
Q Consensus 25 lf~G~~G~GK~~~a~~~A~~l~c~~ 49 (369)
++.||+|+||+.+|.-+|-++-+-.
T Consensus 5 ~l~g~gG~GKS~lal~lAl~vA~G~ 29 (239)
T cd01125 5 ALVAPGGTGKSSLLLVLALAMALGK 29 (239)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf 9980899888999999999997599
No 496
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=92.68 E-value=0.16 Score=31.42 Aligned_cols=39 Identities=36% Similarity=0.486 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHH-HHHHHHHHH
Q ss_conf 48999999999982876706201078798888-999999999
Q 537021.9.peg.4 4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKT-TTARIIARS 44 (369)
Q Consensus 4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~-~~a~~~A~~ 44 (369)
|..+++.|.+.+..|.=. ..+-|-.|+||| |+|...|+.
T Consensus 14 QP~AI~~L~~~l~~G~~~--QtLLGvTGsGKTFT~AnVIa~~ 53 (667)
T TIGR00631 14 QPKAIAKLVEGLEAGEKE--QTLLGVTGSGKTFTMANVIAQV 53 (667)
T ss_pred HHHHHHHHHHHHHCCCCC--EEEEEEECCCHHHHHHHHHHHH
T ss_conf 189999999998568871--4785321486278898999984
No 497
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=92.63 E-value=0.54 Score=27.43 Aligned_cols=147 Identities=16% Similarity=0.177 Sum_probs=70.4
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHHHCCCC-CCCCCCCCCCCC-CCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 70620107879888899999999961468-777886658789-9977999977987782224533223345556655544
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARSLNYKT-AHIDVPTVEFEG-FGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQI 98 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~-~~~~~~~~~~c~-~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~ 98 (369)
.| +++.|.||+||||+-..||..+.-.. ...+.|...-|. .-..|+....-+.-|++.....++..+.+...-. -
T Consensus 223 ~~-~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~--~ 299 (824)
T COG5635 223 AK-LLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIAKQLIEAH--Q 299 (824)
T ss_pred HH-EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHH--H
T ss_conf 23-33446888762679999999974152566567734442315654444521649999999985146765004689--9
Q ss_pred HHHHHCCCCCEEEEECHHHCCCCHHHHHHH----HHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 565420465237751156648001678999----9972122111466506754330356754333210245400135678
Q 537021.9.peg.4 99 YYKPISARFRVYIMDEVQMLSTAAFNGLLK----TLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELF 174 (369)
Q Consensus 99 ~~~p~~~~~kv~iid~a~~m~~~a~NaLLK----~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L 174 (369)
.-...+.-.+++|..|-|-.+..++..+ .+-+.| ++.||++| .++-- ......-..+...+..+..|.+.+
T Consensus 300 --e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~~-~~~~iltc-R~~~~-~~~~~~f~~~ei~~~~~~~i~~~~ 374 (824)
T COG5635 300 --ELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEYP-DAQVLLTC-RPDTY-KEEFKGFAVFEIYKFLDLQINQFI 374 (824)
T ss_pred --HHHHCCCEEEECCCCCHHCCCCHHHHHHHHHHHHHCCC-CCCEEEEE-CCCCC-HHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf --99842775764033330122333789999987753057-77279982-66310-215654323102424478899899
Q ss_pred H
Q ss_conf 7
Q 537021.9.peg.4 175 T 175 (369)
Q Consensus 175 ~ 175 (369)
.
T Consensus 375 ~ 375 (824)
T COG5635 375 L 375 (824)
T ss_pred H
T ss_conf 9
No 498
>PRK08840 replicative DNA helicase; Provisional
Probab=92.56 E-value=0.63 Score=26.97 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=18.7
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHH
Q ss_conf 706201078798888999999999
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARS 44 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~ 44 (369)
++-+++.|.||.|||++|.-+|..
T Consensus 217 G~LiviaaRPsmGKTalalnia~n 240 (464)
T PRK08840 217 SDLIIVAARPSMGKTTFAMNLCEN 240 (464)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 767999837987368999999999
No 499
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=92.54 E-value=0.39 Score=28.50 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=18.7
Q ss_pred EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 62010787988889999999996
Q 537021.9.peg.4 23 SYMLSGTRGIGKTTTARIIARSL 45 (369)
Q Consensus 23 a~lf~G~~G~GK~~~a~~~A~~l 45 (369)
.+-+.||.|+||||+++.++..+
T Consensus 39 ~v~iiG~nGsGKSTL~r~l~gl~ 61 (281)
T PRK13633 39 FLVILGHNGSGKSTIAKHMNALL 61 (281)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999984999999997588
No 500
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.54 E-value=0.48 Score=27.85 Aligned_cols=117 Identities=15% Similarity=0.142 Sum_probs=0.0
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC-----CCCCCHHHHHHHCCCCC---CCCCCCCCCCCCHHHHHHHH
Q ss_conf 20107879888899999999961468777886658-----78999779999779877---82224533223345556655
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVE-----FEGFGEHCQAIIRGNHV---DVVELDAASHTSIDDVREII 95 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~-----~c~~c~~c~~i~~~~~~---d~~e~~~~s~~~id~ir~l~ 95 (369)
+.+.||.|+||||+.+..-............+... ..++...-..+.-+..+ .+..+++--+-.|.=.|.|.
T Consensus 24 ~~iiG~nGsGKSTLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~LSGGqkQRvaiAraL~ 103 (176)
T cd03238 24 VVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELF 103 (176)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCHHHCCHHHCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999989999998887610311203210137553688577999997488667789916868999999999999998
Q ss_pred HHHHHHHHCCCCCEEEEECH-HHCCCCHHHHHHHHHHH-CCCCCCEEEEECCCC
Q ss_conf 54456542046523775115-66480016789999972-122111466506754
Q 537021.9.peg.4 96 DQIYYKPISARFRVYIMDEV-QMLSTAAFNGLLKTLEE-PPPHVKFIFATTEIR 147 (369)
Q Consensus 96 ~~~~~~p~~~~~kv~iid~a-~~m~~~a~NaLLK~lEE-Pp~~~~fil~t~~~~ 147 (369)
...+..|+|+||. -.|-..+...+++.+.+ --.+...|++|++++
T Consensus 104 -------~~p~~~ililDEPtsgLD~~~~~~l~~~l~~l~~~g~TvI~vtHd~~ 150 (176)
T cd03238 104 -------SEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD 150 (176)
T ss_pred -------HCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf -------68998689971774458987999999999999987998999947879
Done!