Query         537021.9.peg.472_1
Match_columns 369
No_of_seqs    206 out of 4494
Neff          8.6 
Searched_HMMs 39220
Date          Tue May 24 22:52:21 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_472.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR02397 dnaX_nterm DNA polym 100.0       0       0  812.6  25.7  341    1-346    16-363 (363)
  2 PRK09111 DNA polymerase III su 100.0       0       0  753.5  31.7  365    1-365    25-390 (600)
  3 PRK05563 DNA polymerase III su 100.0       0       0  724.8  31.0  361    1-365    18-378 (541)
  4 PRK06645 DNA polymerase III su 100.0       0       0  715.4  28.8  360    1-362    23-385 (507)
  5 PRK06647 DNA polymerase III su 100.0       0       0  705.0  30.1  359    1-366    18-376 (560)
  6 PRK06305 DNA polymerase III su 100.0       0       0  704.4  30.4  347    1-364    19-365 (462)
  7 PRK06674 DNA polymerase III su 100.0       0       0  701.3  30.1  358    1-363    18-380 (563)
  8 PRK12323 DNA polymerase III su 100.0       0       0  698.4  28.2  347    1-350    18-365 (721)
  9 PRK07764 DNA polymerase III su 100.0       0       0  690.2  30.6  360    1-364    17-381 (775)
 10 PRK05648 DNA polymerase III su 100.0       0       0  690.8  27.4  343    1-350    18-360 (705)
 11 PRK07994 DNA polymerase III su 100.0       0       0  688.9  27.9  344    1-350    18-361 (643)
 12 PRK08691 DNA polymerase III su 100.0       0       0  689.6  26.9  343    1-350    18-360 (704)
 13 PRK08770 DNA polymerase III su 100.0       0       0  684.5  27.6  341    1-350    18-358 (663)
 14 PRK08853 DNA polymerase III su 100.0       0       0  685.3  26.6  343    1-350    18-360 (717)
 15 PRK07003 DNA polymerase III su 100.0       0       0  684.4  27.1  343    1-350    18-360 (816)
 16 PRK06872 DNA polymerase III su 100.0       0       0  680.2  27.5  339    1-350    18-356 (696)
 17 PRK07270 DNA polymerase III su 100.0       0       0  676.0  29.2  339    1-351    17-356 (557)
 18 COG2812 DnaX DNA polymerase II 100.0       0       0  666.7  25.5  344    1-350    18-362 (515)
 19 PRK08451 DNA polymerase III su 100.0       0       0  663.6  27.1  338    1-366    16-353 (523)
 20 PRK07133 DNA polymerase III su 100.0       0       0  632.8  25.4  338    1-350    20-357 (718)
 21 PRK05896 DNA polymerase III su 100.0       0       0  626.5  26.2  344    1-348    18-363 (613)
 22 PRK07940 DNA polymerase III su 100.0       0       0  555.3  26.9  334    1-347     7-394 (395)
 23 PRK08058 DNA polymerase III su 100.0       0       0  542.3  27.9  316    1-346     7-327 (329)
 24 PRK05564 DNA polymerase III su 100.0       0       0  514.8  25.6  305    1-347     6-312 (313)
 25 PRK05707 DNA polymerase III su 100.0       0       0  497.2  28.1  309   12-350    13-326 (328)
 26 PRK07993 DNA polymerase III su 100.0       0       0  466.9  28.2  311    4-349     7-323 (334)
 27 PRK06871 DNA polymerase III su 100.0       0       0  465.1  28.4  312    4-348     6-321 (324)
 28 PRK07471 DNA polymerase III su 100.0       0       0  465.3  26.6  326    1-348    19-361 (363)
 29 PRK06964 DNA polymerase III su 100.0       0       0  463.6  27.5  306    4-348     6-340 (342)
 30 PRK09112 DNA polymerase III su 100.0       0       0  454.1  25.8  311    1-349    25-349 (352)
 31 PRK08699 DNA polymerase III su 100.0       0       0  446.2  28.2  307    4-350     6-322 (325)
 32 PRK12402 replication factor C  100.0       0       0  442.3  22.6  315    1-345    17-336 (337)
 33 PRK07399 DNA polymerase III su 100.0       0       0  429.0  21.0  284    1-348     6-313 (314)
 34 PRK07276 DNA polymerase III su 100.0       0       0  424.2  23.2  281    4-343     7-290 (290)
 35 PRK06090 DNA polymerase III su 100.0       0       0  416.5  27.3  302    4-346     8-314 (319)
 36 TIGR00678 holB DNA polymerase  100.0       0       0  437.7  11.7  188    9-204     2-216 (216)
 37 PRK08769 DNA polymerase III su 100.0       0       0  420.3  23.0  298    4-354     9-315 (319)
 38 PRK00440 rfc replication facto 100.0       0       0  410.8  23.8  296    1-349    18-316 (318)
 39 PRK05917 DNA polymerase III su 100.0       0       0  398.7  20.7  275    4-351     2-279 (290)
 40 KOG0989 consensus              100.0       0       0  384.6  18.8  307    1-329    38-345 (346)
 41 PRK07132 DNA polymerase III su 100.0       0       0  374.3  21.2  297    4-347     3-300 (303)
 42 PRK05818 DNA polymerase III su 100.0       0       0  380.9  15.8  250   20-275     7-262 (262)
 43 COG0470 HolB ATPase involved i 100.0 4.6E-42       0  330.5  18.7  199    1-215     3-206 (325)
 44 PRK13342 recombination factor  100.0 6.3E-40 1.5E-44  314.7  20.4  241    1-274    15-277 (417)
 45 KOG0991 consensus              100.0 7.4E-40 1.8E-44  314.2  20.6  299    1-352    29-330 (333)
 46 PRK04195 replication factor C  100.0 3.6E-35 9.2E-40  279.6  16.7  235    1-270    16-262 (403)
 47 PRK13341 recombination factor  100.0 1.7E-32 4.4E-37  259.8  22.3  241    1-273    30-299 (726)
 48 COG2256 MGS1 ATPase related to 100.0 1.2E-32   3E-37  261.1  19.6  243    1-275    26-292 (436)
 49 pfam05496 RuvB_N Holliday junc 100.0 6.8E-33 1.7E-37  262.8  10.6  182    1-217    26-231 (234)
 50 KOG0990 consensus              100.0 1.4E-31 3.7E-36  253.0  10.8  255    1-279    43-309 (360)
 51 PRK06581 DNA polymerase III su 100.0 1.1E-29 2.7E-34  239.2   7.6  142    7-169     1-152 (263)
 52 PRK04132 replication factor C  100.0 1.5E-27 3.8E-32  223.4  15.3  210  112-350   651-861 (863)
 53 KOG2035 consensus               99.9 1.9E-25   5E-30  207.8  17.0  311    1-346    15-340 (351)
 54 KOG2028 consensus               99.9 7.8E-25   2E-29  203.4  16.7  316    1-346   140-506 (554)
 55 PRK05574 holA DNA polymerase I  99.9 1.2E-23   3E-28  194.7  20.2  310   10-346     6-335 (336)
 56 PRK07452 DNA polymerase III su  99.9 1.7E-23 4.5E-28  193.4  20.8  304   20-350     1-326 (326)
 57 PRK05629 hypothetical protein;  99.9 8.1E-23 2.1E-27  188.5  21.2  305   21-350    16-330 (331)
 58 PRK07914 hypothetical protein;  99.9 5.4E-19 1.4E-23  160.3  20.3  301   20-349     4-317 (320)
 59 PRK06585 holA DNA polymerase I  99.8 2.6E-18 6.7E-23  155.2  21.6  312   11-351     9-340 (343)
 60 pfam12169 DNA_pol3_gamma3 DNA   99.8 2.3E-19 5.8E-24  163.0  15.5  143  219-361     1-143 (143)
 61 PRK08487 DNA polymerase III su  99.8 1.1E-16 2.9E-21  143.2  23.1  306    9-348     4-325 (328)
 62 TIGR02902 spore_lonB ATP-depen  99.8 4.3E-19 1.1E-23  161.0   7.5  199    1-224    67-325 (532)
 63 COG1466 HolA DNA polymerase II  99.8 3.8E-16 9.7E-21  139.2  21.7  311   10-348     5-332 (334)
 64 TIGR02903 spore_lon_C ATP-depe  99.8 9.9E-19 2.5E-23  158.3   8.3  182    1-209   157-397 (616)
 65 PRK00080 ruvB Holliday junctio  99.8 8.4E-18 2.1E-22  151.5  11.6  179    1-214    27-229 (328)
 66 PRK04132 replication factor C   99.7   2E-18 5.1E-23  156.0   5.9  133    1-157    27-161 (863)
 67 TIGR00635 ruvB Holliday juncti  99.7 1.4E-16 3.7E-21  142.4   9.7  174    2-210     7-204 (305)
 68 PRK08485 DNA polymerase III su  99.6 1.1E-15 2.8E-20  135.8   6.5   76   84-162    34-109 (204)
 69 COG2255 RuvB Holliday junction  99.6 6.2E-14 1.6E-18  122.9  12.2  175    2-211    29-227 (332)
 70 CHL00181 cbbX CbbX; Provisiona  99.6 1.5E-14 3.8E-19  127.5   8.5  164    1-193    25-224 (287)
 71 PRK00411 cdc6 cell division co  99.5 1.7E-13 4.3E-18  119.7  12.0  218    6-229    41-280 (394)
 72 KOG1969 consensus               99.5 1.8E-13 4.7E-18  119.5  11.5  168   22-218   327-520 (877)
 73 pfam03215 Rad17 Rad17 cell cyc  99.5 5.6E-13 1.4E-17  115.9  13.2  197    6-209    30-256 (490)
 74 pfam06068 TIP49 TIP49 C-termin  99.5 6.8E-13 1.7E-17  115.3  11.7  102  107-209   276-390 (395)
 75 TIGR01128 holA DNA polymerase   99.4 1.8E-10 4.7E-15   97.3  18.7  299   21-346     2-331 (331)
 76 cd00009 AAA The AAA+ (ATPases   99.3 1.1E-11 2.9E-16  106.2  10.4  131    2-158     1-144 (151)
 77 TIGR03015 pepcterm_ATPase puta  99.3 2.2E-11 5.5E-16  104.2  11.4  203    3-213    27-244 (269)
 78 PRK10865 protein disaggregatio  99.3 1.4E-11 3.6E-16  105.6   8.4  184    1-214   180-400 (857)
 79 TIGR00763 lon ATP-dependent pr  99.3 5.3E-12 1.3E-16  108.7   6.0  154   21-196   449-640 (941)
 80 COG1223 Predicted ATPase (AAA+  99.3 3.6E-11 9.1E-16  102.6   9.9  172    1-199   123-317 (368)
 81 TIGR03345 VI_ClpV1 type VI sec  99.3 1.1E-11 2.9E-16  106.2   7.2  183    1-213   189-408 (852)
 82 COG1224 TIP49 DNA helicase TIP  99.3 8.8E-11 2.2E-15   99.7  11.2  118  107-225   292-426 (450)
 83 CHL00095 clpC Clp protease ATP  99.3 2.8E-11 7.1E-16  103.3   8.5  182    1-213   181-399 (823)
 84 pfam00004 AAA ATPase family as  99.2 3.2E-11 8.2E-16  102.9   7.7  111   24-160     1-126 (131)
 85 TIGR03346 chaperone_ClpB ATP-d  99.2 3.4E-11 8.7E-16  102.7   7.2  184    1-214   175-395 (852)
 86 PRK11034 clpA ATP-dependent Cl  99.2 1.1E-10 2.8E-15   98.9   9.0  182    1-213   188-407 (758)
 87 KOG1970 consensus               99.2 4.5E-10 1.2E-14   94.4  12.0  195    8-213    91-320 (634)
 88 TIGR02928 TIGR02928 orc1/cdc6   99.2 1.3E-09 3.3E-14   91.0  13.3  226    9-243    31-301 (383)
 89 TIGR03420 DnaA_homol_Hda DnaA   99.2 1.1E-09 2.7E-14   91.7  12.8  193    2-228    19-225 (226)
 90 COG0542 clpA ATP-binding subun  99.1 1.9E-10 4.8E-15   97.2   7.0  102   91-198   251-370 (786)
 91 PRK03992 proteasome-activating  99.1   1E-09 2.6E-14   91.8  10.5  172    1-200   134-337 (390)
 92 PRK05342 clpX ATP-dependent pr  99.1 5.3E-10 1.4E-14   93.9   8.9  112    1-133    74-215 (411)
 93 CHL00176 ftsH cell division pr  99.1 6.5E-10 1.7E-14   93.3   8.9  177    1-205   179-386 (631)
 94 KOG1968 consensus               99.1 3.7E-10 9.3E-15   95.1   7.2  173   23-212   359-535 (871)
 95 COG1474 CDC6 Cdc6-related prot  99.1 2.6E-09 6.7E-14   88.8  10.8  209    6-226    28-260 (366)
 96 PRK10787 DNA-binding ATP-depen  99.1 1.6E-09 4.1E-14   90.4   9.5  180    3-203   326-543 (784)
 97 KOG1942 consensus               99.0 1.3E-08 3.3E-13   83.7  12.7  119  107-226   297-433 (456)
 98 PRK10733 hflB ATP-dependent me  99.0 3.5E-09 8.9E-14   87.9   8.4  175    1-203   154-359 (644)
 99 PRK10865 protein disaggregatio  99.0 2.1E-08 5.4E-13   82.1  12.2  133    1-147   570-721 (857)
100 PRK05642 DNA replication initi  99.0 2.7E-08 6.9E-13   81.3  12.6  197    1-230    22-234 (234)
101 COG0466 Lon ATP-dependent Lon   99.0 3.4E-09 8.6E-14   88.0   7.8  172    5-196   333-536 (782)
102 PTZ00112 origin recognition co  98.9 5.2E-09 1.3E-13   86.6   8.6  214    6-254   278-524 (650)
103 TIGR03346 chaperone_ClpB ATP-d  98.9   2E-08 5.1E-13   82.3  11.6  133    1-148   567-720 (852)
104 PRK08903 hypothetical protein;  98.9 1.4E-08 3.5E-13   83.5  10.6  192    1-229    21-224 (227)
105 PRK05201 hslU ATP-dependent pr  98.9 4.6E-09 1.2E-13   87.0   8.0   90  108-197   250-379 (442)
106 PRK06893 DNA replication initi  98.9   3E-08 7.6E-13   81.0  11.5  195    2-230    20-229 (229)
107 pfam00308 Bac_DnaA Bacterial d  98.9 1.5E-08 3.8E-13   83.2   9.7  193    1-215    11-216 (219)
108 KOG0730 consensus               98.9 4.1E-08   1E-12   80.0  11.3   28   19-46    216-243 (693)
109 KOG2004 consensus               98.9 1.7E-08 4.4E-13   82.8   9.4  172    3-194   415-622 (906)
110 pfam07724 AAA_2 AAA domain (Cd  98.9 1.2E-09   3E-14   91.4   3.2   95   23-132     5-101 (168)
111 PRK13765 ATP-dependent proteas  98.9 8.6E-08 2.2E-12   77.6  12.6  194    1-197    33-352 (637)
112 CHL00081 chlI Mg-protoporyphyr  98.9 5.5E-08 1.4E-12   79.0  11.6  152    1-157    14-204 (347)
113 KOG1051 consensus               98.9 7.6E-09 1.9E-13   85.4   6.9  132    1-150   564-715 (898)
114 PRK05907 hypothetical protein;  98.8 1.3E-06 3.3E-11   68.9  17.5  244   91-348    54-311 (311)
115 TIGR02639 ClpA ATP-dependent C  98.8 2.1E-08 5.3E-13   82.1   8.0  168    1-199   210-411 (774)
116 CHL00195 ycf46 Ycf46; Provisio  98.8 3.4E-08 8.6E-13   80.6   8.9  148   19-199   257-427 (491)
117 PRK08084 DNA replication initi  98.8 1.9E-07 4.9E-12   75.0  12.5  194    1-228    25-233 (235)
118 TIGR02881 spore_V_K stage V sp  98.8   5E-08 1.3E-12   79.4   9.4  149   16-193    37-206 (261)
119 COG0714 MoxR-like ATPases [Gen  98.8 4.7E-08 1.2E-12   79.5   9.3  144    1-169    26-193 (329)
120 TIGR01241 FtsH_fam ATP-depende  98.8 1.1E-08 2.7E-13   84.3   5.9  167    1-199    61-263 (505)
121 PRK11034 clpA ATP-dependent Cl  98.8 1.9E-07 4.8E-12   75.1  11.4  128    1-147   460-608 (758)
122 PRK08727 hypothetical protein;  98.7 2.5E-07 6.4E-12   74.2  11.7  194    1-228    22-228 (233)
123 CHL00095 clpC Clp protease ATP  98.7 1.9E-07 4.9E-12   75.1  11.0  132    1-145   511-661 (823)
124 COG0464 SpoVK ATPases of the A  98.7 2.7E-07 6.8E-12   74.0  11.6  153   19-199   274-445 (494)
125 PRK00149 dnaA chromosomal repl  98.7 3.2E-06 8.1E-11   66.0  16.8  179   18-228   142-343 (447)
126 pfam01637 Arch_ATPase Archaeal  98.7 4.3E-07 1.1E-11   72.5  12.0  195    2-203     2-219 (223)
127 COG0593 DnaA ATPase involved i  98.7 4.1E-07   1E-11   72.6  11.8  194   11-229   101-311 (408)
128 KOG2680 consensus               98.7 2.4E-07 6.1E-12   74.4  10.5  101  107-208   289-402 (454)
129 TIGR03345 VI_ClpV1 type VI sec  98.7   3E-07 7.8E-12   73.6  11.0  131    1-147   568-719 (852)
130 pfam06144 DNA_pol3_delta DNA p  98.7 4.6E-08 1.2E-12   79.6   6.4  161   24-210     1-169 (172)
131 TIGR02639 ClpA ATP-dependent C  98.7 1.4E-07 3.5E-12   76.1   8.1  127    1-145   499-646 (774)
132 TIGR00602 rad24 checkpoint pro  98.7 6.2E-07 1.6E-11   71.3  11.4  189   22-216   119-356 (670)
133 PRK06620 hypothetical protein;  98.6 5.1E-07 1.3E-11   71.9  10.1  178    4-227    24-212 (214)
134 KOG0742 consensus               98.6 6.3E-07 1.6E-11   71.2   9.8  142   11-178   370-528 (630)
135 PRK13407 bchI magnesium chelat  98.6 5.4E-07 1.4E-11   71.7   9.0  140    1-147    10-181 (334)
136 KOG0733 consensus               98.5 4.6E-07 1.2E-11   72.3   8.2  159   21-208   223-403 (802)
137 PRK11361 acetoacetate metaboli  98.5 2.9E-07 7.5E-12   73.7   7.1  206    1-224   145-386 (457)
138 COG1221 PspF Transcriptional r  98.5 2.6E-07 6.7E-12   74.0   6.1  197    1-217    80-311 (403)
139 KOG0738 consensus               98.5 2.8E-06 7.1E-11   66.5  11.1  167    1-199   214-415 (491)
140 PRK10923 glnG nitrogen regulat  98.5 2.3E-06 5.8E-11   67.1  10.6  206    1-224   140-381 (469)
141 PRK11608 pspF phage shock prot  98.5 6.9E-07 1.8E-11   70.9   7.7  198    1-217     8-242 (325)
142 PRK10820 DNA-binding transcrip  98.5 1.5E-06 3.9E-11   68.4   9.2  197    1-224   206-440 (513)
143 COG0542 clpA ATP-binding subun  98.5 3.9E-06 9.8E-11   65.4  11.0  135    1-150   493-648 (786)
144 KOG0743 consensus               98.5 6.6E-07 1.7E-11   71.1   7.0  137    6-176   212-381 (457)
145 PRK09087 hypothetical protein;  98.4 2.2E-06 5.5E-11   67.3   9.5  181    4-229    29-220 (226)
146 pfam07728 AAA_5 AAA domain (dy  98.4   5E-07 1.3E-11   71.9   6.1   88   24-132     2-92  (139)
147 smart00382 AAA ATPases associa  98.4 3.6E-07 9.2E-12   73.0   5.0  116   21-145     2-125 (148)
148 COG1219 ClpX ATP-dependent pro  98.4 1.6E-07 4.2E-12   75.5   3.3  108    1-132    63-202 (408)
149 pfam01078 Mg_chelatase Magnesi  98.4 1.4E-06 3.6E-11   68.6   7.8  114    1-132     5-132 (207)
150 TIGR00382 clpX ATP-dependent C  98.4 6.3E-07 1.6E-11   71.2   5.5  111    1-136   103-266 (452)
151 KOG2227 consensus               98.4 6.3E-07 1.6E-11   71.2   5.4  200    7-212   162-376 (529)
152 COG1239 ChlI Mg-chelatase subu  98.4 4.6E-06 1.2E-10   64.8   9.6  163    1-168    19-221 (423)
153 KOG0734 consensus               98.4 2.6E-06 6.6E-11   66.7   8.0  151   17-199   333-504 (752)
154 pfam07726 AAA_3 ATPase family   98.3 5.4E-07 1.4E-11   71.7   4.4   85   23-132     1-88  (131)
155 KOG1514 consensus               98.3 1.6E-05   4E-10   60.9  11.9  191    6-216   407-629 (767)
156 KOG0731 consensus               98.3 1.6E-05   4E-10   60.9  11.9  126    1-153   313-467 (774)
157 KOG0740 consensus               98.3 8.2E-06 2.1E-10   63.0   9.7  166    2-199   156-354 (428)
158 pfam05673 DUF815 Protein of un  98.3 1.7E-05 4.4E-10   60.6  11.1  122    1-154    30-160 (248)
159 PRK10365 transcriptional regul  98.3 2.8E-06 7.1E-11   66.5   7.0  205    1-223   141-381 (441)
160 PRK11388 DNA-binding transcrip  98.3 1.3E-05 3.3E-10   61.6  10.0  203    1-224   327-564 (639)
161 PRK12422 chromosomal replicati  98.3   6E-05 1.5E-09   56.6  13.2  156   22-211   142-317 (455)
162 PRK05022 anaerobic nitric oxid  98.3 7.2E-06 1.8E-10   63.4   8.4  194    1-215   188-419 (510)
163 COG1222 RPT1 ATP-dependent 26S  98.2 7.5E-06 1.9E-10   63.3   7.9  170    3-200   155-356 (406)
164 KOG2170 consensus               98.2 1.8E-05 4.6E-10   60.5   9.4  132    1-152    84-231 (344)
165 KOG0736 consensus               98.2 4.1E-05   1E-09   57.9  10.9  169    4-199   406-596 (953)
166 COG0465 HflB ATP-dependent Zn   98.2   1E-05 2.6E-10   62.3   7.7  130    1-158   152-309 (596)
167 PRK04841 transcriptional regul  98.2 0.00048 1.2E-08   50.0  16.0  182   10-201    21-219 (903)
168 KOG0744 consensus               98.2 3.6E-06 9.1E-11   65.7   5.1  128   23-175   179-337 (423)
169 KOG0733 consensus               98.1 4.9E-05 1.2E-09   57.3  10.7  164    3-196   515-711 (802)
170 pfam00493 MCM MCM2/3/5 family.  98.1 2.1E-05 5.4E-10   60.0   8.1  141    1-166    26-208 (327)
171 pfam00158 Sigma54_activat Sigm  98.0 8.2E-06 2.1E-10   63.0   5.2  113    1-132     1-119 (168)
172 KOG0737 consensus               98.0   2E-05   5E-10   60.2   7.1  169    3-199    96-294 (386)
173 COG2204 AtoC Response regulato  98.0 3.2E-05 8.2E-10   58.6   7.7  200    1-224   143-384 (464)
174 pfam05621 TniB Bacterial TniB   98.0 0.00011 2.9E-09   54.6  10.4  195    2-210    37-264 (302)
175 COG2607 Predicted ATPase (AAA+  98.0 0.00021 5.4E-09   52.6  11.5  124    1-156    62-194 (287)
176 TIGR00368 TIGR00368 Mg chelata  98.0 3.8E-06 9.7E-11   65.5   2.6   40    1-43    196-235 (505)
177 KOG0739 consensus               98.0 0.00026 6.6E-09   52.0  11.8  271    1-311   135-437 (439)
178 TIGR01242 26Sp45 26S proteasom  97.9 2.8E-05   7E-10   59.1   6.4  156   21-205   156-332 (364)
179 PRK09862 putative ATP-dependen  97.9 7.6E-05 1.9E-09   55.9   8.5  149    1-177   193-371 (506)
180 COG3267 ExeA Type II secretory  97.9 0.00027   7E-09   51.7  11.3  186    4-202    36-240 (269)
181 PRK10875 recD exonuclease V su  97.9 9.5E-05 2.4E-09   55.2   8.5  111   23-144   164-295 (607)
182 KOG0741 consensus               97.9 4.4E-05 1.1E-09   57.6   6.8  122    8-150   231-383 (744)
183 KOG0735 consensus               97.9 0.00011 2.9E-09   54.6   8.3  171   21-213   431-622 (952)
184 TIGR02442 Cob-chelat-sub cobal  97.9 1.8E-05 4.7E-10   60.4   4.2  272    1-347     6-312 (688)
185 COG0606 Predicted ATPase with   97.8 3.7E-05 9.5E-10   58.1   5.7   41    1-44    181-221 (490)
186 TIGR01243 CDC48 AAA family ATP  97.8 0.00024 6.1E-09   52.2   9.6  175    2-205   544-750 (980)
187 pfam00931 NB-ARC NB-ARC domain  97.8   5E-05 1.3E-09   57.2   6.1  184    7-202     4-196 (285)
188 COG2909 MalT ATP-dependent tra  97.8   0.003 7.7E-08   44.1  14.8  174    9-200    25-226 (894)
189 KOG0745 consensus               97.8 3.2E-05 8.2E-10   58.6   4.2   88   24-132   229-331 (564)
190 PRK11331 5-methylcytosine-spec  97.7 0.00091 2.3E-08   47.9  10.6  112   14-132   187-299 (459)
191 TIGR02030 BchI-ChlI magnesium   97.7 8.5E-05 2.2E-09   55.5   5.3  164    1-170     6-213 (340)
192 TIGR02640 gas_vesic_GvpN gas v  97.6 0.00011 2.8E-09   54.6   5.4  114    7-132    10-131 (265)
193 pfam00448 SRP54 SRP54-type pro  97.6 0.00028 7.1E-09   51.7   7.3  137   21-162     1-142 (196)
194 PRK13853 type IV secretion sys  97.6  0.0067 1.7E-07   41.5  14.0   26   17-43    423-448 (789)
195 PRK12377 putative replication   97.6 0.00053 1.3E-08   49.7   8.3   98   21-145   101-205 (248)
196 PRK09183 transposase/IS protei  97.6 0.00017 4.4E-09   53.2   5.7   99   21-146   101-205 (258)
197 KOG1808 consensus               97.6 0.00016 4.2E-09   53.4   5.5  149    5-176   426-597 (1856)
198 KOG0730 consensus               97.6 0.00082 2.1E-08   48.2   8.9  169    3-199   438-635 (693)
199 PRK06526 transposase; Provisio  97.5 0.00031 7.9E-09   51.4   6.5  101   21-146    98-201 (254)
200 PRK08116 hypothetical protein;  97.5 0.00088 2.2E-08   48.0   8.8  114   10-146    97-215 (262)
201 smart00350 MCM minichromosome   97.5 0.00055 1.4E-08   49.5   7.7  131    1-163   205-350 (509)
202 TIGR02880 cbbX_cfxQ CbbX prote  97.5 0.00067 1.7E-08   48.9   8.0  146   22-194    60-224 (284)
203 TIGR00390 hslU heat shock prot  97.5 0.00013 3.4E-09   54.1   4.4   46    1-46     14-72  (463)
204 PRK11545 gntK gluconate kinase  97.5 0.00086 2.2E-08   48.1   8.1  120   17-160     4-128 (177)
205 KOG0652 consensus               97.5  0.0014 3.5E-08   46.6   9.0  167    3-198   175-374 (424)
206 pfam03266 DUF265 Protein of un  97.4 9.1E-05 2.3E-09   55.3   2.7  145   24-171     2-164 (168)
207 PRK08181 transposase; Validate  97.4 0.00049 1.3E-08   49.9   6.3  104   13-146   101-209 (269)
208 KOG0736 consensus               97.3 0.00083 2.1E-08   48.2   6.6  126    3-154   676-829 (953)
209 pfam01695 IstB IstB-like ATP b  97.3 0.00059 1.5E-08   49.3   5.8   99   21-145    47-149 (178)
210 KOG0735 consensus               97.3  0.0013 3.3E-08   46.7   7.3  164    3-199   671-868 (952)
211 KOG0727 consensus               97.3  0.0011 2.8E-08   47.3   6.8  124   20-169   188-330 (408)
212 cd02021 GntK Gluconate kinase   97.2  0.0021 5.3E-08   45.2   7.9  121   24-160     2-122 (150)
213 KOG0741 consensus               97.2  0.0012   3E-08   47.1   6.5  102   23-149   540-653 (744)
214 TIGR01243 CDC48 AAA family ATP  97.2  0.0012 3.1E-08   47.0   6.5  112   20-157   239-363 (980)
215 PRK12724 flagellar biosynthesi  97.2  0.0016 4.2E-08   46.0   6.8  121   23-165   225-364 (432)
216 COG1484 DnaC DNA replication p  97.2  0.0023 5.8E-08   45.0   7.5   98    5-132    89-195 (254)
217 PRK13898 type IV secretion sys  97.2   0.031 7.9E-07   36.6  13.4   89  102-200   638-737 (800)
218 PRK11131 ATP-dependent RNA hel  97.2  0.0029 7.3E-08   44.2   8.0  131    9-149    80-233 (1295)
219 smart00487 DEXDc DEAD-like hel  97.2  0.0013 3.4E-08   46.7   6.3   44  103-146   126-170 (201)
220 PRK13695 putative NTPase; Prov  97.2  0.0005 1.3E-08   49.9   4.1  144   21-171     3-163 (174)
221 PRK11889 flhF flagellar biosyn  97.1  0.0022 5.6E-08   45.1   7.2  119   21-162   241-379 (436)
222 PRK06731 flhF flagellar biosyn  97.1  0.0056 1.4E-07   42.1   9.2  115   19-144    73-195 (270)
223 PRK13873 conjugal transfer ATP  97.1  0.0047 1.2E-07   42.7   8.8   86  103-196   635-733 (815)
224 TIGR02173 cyt_kin_arch cytidyl  97.1 0.00024 6.2E-09   52.2   2.2   46   25-81      4-49  (173)
225 PRK05703 flhF flagellar biosyn  97.1    0.01 2.6E-07   40.2  10.1  117   21-163   210-348 (412)
226 pfam05729 NACHT NACHT domain.   97.1  0.0024   6E-08   44.8   6.8  143   24-177     3-161 (165)
227 KOG0732 consensus               97.1  0.0024 6.1E-08   44.8   6.7  132    3-157   269-427 (1080)
228 PRK09825 idnK D-gluconate kina  97.1 0.00041   1E-08   50.5   2.7  116   21-160     3-123 (176)
229 PRK11664 ATP-dependent RNA hel  97.0  0.0069 1.7E-07   41.4   8.9  129    6-141     8-154 (812)
230 COG1618 Predicted nucleotide k  97.0  0.0063 1.6E-07   41.7   8.4  133   19-162     3-158 (179)
231 PRK06995 flhF flagellar biosyn  97.0  0.0076 1.9E-07   41.1   8.8   60  105-164   253-315 (404)
232 COG1643 HrpA HrpA-like helicas  97.0  0.0027 6.8E-08   44.5   6.5   49   94-142   150-201 (845)
233 PRK06835 DNA replication prote  97.0  0.0054 1.4E-07   42.2   7.9   41    6-46    167-208 (330)
234 COG4178 ABC-type uncharacteriz  97.0  0.0016 4.1E-08   46.1   5.1   51  105-157   532-583 (604)
235 COG1220 HslU ATP-dependent pro  96.9 0.00095 2.4E-08   47.8   3.8   46    1-46     17-75  (444)
236 cd03115 SRP The signal recogni  96.9  0.0039 9.9E-08   43.3   6.9   23   24-46      3-25  (173)
237 KOG0651 consensus               96.9  0.0044 1.1E-07   42.9   7.0  110   19-154   164-289 (388)
238 PRK13900 type IV secretion sys  96.9   0.012   3E-07   39.7   8.9   37    6-45    148-184 (332)
239 pfam09848 DUF2075 Uncharacteri  96.8  0.0012 3.2E-08   46.9   3.6  106   22-141     2-121 (348)
240 pfam05707 Zot Zonular occluden  96.8  0.0017 4.3E-08   45.9   4.1   65  108-172    72-143 (183)
241 PRK12723 flagellar biosynthesi  96.8  0.0087 2.2E-07   40.7   7.6  115   21-161   174-313 (388)
242 PRK13531 regulatory ATPase Rav  96.8  0.0052 1.3E-07   42.3   6.5  141    5-169    26-184 (498)
243 PRK03839 putative kinase; Prov  96.8   0.004   1E-07   43.2   5.8   26   24-49      3-28  (180)
244 KOG0922 consensus               96.7  0.0056 1.4E-07   42.1   6.3  133    9-148    57-209 (674)
245 KOG0729 consensus               96.7  0.0038 9.8E-08   43.3   5.5  126    3-154   181-334 (435)
246 PRK13830 conjugal transfer pro  96.7   0.027 6.8E-07   37.1   9.5   58   17-77    453-511 (818)
247 KOG1051 consensus               96.7   0.016 4.2E-07   38.6   8.4  167    1-197   188-386 (898)
248 KOG0728 consensus               96.6   0.009 2.3E-07   40.6   6.9  128   21-174   181-327 (404)
249 KOG1803 consensus               96.6  0.0026 6.7E-08   44.5   4.2   44  107-158   359-403 (649)
250 cd00046 DEXDc DEAD-like helica  96.6  0.0073 1.9E-07   41.2   6.5   42  104-145   101-143 (144)
251 pfam06309 Torsin Torsin. This   96.6  0.0052 1.3E-07   42.3   5.6   46    1-46     27-78  (127)
252 pfam00270 DEAD DEAD/DEAH box h  96.6   0.019 4.8E-07   38.2   8.5   32    4-42      4-35  (167)
253 cd00464 SK Shikimate kinase (S  96.6   0.011 2.9E-07   39.8   7.2   30   24-53      2-31  (154)
254 TIGR01967 DEAH_box_HrpA ATP-de  96.6   0.011 2.7E-07   40.1   7.1  142    9-168    75-262 (1320)
255 cd01130 VirB11-like_ATPase Typ  96.6   0.028 7.3E-07   36.9   9.2  141    5-171    12-159 (186)
256 PRK07952 DNA replication prote  96.6  0.0034 8.6E-08   43.7   4.4   24   23-46     98-121 (242)
257 PRK04220 2-phosphoglycerate ki  96.6   0.062 1.6E-06   34.4  10.8  135   11-160    82-239 (306)
258 TIGR01448 recD_rel helicase, R  96.6   0.013 3.4E-07   39.3   7.4  134    9-175   357-507 (769)
259 pfam04851 ResIII Type III rest  96.6  0.0097 2.5E-07   40.3   6.6   93    4-144     8-100 (103)
260 PRK06067 flagellar accessory p  96.5   0.012 3.1E-07   39.6   6.9   33   11-44     21-55  (241)
261 PRK13948 shikimate kinase; Pro  96.5   0.013 3.4E-07   39.3   7.1   35   19-53      8-42  (182)
262 COG4088 Predicted nucleotide k  96.5  0.0036 9.1E-08   43.5   4.0   26   23-48      3-28  (261)
263 cd01123 Rad51_DMC1_radA Rad51_  96.5  0.0066 1.7E-07   41.6   5.3   22   22-43     20-41  (235)
264 COG3283 TyrR Transcriptional r  96.4   0.038 9.7E-07   35.9   9.1  181   20-224   226-442 (511)
265 cd03289 ABCC_CFTR2 The CFTR su  96.4   0.019 4.9E-07   38.1   7.6   52  105-161   155-207 (275)
266 PRK11176 lipid transporter ATP  96.4   0.012   3E-07   39.7   6.3   13  334-346   486-498 (581)
267 cd03245 ABCC_bacteriocin_expor  96.4  0.0062 1.6E-07   41.8   4.8   29   22-50     31-59  (220)
268 TIGR03375 type_I_sec_LssB type  96.4   0.015 3.7E-07   39.0   6.7   12   28-39     28-39  (694)
269 cd01121 Sms Sms (bacterial rad  96.4   0.025 6.4E-07   37.3   7.9   36   10-45     70-106 (372)
270 COG1373 Predicted ATPase (AAA+  96.4   0.088 2.2E-06   33.3  10.5  132    7-172    25-161 (398)
271 PRK00131 aroK shikimate kinase  96.4   0.034 8.7E-07   36.3   8.4   30   24-53      7-36  (175)
272 cd03369 ABCC_NFT1 Domain 2 of   96.3   0.012 2.9E-07   39.8   6.0   24   23-46     36-59  (207)
273 PRK13947 shikimate kinase; Pro  96.3   0.027 6.8E-07   37.1   7.8   30   24-53      4-33  (171)
274 PRK11160 cysteine/glutathione   96.3   0.028 7.2E-07   36.9   7.8   12  334-345   483-494 (575)
275 cd03244 ABCC_MRP_domain2 Domai  96.3   0.017 4.3E-07   38.5   6.6   23   23-45     32-54  (221)
276 pfam07693 KAP_NTPase KAP famil  96.3    0.13 3.2E-06   32.1  11.7   41    6-46      3-45  (301)
277 PRK10790 putative multidrug tr  96.3   0.023 5.8E-07   37.6   7.3   12  334-345   483-494 (593)
278 COG1119 ModF ABC-type molybden  96.3   0.016   4E-07   38.8   6.3   24   21-45     58-81  (257)
279 PRK05057 aroK shikimate kinase  96.3    0.02 5.2E-07   38.0   6.8   30   24-53      7-36  (172)
280 cd03288 ABCC_SUR2 The SUR doma  96.3   0.022 5.5E-07   37.8   7.0   24   23-46     49-72  (257)
281 KOG0478 consensus               96.2  0.0031 7.8E-08   44.0   2.6  146    1-169   431-615 (804)
282 PRK10789 putative multidrug tr  96.2   0.047 1.2E-06   35.3   8.6   13  334-346   458-470 (569)
283 TIGR01447 recD exodeoxyribonuc  96.2   0.026 6.7E-07   37.1   7.3  139   23-178   244-412 (753)
284 PRK09361 radB DNA repair and r  96.2   0.025 6.4E-07   37.3   7.1   35   11-45     12-47  (224)
285 COG0703 AroK Shikimate kinase   96.2   0.026 6.7E-07   37.1   7.2  127   24-179     5-135 (172)
286 KOG0726 consensus               96.2   0.036 9.2E-07   36.1   7.7  135    3-164   189-355 (440)
287 TIGR01313 therm_gnt_kin carboh  96.2   0.041   1E-06   35.7   8.0  121   24-175     1-140 (175)
288 COG3604 FhlA Transcriptional r  96.2   0.033 8.3E-07   36.4   7.5  203    1-223   225-464 (550)
289 PRK13946 shikimate kinase; Pro  96.1   0.037 9.3E-07   36.1   7.7   39   11-53     14-52  (195)
290 PRK13949 shikimate kinase; Pro  96.1   0.026 6.6E-07   37.2   6.8   30   24-53      4-33  (169)
291 TIGR02237 recomb_radB DNA repa  96.1  0.0038 9.7E-08   43.3   2.5   90   15-133     9-100 (223)
292 cd03253 ABCC_ATM1_transporter   96.1   0.016 4.1E-07   38.7   5.6   23   23-45     29-51  (236)
293 PRK08533 flagellar accessory p  96.1   0.046 1.2E-06   35.4   7.9  137   11-151    13-167 (230)
294 PRK11174 cysteine/glutathione   96.1   0.037 9.4E-07   36.1   7.4   15  333-347   491-505 (588)
295 cd03228 ABCC_MRP_Like The MRP   96.1  0.0092 2.4E-07   40.5   4.3  118   22-147    29-156 (171)
296 smart00763 AAA_PrkA PrkA AAA d  96.0   0.014 3.6E-07   39.1   5.1   45    1-45     53-102 (361)
297 cd03248 ABCC_TAP TAP, the Tran  96.0   0.021 5.3E-07   37.9   5.9   23   23-45     42-64  (226)
298 PRK13632 cbiO cobalt transport  96.0   0.066 1.7E-06   34.2   8.4   24   22-45     37-60  (273)
299 PRK13851 type IV secretion sys  96.0   0.068 1.7E-06   34.1   8.5   37    6-45    150-186 (343)
300 TIGR03263 guanyl_kin guanylate  96.0   0.066 1.7E-06   34.2   8.4   22   23-44      3-24  (180)
301 TIGR00959 ffh signal recogniti  96.0   0.017 4.2E-07   38.6   5.2   28   18-45     99-126 (439)
302 cd03252 ABCC_Hemolysin The ABC  96.0   0.028 7.1E-07   36.9   6.4   28   23-50     30-57  (237)
303 PRK09435 arginine/ornithine tr  96.0   0.039 9.8E-07   35.9   7.1   40    7-46     35-74  (325)
304 KOG2543 consensus               95.9   0.041 1.1E-06   35.7   7.1  161    3-175    10-190 (438)
305 cd03247 ABCC_cytochrome_bd The  95.9   0.012 3.1E-07   39.6   4.3   30   22-51     29-58  (178)
306 KOG1805 consensus               95.9   0.014 3.6E-07   39.1   4.6  141    8-159   675-842 (1100)
307 COG1116 TauB ABC-type nitrate/  95.9   0.018 4.6E-07   38.4   5.2   27   24-50     32-58  (248)
308 KOG4658 consensus               95.9    0.15 3.8E-06   31.6   9.9  175    2-209   161-363 (889)
309 PRK13539 cytochrome c biogenes  95.9   0.017 4.4E-07   38.5   5.1   24   22-45     29-52  (206)
310 cd03249 ABC_MTABC3_MDL1_MDL2 M  95.9    0.03 7.7E-07   36.7   6.2   23   23-45     31-53  (238)
311 cd03246 ABCC_Protease_Secretio  95.9   0.013 3.4E-07   39.3   4.4  116   23-147    30-157 (173)
312 cd03223 ABCD_peroxisomal_ALDP   95.9  0.0069 1.8E-07   41.4   2.9  106   23-147    29-149 (166)
313 PHA00350 putative assembly pro  95.9   0.016 4.2E-07   38.7   4.8  126   24-160     4-159 (402)
314 PRK13657 cyclic beta-1,2-gluca  95.8   0.031 7.8E-07   36.6   6.0   15  333-347   477-491 (585)
315 PRK11823 DNA repair protein Ra  95.8   0.064 1.6E-06   34.3   7.6   35   11-45     79-114 (454)
316 cd01120 RecA-like_NTPases RecA  95.8   0.053 1.4E-06   34.9   7.2   23   24-46      2-24  (165)
317 PRK12727 flagellar biosynthesi  95.8   0.056 1.4E-06   34.7   7.3   59  104-162   424-484 (557)
318 pfam06414 Zeta_toxin Zeta toxi  95.7   0.022 5.6E-07   37.7   5.0  125   19-158    10-140 (191)
319 COG2274 SunT ABC-type bacterio  95.7   0.036 9.1E-07   36.2   6.1   15  108-122    97-111 (709)
320 PRK09302 circadian clock prote  95.7   0.034 8.6E-07   36.3   5.9   28   15-42     16-45  (501)
321 PRK13544 consensus              95.6   0.016 4.2E-07   38.7   4.1   23   23-45     29-51  (208)
322 cd01393 recA_like RecA is a  b  95.6   0.051 1.3E-06   35.0   6.6   27   18-44     14-42  (226)
323 PRK13891 conjugal transfer pro  95.6    0.24 6.1E-06   30.1  10.5   27   17-44    485-511 (852)
324 pfam08542 Rep_fac_C Replicatio  95.6     0.2 5.1E-06   30.7   9.6   88  229-344     1-89  (90)
325 cd00550 ArsA_ATPase Oxyanion-t  95.6    0.06 1.5E-06   34.5   7.0   22   24-45      3-24  (254)
326 cd00984 DnaB_C DnaB helicase C  95.6   0.048 1.2E-06   35.2   6.4   26   20-45     12-37  (242)
327 TIGR01618 phage_P_loop phage n  95.6   0.005 1.3E-07   42.5   1.3   81   19-118    10-97  (229)
328 COG0529 CysC Adenylylsulfate k  95.6    0.07 1.8E-06   34.0   7.2  122    4-140     6-127 (197)
329 cd04155 Arl3 Arl3 subfamily.    95.6    0.11 2.7E-06   32.7   8.1  135    8-174     2-140 (173)
330 PRK10867 signal recognition pa  95.6    0.15 3.8E-06   31.5   8.9  123   19-149    98-229 (453)
331 PRK03846 adenylylsulfate kinas  95.6   0.009 2.3E-07   40.6   2.6   44    3-46      6-49  (198)
332 PRK07414 cob(I)yrinic acid a,c  95.6    0.15 3.7E-06   31.6   8.7  121   24-149    25-162 (178)
333 COG3284 AcoR Transcriptional a  95.6   0.019 4.7E-07   38.3   4.1  189   15-222   332-548 (606)
334 KOG0477 consensus               95.6   0.036 9.1E-07   36.1   5.6  128    1-161   451-594 (854)
335 pfam06745 KaiC KaiC. This fami  95.5   0.068 1.7E-06   34.1   6.9   22   22-43     20-41  (231)
336 PRK13540 cytochrome c biogenes  95.5   0.035 8.8E-07   36.3   5.4   23   23-45     29-51  (200)
337 cd03251 ABCC_MsbA MsbA is an e  95.5   0.069 1.8E-06   34.1   6.9   23   23-45     30-52  (234)
338 pfam02562 PhoH PhoH-like prote  95.5   0.015 3.9E-07   38.9   3.6  129    3-145     8-155 (205)
339 COG1936 Predicted nucleotide k  95.5   0.051 1.3E-06   35.0   6.2   22   24-46      3-24  (180)
340 PRK10416 cell division protein  95.5    0.11 2.7E-06   32.6   7.8  124   17-148   291-428 (499)
341 pfam03308 ArgK ArgK protein. T  95.5   0.068 1.7E-06   34.1   6.8   42    5-46     13-54  (267)
342 TIGR01842 type_I_sec_PrtD type  95.5   0.031 7.9E-07   36.6   5.0  120   22-148   357-528 (556)
343 cd03254 ABCC_Glucan_exporter_l  95.5   0.021 5.4E-07   37.8   4.2   27   22-48     30-56  (229)
344 PRK00300 gmk guanylate kinase;  95.5    0.12   3E-06   32.3   8.0   24   21-44      7-30  (208)
345 pfam00437 GSPII_E Type II/IV s  95.4    0.03 7.6E-07   36.7   4.7   37    7-46    128-164 (283)
346 COG1419 FlhF Flagellar GTP-bin  95.4    0.08   2E-06   33.6   6.9  121   21-164   203-342 (407)
347 cd00267 ABC_ATPase ABC (ATP-bi  95.4   0.045 1.1E-06   35.4   5.6  114   22-150    26-144 (157)
348 pfam01745 IPT Isopentenyl tran  95.4   0.032 8.1E-07   36.5   4.8  104   23-157     3-111 (232)
349 PRK00771 signal recognition pa  95.4    0.17 4.3E-06   31.2   8.5  126   20-155    96-229 (433)
350 pfam01057 Parvo_NS1 Parvovirus  95.3   0.087 2.2E-06   33.3   6.9   24   22-45    114-137 (271)
351 COG1061 SSL2 DNA or RNA helica  95.3   0.063 1.6E-06   34.3   6.2  131    4-146    41-184 (442)
352 pfam01580 FtsK_SpoIIIE FtsK/Sp  95.3   0.093 2.4E-06   33.1   7.0   27   19-46     37-63  (202)
353 cd03114 ArgK-like The function  95.3   0.065 1.7E-06   34.2   6.1   21   26-46      4-24  (148)
354 pfam05272 VirE Virulence-assoc  95.2   0.056 1.4E-06   34.7   5.7  115   13-156    43-160 (198)
355 PRK06921 hypothetical protein;  95.2   0.036 9.1E-07   36.2   4.6   40    7-46    101-141 (265)
356 COG3829 RocR Transcriptional r  95.2    0.14 3.5E-06   31.8   7.6  199    1-216   247-480 (560)
357 PRK11448 hsdR type I restricti  95.2     0.1 2.6E-06   32.8   6.9  138    4-147   421-597 (1126)
358 pfam09115 DNApol3-delta_C DNA   95.2    0.33 8.5E-06   29.0  12.8  104  236-347    12-117 (119)
359 cd01428 ADK Adenylate kinase (  95.1   0.015 3.7E-07   39.0   2.5   26   24-49      2-27  (194)
360 cd03226 ABC_cobalt_CbiO_domain  95.1   0.061 1.6E-06   34.4   5.6   23   23-45     28-50  (205)
361 TIGR00630 uvra excinuclease AB  95.1   0.027 6.8E-07   37.1   3.7   99   23-145    24-152 (956)
362 cd03290 ABCC_SUR1_N The SUR do  95.0   0.091 2.3E-06   33.2   6.3   23   23-45     29-51  (218)
363 PRK10584 putative ABC transpor  95.0   0.046 1.2E-06   35.3   4.8   22   23-44     38-59  (228)
364 COG1485 Predicted ATPase [Gene  95.0    0.14 3.6E-06   31.7   7.2  126   20-165    64-204 (367)
365 PRK13764 ATPase; Provisional    95.0   0.034 8.6E-07   36.3   4.0   34   11-46    251-284 (605)
366 cd03231 ABC_CcmA_heme_exporter  95.0   0.081 2.1E-06   33.5   5.9   24   21-44     26-49  (201)
367 pfam03796 DnaB_C DnaB-like hel  95.0    0.23 5.8E-06   30.2   8.2   27   19-45     17-43  (186)
368 cd03222 ABC_RNaseL_inhibitor T  95.0   0.029 7.5E-07   36.8   3.6  104   23-147    27-133 (177)
369 PRK03731 aroL shikimate kinase  94.9   0.019 4.8E-07   38.2   2.6   32   22-53      3-34  (172)
370 TIGR02858 spore_III_AA stage I  94.9   0.031 7.9E-07   36.6   3.7   36    9-45    111-147 (282)
371 COG0468 RecA RecA/RadA recombi  94.9    0.15 3.9E-06   31.5   7.1   87   26-118    65-153 (279)
372 cd01122 GP4d_helicase GP4d_hel  94.9    0.25 6.4E-06   29.9   8.2   37    9-45     18-54  (271)
373 PRK10536 hypothetical protein;  94.9   0.049 1.3E-06   35.1   4.6  123    9-145    65-212 (262)
374 pfam00910 RNA_helicase RNA hel  94.9   0.018 4.6E-07   38.3   2.4   24   25-48      2-25  (105)
375 KOG1533 consensus               94.8    0.12 3.1E-06   32.2   6.5   37  118-156   112-155 (290)
376 PRK09270 frcK putative fructos  94.8    0.02 5.1E-07   38.0   2.4   27   23-49     36-62  (230)
377 KOG2228 consensus               94.8   0.064 1.6E-06   34.3   5.0  166    4-178    33-219 (408)
378 COG1674 FtsK DNA segregation A  94.8    0.19 4.7E-06   30.9   7.3  147   18-169   528-709 (858)
379 cd03255 ABC_MJ0796_Lo1CDE_FtsE  94.8   0.068 1.7E-06   34.1   5.1   24   22-45     31-54  (218)
380 PRK10070 glycine betaine trans  94.8   0.072 1.8E-06   33.9   5.2   24   22-45     55-78  (400)
381 cd02020 CMPK Cytidine monophos  94.8   0.022 5.5E-07   37.8   2.5   86   26-143     4-91  (147)
382 COG1241 MCM2 Predicted ATPase   94.8   0.078   2E-06   33.7   5.4  128    1-160   288-430 (682)
383 cd03227 ABC_Class2 ABC-type Cl  94.7   0.093 2.4E-06   33.1   5.7  110   23-147    23-142 (162)
384 TIGR01193 bacteriocin_ABC ABC-  94.7   0.074 1.9E-06   33.8   5.2   23   23-45    502-524 (710)
385 COG4650 RtcR Sigma54-dependent  94.7     0.2 5.1E-06   30.7   7.3  111    8-133   197-309 (531)
386 PRK02496 adk adenylate kinase;  94.7   0.022 5.7E-07   37.7   2.5   26   24-49      4-29  (185)
387 cd03301 ABC_MalK_N The N-termi  94.7   0.039 9.9E-07   35.9   3.6   22   23-44     28-49  (213)
388 TIGR00455 apsK adenylylsulfate  94.7   0.023 5.9E-07   37.5   2.5   44    4-47      2-45  (187)
389 cd03260 ABC_PstB_phosphate_tra  94.6    0.13 3.2E-06   32.1   6.1   24   23-46     28-51  (227)
390 PRK05506 bifunctional sulfate   94.6   0.037 9.5E-07   36.0   3.4   34   12-45    434-467 (613)
391 pfam01583 APS_kinase Adenylyls  94.6    0.18 4.5E-06   31.1   6.8   28   21-48      2-29  (157)
392 PRK13768 GTPase; Provisional    94.6    0.03 7.6E-07   36.7   2.9   28   21-48      2-29  (253)
393 PRK08118 topology modulation p  94.5   0.029 7.3E-07   36.9   2.7   29   24-52      4-32  (167)
394 TIGR03608 L_ocin_972_ABC putat  94.5   0.088 2.2E-06   33.3   5.1   20   23-42     26-45  (206)
395 KOG0925 consensus               94.5    0.23 5.8E-06   30.2   7.2  113   20-142    61-198 (699)
396 pfam08298 AAA_PrkA PrkA AAA do  94.5   0.078   2E-06   33.7   4.8  195    2-249    61-263 (358)
397 pfam08423 Rad51 Rad51. Rad51 i  94.4    0.07 1.8E-06   34.0   4.5   20   24-43     46-65  (261)
398 TIGR02533 type_II_gspE general  94.4   0.073 1.9E-06   33.9   4.6  109    5-131   231-360 (495)
399 PRK08154 anaerobic benzoate ca  94.4    0.28 7.1E-06   29.6   7.5   46    6-52    115-164 (304)
400 PRK11629 lolD lipoprotein tran  94.4    0.13 3.3E-06   32.1   5.8   21   23-43     37-57  (233)
401 COG0563 Adk Adenylate kinase a  94.4   0.028   7E-07   37.0   2.3   27   24-50      3-29  (178)
402 pfam02367 UPF0079 Uncharacteri  94.4   0.061 1.6E-06   34.4   4.1   95    9-118     6-100 (123)
403 pfam05872 DUF853 Bacterial pro  94.4     0.2 5.2E-06   30.6   6.7   91  107-199   258-357 (504)
404 PRK00279 adk adenylate kinase;  94.3    0.03 7.7E-07   36.7   2.5   26   24-49      3-28  (215)
405 TIGR01420 pilT_fam twitching m  94.3   0.036 9.1E-07   36.2   2.8   37   10-51    118-154 (350)
406 cd03216 ABC_Carb_Monos_I This   94.3    0.11 2.9E-06   32.4   5.4  111   23-149    28-145 (163)
407 COG1102 Cmk Cytidylate kinase   94.3   0.026 6.7E-07   37.1   2.1   46   25-80      4-49  (179)
408 PRK08939 primosomal protein Dn  94.3    0.08   2E-06   33.6   4.6   13  120-132   138-150 (306)
409 PRK04328 hypothetical protein;  94.3   0.035   9E-07   36.2   2.7   33   11-44     13-47  (250)
410 pfam02572 CobA_CobO_BtuR ATP:c  94.3    0.41   1E-05   28.4   8.2  118   23-146     6-139 (172)
411 COG0552 FtsY Signal recognitio  94.3    0.42 1.1E-05   28.3   8.2   29   18-46    136-164 (340)
412 PRK13542 consensus              94.3    0.18 4.5E-06   31.1   6.2   25   21-45     44-68  (224)
413 TIGR00750 lao LAO/AO transport  94.3    0.11 2.7E-06   32.6   5.1   41    4-45     21-62  (333)
414 PTZ00088 adenylate kinase 1; P  94.3   0.033 8.5E-07   36.4   2.5   26   24-49      3-28  (225)
415 PRK09493 glnQ glutamine ABC tr  94.2    0.22 5.7E-06   30.3   6.8   23   23-45     29-51  (240)
416 PRK07261 topology modulation p  94.2   0.036 9.2E-07   36.1   2.7   28   24-51      3-30  (171)
417 cd04154 Arl2 Arl2 subfamily.    94.2    0.55 1.4E-05   27.4   9.5  136   10-175     4-141 (173)
418 PRK13541 cytochrome c biogenes  94.2   0.063 1.6E-06   34.3   3.9   24   22-45     27-50  (195)
419 COG1203 CRISPR-associated heli  94.2    0.27 6.8E-06   29.7   7.1   58  108-165   340-400 (733)
420 cd03264 ABC_drug_resistance_li  94.2    0.12   3E-06   32.4   5.2   28   14-45     22-49  (211)
421 cd04162 Arl9_Arfrp2_like Arl9/  94.2    0.13 3.2E-06   32.1   5.4  121   24-174     2-124 (164)
422 cd03235 ABC_Metallic_Cations A  94.2   0.075 1.9E-06   33.8   4.2   23   23-45     27-49  (213)
423 TIGR01351 adk adenylate kinase  94.1   0.034 8.8E-07   36.3   2.4  130   24-167     2-154 (232)
424 PRK00625 shikimate kinase; Pro  94.1   0.039   1E-06   35.8   2.7   30   24-53      3-32  (173)
425 PRK09302 circadian clock prote  94.1   0.032 8.3E-07   36.5   2.3   25   21-45    266-290 (501)
426 PRK06696 uridine kinase; Valid  94.1   0.099 2.5E-06   32.9   4.8   44    5-48      8-53  (227)
427 cd03239 ABC_SMC_head The struc  94.1    0.28 7.2E-06   29.5   7.1   41  108-148   118-160 (178)
428 KOG0923 consensus               94.1    0.19 4.8E-06   30.9   6.1  110    9-132   271-406 (902)
429 COG1066 Sms Predicted ATP-depe  94.1     0.5 1.3E-05   27.7   8.3   36   10-45     81-117 (456)
430 PRK13538 cytochrome c biogenes  94.1    0.17 4.2E-06   31.2   5.8   24   22-45     28-51  (204)
431 cd03263 ABC_subfamily_A The AB  94.1   0.072 1.8E-06   33.9   4.0   23   23-45     30-52  (220)
432 COG0324 MiaA tRNA delta(2)-iso  94.1   0.046 1.2E-06   35.4   2.9   35   20-54      2-36  (308)
433 PRK00091 miaA tRNA delta(2)-is  94.0    0.04   1E-06   35.8   2.6   29   21-49      4-32  (304)
434 cd03221 ABCF_EF-3 ABCF_EF-3  E  94.0   0.066 1.7E-06   34.2   3.7  102   22-148    27-129 (144)
435 COG2874 FlaH Predicted ATPases  94.0    0.45 1.2E-05   28.0   7.9  141   18-160    23-185 (235)
436 cd00268 DEADc DEAD-box helicas  94.0    0.61 1.6E-05   27.1   9.5   15   23-37     38-52  (203)
437 pfam02374 ArsA_ATPase Anion-tr  94.0   0.055 1.4E-06   34.8   3.2   22   24-45      4-25  (304)
438 KOG3347 consensus               94.0   0.039   1E-06   35.9   2.4   28   19-47      6-33  (176)
439 pfam05970 DUF889 PIF1 helicase  93.9   0.097 2.5E-06   32.9   4.4   46  106-152    74-127 (418)
440 TIGR03575 selen_PSTK_euk L-ser  93.9   0.041   1E-06   35.7   2.4   25   25-49      3-27  (340)
441 TIGR03522 GldA_ABC_ATP gliding  93.9    0.23 5.9E-06   30.2   6.3   46  103-148   148-194 (301)
442 cd00561 CobA_CobO_BtuR ATP:cor  93.9    0.56 1.4E-05   27.3   8.2  118   24-147     6-139 (159)
443 COG3265 GntK Gluconate kinase   93.9    0.47 1.2E-05   27.9   7.8  114   28-160     2-115 (161)
444 cd01124 KaiC KaiC is a circadi  93.9   0.032 8.2E-07   36.5   1.8   20   25-44      3-22  (187)
445 PRK00023 cmk cytidylate kinase  93.8   0.045 1.2E-06   35.4   2.5   27   25-51      8-34  (225)
446 PRK05541 adenylylsulfate kinas  93.8   0.059 1.5E-06   34.6   3.0   28   20-47      6-33  (176)
447 PRK13894 conjugal transfer ATP  93.7    0.11 2.7E-06   32.6   4.3   37    6-45    137-173 (320)
448 cd03292 ABC_FtsE_transporter F  93.7    0.17 4.3E-06   31.2   5.3   22   23-44     29-50  (214)
449 PRK13833 conjugal transfer pro  93.7    0.11 2.9E-06   32.5   4.4  109    6-137   132-243 (323)
450 cd03229 ABC_Class3 This class   93.7     0.1 2.7E-06   32.7   4.2   23   23-45     28-50  (178)
451 PRK13634 cbiO cobalt transport  93.6    0.32 8.1E-06   29.2   6.6   24   22-45     21-44  (276)
452 PRK07263 consensus              93.6    0.21 5.3E-06   30.5   5.6   25   21-45    203-227 (453)
453 cd03256 ABC_PhnC_transporter A  93.6    0.17 4.4E-06   31.1   5.2   22   24-45     30-51  (241)
454 COG0572 Udk Uridine kinase [Nu  93.6    0.17 4.3E-06   31.2   5.1   25   24-48     11-35  (218)
455 COG1703 ArgK Putative periplas  93.6    0.71 1.8E-05   26.6   9.7  102    8-115    38-152 (323)
456 PRK09544 znuC high-affinity zi  93.6    0.13 3.4E-06   31.9   4.6   23   23-45     32-54  (251)
457 PRK13766 Hef nuclease; Provisi  93.6    0.48 1.2E-05   27.8   7.4  159    8-175    21-206 (764)
458 PRK11147 ABC transporter ATPas  93.6    0.13 3.4E-06   32.0   4.5   55  105-162   173-228 (632)
459 cd03214 ABC_Iron-Siderophores_  93.5   0.082 2.1E-06   33.5   3.4   23   23-45     27-49  (180)
460 cd04161 Arl2l1_Arl13_like Arl2  93.5    0.34 8.6E-06   29.0   6.5  123   24-175     2-126 (167)
461 PRK11819 putative ABC transpor  93.5    0.18 4.6E-06   31.0   5.1   40  105-146   180-220 (556)
462 TIGR00954 3a01203 Peroxysomal   93.5   0.047 1.2E-06   35.2   2.1   24   21-45    557-580 (788)
463 KOG0952 consensus               93.4    0.11 2.9E-06   32.4   4.0   36   13-48    112-154 (1230)
464 cd03217 ABC_FeS_Assembly ABC-t  93.4    0.22 5.6E-06   30.3   5.4   21   23-43     28-48  (200)
465 COG2842 Uncharacterized ATPase  93.4    0.44 1.1E-05   28.1   7.0  115    8-140    84-199 (297)
466 cd03220 ABC_KpsT_Wzt ABC_KpsT_  93.4   0.093 2.4E-06   33.1   3.5   23   23-45     50-72  (224)
467 cd02027 APSK Adenosine 5'-phos  93.3    0.29 7.5E-06   29.4   6.0   23   24-46      2-24  (149)
468 COG1855 ATPase (PilT family) [  93.3   0.056 1.4E-06   34.7   2.3   27   22-48    264-290 (604)
469 pfam00625 Guanylate_kin Guanyl  93.3    0.28   7E-06   29.6   5.8   22   24-45      4-25  (182)
470 TIGR03574 selen_PSTK L-seryl-t  93.3   0.064 1.6E-06   34.3   2.6   23   24-46      2-24  (249)
471 PRK11192 ATP-dependent RNA hel  93.2    0.66 1.7E-05   26.8   7.7   51  106-156   149-201 (417)
472 PRK05595 replicative DNA helic  93.2    0.29 7.5E-06   29.4   5.9   24   21-44    201-224 (444)
473 PRK10636 putative ABC transpor  93.2    0.19 4.9E-06   30.8   4.9   50  105-157   166-216 (638)
474 pfam00406 ADK Adenylate kinase  93.2    0.13 3.3E-06   32.0   4.0   23   26-48      1-23  (186)
475 COG2074 2-phosphoglycerate kin  93.1    0.13 3.4E-06   32.0   3.9   38   10-47     78-115 (299)
476 cd01131 PilT Pilus retraction   93.1     0.2 5.1E-06   30.6   4.9  113   23-154     3-116 (198)
477 PRK04301 radA DNA repair and r  93.1    0.27   7E-06   29.6   5.5   24   25-50    107-130 (318)
478 COG4619 ABC-type uncharacteriz  93.1    0.37 9.5E-06   28.6   6.2   24   21-44     29-52  (223)
479 pfam09439 SRPRB Signal recogni  93.0    0.39 9.8E-06   28.5   6.2  129   22-176     4-139 (181)
480 COG0802 Predicted ATPase or ki  93.0    0.26 6.7E-06   29.8   5.4   54   20-80     24-81  (149)
481 COG1134 TagH ABC-type polysacc  93.0    0.23 5.7E-06   30.3   5.0  127   23-158    55-215 (249)
482 PHA02244 ATPase-like protein    93.0     0.1 2.7E-06   32.7   3.3   31   14-46    114-144 (383)
483 PRK10646 putative ATPase; Prov  93.0    0.27 6.9E-06   29.7   5.4  101    6-118    12-113 (153)
484 PRK13546 teichoic acids export  93.0   0.081 2.1E-06   33.6   2.7   23   23-45     52-74  (264)
485 KOG0924 consensus               93.0    0.46 1.2E-05   28.0   6.5  121    9-141   362-505 (1042)
486 TIGR00929 VirB4_CagE type IV s  92.9    0.25 6.3E-06   29.9   5.1   98   94-199   741-854 (931)
487 PRK12338 hypothetical protein;  92.9    0.15 3.8E-06   31.6   4.0  117   19-151     2-147 (320)
488 TIGR00064 ftsY signal recognit  92.9    0.29 7.3E-06   29.5   5.4   29   17-45     78-106 (284)
489 PRK12337 2-phosphoglycerate ki  92.9    0.26 6.7E-06   29.8   5.2   36   11-46    252-287 (492)
490 KOG3354 consensus               92.9    0.89 2.3E-05   25.8   8.4  128   18-160     9-142 (191)
491 KOG0354 consensus               92.9     0.9 2.3E-05   25.8   8.0  146   15-161    70-236 (746)
492 PRK00889 adenylylsulfate kinas  92.8   0.095 2.4E-06   33.0   2.9   26   21-46      4-29  (175)
493 PRK08506 replicative DNA helic  92.8    0.32 8.2E-06   29.1   5.6   25   21-45    193-217 (473)
494 PRK05748 replicative DNA helic  92.7    0.34 8.7E-06   28.9   5.6   24   21-44    203-226 (448)
495 cd01125 repA Hexameric Replica  92.7    0.94 2.4E-05   25.7   7.9   25   25-49      5-29  (239)
496 TIGR00631 uvrb excinuclease AB  92.7    0.16   4E-06   31.4   3.8   39    4-44     14-53  (667)
497 COG5635 Predicted NTPase (NACH  92.6    0.54 1.4E-05   27.4   6.5  147   21-175   223-375 (824)
498 PRK08840 replicative DNA helic  92.6    0.63 1.6E-05   27.0   6.8   24   21-44    217-240 (464)
499 PRK13633 cobalt transporter AT  92.5    0.39 9.9E-06   28.5   5.7   23   23-45     39-61  (281)
500 cd03238 ABC_UvrA The excision   92.5    0.48 1.2E-05   27.9   6.2  117   24-147    24-150 (176)

No 1  
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763    This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=100.00  E-value=0  Score=812.56  Aligned_cols=341  Identities=45%  Similarity=0.710  Sum_probs=332.5

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      ||||++|+++|+|++.+|||+|||||+||+||||||+||+|||+|||. +...    +|||.|.+|+.|..|+|+||+||
T Consensus        16 ~~GQ~~iv~tL~NAi~~~ri~HAYLF~GpRGtGKTS~ARIfAKaLNC~-~~~~----~PCn~C~~C~~i~~g~~~DviEi   90 (363)
T TIGR02397        16 VIGQEHIVKTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ-GPDG----EPCNECESCKEINSGSSLDVIEI   90 (363)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC-CCCC----CCCCCCCHHHHHHCCCCCCEEEE
T ss_conf             235179999999999718966234502859976355899999986588-7877----87777502277652898666886


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4   81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF  160 (369)
Q Consensus        81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~  160 (369)
                      |||||+|||+||+|++++.|+|..|+|||||||||||||++|||||||||||||+||+|||+||+|+|||+||+||||+|
T Consensus        91 DAASN~gVD~IR~l~e~v~y~P~~~kYKvYIIDEVHMLS~~AFNALLKTLEEPP~hV~FIlATTE~~KiP~TIlSRCQrF  170 (363)
T TIGR02397        91 DAASNNGVDDIRELRENVKYAPSKGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRF  170 (363)
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCCCCEEECEEE
T ss_conf             48656878899999873036875544335887323028656899987652279876288873487112055402100031


Q ss_pred             HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHC---CCCHHHHHHCCCCCCHHHHH
Q ss_conf             102454001356787643101345625664456531676420011000111000000---12103220001356777778
Q 537021.9.peg.4  161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCND---KIVTSSVRLMLALADRNRIM  237 (369)
Q Consensus       161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~---~i~~e~v~~llg~~~~~~i~  237 (369)
                      +|++++.++|.++|++|+++||+++|++||..||+.|+||||||+|+|||+++++++   .|+.++|.+++|.++.+.++
T Consensus       171 ~Fk~i~~~~i~~~L~~I~~~E~I~~e~~AL~~IA~~a~GS~RDAlsllDQ~~~~~~~~DG~i~~~~v~~~lGl~~~~~l~  250 (363)
T TIGR02397       171 DFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSMRDALSLLDQAISFGNGSDGKITYEDVNEMLGLVDEEKLI  250 (363)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHH
T ss_conf             26789989999999999987088317789999999628961068899999998268878865789999983577789999


Q ss_pred             HHHHHHHC-CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC---CCCCCCCCHHHHHHHHHHHHHCCHHH
Q ss_conf             88876301-363346788765430476213578777534899999974574---12234499889999999986299899
Q 537021.9.peg.4  238 DLFGYLIK-GDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPE---MADTLLYSEAENARALQYSKEVSITF  313 (369)
Q Consensus       238 ~Ll~ai~~-~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~---~~~~~~~~~~e~~~i~~~a~~i~~~~  313 (369)
                      ++++++.+ +|..+++..++++.+.|.||..|+.+|+.++|++++++..++   ....+.+...+...+...+..++.++
T Consensus       251 ~l~~~~~~~~d~~~~l~~~~~~~~~G~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~  330 (363)
T TIGR02397       251 ELLEAILNKRDTEEALKILDEILESGVDPEKFLEDLIEFLRDLLLIKKTPDEIEASNLLEILESEQEFLKELAQKLSLEF  330 (363)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf             99999753876889999999998728889899999999999988644046520122443222578889999996169789


Q ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             999999999999983027888999999999995
Q 537021.9.peg.4  314 LSRFWQMILKGISEIEGFSRPMEAVEMVLIRLA  346 (369)
Q Consensus       314 L~~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~  346 (369)
                      +.++++.+.++..+++.+.+|+.+|||+|+|++
T Consensus       331 ~~~~~~~l~~~~~~~~~~~~~~~~lE~~l~~~~  363 (363)
T TIGR02397       331 LLRLIDILLEALKDLKFSNNPRIALEMTLLRLL  363 (363)
T ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf             999999998778732000015899999999849


No 2  
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00  E-value=0  Score=753.54  Aligned_cols=365  Identities=59%  Similarity=0.990  Sum_probs=356.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf             928489999999999828767062010787988889999999996146877-7886658789997799997798778222
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAH-IDVPTVEFEGFGEHCQAIIRGNHVDVVE   79 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~-~~~~~~~~c~~c~~c~~i~~~~~~d~~e   79 (369)
                      +|||++++++|+|++..||++|||||+||+|+||||+||+||++|||+.+. .++|+.+|||.|.+|+.|..|+|+||+|
T Consensus        25 ~~gq~~~~~~l~~~~~~~~~~~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e  104 (600)
T PRK09111         25 LIGQEAMVRTLRNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPCGVGEHCQAIMEGRHVDVIE  104 (600)
T ss_pred             HCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEE
T ss_conf             33859999999999972984204764578987899999999999669887666899889899886589886689987588


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf             45332233455566555445654204652377511566480016789999972122111466506754330356754333
Q 537021.9.peg.4   80 LDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQR  159 (369)
Q Consensus        80 ~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~  159 (369)
                      ||||||+|||+||+|++++.|+|..|+||||||||+||||.+|+|||||||||||+||+|||+||+|+|||+||+||||+
T Consensus       105 ~daas~~~v~~~r~~~~~~~~~p~~~~~kv~iidevhmls~~afnallktleepp~~~~fi~att~~~k~p~ti~src~~  184 (600)
T PRK09111        105 MDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQR  184 (600)
T ss_pred             EECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCHHHHHHHHE
T ss_conf             51554578889999998605388777546999600110579999999987625986549999628534375899854412


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHH
Q ss_conf             21024540013567876431013456256644565316764200110001110000001210322000135677777888
Q 537021.9.peg.4  160 FDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDL  239 (369)
Q Consensus       160 ~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~L  239 (369)
                      |+|++++.++|..+|.+|+.+|+++++++++.+||+.|+||||||||+|||+++++++.++.+.|.++||..++..+++|
T Consensus       185 f~~~~~~~~~~~~~l~~i~~~e~~~~~~~al~~ia~~a~GS~RDaLSlLDQai~~~~~~i~~~~v~~mLGl~d~~~i~~L  264 (600)
T PRK09111        185 FDLRRIEAEVLAAHLARIAEKEGVEVEPDALALIARAAEGSVRDGLSLLDQAIAHGAGEVTAEQVRDMLGLADRARVIDL  264 (600)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHH
T ss_conf             01057999999999999998607686677999999974898421899999999727987569999998688767789999


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             87630136334678876543047621357877753489999997457412234499889999999986299899999999
Q 537021.9.peg.4  240 FGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQ  319 (369)
Q Consensus       240 l~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq  319 (369)
                      +++++.||...++..++++++.|.||..++++|+.++|.+.++|..+...+...+++++...+..+|+.++...|.++||
T Consensus       265 l~~i~~Gd~~~aL~~~~~l~~~G~Dp~~iL~dLLeilh~is~~k~~~~~~~~~~lse~E~~~i~~LA~~ls~~~L~~~wQ  344 (600)
T PRK09111        265 FEALMRGDVAAALAEFRAQYDAGADPVVVLRDLAEFVHLVTRLKIVPDAAEDPSLSEDERTRGAEFAKKLSMRVLSRMWQ  344 (600)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             99998558688999999999859899999999999999999997467510145689999999999985089999999999


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             9999999830278889999999999953304999899999765555
Q 537021.9.peg.4  320 MILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSPEEIARYIVEEK  365 (369)
Q Consensus       320 ~l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~~~s~~~~~~~~~~~~  365 (369)
                      +++++..+++.++||++++||+|+||||+..+|+|+++++++.+..
T Consensus       345 ilLkg~~El~~a~~p~~alEM~LiRL~~~~~lP~peELLKkL~~~~  390 (600)
T PRK09111        345 MLLKGIAEVQGAPRPLAAAEMVLIRLAHAADLPTPDEAIRRLEEGP  390 (600)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
T ss_conf             9998999973089835869999999997233899899999986157


No 3  
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00  E-value=0  Score=724.83  Aligned_cols=361  Identities=36%  Similarity=0.525  Sum_probs=349.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      ||||++++++|+|++.+||+||||||+||+|+||||+||+||++|||.++..    .+|||.|.+|+.|..|+++||+|+
T Consensus        18 vvgQ~~v~~~L~n~i~~~~i~hayLf~GprG~GKTs~Ari~akalnc~~~~~----~~pC~~C~~C~~i~~g~~~Dv~Ei   93 (541)
T PRK05563         18 VVGQEHITTTLKNQIINNRIAHAYLFCGTRGTGKTSTAKIFAKAVNCLNPQD----GEPCNECEICKKINEGLLMDVIEI   93 (541)
T ss_pred             HCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHHCCCCCCEEEE
T ss_conf             2484999999999998499320453038799589999999999957999888----985751488999856898873662


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4   81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF  160 (369)
Q Consensus        81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~  160 (369)
                      |||||+|||+||++++++.|.|.+|+||||||||+||||.+|||||||||||||+||+|||+||+|+|+|+||+||||+|
T Consensus        94 daas~~gvd~iR~~~~~~~~~p~~~~~Kv~IiDEvhmls~~a~nallKtlEePp~~~~Filatte~~ki~~tI~SRcq~f  173 (541)
T PRK05563         94 DAASNNGVDDIREIIENVKYPPQEGKYKVYIMDEVHMLSQGAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRF  173 (541)
T ss_pred             CCCCCCCHHHHHHHHHHCEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHEEEE
T ss_conf             44444788999999976104876787059999772338999999999998548777569997698442745567421357


Q ss_pred             HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf             10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4  161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF  240 (369)
Q Consensus       161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll  240 (369)
                      +|++++.++|..+|++|+++||++++++++.+||+.|+||||||+|+|||++++++++++.++|..++|.++.+.+++++
T Consensus       174 ~f~~i~~~~i~~~L~~I~~~E~i~~~~~al~lIa~~s~GsmRDAlslLdQ~is~~~~~it~~~v~~~lG~~~~~~l~~l~  253 (541)
T PRK05563        174 DFKRIKVKDIFKRLRKIVEEQGIFADDKSLNLIARMSDGAMRDALSILDQAISMGDGKVDYDDVVSMLGLVTNENLFDIT  253 (541)
T ss_pred             EEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf             75438999999999999998499987899999997459977889999999998359986699999996899989999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             76301363346788765430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4  241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM  320 (369)
Q Consensus       241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~  320 (369)
                      +++.++|...++..+++++..|.|+..|+.+|+.++|+++++|..++..+.+.+++++...+..+++.++.+.|.++|+.
T Consensus       254 ~~i~~~d~~~~l~~~~~i~~~G~d~~~fl~dLi~~~R~lll~k~~~~~~~~l~~~~e~~~~l~~~a~~~~~~~l~~~~~~  333 (541)
T PRK05563        254 DSIIEKDIEKSMEIIDDIVLSGKDIYNFIKDLITHFRNLLMVKVSSNPEEILDMSEENIELLKEQSKKIRIEEIMRCIRI  333 (541)
T ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             99985899999999999998699999999999999999999760697376521799999999999970899999999999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             999999830278889999999999953304999899999765555
Q 537021.9.peg.4  321 ILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSPEEIARYIVEEK  365 (369)
Q Consensus       321 l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~~~s~~~~~~~~~~~~  365 (369)
                      +.++..+++.+++|+++|||+++|||++...++.+.+.+++....
T Consensus       334 L~~~~~~lk~s~~pr~~lEm~likl~~~~~~~s~e~ll~ri~~LE  378 (541)
T PRK05563        334 LQEAEEQSKWSKQPRIYLELAIIKMCKIEYDTSKEVLLSRINKLE  378 (541)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             999999961489814999999999853466887789999998887


No 4  
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00  E-value=0  Score=715.44  Aligned_cols=360  Identities=37%  Similarity=0.631  Sum_probs=344.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      +|||++++++|++++..||+||||||+||+|+||||+||+||++|||..+....|+.+|||.|.+|+.|..|+|+||+|+
T Consensus        23 liGQ~~~~~~l~n~i~~~~~~~aylf~G~rG~GKTt~Ari~ak~lnc~~~~~~~~~~~~c~~c~~c~~i~~~~~~dv~Ei  102 (507)
T PRK06645         23 LQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEKCTNCISFNNHNHPDIIEI  102 (507)
T ss_pred             HCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEE
T ss_conf             23939999999999973996634774587997889999999999679998888998888888767899865899985996


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4   81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF  160 (369)
Q Consensus        81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~  160 (369)
                      ||||++|||+||+++++++|+|..|+|||||||||||||.+|||||||||||||+||+|||+||+|+|+|+||+||||+|
T Consensus       103 Daas~~gv~~ir~l~~~~~~~p~~~~~kv~iidE~hmls~~a~nallktlEepp~~~~Fi~atte~~kip~ti~srcq~f  182 (507)
T PRK06645        103 DAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRY  182 (507)
T ss_pred             ECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCHHHHHHCEEE
T ss_conf             37888888999999863551787674358995214224899999999974278644389997485364837888543278


Q ss_pred             HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHH---HCCCCHHHHHHCCCCCCHHHHH
Q ss_conf             1024540013567876431013456256644565316764200110001110000---0012103220001356777778
Q 537021.9.peg.4  161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARC---NDKIVTSSVRLMLALADRNRIM  237 (369)
Q Consensus       161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~---~~~i~~e~v~~llg~~~~~~i~  237 (369)
                      +|++++.++|..+|+.|+++|+++++++++.+||+.|+||||||+++|||+++++   ++.++.+.|+++||+.++..++
T Consensus       183 ~~~~i~~~~i~~~l~~i~~~E~~~~~~~al~~ia~~a~Gs~RDalslldqai~~~~~~~~~I~~~~V~~MLGl~Drs~li  262 (507)
T PRK06645        183 DLRRLSFEEIFKLLEYITKQENLKADIEALRIIAYKSEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDLSVII  262 (507)
T ss_pred             EEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHH
T ss_conf             75459979999999999997687777899999998559986789999999999754898702699999983899856799


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             88876301363346788765430476213578777534899999974574122344998899999999862998999999
Q 537021.9.peg.4  238 DLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRF  317 (369)
Q Consensus       238 ~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~  317 (369)
                      +|++.+++||..+++..++++++.|.||..++++|+..+|.+..++..++..  ..+++.+...+..+|+.++...|.++
T Consensus       263 dL~e~Il~Gd~~kaL~~l~~iy~~G~Dp~~iL~DLLeiih~i~~ik~l~~~~--~~l~ese~~ri~~is~ki~~~~L~lf  340 (507)
T PRK06645        263 EFVEYIIERETEKAINLINKLYGSSVNLEIFIESVSDFIAYLNKVKMLPNYS--LPIYESFNDRTKSILDKISLPHLSIL  340 (507)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             9999998299999999999999849999999999999999999997478754--56553079999999983899999999


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             999999999830278889999999999953304999899999765
Q 537021.9.peg.4  318 WQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSPEEIARYIV  362 (369)
Q Consensus       318 lq~l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~~~s~~~~~~~~~  362 (369)
                      ||++.++..+++.++||++++||+++||+|....|++++......
T Consensus       341 WQillKg~eEL~~apnp~~alEM~LIRL~y~~~lP~~~d~~~n~~  385 (507)
T PRK06645        341 WQIYNKGVQEIKISYNQLTETEMLVIKSIYSTSLPLLTDSDGNNQ  385 (507)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             999985799985289888889999999998477998444434443


No 5  
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00  E-value=0  Score=705.03  Aligned_cols=359  Identities=32%  Similarity=0.511  Sum_probs=341.5

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      ||||+++++.|++++++||+||||||+||+|+||||+||+||++|||+++.    ..+|||.|.+|+.+..|+|||++|+
T Consensus        18 vvGQe~vv~~L~nai~~~rl~HAyLFsGprG~GKTt~ArilAk~LnC~~~~----~~~PCg~C~sC~~i~~g~~~DviEi   93 (560)
T PRK06647         18 LEGQDFVVETLKHSIEKNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGP----TIMPCGECFSCKSIDNDSSLDVIEI   93 (560)
T ss_pred             HCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC----CCCCCCCCHHHHHHHCCCCCCEEEE
T ss_conf             039499999999999749977436632899878999999999996599999----9888878878888745999875764


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4   81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF  160 (369)
Q Consensus        81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~  160 (369)
                      ||+|++|||+||+++++++++|.+|+||||||||||+||.+|||||||||||||++|+|||+||+|+||||||+||||+|
T Consensus        94 daasn~~VddIR~l~e~v~~~P~~~~yKV~IIDEahmLt~~A~NALLKtLEEPP~~~~FILaTte~~KI~~TI~SRCQ~f  173 (560)
T PRK06647         94 DGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHF  173 (560)
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHCHHHHHHHHEEE
T ss_conf             36454888999999998632876687069996465655999999999986348875599997799476848999651041


Q ss_pred             HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf             10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4  161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF  240 (369)
Q Consensus       161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll  240 (369)
                      +|++++.++|..+|++|+++|++++|++|+.+||+.|+||||||+++|||+++++++.++.+.|.+++|..+.+.+++++
T Consensus       174 ~Fk~i~~~~I~~~L~~I~~~E~i~~e~~AL~lIa~~a~Gs~RDalslldq~i~~~~~~i~~~~v~~~lG~~~~~~~~~l~  253 (560)
T PRK06647        174 NFRLLSLEKIYEMLKKVCLEDDIKYEDEALKWIAYKSGGSVRDAYTLFDQIVSFSNSDITLEQIRSKMGLTSDEFLEKLS  253 (560)
T ss_pred             ECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf             05559999999999999986798879999999999778958889999999996079977899999986898889999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             76301363346788765430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4  241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM  320 (369)
Q Consensus       241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~  320 (369)
                      +++.++|...++..++++...|.|+.+|+.+++.+||+++++|..........   ...+.+.++++.++.+++.++|++
T Consensus       254 ~~i~~~d~~~~l~~~~~i~~~G~d~~~fl~~li~~~R~lll~k~~~~~~~~~~---~~~e~i~~~a~~~d~~~l~~~~~i  330 (560)
T PRK06647        254 SSILNKDLKELLCVLDAIFLSGVSVEQFLLDCIEFFRELLFLKLGIKNEMFIG---IKAESLPEKLLEFDLNQIERAISV  330 (560)
T ss_pred             HHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCC---CCHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             99994699999999999998099999999999999999999761486243312---318899999974799999999999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             9999998302788899999999999533049998999997655554
Q 537021.9.peg.4  321 ILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSPEEIARYIVEEKK  366 (369)
Q Consensus       321 l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~~~s~~~~~~~~~~~~k  366 (369)
                      +.++..+|+.++||++.|||+++|||++....+++.+++++.+.++
T Consensus       331 l~~~~~dl~~s~~Pk~~lEm~llRml~l~~~~s~~~l~~~~~~~e~  376 (560)
T PRK06647        331 LLETYRDLQFSVNPRYELEINFIKILRLKDYVPNHVLIKQIQDIED  376 (560)
T ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             9989985786899308899999999846789981789999867877


No 6  
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00  E-value=0  Score=704.44  Aligned_cols=347  Identities=35%  Similarity=0.535  Sum_probs=336.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      ||||+++++.|+|++.+||++|||||+||+|+||||+||+||++|||.++..+.   +|||.|.+|+.|..|+|+||+|+
T Consensus        19 vVGQ~~vv~~L~nai~~~ri~HAyLF~GprGtGKTT~ArilAkaLnC~~~~~~~---~pCg~C~~C~~I~~g~~~DViEi   95 (462)
T PRK06305         19 ILGQDAVVTVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQ---EPCNQCAICKEISSGTSLDVIEI   95 (462)
T ss_pred             HCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCCCCHHHHHHHCCCCCCEEEE
T ss_conf             049099999999999849976234303899859999999999996799998888---98876688899863899986864


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4   81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF  160 (369)
Q Consensus        81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~  160 (369)
                      ||+|++|||+||+++++++|+|.+|+|||||||||||||.+|||||||||||||+||+|||+||+|+|||+||+||||+|
T Consensus        96 DaAs~~gVddIRel~e~v~~~P~~~~yKVyIIDEvhmLs~~AfNALLKtLEEPP~~v~FILaTTe~~KIp~TIlSRCQrf  175 (462)
T PRK06305         96 DGASHRGIEDIRQINETVLFTPSKSQYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKM  175 (462)
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHHCCCCCEEEEEEECCHHHCCHHHHHHHHEE
T ss_conf             35534466899999977100886775059998152117999999999986189877499998188142854787654023


Q ss_pred             HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf             10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4  161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF  240 (369)
Q Consensus       161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll  240 (369)
                      +|++++.++|..+|.+|+++|++++|++++.+||+.|+||||||+++|||+++++++.|+.++|.+++|..+++.+++++
T Consensus       176 ~F~~i~~~~I~~~L~~I~~~E~i~~e~~AL~lIA~~a~GsmRDAlslLDQ~i~~~~~~it~~~V~~~lG~v~~~~l~~L~  255 (462)
T PRK06305        176 HLKRIPEETIIDKLALIAQQDGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLSPDTVAKALGLLSQDSLYTLA  255 (462)
T ss_pred             ECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf             32579999999999999998399859999999999858958789999999998479986899999986899889999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             76301363346788765430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4  241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM  320 (369)
Q Consensus       241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~  320 (369)
                      +++..+|..+++..++++++.|.|+..|+++|+.+||++++.+.              ...+..+++.++.+.|.++|++
T Consensus       256 ~ai~~~d~~~~l~~~~~i~~~G~d~~~~l~dL~~~~r~ll~~~~--------------~~~~~~~a~~~~~e~l~~~~~i  321 (462)
T PRK06305        256 EAITTQNYAQALGPVTDALNSGVAPAHFLHDLTLFFRSLLLKQE--------------NSTLSSFASKYSSEQLLEIIDF  321 (462)
T ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC--------------HHHHHHHHHHCCHHHHHHHHHH
T ss_conf             99983899999999999998499999999999999999998626--------------7999999874799999999999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             99999983027888999999999995330499989999976555
Q 537021.9.peg.4  321 ILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSPEEIARYIVEE  364 (369)
Q Consensus       321 l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~~~s~~~~~~~~~~~  364 (369)
                      +.+++.+++.+++|++++||+++||+++...|+++++++.+.+.
T Consensus       322 l~~~~~~l~~a~~~r~~lEm~llrl~~~~~~~~~~~lv~~~~~~  365 (462)
T PRK06305        322 LGESAKHLQLTIFEKTFLETVIIHLIRIYQRPTLSQLVSQIKQP  365 (462)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
T ss_conf             99999995259974799999999999827799989999874275


No 7  
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00  E-value=0  Score=701.33  Aligned_cols=358  Identities=33%  Similarity=0.554  Sum_probs=335.1

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      ||||+++++.|+|++.+||+||||||+||+|+|||++||+||++|||+++..    .+|||.|++|+.|..|+|||++|+
T Consensus        18 vvGQ~~v~~~L~nai~~~ri~HAyLF~GprGtGKts~Ari~AkaLnC~~~~~----~~pC~~C~~C~~i~~g~~~DviEi   93 (563)
T PRK06674         18 VVGQEHVTKTLQNALLQEKVSHAYLFSGPRGTGKTSIAKVFAKAVNCEHAPV----AEPCNECPSCLGITNGSISDVLEI   93 (563)
T ss_pred             HCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHHCCCCCCEEEE
T ss_conf             2480999999999998499650343128998689999999999857999999----887766878999855899877985


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4   81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF  160 (369)
Q Consensus        81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~  160 (369)
                      |++|++|||+||++.++++|+|++|+||||||||||+||.+|||||||||||||++|+|||+||+|++|||||+||||+|
T Consensus        94 Daasn~gVd~IR~i~~~v~~~P~~~~yKV~IIDeah~Lt~~A~NALLKtLEEPP~~viFILaTtep~ki~~TI~SRCQrf  173 (563)
T PRK06674         94 DAASNNGVDEIRDIRDKVKFAPSAVEYKVYIIDEVHMLSIGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRF  173 (563)
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCHHHHHHHEEE
T ss_conf             25555787999999998264886787379998545637999999999986388756499996599475847887331031


Q ss_pred             HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf             10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4  161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF  240 (369)
Q Consensus       161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll  240 (369)
                      +|++++.++|..+|++|+++||+++|++++.+||+.|+||||||+|+|||++++++++++.++|..++|..+.+.+++++
T Consensus       174 ~F~ri~~~~i~~rL~~I~~~E~i~~~~~aL~~Ia~~a~GsmRDAlsiLdQ~~s~~~~~i~~~~v~~~lG~~~~~~~~~l~  253 (563)
T PRK06674        174 DFRRISVNDIVERLSTVVTNEGTQVEDEALQIIARAADGGMRDALSLLDQAISFSDERVTTEDVLAVTGAVSQQYLGNLV  253 (563)
T ss_pred             ECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf             27889999999999999998499987889999999769978899999999997159976899999986899889999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             76301363346788765430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4  241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM  320 (369)
Q Consensus       241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~  320 (369)
                      +++.++|...++..+++++..|.|+.+|+.+|+.++|+++++|..++........ ...+.+..+++.++.+.|+++++.
T Consensus       254 ~~i~~~d~~~~l~~~~~~~~~G~d~~~~~~dl~~~~r~~l~~k~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~i~~  332 (563)
T PRK06674        254 ECIRENDVSRALRIIDEMMGQGKDPVRLMEDFIYYYRDMLLYQTAPQLEHMLERV-MVDEQFRMLSEEMPPEVIYEIIHT  332 (563)
T ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             9998489999999999999879999999999999999988742379567654311-154999999852899999999999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC-----HHHHHHHHHH
Q ss_conf             999999830278889999999999953304999-----8999997655
Q 537021.9.peg.4  321 ILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPS-----PEEIARYIVE  363 (369)
Q Consensus       321 l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~~~s-----~~~~~~~~~~  363 (369)
                      +.++..+++.+.+|++.+||+++|||+....++     .+.+.+++..
T Consensus       333 l~~~~~~~r~s~~~~~~lE~~~vkl~~~~~~~~~~~~~~~~l~~~i~~  380 (563)
T PRK06674        333 LSKSQQEMKWTNHPRIFLEVVMVQLCQQFMMQANGADRLQAIMNRMQQ  380 (563)
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             999999961478821889999999953035887775106789999999


No 8  
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00  E-value=0  Score=698.43  Aligned_cols=347  Identities=36%  Similarity=0.549  Sum_probs=333.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf             9284899999999998287670620107879888899999999961468777-886658789997799997798778222
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHI-DVPTVEFEGFGEHCQAIIRGNHVDVVE   79 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~-~~~~~~~c~~c~~c~~i~~~~~~d~~e   79 (369)
                      ||||+++++.|+|++..||++|||||+|++|+||||+||+|||+|||.+... .+++.+|||+|.+|+.|..|+|+||+|
T Consensus        18 ~vGQ~~v~~~l~na~~~~r~~haylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~C~~i~~g~~~d~~E   97 (721)
T PRK12323         18 LVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRACTEIDAGRFVDYIE   97 (721)
T ss_pred             HCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEE
T ss_conf             32859999999999971997544750279988898999999999768998667898788787765468775689876477


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf             45332233455566555445654204652377511566480016789999972122111466506754330356754333
Q 537021.9.peg.4   80 LDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQR  159 (369)
Q Consensus        80 ~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~  159 (369)
                      ||+|||+|||+||+|++++.|+|..|+||||||||+||||+.|||||||||||||+||+|||+||+|+||+.||+||||+
T Consensus        98 iDaas~~~v~~~r~l~~~~~y~P~~~~~KvyiiDevhmls~~afnalLKtlEePP~hv~FilaTT~~~Kip~TilSRc~~  177 (721)
T PRK12323         98 MDAASNRGVDEMAQLLDQAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQ  177 (721)
T ss_pred             EECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCHHHHHHHHH
T ss_conf             43676788899999998545588766446999854000589999999984017975538999438634485889877654


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHH
Q ss_conf             21024540013567876431013456256644565316764200110001110000001210322000135677777888
Q 537021.9.peg.4  160 FDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDL  239 (369)
Q Consensus       160 ~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~L  239 (369)
                      |+|++++.++|..+|.+|+.+|++.+|++++.+||+.++|||||||++|||+++|++++++.+.|..+||..+++.+++|
T Consensus       178 f~~~~~~~~~i~~~l~~i~~~E~i~~~~~al~~ia~~a~Gs~RDalslldQaia~~~g~~~~~~v~~mlg~~d~~~~~~l  257 (721)
T PRK12323        178 FNLKQMPPGHIVSHLDAILGQEGIGHEGNALRLLAQAAHGSMRDALSLTDQAIAYSAGNVSEEAVRGMLGAIDQRYLVRL  257 (721)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHH
T ss_conf             23478999999999999999839977999999999975896476888999999865896269999998688877899999


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             87630136334678876543047621357877753489999997457412234499889999999986299899999999
Q 537021.9.peg.4  240 FGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQ  319 (369)
Q Consensus       240 l~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq  319 (369)
                      ++++.++|...++..++++...|.|+..+|.+|+..+|++.+.+..+....   ....+...+..+++.++.++++.+||
T Consensus       258 l~al~~~d~~~~~~~~~~~~~~~~d~~~~l~~l~~~lh~ia~~q~~p~~~~---~~~~~~~~~~~la~~~~~e~~Ql~yq  334 (721)
T PRK12323        258 LDALAAEDGAAVLAIADEMADRSLSFAGALQDLASLLSKVALAQRVPAAVQ---DDWPEADDIRRLAGVFDAQAVQLFYQ  334 (721)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             999995589999999999998688999999999999999999985620013---55500899999996299999999999


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             9999999830278889999999999953304
Q 537021.9.peg.4  320 MILKGISEIEGFSRPMEAVEMVLIRLAHAVQ  350 (369)
Q Consensus       320 ~l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~  350 (369)
                      +.+.++++|...++++..|||+||||..+..
T Consensus       335 i~l~gr~dl~~ap~~~~g~eM~lLRmlaf~p  365 (721)
T PRK12323        335 VANLGRSELALAPDEYAGFTMTLLRMLAFNP  365 (721)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
T ss_conf             9983176651198802509999999985698


No 9  
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00  E-value=0  Score=690.16  Aligned_cols=360  Identities=32%  Similarity=0.512  Sum_probs=340.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCC--CCCCC
Q ss_conf             9284899999999998287670620107879888899999999961468777886658789997799997798--77822
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGN--HVDVV   78 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~--~~d~~   78 (369)
                      ||||+++++.|+|++.+||++|||||+||+|+||||+||+||++|||++..    +.+|||+|.+|+.|..|+  |+||+
T Consensus        17 viGQe~v~~~L~~Ai~~gri~HAYLFsGprG~GKTt~ARilAkaLNC~~~~----~~~PCg~C~sC~~i~~g~~~~~Dvi   92 (775)
T PRK07764         17 VVGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCAQGP----TSTPCGVCDSCVALAPGGPGSLDVV   92 (775)
T ss_pred             HCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC----CCCCCCCCHHHHHHHCCCCCCCCEE
T ss_conf             228599999999999819976337623788878889999999996689999----9898888763788863898888668


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf             24533223345556655544565420465237751156648001678999997212211146650675433035675433
Q 537021.9.peg.4   79 ELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQ  158 (369)
Q Consensus        79 e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq  158 (369)
                      |||++||++||+||+|++++.|+|++|+||||||||+||||.++||||||||||||+||+|||+||+|+||++||+||||
T Consensus        93 EiDAAS~~gVddiReL~e~~~y~P~~~ryKVyIIDEaHmls~~afNALLKtLEEPP~hvvFIlaTTep~kip~TI~SRcq  172 (775)
T PRK07764         93 EIDAASHGGVDDARELRERAFFAPAQSRYRIFIIDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVIGTIRSRTH  172 (775)
T ss_pred             EECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHCHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCHHHHHHCC
T ss_conf             73156556889999999854768767863599985354407999999988622786462799954873547167764102


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHH-CCCCHHHHHHCCCCCCHHHHH
Q ss_conf             3210245400135678764310134562566445653167642001100011100000-012103220001356777778
Q 537021.9.peg.4  159 RFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCN-DKIVTSSVRLMLALADRNRIM  237 (369)
Q Consensus       159 ~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~-~~i~~e~v~~llg~~~~~~i~  237 (369)
                      +|+|++++.++|..+|.+|+.+||+++|++++.+|++.++||||||||+|||++++.+ +.++++.+..+||..+...+.
T Consensus       173 ~f~Fr~i~~~~~~~~l~~i~~~E~i~~~~~al~li~r~~~Gs~RDalS~ldQl~a~~~~~~v~~~~a~~llG~~~~~~l~  252 (775)
T PRK07764        173 HYPFRLVPPGTMRPYLERICAQEGVVVDDAVLPLVIRAGGGSPRDTLSVLDQLLAGAGDDGVTYERAVALLGVTDVALID  252 (775)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHHCCCCHHHHH
T ss_conf             34526699999999999999983998798999999998289667689999999840488841099999985888589999


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCHHHHHHHHHHHHHCCHHHHH
Q ss_conf             88876301363346788765430476213578777534899999974574122--3449988999999998629989999
Q 537021.9.peg.4  238 DLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMAD--TLLYSEAENARALQYSKEVSITFLS  315 (369)
Q Consensus       238 ~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~--~~~~~~~e~~~i~~~a~~i~~~~L~  315 (369)
                      ++++++..+|...++..++++++.|.|+.+|..+|+.++|||++++..++...  +.....++.+.+..++..++...|.
T Consensus       253 ~~~~al~~~d~~~~~~~v~~~~~~G~d~~rf~~dLl~~~Rdl~~~~~~~~~~~~~l~~~~~~~~~~~~~qa~~~~~~~l~  332 (775)
T PRK07764        253 DAVDALAAGDGAALFGVVDRVIEAGHDPRRFAEDLLERFRDLIVLQAVPDAAERGLVDAPEDVLDRMREQAARLGAAELT  332 (775)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHH
T ss_conf             99999983789999999999998287889999999999999999986106665125568888999999999860999999


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             9999999999983027888999999999995330499989999976555
Q 537021.9.peg.4  316 RFWQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSPEEIARYIVEE  364 (369)
Q Consensus       316 ~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~~~s~~~~~~~~~~~  364 (369)
                      ++.+++..+..+|+...+|||.||+++.||.......+...+..++...
T Consensus       333 r~a~~~~~~l~~m~ga~~prl~le~~~ar~l~p~~~~~~~~~~~r~~~~  381 (775)
T PRK07764        333 RYAEVVNAGLGEMRGATSPRLLLELLCARLLLPSASDTERALLARVERL  381 (775)
T ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             9999999999874278975689999999870777674357899889987


No 10 
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed
Probab=100.00  E-value=0  Score=690.81  Aligned_cols=343  Identities=38%  Similarity=0.638  Sum_probs=330.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      ||||+++++.|.|++..||++|||||+|++|+||||+||+|||+|||+.+.    +.+|||+|.+|+.|..|+|+|++||
T Consensus        18 ~~gq~~~~~~l~~~~~~~~~~~a~l~~g~rg~gkt~~ar~~ak~lnc~~~~----~~~pc~~c~~c~~i~~~~~~d~~e~   93 (705)
T PRK05648         18 MVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNCETGV----SSTPCGECSVCREIDEGRFVDLIEV   93 (705)
T ss_pred             HCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC----CCCCCCCCHHHHHHHCCCCCCEEEE
T ss_conf             328199999999999709863046500789888989999999986778999----8897877600466624897763445


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4   81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF  160 (369)
Q Consensus        81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~  160 (369)
                      |+|||+|||++|+|++++.|+|..|+||||||||+|||+..+||||||||||||+||+|||+||+|+||+.||+||||+|
T Consensus        94 d~as~~~v~~~r~~~~~~~~~p~~~~~kv~~idevhmls~~~fnallktleepp~~v~f~~att~~~k~p~t~~src~~~  173 (705)
T PRK05648         94 DAASRTKVEDTRELLDNVQYAPTRGRYKVYLIDEVHMLSSHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQF  173 (705)
T ss_pred             CCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCHHHHHHHHHC
T ss_conf             15544788999999985551776774579998426541799999998740479754599984287353758999766430


Q ss_pred             HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf             10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4  161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF  240 (369)
Q Consensus       161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll  240 (369)
                      +|++++.++|..+|..|+.+|++.++++++.+|++.++||||||||+|||+++|+++.++.++|..+||..++..+++++
T Consensus       174 ~~~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~~~~~~~g~~rd~ls~~dq~~~~~~~~~~~~~v~~mlg~~~~~~~~~l~  253 (705)
T PRK05648        174 SLKNMSPERVVEHLSHVLGAENVPFEEDALWLLGRAADGSMRDAMSLTDQAIAFGEGKVLAADVRAMLGTLDHGQVYGVL  253 (705)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf             23689999999999999997599778999999999748967779999999986068840799999985888778999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             76301363346788765430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4  241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM  320 (369)
Q Consensus       241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~  320 (369)
                      +++.++|...++..++++...|.|+..+|..|+..+|.+.+.+..++..+   ....+...+..+++.++.++++.+||+
T Consensus       254 ~a~~~~d~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~q~~p~~~~---~~~~~~~~~~~lA~~~s~E~vQL~YQi  330 (705)
T PRK05648        254 QALLEGDARALLEAVRHLAEQGPDWNGVLAEMLNVLHRVAIAQALPEAVD---NGQGDRERVLALAQALPAEDVQFYYQM  330 (705)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHC---CCCCHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             99995689999999999998588999999999999999999984502102---453049999999985799999999999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             999999830278889999999999953304
Q 537021.9.peg.4  321 ILKGISEIEGFSRPMEAVEMVLIRLAHAVQ  350 (369)
Q Consensus       321 l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~  350 (369)
                      ++.++++|..++++|+.|||+||||.-+..
T Consensus       331 ~l~gr~dL~lAPd~r~g~EM~LLRmLAFrP  360 (705)
T PRK05648        331 GLIGRRDLPLAPDPRGGFEMVLLRMLAFRP  360 (705)
T ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             984020046699703649999999986587


No 11 
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00  E-value=0  Score=688.93  Aligned_cols=344  Identities=36%  Similarity=0.606  Sum_probs=329.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      ||||+++++.|+|++..||++|||||+||+|+||||+||+|||+|||+.+..    .+|||+|.+|+.|..|+|+||+||
T Consensus        18 ~vGQ~~v~~~l~na~~~~r~~haylf~G~rG~GKtt~ari~ak~lnc~~~~~----~~pcg~c~~c~~i~~g~~~d~~ei   93 (643)
T PRK07994         18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT----ATPCGVCDNCREIEQGRFVDLIEI   93 (643)
T ss_pred             HCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHHCCCCCCEEEE
T ss_conf             5387999999999998298663487458998888899999999967999999----997876776898865898875886


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4   81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF  160 (369)
Q Consensus        81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~  160 (369)
                      |+|||+|||+||++++++.|+|..|+||||||||+||||++|||||||||||||+||+|||+||+|+||++||+||||+|
T Consensus        94 daas~~~vd~~rel~~~~~y~p~~~r~kvyiidEvhmls~~afnalLKtlEePp~hv~filaTT~~~k~p~TilSRC~~f  173 (643)
T PRK07994         94 DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQF  173 (643)
T ss_pred             ECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCCCHHCEEEEECCCHHHCCHHHHHHHHHE
T ss_conf             36777888999999984466887785369997221015899999999862378610089986077454847899777650


Q ss_pred             HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf             10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4  161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF  240 (369)
Q Consensus       161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll  240 (369)
                      +|++++.++|..+|.+|+.+|++.+|++++.+||+.++||||||+|+|||+++|++++++.+.|..+||..+++.+++++
T Consensus       174 ~~~~~~~~~i~~~l~~i~~~e~i~~~~~al~~ia~~a~gs~rdalsl~dq~i~~~~~~~~~~~v~~mlg~~d~~~~~~ll  253 (643)
T PRK07994        174 HLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAADGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLV  253 (643)
T ss_pred             ECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf             01669999999999999997599878899999999747865668889999998658974799999985899878999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             76301363346788765430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4  241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM  320 (369)
Q Consensus       241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~  320 (369)
                      +++..+|...++..++++...|.|+..+|+.|+..+|.+.+.+..++..+..  ..+....+..+++.++.++++.+||+
T Consensus       254 ~al~~~d~~~~~~~~~~~~~~~~~~~~~l~~l~~~lh~ia~~Q~~p~~~~~~--~~~~~~~~~~La~~~~~e~vQL~YQI  331 (643)
T PRK07994        254 EALVEANGERVMALINEAAARGIEWEALLVEMLSLLHRIAMVQLSPAALGND--MAAIELRMRELARTIPPTDIQLYYQT  331 (643)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCC--CHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             9999569999999999999868899999999999999999998471210254--30167999999984799999999999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             999999830278889999999999953304
Q 537021.9.peg.4  321 ILKGISEIEGFSRPMEAVEMVLIRLAHAVQ  350 (369)
Q Consensus       321 l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~  350 (369)
                      ++.++++|..+++++..|||+||||.-+..
T Consensus       332 al~GrkdL~lAPd~r~gfEMtLLRmLAF~P  361 (643)
T PRK07994        332 LLIGRKELPYAPDRRMGVEMTLLRALAFHP  361 (643)
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             983020046698714539999999983688


No 12 
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00  E-value=0  Score=689.57  Aligned_cols=343  Identities=36%  Similarity=0.604  Sum_probs=329.6

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      ||||+++++.|+|++..||++|||||+||+|+||||+||+|||+|||+++...    +|||.|.+|+.|..|+|+|++||
T Consensus        18 ~vGQ~~v~~~L~nal~~~rl~haylf~G~rGvGKTt~Ari~Ak~lNC~~~~~~----~pCg~C~~C~~i~~g~~~D~~Ei   93 (704)
T PRK08691         18 LVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHG----EPCGVCQSCTQIDAGRYVDLLEI   93 (704)
T ss_pred             HCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHCCCCCCEEEE
T ss_conf             41869999999999981997523750278987888999999999679999999----97877776787855899874774


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4   81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF  160 (369)
Q Consensus        81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~  160 (369)
                      |++||+|||+||+|++++.|+|..|+||||||||+||||.+|||||||||||||+||+|||+||+|+||+.||+||||+|
T Consensus        94 DaAs~~~vdd~R~l~~~~~y~P~~~~yKVyiiDEvhmLs~~afNAlLKtLEEPP~~v~FilaTTdp~Klp~TIlSRC~~f  173 (704)
T PRK08691         94 DAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQF  173 (704)
T ss_pred             ECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCHHHHHHHHHH
T ss_conf             24544588999999985346886785359998315443899999999861479756089985488464758999888771


Q ss_pred             HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf             10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4  161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF  240 (369)
Q Consensus       161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll  240 (369)
                      +|++++.++|..+|.+|+.+|++++|++++.+||+.++||||||+|+|||+++|++++++.+.|..|||..+++.+++|+
T Consensus       174 ~l~~~~~~~i~~~L~~i~~~E~i~~e~~al~~ia~~a~Gs~RDalslldQaia~~~g~~~~~~v~~mLG~~d~~~~~~ll  253 (704)
T PRK08691        174 VLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELL  253 (704)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf             02689999999999999998398568999999999757857779889999999648962699999985888778999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             76301363346788765430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4  241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM  320 (369)
Q Consensus       241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~  320 (369)
                      +++.++|...++..++++...|.|+..+|.+|+..+|.+.+++..+.....   ...+...+..+++.++.++++.+||+
T Consensus       254 ~al~~~d~~~~~~~~~~~~~~~~~~~~~l~~l~~~lh~ia~~q~~p~~~~~---~~~~~~~~~~la~~~~~e~~Ql~Yqi  330 (704)
T PRK08691        254 TGIINQDGAALTAKAQEMAACAVGFDNALGELAILLQQLALIQAVPNALAH---DDPDSDILHRLAQTISGEQIQLYYQI  330 (704)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHCCC---CCCCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             999955899999999999986899999999999999999999858131045---67108999999970899999999999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             999999830278889999999999953304
Q 537021.9.peg.4  321 ILKGISEIEGFSRPMEAVEMVLIRLAHAVQ  350 (369)
Q Consensus       321 l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~  350 (369)
                      .+.++++|...++++..|||+||||.-+..
T Consensus       331 ~l~gr~dl~~ap~~~~g~eM~lLRmlaF~P  360 (704)
T PRK08691        331 AVHGKRDLSLAPDEYAGFMMTLLRMLAFAP  360 (704)
T ss_pred             HHHCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             982202255699702539999999984588


No 13 
>PRK08770 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00  E-value=0  Score=684.46  Aligned_cols=341  Identities=40%  Similarity=0.631  Sum_probs=327.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      ||||+++++.|.|++..||++|||||+|++|+||||+||+|||+|||+.+..    .+|||+|.+|+.|..|+|+|++||
T Consensus        18 ~~gq~~~~~~l~~~~~~~~~~~a~lf~g~rg~gkt~~ar~~a~~lnc~~~~~----~~pc~~c~~c~~i~~~~~~d~~e~   93 (663)
T PRK08770         18 LVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNCETGTS----ADPCGQCPACLDIDAGRYIDLLEI   93 (663)
T ss_pred             HCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHHCCCCCCEEEE
T ss_conf             2285999999999997099740476227998888899999999867899999----997877877898854898865886


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4   81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF  160 (369)
Q Consensus        81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~  160 (369)
                      |+|||+|||++|+|++++.|.|..|+||||||||+||||..+||||||||||||+||+|||+||+|+||+.||+||||+|
T Consensus        94 daas~~~v~~~r~~~~~~~~~p~~~~~kvy~idevhmls~~~fna~lktleepp~~v~f~~att~~~k~p~t~~src~~f  173 (663)
T PRK08770         94 DAASNTGVDDVREVIENAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQF  173 (663)
T ss_pred             ECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCHHHHHHHHHC
T ss_conf             46765888999999984435887774369997004332899999998740278644289985487333748999888763


Q ss_pred             HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf             10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4  161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF  240 (369)
Q Consensus       161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll  240 (369)
                      +|++++.++|..+|.+|+.+|++.+|++++.+|++.++||||||||+|||+++|+++.++.+.|..+||..+++.+++|+
T Consensus       174 ~~~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~~~~~~~gs~rd~lsl~~q~~~~~~~~~~~~~v~~mlg~~~~~~~~~l~  253 (663)
T PRK08770        174 NLKRLDEDQIQGQMTRILAAEQIESDPSAIVQLSKAADGSLRDGLSLLDQAIAYAGGALREDVVRTMLGTVDRTQVGAML  253 (663)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf             43779999999999999998399769999999999747856778889999998668976899999984888878999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             76301363346788765430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4  241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM  320 (369)
Q Consensus       241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~  320 (369)
                      +++.++|...++..++++...|.|+..+|..|+..+|.+.+.+..++...     ..+...+..++++++.++++.+||+
T Consensus       254 ~al~~~d~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~a~~q~~~~~~~-----~~~~~~~~~lA~~~~~e~vQL~YQI  328 (663)
T PRK08770        254 QALADGDGARLLQVVAALAEFSPDWSGVLEALAEALHRIQVQQLVPSVAF-----VGDGIDPTPFAAQLRPEVVQLWYQM  328 (663)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC-----CCCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             99996689999999999998688999999999999999999984630124-----5435679999972899999999999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             999999830278889999999999953304
Q 537021.9.peg.4  321 ILKGISEIEGFSRPMEAVEMVLIRLAHAVQ  350 (369)
Q Consensus       321 l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~  350 (369)
                      .+.++++|..+++++..|||+||||.-+-.
T Consensus       329 aL~Gr~dL~~APd~~~gfeM~LLRmlafRP  358 (663)
T PRK08770        329 ALNGRRDLYLAPSPRAGFEMAVLRMLAFRP  358 (663)
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             983043255698667869999999842797


No 14 
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00  E-value=0  Score=685.35  Aligned_cols=343  Identities=36%  Similarity=0.578  Sum_probs=329.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      ||||+++++.|+|++..||++|||||+||+|+||||+||+|||+|||+.+..    .+|||+|.+|+.|..|+|+|++||
T Consensus        18 ~vGQ~~v~~~L~nal~~~rl~haylf~G~rGvGKTt~ARi~Ak~lNC~~~~~----~~pcg~C~~C~~i~~g~~~d~~Ei   93 (717)
T PRK08853         18 VVGQSHVLTALENALAHNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETGIT----STPCGQCATCKEIDEGRFVDLLEI   93 (717)
T ss_pred             HCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC----CCCCCCCCCHHHHHCCCCCCEEEE
T ss_conf             1385999999999997099740576108898889899999999867899999----997888702676744787752454


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4   81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF  160 (369)
Q Consensus        81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~  160 (369)
                      |+|||+|||+||+|++++.|+|..|+||||||||+||||..|||||||||||||+||+|||+||+|+||+.||+||||+|
T Consensus        94 DaAs~~~vdd~rel~~~~~y~p~~~~yKvyiiDEvHmls~~afnAlLKtlEEPP~hv~FilaTT~~~kip~TilSRc~~f  173 (717)
T PRK08853         94 DAASRTKVEDTRELLDNVQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQF  173 (717)
T ss_pred             CCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCHHHHHHHHHC
T ss_conf             05656788999999985554887785479998305443899999998760378756489984387343738898765442


Q ss_pred             HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf             10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4  161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF  240 (369)
Q Consensus       161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll  240 (369)
                      +|++++.++|..+|.+|+.+|+++++++++.+||+.++||||||+|+|||++++++++++.+.|..+||..++..+++|+
T Consensus       174 ~l~~~~~~~i~~~l~~i~~~E~i~~~~~al~~ia~~a~Gs~Rdalsl~dqaia~~~g~~~~~~v~~mlg~~d~~~~~~ll  253 (717)
T PRK08853        174 HLKPISVDQIHQQLDFVLDKEQVSAEARALGLIAHAADGSMRDALSLTDQAIALGNGQVTTDIVSHMLGTLDTDQAIHLL  253 (717)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf             32689999999999999997598769999999999768837788889999999658971699999985888778999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             76301363346788765430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4  241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM  320 (369)
Q Consensus       241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~  320 (369)
                      +++.++|...++..++++...|.|+..+|++|+..+|.+.+.+..+...+.   ...+...+..++++++.++++.+||+
T Consensus       254 ~al~~~d~~~~~~~~~~~~~~~~~~~~~l~~l~~~lh~ia~~q~~p~~~~~---~~~~~~~i~~la~~~~~e~~Ql~YQi  330 (717)
T PRK08853        254 EAISSKQPQTAMDCIQQLADNGVEWDGLLQQLATQLHRIAMYQALPATLDK---AQPDAERIELLSKALSPQDVQLYYQI  330 (717)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHCC---CCCCHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             999955899999999999986889999999999999999999848142124---46418999999983899999999999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             999999830278889999999999953304
Q 537021.9.peg.4  321 ILKGISEIEGFSRPMEAVEMVLIRLAHAVQ  350 (369)
Q Consensus       321 l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~  350 (369)
                      .+.++++|...++++..|||+||||.-+..
T Consensus       331 ~l~gr~dl~~apd~~~g~eM~lLRmlaF~P  360 (717)
T PRK08853        331 ALKGRQDLPLAPNGRIGMEMIVLRMMAFRP  360 (717)
T ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             970301156699636769999999972587


No 15 
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00  E-value=0  Score=684.37  Aligned_cols=343  Identities=37%  Similarity=0.615  Sum_probs=329.1

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      ||||+++++.|+|++..||++|||||+|++|+||||+||+|||+|||+.+.    +.+|||+|.+|+.|..|+|+||+||
T Consensus        18 ~vGQ~~v~~~l~nal~~~rl~haylf~G~rGvGKTt~aRi~Ak~lnC~~~~----~~~pcg~C~~C~~i~~g~~~d~iEi   93 (816)
T PRK07003         18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGV----TSQPCGVCRACREIDEGRFVDYVEM   93 (816)
T ss_pred             HCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC----CCCCCCCCHHHHHHHCCCCCCEEEE
T ss_conf             238499999999999709863147511789888889999999986789999----9897877555787755887754786


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4   81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF  160 (369)
Q Consensus        81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~  160 (369)
                      |++||+|||+||+|++++.|+|..|+||||||||+||||+.+||||||||||||+||+|||+||+|+||+.||+||||+|
T Consensus        94 DaAS~~~vd~~r~l~~~~~y~p~~~r~KvyiiDEvHmls~~afnalLKtlEepP~hv~FilaTTd~~k~p~tilSRc~~f  173 (816)
T PRK07003         94 DAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQF  173 (816)
T ss_pred             ECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCHHHHHHHHHC
T ss_conf             35543576899999986224786674479998415433999999999840379866489995588011528898777652


Q ss_pred             HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf             10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4  161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF  240 (369)
Q Consensus       161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll  240 (369)
                      +|++++.++|..+|.+|+.+|++.+|++++.+|++.++||||||||+|||+|+|++++++.+.|..|||..++..++.|+
T Consensus       174 ~l~~~~~~~i~~~l~~i~~~E~i~~e~~al~lia~~a~GsmRDalsl~dQaia~~~g~~~~~~v~~mLG~~d~~~~~~ll  253 (816)
T PRK07003        174 NLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLL  253 (816)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf             23679999999999999998299779999999999767737888859999998469973799999985888778999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             76301363346788765430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4  241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM  320 (369)
Q Consensus       241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~  320 (369)
                      +++.++|...++..++++...|.++..+|++|+..+|.+.+.++.+.....   ...+...+..+++.++.++++.+||+
T Consensus       254 ~al~~~d~~~~~~~~~~~~~~~~~~~~~l~~l~~~lh~ia~~q~~p~~~~~---~~~~~~~~~~la~~~~~e~~Ql~Yqi  330 (816)
T PRK07003        254 DALAAADGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPGSVLD---EWPEAADLRRFAELLSPEQVQLFYQI  330 (816)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHCCC---CCCCHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             999955899999999999986889999999999999999999846100023---46218999999972899999999999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             999999830278889999999999953304
Q 537021.9.peg.4  321 ILKGISEIEGFSRPMEAVEMVLIRLAHAVQ  350 (369)
Q Consensus       321 l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~  350 (369)
                      .+.++++|...++++..|||+||||.-+..
T Consensus       331 ~l~gr~dl~~ap~~~~g~em~llRmlaf~p  360 (816)
T PRK07003        331 ATVGRAELGLAPDEYAGFTMTLLRMLAFEP  360 (816)
T ss_pred             HHHCHHHCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             970344313498811309999999983788


No 16 
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00  E-value=0  Score=680.21  Aligned_cols=339  Identities=38%  Similarity=0.606  Sum_probs=326.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      ||||+++++.|+|++.+||++|||||+|++|+||||+||+|||+|||+.+.    +.+|||+|.+|+.|..|+|+|++||
T Consensus        18 ~vgq~~v~~~l~~a~~~~r~~haylf~g~rg~gktt~ari~ak~lnc~~~~----~~~pcg~c~~c~~i~~g~~~d~~ei   93 (696)
T PRK06872         18 VVGQEHILTALSNGLKENRLHHAYLFSGTRGVGKTSIARLFAKGLNCVHGV----TATPCGECENCKAIEEGNFIDLIEI   93 (696)
T ss_pred             HCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC----CCCCCCCCHHHHHHHCCCCCCEEEE
T ss_conf             238599999999999719863047511789888889999999986789999----9997888622576744787754675


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4   81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF  160 (369)
Q Consensus        81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~  160 (369)
                      |+||++|||++|+|++++.|+|..|+||||||||+|||++.+||||||||||||+||+|||+||+|+||+.||+||||+|
T Consensus        94 daas~~~v~~~r~l~~~~~~~p~~~~~kvy~idevhmls~~~fnallktleepp~~v~f~latt~~~k~p~tilsrc~~f  173 (696)
T PRK06872         94 DAASRTKVEDTRELLDNVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSRCMQF  173 (696)
T ss_pred             ECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCHHHHHHHHHE
T ss_conf             05655788999999984545776775479997005443899999998750279754489984386322748898766530


Q ss_pred             HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf             10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4  161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF  240 (369)
Q Consensus       161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll  240 (369)
                      +|++++.++|..+|.+|+.+|++.+|++++.+||+.++|||||||+++||+++++++.++.+.|..|||..++..++.|+
T Consensus       174 ~~~~~~~~~i~~~l~~i~~~e~~~~~~~al~~~a~~a~gs~rdalsl~dqai~~~~g~~~~~~v~~mlg~~~~~~~~~l~  253 (696)
T PRK06872        174 HLKALDQTQIAQHLEFILTQENIPFESPALEKLAKAAQGSIRDSLSLTDQAIAMSNANITLDVVSNMLGLLDDNQPIDIL  253 (696)
T ss_pred             ECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf             02689999999999999998499779999999999758956778889999999758961699999985888777999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             76301363346788765430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4  241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM  320 (369)
Q Consensus       241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~  320 (369)
                      +++.++|...++..++++...|.|+..+|.+|+..+|.+.+.+..++...       +...+..++++++.++++.+||+
T Consensus       254 ~a~~~~d~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~q~~~~~~~-------~~~~~~~la~~~~~e~~ql~Yqi  326 (696)
T PRK06872        254 YALQQGNGEKLMKVIQAVAEKGGDWDKLLGEIAEKLHQIAMLQLLPQKSS-------EETQLGFLAKHISPEDVQFFYQV  326 (696)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC-------CHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             99995589999999999998688999999999999999999985864578-------54799999985799999999999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             999999830278889999999999953304
Q 537021.9.peg.4  321 ILKGISEIEGFSRPMEAVEMVLIRLAHAVQ  350 (369)
Q Consensus       321 l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~  350 (369)
                      .+.++++|...+++|..|||+||||.-+..
T Consensus       327 ~l~g~~dl~~apd~~~g~eM~lLRmlAFrP  356 (696)
T PRK06872        327 MVSGRKELAFAPNRRIGVEMTLLRALAFHP  356 (696)
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             984120045699646749999999983588


No 17 
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00  E-value=0  Score=676.00  Aligned_cols=339  Identities=36%  Similarity=0.535  Sum_probs=320.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      ||||+++++.|++++.+||+||||||+||+|+|||++|++||++|||.+....    +|||.|.+|+.+..|+|||++|+
T Consensus        17 vvGQe~i~~~L~nal~~~ri~HAyLF~GP~GtGKts~ArifAkaLnC~~~~~~----~pC~~C~~C~~i~~g~~~DviEi   92 (557)
T PRK07270         17 MVGQEVVATTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDG----EPCNNCDICRDITNGSLEDVIEI   92 (557)
T ss_pred             HCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHCCCCCCEEEE
T ss_conf             14819999999999985995404421089986899999999999579998999----98887779999875899974873


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4   81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF  160 (369)
Q Consensus        81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~  160 (369)
                      |++|++|||+||++.++++|+|++|+||||||||||+||.+|||||||||||||++|+|||+|++|++|||||+||||+|
T Consensus        93 daas~~gVd~IRei~~~~~~~P~~~~yKV~IIDEah~Ls~~A~NALLKtLEEPP~~~vFIL~Ttep~kIl~TI~SRCQrf  172 (557)
T PRK07270         93 DAASNNGVDEIRDIRDKSTYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRF  172 (557)
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHCCCCCEEEEEEECCHHHCCHHHHHHHHHC
T ss_conf             47776788999999998423877788389997144534999999899985289987699998499475928887430001


Q ss_pred             HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHH-CCCCHHHHHHCCCCCCHHHHHHH
Q ss_conf             10245400135678764310134562566445653167642001100011100000-01210322000135677777888
Q 537021.9.peg.4  161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCN-DKIVTSSVRLMLALADRNRIMDL  239 (369)
Q Consensus       161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~-~~i~~e~v~~llg~~~~~~i~~L  239 (369)
                      +|++++.++|..+|++|+++||+++|++++.+||+.|+|+||||+|+|||+++++. ++++.++|..++|..+.+.++++
T Consensus       173 ~F~~i~~~~i~~~L~~I~~~E~i~~~~~aL~~Ia~~a~G~mRdAlsiLdQ~~s~~~~~~it~~~v~~~~G~~~~~~l~~l  252 (557)
T PRK07270        173 EFKSIKTKAIREHLAWILDKEGISFEVEALNLIARRAEGGMRDALSILDQALSLSQDNQVTIAIAEEITGSISLLALDDY  252 (557)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHH
T ss_conf             08889999999999999998399869999999999779968789999999997179997679999999689989999999


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             87630136334678876543047621357877753489999997457412234499889999999986299899999999
Q 537021.9.peg.4  240 FGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQ  319 (369)
Q Consensus       240 l~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq  319 (369)
                      ++++..+|...++..+++++..|.|+.+|+.+|+.++||++++|..++...        ...+......++.+.++++++
T Consensus       253 ~~~~~~~d~~~~l~~~~~~~~~G~d~~~~~~dl~~~~Rdll~~k~~~~~~~--------~~~~~~~~~~~~~~~l~~~i~  324 (557)
T PRK07270        253 VAALSQQDATKALAALETIFDSGKSMSRFATDLLTYLRDLLIVKAGGENTH--------HSAVFDENLSLSQDRIFQMID  324 (557)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHH--------HHHHHHHHHCCCHHHHHHHHH
T ss_conf             999981799999999999998699999999999999997674122774555--------567678887069999999999


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             99999998302788899999999999533049
Q 537021.9.peg.4  320 MILKGISEIEGFSRPMEAVEMVLIRLAHAVQL  351 (369)
Q Consensus       320 ~l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~~  351 (369)
                      .+.++..+++.+.+|++.+|++++|||.....
T Consensus       325 ~l~~~~~~~~~~~~p~i~lE~~~~kl~~~~~~  356 (557)
T PRK07270        325 VVTSSLPEIKKGTHPKIYAEMMTIRLAEIEQI  356 (557)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             99999999751478129999999998534565


No 18 
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=100.00  E-value=0  Score=666.71  Aligned_cols=344  Identities=44%  Similarity=0.718  Sum_probs=324.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      +|||+++++.|++++..||++|||||+||+|+||||+||+||++|||++.    ++.+|||+|.+|+.|..|+|+|++||
T Consensus        18 vvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~----~~~ePC~~C~~Ck~I~~g~~~DviEi   93 (515)
T COG2812          18 VVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG----PTAEPCGKCISCKEINEGSLIDVIEI   93 (515)
T ss_pred             HCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCC----CCCCCCHHHHHHHHHHCCCCCCCHHH
T ss_conf             63648999999999980842333651377776710499999999568898----77772253166686514886410113


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4   81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF  160 (369)
Q Consensus        81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~  160 (369)
                      |+|||+|||+||+|++++.|+|++|+||||||||+||||++|+|||||||||||+||+|||+||+|+|+|+||+||||+|
T Consensus        94 DaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f  173 (515)
T COG2812          94 DAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRF  173 (515)
T ss_pred             HHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHCCCCC
T ss_conf             64445486799999987246886666418998318764378888875111368667489985388676840455212202


Q ss_pred             HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf             10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4  161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF  240 (369)
Q Consensus       161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll  240 (369)
                      +|++++.++|..+|..|+.+|++.+|++++..|++.|+||||||+|+|||+++++++.++.+.|..++|..+.+.+.+++
T Consensus       174 ~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~~~It~~~v~~~lG~~~~~~~~~~~  253 (515)
T COG2812         174 DFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGEGEITLESVRDMLGLTDIEKLLSLL  253 (515)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf             22579999999999999874487547999999999828974567778999997067765699999996887789999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             763013633467887654304762135787775348999999745-7412234499889999999986299899999999
Q 537021.9.peg.4  241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYI-PEMADTLLYSEAENARALQYSKEVSITFLSRFWQ  319 (369)
Q Consensus       241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~-~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq  319 (369)
                      +++..+|...++..++++++.|.+|..++.++..++|+++.++.. +........  +.......++.+++..++.++|+
T Consensus       254 ~~i~~~d~~~~~~~~~~l~~~G~~~~~~l~dl~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~l~~~~~  331 (515)
T COG2812         254 EAILKGDAKEALRLINELIEEGKDPEAFLEDLLNFLRDLLLFKQTVPNELQLNTT--EIEERTKELASQISVLNLQRLYQ  331 (515)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCH--HHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             9998227999999999999827489999999999999999998605403210101--46699999998558899999999


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             9999999830278889999999999953304
Q 537021.9.peg.4  320 MILKGISEIEGFSRPMEAVEMVLIRLAHAVQ  350 (369)
Q Consensus       320 ~l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~  350 (369)
                      .+..+..+++.+++|++.+||+++|++....
T Consensus       332 ~~~~~~~e~~~s~~~~~~~E~~lirl~~~~~  362 (515)
T COG2812         332 LLLPGLKELKRSLSPRLGLEMTLIRLLEAAP  362 (515)
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
T ss_conf             9999999861386625799999999875035


No 19 
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00  E-value=0  Score=663.58  Aligned_cols=338  Identities=37%  Similarity=0.607  Sum_probs=322.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      ||||+++++.|++++.+||+||||||+||+|+||||+||+||++|||+++...    +|||.|.+|+.+..|+|||++|+
T Consensus        16 vIGQe~iv~~L~nAi~~~Rl~HAYLFsGPrGvGKTt~ArifAkaLnC~~~~~~----~PCg~C~sC~~i~~g~hpDViEi   91 (523)
T PRK08451         16 LIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFSRALVCEQGPSS----TPCGTCAQCQAALEGRHIDIIEM   91 (523)
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHCCCCCCEEEE
T ss_conf             04949999999999985996715875789986889999999999759999998----98887888999864899985510


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4   81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF  160 (369)
Q Consensus        81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~  160 (369)
                      |++|++|||+||+++++++++|+.|+||||||||||+||.+|||||||||||||++|+|||+||+|++||+||+||||+|
T Consensus        92 Daasn~gID~IReLie~~~~~P~~gryKV~IIDEah~Lt~~A~NALLKTLEEPP~~vvFILaTTep~KLp~TIlSRCQ~f  171 (523)
T PRK08451         92 DAASNRGIDDIRNLIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHF  171 (523)
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCHHHCHHHHHHHHHCC
T ss_conf             55333689999999997235886797279998260304899999999970389878379997599476848887420311


Q ss_pred             HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf             10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4  161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF  240 (369)
Q Consensus       161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll  240 (369)
                      +|++++..+|..+|++|+.+|++++|++++.+||+.|+||||||+++|||+++++++.++.++|..++|..+++.+.+++
T Consensus       172 ~Fk~I~~~~I~~~L~~I~~~E~i~~e~~AL~~IA~~a~GslRDalslLdQ~i~~~~~~i~~~~v~~~lG~~d~~~~~~l~  251 (523)
T PRK08451        172 RFKQIPQNSIISHLKTILNKEGVSYEPEALEILARSGSGSLRDTLTLLDQAIIFCKNAITESKVADMLGLLDPSKIEDFF  251 (523)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf             03379999999999999998399879999999999778948689879999998479987799999985888999999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             76301363346788765430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4  241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM  320 (369)
Q Consensus       241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~  320 (369)
                      +++.++|..++++.+..+  .|+++..++++++.++|+.++.+.                      ..++.--+.|+|++
T Consensus       252 ~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~r~~~i  307 (523)
T PRK08451        252 QAILNKDKEKLFELLAEL--EDYEAEMVLDEMLLFLKEKLLSKD----------------------SEFSILIYERFFRI  307 (523)
T ss_pred             HHHHHCCHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHCCC----------------------CCCCHHHHHHHHHH
T ss_conf             999945899999999998--531899999999999999971578----------------------54378999999999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             9999998302788899999999999533049998999997655554
Q 537021.9.peg.4  321 ILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSPEEIARYIVEEKK  366 (369)
Q Consensus       321 l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~~~s~~~~~~~~~~~~k  366 (369)
                      +.++...++.++|+..++++++++|++....+.+++.++.+..++.
T Consensus       308 l~~~~~~~~~~~~~~~~l~~~~~km~e~~~~~~~~~~i~~l~~~~~  353 (523)
T PRK08451        308 LSSAKSLLKEGADDGFVLLLMLFKMKEALKLKEIDDAIEELEQEKP  353 (523)
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
T ss_conf             9999998630788612499999999860365888999999862577


No 20 
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00  E-value=0  Score=632.83  Aligned_cols=338  Identities=33%  Similarity=0.541  Sum_probs=314.5

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      ||||++++++|++++.+||+||||||+||+|+||||+||+||++|||.++...   ..|||.|.+|    .++++|++|+
T Consensus        20 VIGQe~Vv~tL~nAI~~gRIaHAYLF~GPRGvGKTT~ARIfAKaLNC~~~~d~---~~pC~~C~~~----~~~s~DViEI   92 (718)
T PRK07133         20 IKGQDHIIETLKNIIKSGKISHAYLFSGPHGTGKTSVAKIFANALNCSHKTDL---IEPCQNCIEN----FNNNLDIIEM   92 (718)
T ss_pred             HCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC---CCCCCCHHHC----CCCCCCEEEE
T ss_conf             22859999999999974997505862389986889999999999679999999---9977021430----4789873775


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4   81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF  160 (369)
Q Consensus        81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~  160 (369)
                      ||||++|||+||++++.++++|++|+|||||||||||||.+|||||||||||||+||+|||+||+|++||+||+||||+|
T Consensus        93 DAASn~gVDdIReLie~v~y~P~~gkYKVyIIDEvHMLS~~AfNALLKtLEEPP~hvvFILaTTep~KIP~TIlSRCQrF  172 (718)
T PRK07133         93 DAASNNGVDEIRELRENVKNLPQISKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTDVQKIPLTILSRVQRF  172 (718)
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCHHHCCHHHHHCCEEE
T ss_conf             45566888999999998255887787249999662007999999999850279878279997088254848774122033


Q ss_pred             HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf             10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4  161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF  240 (369)
Q Consensus       161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll  240 (369)
                      +|++++.++|..+|+.|+.+|++++|++|+.+||+.|+||||||+++|||++++++++|+.++|.+++|+++.+...+++
T Consensus       173 dFkrI~~~~I~~~L~~I~~kE~I~~e~eAL~lIA~~a~GSmRDAlSlLDQv~~f~ng~it~k~v~~~~Gl~~~~~~i~~~  252 (718)
T PRK07133        173 NFRRISEDVIVHQLENILEKEKIKYEKNALKLIASLASGSLRDALSIADQVSIFGNGNITLKNVNELFGLVSNEIVINFL  252 (718)
T ss_pred             ECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf             58889999999999999998599778999999999768848889879999998548987299999996765579999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             76301363346788765430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4  241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM  320 (369)
Q Consensus       241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~  320 (369)
                      ..+..+|...++..++++...|.|+.+++.+|+..++|.++++-..+..-+..++.++...+     .++....+...+.
T Consensus       253 n~~~~~~~~~~l~~l~~~~~~gid~~~l~~~li~~~kd~ii~~~t~~~~ll~~~~~~~l~~l-----kId~~fay~~~e~  327 (718)
T PRK07133        253 NLLYSKNIKEVLEKLNQLKFQGIDPELLVISLINLVKDFIVFKKTKDNSLLEYYSEFDLENL-----KISIDFAYKFIEE  327 (718)
T ss_pred             HHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEECCCCHHHHHHCCHHHHHHH-----EECHHHHHHHHHH
T ss_conf             99986169999999999997588999999999999988832402574079875258878541-----2009999999999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             999999830278889999999999953304
Q 537021.9.peg.4  321 ILKGISEIEGFSRPMEAVEMVLIRLAHAVQ  350 (369)
Q Consensus       321 l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~  350 (369)
                      +-....+|+.+-.|...+|++++||++...
T Consensus       328 l~~~l~~l~~se~p~~~~Ei~iikl~~~~~  357 (718)
T PRK07133        328 LMSLLKDLKFSEFPFLTLEIFILKLLSLSN  357 (718)
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf             999999877403807889999999987516


No 21 
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00  E-value=0  Score=626.46  Aligned_cols=344  Identities=33%  Similarity=0.514  Sum_probs=312.6

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      ||||+++++.|++++.+||+||||||+||+|+||+|+||+||++|||.++...    +|||.|++|+.+..|+|||++|+
T Consensus        18 IIGQe~iv~~L~nAI~~~RiaHAYLFsGPrGvGKTTlArifAkaLnC~~~~~~----dpCg~C~sC~~I~~g~h~DviEI   93 (613)
T PRK05896         18 IIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDG----DCCNSCSVCESINTNQSVDIVEL   93 (613)
T ss_pred             HCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHCCCCCCEEEE
T ss_conf             23829999999999984997622775589984889999999999669999999----98888878999856999986884


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4   81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF  160 (369)
Q Consensus        81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~  160 (369)
                      |++|++|||+||++++.++++|+.|+|||||||+||+||.+|||||||||||||++|+|||+|++|++|||||+||||+|
T Consensus        94 daasn~gIDeIReLie~~~~~P~~gkyKV~IIDEah~Ln~~AaNALLKtLEEPP~~viFIL~Ttep~KLLpTIlSRCQrf  173 (613)
T PRK05896         94 DAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRY  173 (613)
T ss_pred             ECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCHHHHHCCCCE
T ss_conf             06555788999999997085875799459998162217999999999853489878379998288154937664035500


Q ss_pred             HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf             10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4  161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF  240 (369)
Q Consensus       161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll  240 (369)
                      +|++++.++|..+|+.|+++|++++|++|+.+||+.|+||||||+|+|||+++++++.|+.++|.+++|..+.+..++++
T Consensus       174 ~Fkri~~~~I~~~L~~I~~kE~i~ie~~AL~~Ia~~adGs~RDAlslLdQ~~~~~~~~it~~~v~~~~g~~~~~~~~~~~  253 (613)
T PRK05896        174 NFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNKKIDIEDINKTFGLVDNNKKINLI  253 (613)
T ss_pred             ECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf             17889989999999999997399878999999999768848789889999998356886299999996777689999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH-HHCC-HHHHHHHH
Q ss_conf             763013633467887654304762135787775348999999745741223449988999999998-6299-89999999
Q 537021.9.peg.4  241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYS-KEVS-ITFLSRFW  318 (369)
Q Consensus       241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a-~~i~-~~~L~~~l  318 (369)
                      +++.++|....+..++++...|.|+..++.+|+..++|++.++...+..-+...+.++...+.-.. +.+. ......++
T Consensus       254 ~~i~~~d~~~~~~~~~~~~~~g~~~~~~~~~li~~l~d~~~y~~~~~~~~l~~~~~e~~~~~~~~~~k~l~~~f~~n~~l  333 (613)
T PRK05896        254 ELIQKNDIEELRNLINELESKGINFEAFCRDLINLLIDLLVYQKTKNINLLKKLSKEQLKTLNLEKQKLLSIEFNTNFLL  333 (613)
T ss_pred             HHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99985589999999999998067899999999999999987332275788753789998887655656643201278999


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             999999998302788899999999999533
Q 537021.9.peg.4  319 QMILKGISEIEGFSRPMEAVEMVLIRLAHA  348 (369)
Q Consensus       319 q~l~~a~~~Lk~n~np~L~lE~lLlkL~~~  348 (369)
                      ..+......++.+.|+.-.+|+.+.++..-
T Consensus       334 ~~~~~~~~~~~~~~n~~~~~~i~~~~~in~  363 (613)
T PRK05896        334 NNFVSLFNNLKKSVNQVKEFEIYVYKIFNQ  363 (613)
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_conf             999999999998744026899999999850


No 22 
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=100.00  E-value=0  Score=555.27  Aligned_cols=334  Identities=22%  Similarity=0.357  Sum_probs=266.7

Q ss_pred             CCCHHHHHHHHHHHHHCCC------------CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             9284899999999998287------------6706201078798888999999999614687778866587899977999
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGR------------IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQA   68 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~------------~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~   68 (369)
                      ||||+++++.|+|+++++|            ++|||||+||+|+||+++|++||++|||+++..     .|||.|.+|++
T Consensus         7 ivGQe~v~~~L~~A~~~~R~~~~~~~~~~~~~~HAyLF~Gp~G~Gk~~~A~~~A~~l~C~~~~~-----~~cg~C~~C~~   81 (395)
T PRK07940          7 LVGQDAVVAELRAAARAARADSAHSAAAGSGMTHAWLFTGPPGSGRSNAARAFAAALQCTDPGV-----PGCGECRACRT   81 (395)
T ss_pred             HCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCC-----CCCCCCHHHHH
T ss_conf             1592999999999998363434433334687660376368998788999999999966999999-----99987878999


Q ss_pred             HHCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf             9779877822245332-233455566555445654204652377511566480016789999972122111466506754
Q 537021.9.peg.4   69 IIRGNHVDVVELDAAS-HTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIR  147 (369)
Q Consensus        69 i~~~~~~d~~e~~~~s-~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~  147 (369)
                      |.+|+||||+++.+.+ .++||+||+++++++++|++|+|||||||+||+||.+|+|||||||||||++|+|||+|++|+
T Consensus        82 i~~g~hpDv~~i~p~~~~i~id~iR~l~~~~~~~p~~~~~kv~ii~~a~~m~~~a~NalLKtLEEPp~~~~fiL~t~~~~  161 (395)
T PRK07940         82 VLAGTHPDVRVVVPEGLSIGVDEVREIVQIAARRPTTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSVE  161 (395)
T ss_pred             HHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHH
T ss_conf             87689987189826877688999999999985273037955999807787489999999985217888869998739978


Q ss_pred             CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCH-------------
Q ss_conf             3303567543332102454001356787643101345625664456531676420011000111000-------------
Q 537021.9.peg.4  148 KIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIAR-------------  214 (369)
Q Consensus       148 ~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~-------------  214 (369)
                      ++||||+||||+++|++++.++|.++|.+     ...++++....+|+.|+|++.+|+.+.......             
T Consensus       162 ~llpTI~SRcq~~~f~~~~~~~i~~~L~~-----~~gi~~~~A~~aA~~s~G~igrA~~la~d~~~~~~R~~~l~l~~~~  236 (395)
T PRK07940        162 DVLPTIRSRCRHVALRTPSVEAVADVLVR-----RDGVDPETAQWAARASGGHIGRARRLATDEEARARRARALRLPLRL  236 (395)
T ss_pred             HHHHHHHHHHEECCCCCCCHHHHHHHHHH-----CCCCCHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHC
T ss_conf             74468874400023799999999999987-----0199989999999980898899999806888999999999999970


Q ss_pred             ---------HHCC--CCHHHHHHCCCCCCHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHCC-----CC-HH
Q ss_conf             ---------0001--2103220001356777778888763013-----------6334678876543047-----62-13
Q 537021.9.peg.4  215 ---------CNDK--IVTSSVRLMLALADRNRIMDLFGYLIKG-----------DIINVLQEFSSQYDSG-----VN-PS  266 (369)
Q Consensus       215 ---------~~~~--i~~e~v~~llg~~~~~~i~~Ll~ai~~~-----------d~~~al~~l~~l~~~g-----~d-~~  266 (369)
                               ..+-  ...+.+....+..+.....++..++.-+           ....+++.+++..+..     .| ..
T Consensus       237 ~~~~~al~~a~~Ll~~~~~~~~~~~~~~d~~e~e~l~~~lg~~~~~~~~~~~~~~~~~~l~~le~~qK~r~~r~~~D~Ld  316 (395)
T PRK07940        237 ARVSDAVAAAEELVKAAEAEAKALTAERDEAETEELRTALGAGGTGKGTAKAPRGAAGALKDLEKRQKRRATRASRDALD  316 (395)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             37168999999999999999999888776899999999843443330133211778999999999876677777777899


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             57877753489999997457412234499889999999986299899999999999999983027888999999999995
Q 537021.9.peg.4  267 VILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLA  346 (369)
Q Consensus       267 ~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~  346 (369)
                      .+|.+|..||||+++++...   ....++++..+.+..++.+++.+++.++++.+.+++..|+.|+||+|+||+++++|.
T Consensus       317 ~~L~~L~~~~RD~L~~~~g~---~~~lin~d~~~~l~~~A~~~s~~~ll~~l~~i~~ar~~L~~Nvnp~L~LE~lll~L~  393 (395)
T PRK07940        317 RALIDLAGLYRDVLLVQLGA---GVGLVHPDMADRLAELAARSTPEGLLRCIDAVLACREALAVNVKPLLAVEAMVAALR  393 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             99999999999999986089---735558669999999997499999999999999999998845997999999999986


Q ss_pred             H
Q ss_conf             3
Q 537021.9.peg.4  347 H  347 (369)
Q Consensus       347 ~  347 (369)
                      .
T Consensus       394 q  394 (395)
T PRK07940        394 Q  394 (395)
T ss_pred             H
T ss_conf             4


No 23 
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=100.00  E-value=0  Score=542.28  Aligned_cols=316  Identities=23%  Similarity=0.321  Sum_probs=271.7

Q ss_pred             CCC-HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf             928-4899999999998287670620107879888899999999961468777886658789997799997798778222
Q 537021.9.peg.4    1 MIG-QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVE   79 (369)
Q Consensus         1 iiG-q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e   79 (369)
                      ||| |++|++.|++++.+||+||||||+||+|+||+++|++||++|+|+++..+    +|||.|.+|+++.+|+|||+++
T Consensus         7 ~~~~Q~~i~~~L~~~i~~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~LlC~~~~~~----~~Cg~C~~C~~~~~~~HPD~~~   82 (329)
T PRK08058          7 LTALQPIVVKMLQNSIAKNRLAHAYLFEGAKGTGKKATALWLAKSLFCLERNGV----EPCGTCTNCKRIESGNHPDVHL   82 (329)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHCCCCCCEEE
T ss_conf             883189999999999985996615655789998899999999999739999999----9887888999987699997677


Q ss_pred             CCCCCC-CCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf             453322-3345556655544565420465237751156648001678999997212211146650675433035675433
Q 537021.9.peg.4   80 LDAASH-TSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQ  158 (369)
Q Consensus        80 ~~~~s~-~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq  158 (369)
                      +.+.++ ++|||||++.++++++|++|+|||||||+||+||.+|||||||||||||++|+|||+|+++++|||||+||||
T Consensus        83 i~p~~~~i~idqiR~L~~~~~~~p~~g~~KV~II~~Ae~m~~~AaNALLKtLEEPp~~t~fIL~t~~~~~lLpTI~SRCq  162 (329)
T PRK08058         83 VAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGDTTAILLTENKHQILPTILSRCQ  162 (329)
T ss_pred             ECCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCE
T ss_conf             45661407799999999996438757886799973477629999999999864689786799872996664368863142


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHH
Q ss_conf             32102454001356787643101345625664456531676420011000111000000121032200013567777788
Q 537021.9.peg.4  159 RFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMD  238 (369)
Q Consensus       159 ~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~  238 (369)
                      +++|+|++.+++.++|.+    +|+  +++...+++..+ |++++|+.+.+.      +. ..+         .+..+.+
T Consensus       163 ~i~f~~~~~~~i~~~L~~----~~i--~~~~a~l~a~~~-gs~~~A~~l~~~------~~-~~~---------~~~~~~~  219 (329)
T PRK08058        163 VVEFRPLPPESLIQRLQE----EGI--SESLATLLAQLT-NSVEEALALSED------DW-FAQ---------ARALVIK  219 (329)
T ss_pred             EEECCCCCHHHHHHHHHH----CCC--CHHHHHHHHHHC-CCHHHHHHHHCC------HH-HHH---------HHHHHHH
T ss_conf             565889999999999998----799--989999999878-999999988426------15-899---------9999999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHH
Q ss_conf             88763013633467887654304---762135787775348999999745741223449988999999998629989999
Q 537021.9.peg.4  239 LFGYLIKGDIINVLQEFSSQYDS---GVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLS  315 (369)
Q Consensus       239 Ll~ai~~~d~~~al~~l~~l~~~---g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~  315 (369)
                      +++.+..++....+...+.+...   ..+...+|+.+..|+||++..+...+   ......+....+..++++++.+.+.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~rD~l~~~~~~~---~~~~~~d~~~~l~~~a~~~~~~~l~  296 (329)
T PRK08058        220 LYEALHKGDLLSFVFVQTKWMPLFKEKDQQQLGLDLLLLIYRDLLYVQLGEE---DRLVFREQKEELQQLALSYSQQQIV  296 (329)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHCHHHHHHHHHHHHCCCHHHHH
T ss_conf             9999976889999999999998701889999999999999999998741752---0011799999999998539999999


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             9999999999983027888999999999995
Q 537021.9.peg.4  316 RFWQMILKGISEIEGFSRPMEAVEMVLIRLA  346 (369)
Q Consensus       316 ~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~  346 (369)
                      ++++.+.++++.+++|+||+++||+++++|.
T Consensus       297 ~~~~~i~e~~~~l~~N~N~~L~lE~lll~L~  327 (329)
T PRK08058        297 AALELILEAKRRLNSNVNFQLVMEQLVLRLQ  327 (329)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             9999999999999855899999999999642


No 24 
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=100.00  E-value=0  Score=514.79  Aligned_cols=305  Identities=22%  Similarity=0.334  Sum_probs=272.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      ||||+++++.|++++.+||+||||||+||+|+||+++|++||++++|....                    ++|||++++
T Consensus         6 iiGq~~i~~~L~~~i~~~rl~HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~--------------------~~~~D~~~~   65 (313)
T PRK05564          6 IIGHENIKNRIDNSIIKGKFSHASLIVGEDGIGKSILAKEIANKILGKSEQ--------------------REYVDIIEY   65 (313)
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC--------------------CCCCCEEEE
T ss_conf             268299999999999879987504327999850999999999998289977--------------------889865886


Q ss_pred             CCCC--CCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf             5332--23345556655544565420465237751156648001678999997212211146650675433035675433
Q 537021.9.peg.4   81 DAAS--HTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQ  158 (369)
Q Consensus        81 ~~~s--~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq  158 (369)
                      ++.+  .+||||||+++++++++|++|+|||||||+||+||.+|||||||||||||++|+|||+|++|++|||||+||||
T Consensus        66 ~~~~~~~I~vd~IR~l~~~~~~~p~~g~~KV~II~~ae~m~~~AaNALLKtLEEPP~~t~fIL~t~~~~~lLpTI~SRCQ  145 (313)
T PRK05564         66 KPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYKSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQ  145 (313)
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHCCCCCCCCEEEEEEECCHHHCCCHHHCCCE
T ss_conf             33225699989999999998408625895699980777758999999845503689985899864983547577870653


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHH
Q ss_conf             32102454001356787643101345625664456531676420011000111000000121032200013567777788
Q 537021.9.peg.4  159 RFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMD  238 (369)
Q Consensus       159 ~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~  238 (369)
                      +++|+|++.+++.++|.+    +.-..+++....+++.|+|+++.|..+++.      +.     ...+     ++.+.+
T Consensus       146 ~~~f~~l~~~~i~~~L~~----~~~~~~~~~~~~~~~~s~G~~~~a~~~~~~------~~-----~~~~-----~~~~~~  205 (313)
T PRK05564        146 IYKLNRLSKEDIEKFISY----KYNDIDEENKNSAIAFSDGIPGKVEKFIED------DS-----LKDI-----RNMSLE  205 (313)
T ss_pred             EEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHHHH------HH-----HHHH-----HHHHHH
T ss_conf             566899899999999998----625899999999999829987999998405------79-----9999-----999999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             88763013633467887654304762135787775348999999745741223449988999999998629989999999
Q 537021.9.peg.4  239 LFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFW  318 (369)
Q Consensus       239 Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~l  318 (369)
                      +++.+..++...++.+.+.+.+.+.++..+++.+..|+||+++++..+.  ....++.+....+..+++.++...+.+++
T Consensus       206 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~rD~l~~k~~~~--~~~~~n~d~~~~l~~~a~~~~~~~l~~~~  283 (313)
T PRK05564        206 ILKDIDKSNINIIIKYENFLISYKENWEEILTCILSYIRDSLLFKETGN--NELIINVDKIEDIKEISEKYSYKKLNKMI  283 (313)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC--CCCEECHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             9999986799999999999998693499999999999999998515598--32016888999999998549999999999


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             99999999830278889999999999953
Q 537021.9.peg.4  319 QMILKGISEIEGFSRPMEAVEMVLIRLAH  347 (369)
Q Consensus       319 q~l~~a~~~Lk~n~np~L~lE~lLlkL~~  347 (369)
                      +.+.++++++++|+||+++||.++++|..
T Consensus       284 ~~l~~a~~~l~~n~N~~L~le~lllkl~e  312 (313)
T PRK05564        284 EIINDARNNLSSNTNSTLVFDSMLIKMQE  312 (313)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             99999999987459989999999998843


No 25 
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=100.00  E-value=0  Score=497.23  Aligned_cols=309  Identities=21%  Similarity=0.264  Sum_probs=258.5

Q ss_pred             HHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC---CCCCCH
Q ss_conf             99998287670620107879888899999999961468777886658789997799997798778222453---322334
Q 537021.9.peg.4   12 TNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDA---ASHTSI   88 (369)
Q Consensus        12 ~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~---~s~~~i   88 (369)
                      ++.+.+||+||||||+||+|+||+++|+.||++|+|+++...    +|||.|++|+++.+|+|||++++.+   .+.|||
T Consensus        13 ~~l~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~LlC~~~~~~----~~Cg~C~sC~~~~~~~HPD~~~i~pe~~~~~I~I   88 (328)
T PRK05707         13 QQLAGRGRHAHAYLLHGPAGIGKRALAERLAAFLLCEAPQGG----GACGSCKGCQLLAAGSHPDNFVLEPEEADKPIKV   88 (328)
T ss_pred             HHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCC----CCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCH
T ss_conf             999977982204644799986799999999999848999998----9998888999987589998799842666776979


Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCH
Q ss_conf             55566555445654204652377511566480016789999972122111466506754330356754333210245400
Q 537021.9.peg.4   89 DDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIG  168 (369)
Q Consensus        89 d~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~  168 (369)
                      ||||+++++++++|++|+|||||||+||+||.+|||||||||||||++|+|||+|++|++|||||+||||++.|++++.+
T Consensus        89 dqIR~l~~~~~~~~~~g~~KV~iI~~Ae~m~~~AaNALLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~p~~e  168 (328)
T PRK05707         89 DQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGQTVLLLISHQPSRLLPTIKSRCQQLACPLPSNE  168 (328)
T ss_pred             HHHHHHHHHHHHCCCCCCCEEEEEEHHHHHCHHHHHHHHHHHHCCCCCEEEEEEECCHHHCHHHHHHCCEEEECCCCCHH
T ss_conf             99999999983176678957999502877389999999998507898759998609934482588741413348998999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCH
Q ss_conf             13567876431013456256644565316764200110001110000001210322000135677777888876301363
Q 537021.9.peg.4  169 DLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLFGYLIKGDI  248 (369)
Q Consensus       169 ~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll~ai~~~d~  248 (369)
                      ++.+||.+-.    .+.+.+....+++.++|++.+|+.+.++-       ...          .+..+.+.+..+..+..
T Consensus       169 ~~~~~L~~~~----~~~~~~~a~~ll~la~G~p~~A~~l~~~~-------~~~----------~r~~~~~~l~~l~~~~~  227 (328)
T PRK05707        169 PSLQWLQQAL----PESDAEERIELLTLAAGSPLRALQLHAQG-------VRE----------QRARVVDGVKKLLKQQQ  227 (328)
T ss_pred             HHHHHHHHHC----CCCCHHHHHHHHHHCCCCHHHHHHHHCCC-------HHH----------HHHHHHHHHHHHHHCCC
T ss_conf             9999999755----65578999999997499999999874866-------899----------99999999999983878


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf             34678876543047621357877753489999997457412234499889999999986299899999999999999983
Q 537021.9.peg.4  249 INVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQMILKGISEI  328 (369)
Q Consensus       249 ~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~l~~a~~~L  328 (369)
                       ......+.+.+  .+...+++.+..|+||++.++..++.  ....+.+....+..+|++++.+.+..+++.+.++++.+
T Consensus       228 -~~~~~~~~~~k--~~~~~~l~~l~~~~~D~l~~~~~~~~--~~l~~~d~~~~i~~la~~~s~~~l~~~~~~l~~~r~~l  302 (328)
T PRK05707        228 -SASQLAESWLK--VPLPLLFDWFCDWAHLILRYQLTQDE--EGLGLADMRKVLQYLAQKSPQAKVLALQQWLLEQRQKV  302 (328)
T ss_pred             -CHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHCCCH--HHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf             -89999999750--57999999999999999999825971--41047889999999987299999999999999999998


Q ss_pred             --HCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             --0278889999999999953304
Q 537021.9.peg.4  329 --EGFSRPMEAVEMVLIRLAHAVQ  350 (369)
Q Consensus       329 --k~n~np~L~lE~lLlkL~~~~~  350 (369)
                        ..|+||+|++|.++++++.+..
T Consensus       303 ~~~~NvN~~L~lE~Lll~~~~L~~  326 (328)
T PRK05707        303 LGKANLNRVLLLEALLVQWAGLPG  326 (328)
T ss_pred             HHCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             636998889999999999857447


No 26 
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=100.00  E-value=0  Score=466.87  Aligned_cols=311  Identities=22%  Similarity=0.282  Sum_probs=260.2

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf             48999999999982876706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4    4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA   83 (369)
Q Consensus         4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~   83 (369)
                      |....+.|.+++..||+||||||+||+|+||.++|+.||+.|+|+++...    ++||+|.+|+.+.+|+|||++++.+.
T Consensus         7 l~~~~~~l~~~~~~~rl~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~----~~Cg~C~~C~l~~~~~HPD~~~i~pe   82 (334)
T PRK07993          7 LRPDYEKLVGSYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGH----KSCGHCRGCQLMQAGTHPDYYTLTPE   82 (334)
T ss_pred             CHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHCCCCCCEEEECCC
T ss_conf             78999999999985981046754799998899999999999818999999----99999978999866899984775342


Q ss_pred             ---CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             ---22334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4   84 ---SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF  160 (369)
Q Consensus        84 ---s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~  160 (369)
                         ..|||||||++.++++++|++|+|||+|||+||+||.+|||||||||||||++|+|||+|++|++|+|||+||||++
T Consensus        83 ~~~~~I~IdqIR~l~~~~~~~~~~g~~kV~iI~~Ae~mn~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRCq~~  162 (334)
T PRK07993         83 KGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPEKTWFFLACREPARLLATLRSRCRLH  162 (334)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCCHHHHHCCCC
T ss_conf             23455999999999999843665699479997667775999999999861279988499986698565723887523041


Q ss_pred             HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHH-H
Q ss_conf             102454001356787643101345625664456531676420011000111000000121032200013567777788-8
Q 537021.9.peg.4  161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMD-L  239 (369)
Q Consensus       161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~-L  239 (369)
                      .|++++.+++.+||.+     +...+++.+...++.++|++..|+.+++.     +..   +         .++.+.+ +
T Consensus       163 ~~~~~~~~~~~~wL~~-----~~~~~~~~~~~al~la~Gspl~A~~l~~~-----~~~---~---------~r~~l~~~l  220 (334)
T PRK07993        163 YLAPPPEQYALTWLSR-----EVTMSQEALLAALRLSAGAPGAALALLQP-----ERW---Q---------QREALCQAL  220 (334)
T ss_pred             CCCCCCHHHHHHHHHH-----HCCCCHHHHHHHHHHCCCCHHHHHHHHCC-----CHH---H---------HHHHHHHHH
T ss_conf             5899799999999987-----36898899999999849989999998256-----589---9---------999999999


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             87630136334678876543047621357877753489999997457412234499889999999986299899999999
Q 537021.9.peg.4  240 FGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQ  319 (369)
Q Consensus       240 l~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq  319 (369)
                      ...+..+|....+..+.   .  .+....++.+..+++|++..+....    ..++.+....+..++++++...+..+++
T Consensus       221 ~~~l~~~d~~~ll~~l~---~--~~~~~~L~wl~~ll~D~l~~~~~~~----~l~n~D~~~~i~~la~~~s~~~L~~~~~  291 (334)
T PRK07993        221 AYSLPSGDWYSLLPALN---H--EQAPARLHWLATLLMDALKRQHGAA----QVTNVDQPPLVAQLANHLSPARLQAILG  291 (334)
T ss_pred             HHHHCCCCHHHHHHHHH---H--HHHHHHHHHHHHHHHHHHHHHCCCC----CEECHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             99870367999999971---6--3489999999999999999860853----0148779999999985099999999999


Q ss_pred             HHHHHHHHHHC--CCCHHHHHHHHHHHHHHHC
Q ss_conf             99999998302--7888999999999995330
Q 537021.9.peg.4  320 MILKGISEIEG--FSRPMEAVEMVLIRLAHAV  349 (369)
Q Consensus       320 ~l~~a~~~Lk~--n~np~L~lE~lLlkL~~~~  349 (369)
                      .+.+++..+.+  |+|+++++|.+++++-+..
T Consensus       292 ~i~~~r~~L~~~~NlN~qLlLE~lll~~~~~l  323 (334)
T PRK07993        292 DVCHCREQLLSVTGVNRELLLTDLLLRIEHYL  323 (334)
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
T ss_conf             99999999752689999999999999999973


No 27 
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=100.00  E-value=0  Score=465.07  Aligned_cols=312  Identities=21%  Similarity=0.251  Sum_probs=262.3

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf             48999999999982876706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4    4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA   83 (369)
Q Consensus         4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~   83 (369)
                      |+...+.|.+++.+||+||||||+||+|+||+++|+.||+.|+|+++...    .|||.|.+|+.+..|+|||++++++.
T Consensus         6 l~~~~~~l~~~~~~~r~~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~----~~Cg~C~sC~l~~~g~HPD~~~i~~~   81 (324)
T PRK06871          6 LQPIYQQITQTFLQGRGHHALLFKADSGLGTEQLIRALAQWLMCQAPGDE----QPCGQCHSCHLFQAGNHPDFHILEPI   81 (324)
T ss_pred             CHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCC----CCCCCCHHHHHHHCCCCCCEEEEECC
T ss_conf             57999999999986995437876899997899999999999828999999----98888989999973899987998467


Q ss_pred             --CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             --223345556655544565420465237751156648001678999997212211146650675433035675433321
Q 537021.9.peg.4   84 --SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFD  161 (369)
Q Consensus        84 --s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~  161 (369)
                        ..||||+||+++++++.+|.+|++||+||++||+||.+|+|||||||||||++|+|||+|++|++|+|||+||||+++
T Consensus        82 ~~k~I~vd~IR~l~~~~~~~~~~g~~KV~iI~~ae~m~~~AaNALLKtLEEPp~~~~fiL~t~~~~~ll~TI~SRCq~~~  161 (324)
T PRK06871         82 DGKDIGVDQVREINEKVSQFAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSASLLATIYSRCQTWL  161 (324)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHCCCCEE
T ss_conf             88878899999999998646220596699975888857999999999833898783899987870103240862661200


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             02454001356787643101345625664456531676420011000111000000121032200013567777788887
Q 537021.9.peg.4  162 LHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLFG  241 (369)
Q Consensus       162 f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll~  241 (369)
                      |++++.+++.+||.+     ....+...+...++.++|++..|+.++++      +.+...          +..+..+..
T Consensus       162 ~~~p~~~~~~~wL~~-----~~~~~~~~~~~al~~~~g~pl~A~~~~~~------~~~~~r----------~~~~~~l~~  220 (324)
T PRK06871        162 IHVPEEQIALDWLQA-----QSSGEIQEIQTALRINYGRPLLALTFLEQ------GLLEQR----------KTFLRQFWL  220 (324)
T ss_pred             CCCCCHHHHHHHHHH-----HCCCCHHHHHHHHHHCCCCHHHHHHHHCC------CHHHHH----------HHHHHHHHH
T ss_conf             899499999999997-----46887299999999769987999998687------799999----------999999999


Q ss_pred             HHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             63013633467887654304762135787775348999999745741223449988999999998629989999999999
Q 537021.9.peg.4  242 YLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQMI  321 (369)
Q Consensus       242 ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~l  321 (369)
                      .+.++|....+..++     ..+....++.|..|++|++.++....   ...++.|....+..+|.+++.+.|...++.+
T Consensus       221 ~~~~~~~~~ll~~~~-----k~~~~~~L~wL~~~l~D~lk~k~g~~---~~~in~D~~~~i~~la~~~s~~~L~~~~~~l  292 (324)
T PRK06871        221 FYRRRSPLELLPLFD-----KEKVLQQLDWLLAFLSDALKAKLDID---SGWINQDLGRGILQFSQQQSAQGLLKAIQIM  292 (324)
T ss_pred             HHCCCCHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHCCCC---CCEECHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             971689999999975-----14588899999999999999844887---5607588999999999865999999999999


Q ss_pred             HHHHHHHHC--CCCHHHHHHHHHHHHHHH
Q ss_conf             999998302--788899999999999533
Q 537021.9.peg.4  322 LKGISEIEG--FSRPMEAVEMVLIRLAHA  348 (369)
Q Consensus       322 ~~a~~~Lk~--n~np~L~lE~lLlkL~~~  348 (369)
                      .+++.++..  |.|..|+++..|+|+...
T Consensus       293 ~~~r~~L~~~~~lN~eLll~~~L~~l~~~  321 (324)
T PRK06871        293 QKVRSDLLQINAVNQELILLDGLTRLVTE  321 (324)
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf             99999984457878999999999999998


No 28 
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=100.00  E-value=0  Score=465.32  Aligned_cols=326  Identities=21%  Similarity=0.275  Sum_probs=270.6

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC------CCHHHHHHHCCCC
Q ss_conf             9284899999999998287670620107879888899999999961468777886658789------9977999977987
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEG------FGEHCQAIIRGNH   74 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~------~c~~c~~i~~~~~   74 (369)
                      ||||+.+++.|.+++++||+||||||+||+|+||+|+|++||+.|+|+......++..+|.      .++.|++|..++|
T Consensus        19 liGqe~~~~~L~~a~~~grl~HA~Lf~Gp~GiGK~tlA~~~A~~ll~~~~~~~~~~~~~~~~l~~~~~~p~~r~i~~~~h   98 (363)
T PRK07471         19 LFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDAVFPPPASLAVDPDHPVARRIAAGAH   98 (363)
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCCC
T ss_conf             16819999999999985997645876799981889999999999857999777776787053125877728999952699


Q ss_pred             CCCCCCCCC---------CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf             782224533---------22334555665554456542046523775115664800167899999721221114665067
Q 537021.9.peg.4   75 VDVVELDAA---------SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTE  145 (369)
Q Consensus        75 ~d~~e~~~~---------s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~  145 (369)
                      ||+++++..         +.|+||+||+++++++++|.+|+|||+|||+||+||.+|||||||+|||||++|+|||+|++
T Consensus        99 pdl~~i~r~~d~k~~~~~~~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~mn~~aaNALLK~LEEPP~~t~fiLit~~  178 (363)
T PRK07471         99 GGLLTLERSWNEKGKRLRTVITVDEVRETIGFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLLLLVSHA  178 (363)
T ss_pred             CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf             98466762001133321244539999999999724852489669998687873889999999972158988389986399


Q ss_pred             CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHH
Q ss_conf             54330356754333210245400135678764310134562566445653167642001100011100000012103220
Q 537021.9.peg.4  146 IRKIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVR  225 (369)
Q Consensus       146 ~~~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~  225 (369)
                      |++|||||+||||+++|+|++++++.++|.+   .++..++++.+..+++.|+||+|+|+.+++.     ++ +..    
T Consensus       179 ~~~llpTI~SRCq~~~~~~l~~~~~~~~L~~---~~~~~~~~~~~~~la~~a~Gs~~~Al~l~~~-----~~-~~l----  245 (363)
T PRK07471        179 PARLLPTIRSRCRKLRLRPLAPEDVIAALAE---AGGPALDDAELAALAALAEGSVGRALRLAGG-----DG-LAL----  245 (363)
T ss_pred             HHHCHHHHHHHCCCCCCCCCCHHHHHHHHHH---HCCCCCCHHHHHHHHHHCCCCHHHHHHHHCC-----CH-HHH----
T ss_conf             7777799997352425899599999999998---4389999899999999758999999987479-----85-999----


Q ss_pred             HCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf             001356777778888763013633467887654304762-1357877753489999997457412234499889999999
Q 537021.9.peg.4  226 LMLALADRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVN-PSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQ  304 (369)
Q Consensus       226 ~llg~~~~~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d-~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~  304 (369)
                             ...+..++..+...|...+..+.+.+...+.+ ...+++.+..|++++........  ....+.++|...+.+
T Consensus       246 -------~~~~~~ll~~~~~~d~~~~~~lad~~a~~~~~~~~~~l~l~~~~l~~~~r~~~~~~--~~~~~~~~E~~~~~r  316 (363)
T PRK07471        246 -------YQRTTALLDTLPRLDRRALHALADAAAGGDRAAFALFLDLLDRWLARLARAGARNA--GLPEAVPGEAALLAR  316 (363)
T ss_pred             -------HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCHHHHHHHH
T ss_conf             -------99999999747678999999999998168779999999999999999998752278--810017317999986


Q ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHH
Q ss_conf             98629989999999999999998302-788899999999999533
Q 537021.9.peg.4  305 YSKEVSITFLSRFWQMILKGISEIEG-FSRPMEAVEMVLIRLAHA  348 (369)
Q Consensus       305 ~a~~i~~~~L~~~lq~l~~a~~~Lk~-n~np~L~lE~lLlkL~~~  348 (369)
                      ++...+...+...|+.+.+...+.+. |.||+.++=-++.+|...
T Consensus       317 l~~~~~~~~~~~~~~~l~~~~~~~~~~NLD~k~~~ld~~~~l~~~  361 (363)
T PRK07471        317 LAPDARLRRWAEVWEKIGRRARRTEAVNLDRKALVLDVFGLLAEA  361 (363)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             088630899999999999999999861898899999999999997


No 29 
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=100.00  E-value=0  Score=463.59  Aligned_cols=306  Identities=21%  Similarity=0.258  Sum_probs=251.2

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf             48999999999982876706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4    4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA   83 (369)
Q Consensus         4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~   83 (369)
                      |+..++.|..  ..+|+||||||+||.|+||.++|+.||++|+|+++..+.   +|||.|++|+++..|+|||++.+.+.
T Consensus         6 ~~~~w~~l~~--~~~rl~HA~Lf~Gp~G~Gk~~lA~~~A~~llC~~~~~~~---~~Cg~C~sC~~~~~~~HPD~~~i~Pe   80 (342)
T PRK06964          6 QTDDWNRLQA--LRARWPHALLLHGQAGIGKLAFAQHLAQGLLCETPQPNG---EPCGTCAACTWFAQGNHPDYRIVRPE   80 (342)
T ss_pred             CHHHHHHHHH--CCCCHHEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC---CCCCCCHHHHHHHCCCCCCEEEECCC
T ss_conf             5699999998--068713057657999867999999999998389999888---97867777888862799974553400


Q ss_pred             -----------------------------CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC
Q ss_conf             -----------------------------223345556655544565420465237751156648001678999997212
Q 537021.9.peg.4   84 -----------------------------SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP  134 (369)
Q Consensus        84 -----------------------------s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp  134 (369)
                                                   ..|+|||||++.++++++|++|+|||+||++||+||.+|||||||||||||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~idqiR~l~~~l~~~~~~g~~kVviI~~Ae~mn~~aaNalLK~LEEPp  160 (342)
T PRK06964         81 ALAAEAPGAADDAKAADADEGGKKTRAPSKEIKIEQVRALLDFCGVGSHRGGARVVVLYPAEALNVAAANALLKTLEEPP  160 (342)
T ss_pred             HHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCC
T ss_conf             21022333210010111222101235655645499999999997007545884499982778738999999999723798


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCH
Q ss_conf             21114665067543303567543332102454001356787643101345625664456531676420011000111000
Q 537021.9.peg.4  135 PHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIAR  214 (369)
Q Consensus       135 ~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~  214 (369)
                      ++|+|||+|+++++|||||+||||+++|++++.+++..+|..    +++.   ++.. +...++|++..|+.+.+.    
T Consensus       161 ~~~~~iL~~~~~~~llpTI~SRcq~~~~~~~~~~~~~~~L~~----~~v~---~a~~-lla~a~G~p~~Al~l~~~----  228 (342)
T PRK06964        161 PGVVFLLVSARIDRLLPTILSRCRQWPMTVPAPEAAAAWLAA----QGVA---DANA-LLAEAGGAPLAALALASD----  228 (342)
T ss_pred             CCEEEEEEECCHHHCCHHHHHCCEEECCCCCCHHHHHHHHHH----CCCC---CHHH-HHHHCCCCHHHHHHHHCC----
T ss_conf             784899986992548368876764302899599999999987----3986---3999-998809998999987167----


Q ss_pred             HHCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             00012103220001356777778888763013633467887654304762135787775348999999745741223449
Q 537021.9.peg.4  215 CNDKIVTSSVRLMLALADRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLY  294 (369)
Q Consensus       215 ~~~~i~~e~v~~llg~~~~~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~  294 (369)
                       +.               .+....+++.+..+.....+...+.+.+  .+...+++.+..|+||++.++..+.    ..+
T Consensus       229 -~~---------------~~~~~~~l~~L~~~~~~~~~~~ae~~~k--~~~~~~l~~l~~w~~DlL~~~~~~~----~~~  286 (342)
T PRK06964        229 -EN---------------RPLRDWTLGQLAAGAACDAFACGETLQK--LPVPAVLGWLQRWLYDLLAQRLAGA----PRY  286 (342)
T ss_pred             -CH---------------HHHHHHHHHHHHCCCCCCHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHCCC----CCC
T ss_conf             -35---------------9999999999864332579999999844--7899999999999999999982598----112


Q ss_pred             CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             988999999998629989999999999999998302788899999999999533
Q 537021.9.peg.4  295 SEAENARALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHA  348 (369)
Q Consensus       295 ~~~e~~~i~~~a~~i~~~~L~~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~~~  348 (369)
                      .+++...+.+++++++...+.++++.+.+++..+..|+|++|+||.++++.-.+
T Consensus       287 ~~~~~~~l~~lA~~~~~~~L~~~~~~l~~~r~~l~~nvN~~L~lE~LlL~~~e~  340 (342)
T PRK06964        287 FPAQRAALARCAAAADANAFARFAKAVTRQRAVENHPLAARLVFEELFLGYREL  340 (342)
T ss_pred             CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             677999999988508999999999999999998629987799999999999997


No 30 
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=100.00  E-value=0  Score=454.13  Aligned_cols=311  Identities=22%  Similarity=0.303  Sum_probs=238.5

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCHHHHHHHCCCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866--5878999779999779877822
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPT--VEFEGFGEHCQAIIRGNHVDVV   78 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~--~~~c~~c~~c~~i~~~~~~d~~   78 (369)
                      ||||+++++.|.+++++||+||||||+||+|+||+|+|+.||+.|+|.......|+  .+||+.|+.|+++..|+|||++
T Consensus        25 liGq~~~~~~L~~a~~~gRl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~~~r~i~~g~hpdl~  104 (352)
T PRK09112         25 LFGHEEARAFLAQAYREGRLHHALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASPLWRQIAQGAHPNLL  104 (352)
T ss_pred             HCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEE
T ss_conf             27869999999999984996524653589980899999999999866998666865567888787789999748999956


Q ss_pred             CCC---------CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf             245---------33223345556655544565420465237751156648001678999997212211146650675433
Q 537021.9.peg.4   79 ELD---------AASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKI  149 (369)
Q Consensus        79 e~~---------~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~l  149 (369)
                      +++         ..++|+||+||++.++++++|++|+|||+|||+||+||.+|||||||+|||||++|+|||+|++|++|
T Consensus       105 ~i~r~~d~k~~~~~~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m~~~aaNALLK~LEEPp~~~~fiLit~~~~~l  184 (352)
T PRK09112        105 HLTRPFDEKTGKFKTAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRL  184 (352)
T ss_pred             EEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHC
T ss_conf             55343220214543357779999999984548866880699981878746999999999853489874899886997777


Q ss_pred             CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCC
Q ss_conf             03567543332102454001356787643101345625664456531676420011000111000000121032200013
Q 537021.9.peg.4  150 PITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLA  229 (369)
Q Consensus       150 l~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg  229 (369)
                      ||||+||||+|+|+|+++++|.+.|.++..+|++. +++++..++..|+||+|+|++++++    ++-++ +..+..++ 
T Consensus       185 l~TI~SRCq~~~f~pL~~~di~~~L~~i~~~~~~~-~~~~~~~l~~~a~GS~~~Al~L~~~----~gl~i-~~~~~~ll-  257 (352)
T PRK09112        185 LPTIRSRCQPISLKPLDDDELKKALSHLGSKQGIS-AGEETEALLQRSEGSVRKALLLLNY----GGLEI-IDTVDQLL-  257 (352)
T ss_pred             HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCHHHHHHHHCC----CHHHH-HHHHHHHH-
T ss_conf             68999743321488939899999999875126899-8799999998708998899987448----77999-99999998-


Q ss_pred             CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             56777778888763013633467887654304762--1357877753489999997457412234499889999999986
Q 537021.9.peg.4  230 LADRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVN--PSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSK  307 (369)
Q Consensus       230 ~~~~~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d--~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~  307 (369)
                                 .. -.-|...+....+.+...+.+  +..+++.+..++.........  .++     .           
T Consensus       258 -----------~~-p~~d~~~~~~la~~~~~~~~~~~~~~~~~~l~~~l~~~ar~~a~--~~~-----~-----------  307 (352)
T PRK09112        258 -----------AG-SGFDLPKAHALAGALSGRESEVQFDLFRDHLLDRIANEARRAAE--SGQ-----L-----------  307 (352)
T ss_pred             -----------HC-CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH--CCC-----H-----------
T ss_conf             -----------08-99998999999999847774789999999999999999998501--588-----3-----------


Q ss_pred             HCCHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHC
Q ss_conf             2998999999999999999830-27888999999999995330
Q 537021.9.peg.4  308 EVSITFLSRFWQMILKGISEIE-GFSRPMEAVEMVLIRLAHAV  349 (369)
Q Consensus       308 ~i~~~~L~~~lq~l~~a~~~Lk-~n~np~L~lE~lLlkL~~~~  349 (369)
                       -....+.+.|+.+.+...+-+ .|-+|+.++--++.+|-...
T Consensus       308 -~~a~~~a~~~~~~~~~~~~~~a~NLD~~~~il~~~~~i~~a~  349 (352)
T PRK09112        308 -ALAERWARFWSELHEEIVEAETYNLDRKQTVISLLERIHRAF  349 (352)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             -789999999999999999889877787999999999999986


No 31 
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=100.00  E-value=0  Score=446.17  Aligned_cols=307  Identities=22%  Similarity=0.293  Sum_probs=251.4

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf             48999999999982876706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4    4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA   83 (369)
Q Consensus         4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~   83 (369)
                      |+..++.|..  ...|+||||||+||.|+||+++|+.||++|+|+++..+.   .|||.|.+|+++..|+|||++++.+.
T Consensus         6 ~~~~w~~l~~--~~~rl~HA~L~~Gp~G~Gk~~~A~~~A~~llC~~~~~~~---~~Cg~C~sC~~~~~g~HPD~~~i~p~   80 (325)
T PRK08699          6 HQEQWRQIAE--HWERRPNAWLFVGKKGTGKTAFARFAAKALLCETPAPGC---KPCGECMSCHLFGQGSHPDFYEITPL   80 (325)
T ss_pred             CHHHHHHHHH--HCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC---CCCCCCHHHHHHHCCCCCCEEEEECC
T ss_conf             5799999998--344501179757999978999999999998289998889---98988888999865999996885134


Q ss_pred             ------C----CCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHH
Q ss_conf             ------2----233455566555445654204652377511566480016789999972122111466506754330356
Q 537021.9.peg.4   84 ------S----HTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITV  153 (369)
Q Consensus        84 ------s----~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI  153 (369)
                            +    .|+||+||+++++++++|++|+|||+||++||+||.+|+|||||||||||++|+|||+|+++++|+|||
T Consensus        81 ~~~~~~g~~~~~I~idqiR~l~~~~~~~~~~~~~kV~ii~~ae~mn~~aaNaLLK~LEEPp~~~~fiL~t~~~~~llpTI  160 (325)
T PRK08699         81 ADEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNVQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTI  160 (325)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCCCHH
T ss_conf             45300166556676999999999971086568946999857777589999999998417888848999879846462339


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCH
Q ss_conf             75433321024540013567876431013456256644565316764200110001110000001210322000135677
Q 537021.9.peg.4  154 LSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADR  233 (369)
Q Consensus       154 ~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~  233 (369)
                      +||||+++|++++.+++..||..    .|+. +.++  .++ .++|++-     +    . ..+.+             .
T Consensus       161 ~SRc~~~~~~~p~~~~~~~~L~~----~gv~-~~~~--~La-~~~gapl-----~----~-~~~~~-------------~  209 (325)
T PRK08699        161 KSRCRKMVLPAPSHEEALAYLRE----RGVA-EPEE--RLA-FHSGAPL-----F----D-EEDEL-------------R  209 (325)
T ss_pred             HHCCCCCCCCCCCHHHHHHHHHH----CCCC-CHHH--HHH-HCCCCCH-----H----H-HCCHH-------------H
T ss_conf             86454210899599999999997----4897-6789--997-6599811-----2----3-17436-------------9


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHH
Q ss_conf             77788887630136334678876543047621357877753489999997457412234499889999999986299899
Q 537021.9.peg.4  234 NRIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITF  313 (369)
Q Consensus       234 ~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~  313 (369)
                      +...++++.+..+....++.....+.+.......+++.+..|++|++..+...    ...+.++..+.+..++.+++...
T Consensus       210 ~~r~~ll~~L~~~~~~~~l~~a~~~~k~~~~l~~~l~wlq~wl~DL~~~~~~~----~~~y~~d~~~~L~~lA~~~~~~~  285 (325)
T PRK08699        210 ALRAKLLDILAEPRLLKILDYAALFDKEKLPLAVFVGWMQKWLVDLGLCLQHM----KPVYYPAYEDRLLQTASGFRPRN  285 (325)
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHHHHHCCHHH
T ss_conf             99999999972644055999999987565848999999999999999998269----85438768999999987089999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999830278889999999999953304
Q 537021.9.peg.4  314 LSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQ  350 (369)
Q Consensus       314 L~~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~  350 (369)
                      +..+++.+.++.+.++.|.|++|++|.+++....+..
T Consensus       286 L~~~~~~l~~~~r~~~~nlN~~L~lE~LLl~y~~l~~  322 (325)
T PRK08699        286 VFAAEDMLKQLAPYGFHTLNVKMQIEHLLINYLELKK  322 (325)
T ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             9999999999998545998789999999999998875


No 32 
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=100.00  E-value=0  Score=442.32  Aligned_cols=315  Identities=17%  Similarity=0.285  Sum_probs=262.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHC--CCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866587899977999977--9877822
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIR--GNHVDVV   78 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~--~~~~d~~   78 (369)
                      ||||+++++.|++++++|++|| |||+||||+||||+|++||++|+|+....+......|..|..|+....  ..+.++.
T Consensus        17 vvGq~~i~~~L~~~~~~~~~ph-lLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~~~~~~i~~~~~~~~~~   95 (337)
T PRK12402         17 ILGQESVVDHLSALAASGNLPH-LVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFDQGKKYLVEDPRFAHFY   95 (337)
T ss_pred             HCCCHHHHHHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEEECCCCHHHHH
T ss_conf             0397999999999997799876-988892984899999999999679975678333116531135640010166423442


Q ss_pred             CCCCCC-CCCHHHHHHHHH-HHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf             245332-233455566555-445654204652377511566480016789999972122111466506754330356754
Q 537021.9.peg.4   79 ELDAAS-HTSIDDVREIID-QIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSR  156 (369)
Q Consensus        79 e~~~~s-~~~id~ir~l~~-~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SR  156 (369)
                      ...... ..++|.+|+++. .++++|..|+||||||||||+||.+|||||||+|||||++++|||+|+++++++|||+||
T Consensus        96 ~~~~~~~~~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~Aq~aLlk~lEe~~~~~~fIl~t~~~~~ii~tI~SR  175 (337)
T PRK12402         96 DDPKRKYKSVIDNFKHILKEYASMRPLSADYKLILFDNAEALREDAQQALRRIMERYSETCRFIFSTTQPSKLIPPIRSR  175 (337)
T ss_pred             CCHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHH
T ss_conf             01533277378999999999861488778804999707131799999999988740887669987238644475247762


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHH
Q ss_conf             33321024540013567876431013456256644565316764200110001110000001210322000135677777
Q 537021.9.peg.4  157 CQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRI  236 (369)
Q Consensus       157 cq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i  236 (369)
                      ||.|+|++++.++|..+|++|+++||+++++++++.||+.|+||||+|+++|+++....+..++.+.+..+.|....+.+
T Consensus       176 C~~i~F~~~s~~~i~~~L~~I~~~E~i~~~~~~l~~ia~~s~GdlR~ain~Lq~~~~~~~~~~~~~~~~~~~~~~~~~~i  255 (337)
T PRK12402        176 CLPLFFRPVPDDEIRSVLESIAAAEGVEISDDGLDLIAYYAEGDLRKAILTLQLAAEAEGEVTTEAALEELSDTGTDETV  255 (337)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHH
T ss_conf             44543589899999999999999849998999999999986998999999999998727997718899998778979999


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHH
Q ss_conf             88887630136334678876543-04762135787775348999999745741223449988999999998629989999
Q 537021.9.peg.4  237 MDLFGYLIKGDIINVLQEFSSQY-DSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLS  315 (369)
Q Consensus       237 ~~Ll~ai~~~d~~~al~~l~~l~-~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~  315 (369)
                      .++++++..+|..++...++++. +.|.++..++..|...+++                             ..+...+.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~il~~l~~~~~~-----------------------------~~~~~~~~  306 (337)
T PRK12402        256 EEALDAAEAGDFTDARSLLDDLLIDEGLSGREVLRELLEVARR-----------------------------GYSEYNVA  306 (337)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-----------------------------HCCHHHHH
T ss_conf             9999999848999999999998875599999999999999987-----------------------------47868999


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             999999999998302788899999999999
Q 537021.9.peg.4  316 RFWQMILKGISEIEGFSRPMEAVEMVLIRL  345 (369)
Q Consensus       316 ~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL  345 (369)
                      +++..+.+.+.++..++++.+.+|.++.+|
T Consensus       307 ~i~~~~a~~e~rl~~g~~~~lqL~a~la~i  336 (337)
T PRK12402        307 ELATLAADADARLTDAANERIQLNALLAEL  336 (337)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf             999999999988751799999999999847


No 33 
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=100.00  E-value=0  Score=429.03  Aligned_cols=284  Identities=21%  Similarity=0.297  Sum_probs=216.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      ||||+.+++.|++++++||+||||||+||+|+||+++|+.||+.|+|++         +|+.|..|+ +..++|||++++
T Consensus         6 iiGq~~~~~~L~~ai~~~rl~hAyLF~Gp~G~GK~~~A~~fa~~Ll~~~---------~~~~~~~~r-i~~~nHPDl~~i   75 (314)
T PRK07399          6 LIGQPLAIELLTAAIEQNRIAPAYLFAGPEGVGRKLAALRFIEGLLSQG---------SPSKNIRRR-LEEGNHPDLLWV   75 (314)
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC---------CCCCCHHHH-HHCCCCCCEEEE
T ss_conf             2594999999999998599674487789998329999999999985789---------999766558-751899977886


Q ss_pred             CCC-----------------------CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCC
Q ss_conf             533-----------------------223345556655544565420465237751156648001678999997212211
Q 537021.9.peg.4   81 DAA-----------------------SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHV  137 (369)
Q Consensus        81 ~~~-----------------------s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~  137 (369)
                      .+.                       ..++|||||++.++++++|++|+|||+|||+||+||.+|+||||||||||| ++
T Consensus        76 ~P~~~~~g~~~~~~~~~~~~~~~~~~~~I~idqIR~l~~~l~~~p~~~~~kVvII~~ae~m~~~AaNaLLKtLEEP~-~~  154 (314)
T PRK07399         76 EPTYQHQGKLITASEAEEAGLKRKSPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NG  154 (314)
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCCC-CC
T ss_conf             05620034545577898765302687778799999999997318856884799988978719999999998614787-85


Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHC
Q ss_conf             14665067543303567543332102454001356787643101345625664456531676420011000111000000
Q 537021.9.peg.4  138 KFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCND  217 (369)
Q Consensus       138 ~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~  217 (369)
                      +|||+|+++++|||||+||||+++|+|++.++|.++|+++...+...++.+   .+...|+||++.|+...++.-.    
T Consensus       155 ~fILit~~~~~lLpTI~SRCQ~i~F~~l~~~~i~~~L~~~~~~~~~~~~~~---~l~~~A~GspG~a~~~~~~~~~----  227 (314)
T PRK07399        155 TLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDNINEILDHP---ELLALAQGSPGAAIANIEQLQS----  227 (314)
T ss_pred             EEEEEECCHHHCCHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCHH---HHHHHHCCCHHHHHHHHHHHHH----
T ss_conf             699997993649146641875633899899999999997166433102789---9998817997999999999874----


Q ss_pred             CCCHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf             1210322000135677777888876301363346788765430476213578777-534899999974574122344998
Q 537021.9.peg.4  218 KIVTSSVRLMLALADRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDL-AEFTHLVTRIKYIPEMADTLLYSE  296 (369)
Q Consensus       218 ~i~~e~v~~llg~~~~~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~L-l~~~rdll~~k~~~~~~~~~~~~~  296 (369)
                       +.             +.+.+.++.. -.+..++++...++.+.       |+.. .-|+.|.+..              
T Consensus       228 -i~-------------~el~~~l~~~-~~~~~~~l~lak~i~~~-------Ld~~~qlwl~~~lq~--------------  271 (314)
T PRK07399        228 -IP-------------PELLQKLEQP-PKNPLEALELAKDISEE-------LDIEQQLWLIDYLQQ--------------  271 (314)
T ss_pred             -CC-------------HHHHHHHHCC-CCCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH--------------
T ss_conf             -86-------------9999998624-56899999998861266-------788999999999999--------------


Q ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             8999999998629989999999999999998302788899999999999533
Q 537021.9.peg.4  297 AENARALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHA  348 (369)
Q Consensus       297 ~e~~~i~~~a~~i~~~~L~~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~~~  348 (369)
                          .+....      ....+++.+.+++.+|+.++||||++|++|++|+..
T Consensus       272 ----~~w~~~------~~~~~~~~le~~r~~L~~~vqprL~~Ev~ll~l~~~  313 (314)
T PRK07399        272 ----HYWQKT------KNSQLLKKLEKLRKQLLSYVQPRLAWEVTLLELSQE  313 (314)
T ss_pred             ----HHHHHC------CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
T ss_conf             ----999860------037999999999999985288089999999999734


No 34 
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=100.00  E-value=0  Score=424.17  Aligned_cols=281  Identities=19%  Similarity=0.264  Sum_probs=217.7

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf             48999999999982876706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4    4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA   83 (369)
Q Consensus         4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~   83 (369)
                      |+.+++.|++++++||+||||||+|  |+||.++|++||++|+|+++...    .|||.|.+|+++..|+|||++++++.
T Consensus         7 Qp~i~~~l~~~i~~~rl~HAyLf~G--~~Gk~~~A~~~A~~l~C~~~~~~----~pCg~C~~C~~i~~~~hpDv~~i~~~   80 (290)
T PRK07276          7 QPKLFQRFQTILEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEDV----LPCGHCRSCRLIEQGDFSDVTVIEPQ   80 (290)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEECCC--CCCHHHHHHHHHHHHHCCCCCCC----CCCCCCHHHHHHHCCCCCCCEEECCC
T ss_conf             8999999999998499650542169--86879999999999818999998----98988999999876999871377167


Q ss_pred             CC-CCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf             22-33455566555445654204652377511566480016789999972122111466506754330356754333210
Q 537021.9.peg.4   84 SH-TSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDL  162 (369)
Q Consensus        84 s~-~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f  162 (369)
                      ++ ++||+||++.++++.+|++|+|||||||+||+||.+|||||||+|||||++|+|||+|++++++||||+||||+++|
T Consensus        81 ~~~I~vd~IR~l~~~~~~~~~~g~~KV~II~~Ad~mt~~AaNaLLK~LEEPp~~t~~iLlt~~~~~lLpTI~SRCQ~i~f  160 (290)
T PRK07276         81 GQVIKTDTIRELTANFSQSGYEGKRQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHF  160 (290)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHCCHHHHHHHHHHHCCCCCCCEEEEEECCHHHCCHHHHHCCCCCCC
T ss_conf             77576889999999984456137827999776565299999999997038988837998879925493788736601028


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             24540013567876431013456256644565316764200110001110000001210322000135677777888876
Q 537021.9.peg.4  163 HRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLFGY  242 (369)
Q Consensus       163 ~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll~a  242 (369)
                      + ...+.+...    +.++|+  .+.-..++|.+++ |+..|+.+.+       ++...+    +     ++.+..+++.
T Consensus       161 p-~~~~~l~~~----l~~~gi--~~~~a~~la~~~~-~~~~a~~l~~-------~~~f~~----~-----~~~~~~~~~~  216 (290)
T PRK07276        161 P-KNEAYLYQL----LEEKGL--LKTQAKLLAKLAQ-STSEAEKLAQ-------NSKFLE----L-----IDQAERFVSI  216 (290)
T ss_pred             C-CCHHHHHHH----HHHCCC--CHHHHHHHHHHHC-CHHHHHHHHH-------CHHHHH----H-----HHHHHHHHHH
T ss_conf             9-967999999----998699--8679999999965-9999999872-------548999----9-----9999999999


Q ss_pred             HHCCCHHHHHHHHH--HHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             30136334678876--5430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4  243 LIKGDIINVLQEFS--SQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM  320 (369)
Q Consensus       243 i~~~d~~~al~~l~--~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~  320 (369)
                      +..++....+...+  .+++...+-..+++.+.                             .-+++.++.......++.
T Consensus       217 l~~~~~~~~l~v~~~~~l~~~k~~q~~~l~ll~-----------------------------l~~~~~~~~~~~~~~L~~  267 (290)
T PRK07276        217 LLKDQDQAYLQVARLVQLADDKEEQDQVFTLLT-----------------------------LLLAKERAQVTPRTQLEA  267 (290)
T ss_pred             HHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHH
T ss_conf             980882779999999986322889999999999-----------------------------999987607899999999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             99999983027888999999999
Q 537021.9.peg.4  321 ILKGISEIEGFSRPMEAVEMVLI  343 (369)
Q Consensus       321 l~~a~~~Lk~n~np~L~lE~lLl  343 (369)
                      +.+++..++.|+|+++++|.++|
T Consensus       268 il~ak~~l~aNVnfq~~lE~L~L  290 (290)
T PRK07276        268 VYQARKMWQSNVSFQNALEYMVL  290 (290)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHCC
T ss_conf             99999999815799999999719


No 35 
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=100.00  E-value=0  Score=416.54  Aligned_cols=302  Identities=17%  Similarity=0.252  Sum_probs=241.7

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf             48999999999982876706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4    4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA   83 (369)
Q Consensus         4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~   83 (369)
                      ++.+.+.|.+++.+||+||||||+||+|+||+++|+.||+.|+|.+...     +|||.|.+|+.+..|+|||++++++.
T Consensus         8 l~~~~~~l~~~~~~~rl~HA~L~~g~~G~Gk~~la~~la~~LlC~~~~~-----~~Cg~C~sC~l~~~g~HPD~~~i~pe   82 (319)
T PRK06090          8 LVPVWQNWKSGLDAERIPGALLLQSDEGLGVESLVELFSHALLCQNYQS-----EACGFCHSCELMKSGNHPDLHVIKPE   82 (319)
T ss_pred             CHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCC-----CCCCCCHHHHHHHCCCCCCCEEEECC
T ss_conf             3799999999998699630676679998579999999999980899999-----98877877999875899982366123


Q ss_pred             ---CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             ---22334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4   84 ---SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF  160 (369)
Q Consensus        84 ---s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~  160 (369)
                         ..++||+||++.++++.+|..|+|||+||++||+||.+|+|||||||||||++|+|||+|+++++|+|||+||||++
T Consensus        83 ~~~k~I~vd~IR~l~~~~~~~~~~g~~KV~iI~~ae~m~~~AaNALLKtLEEPp~~t~fiL~t~~~~~ll~TI~SRCq~~  162 (319)
T PRK06090         83 KEGKSITVEQIRQCNRLAQESSQLGGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQW  162 (319)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCCCCHHHCCCCC
T ss_conf             35676879999999999754521069369998144434999999999984289988389987685120864187614450


Q ss_pred             HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf             10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4  161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF  240 (369)
Q Consensus       161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll  240 (369)
                      +|++++.+++.+||.+    +++...+    ...+.++|++-.|+.++++-      ..  +.         +..+.+-+
T Consensus       163 ~l~~p~~~~~~~WL~~----q~~~~~~----~aL~l~~g~Pl~a~~~l~~~------~~--~~---------~~~l~~~l  217 (319)
T PRK06090        163 VVTPPSTDQAMQWLKG----QGISVPA----YALKLNMGSPLKTLAMMKEG------EL--EE---------YHKLERQL  217 (319)
T ss_pred             CCCCCCHHHHHHHHHH----HCCCCHH----HHHHHCCCCCHHHHHHHCCC------HH--HH---------HHHHHHHH
T ss_conf             2899599999999988----4875579----99988499949999986386------89--99---------99999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             76301363346788765430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4  241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM  320 (369)
Q Consensus       241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~  320 (369)
                      ...+.++....+.....+ +  .++...+..+..++.|....+..-        ..+..........+++...|...++.
T Consensus       218 ~~~~~~~~~~~~~~~~~~-~--~~~~~~L~Wl~~lL~Da~K~~~gi--------~~~~~~~~~~~l~~l~~~~L~~~~~~  286 (319)
T PRK06090        218 VDALSGPVSDVLKCASLI-A--ADPLTALSWLWLLLTDAQKAHFGV--------QNEYILPGSAALGPFTYSGLYASTAK  286 (319)
T ss_pred             HHHHHCCCCHHHHHHHHH-C--CCHHHHHHHHHHHHHHHHHHHHCC--------CCCHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             999847884199998873-6--057778999999999999998605--------21066667999984189999999999


Q ss_pred             HHHHHHHHHC--CCCHHHHHHHHHHHHH
Q ss_conf             9999998302--7888999999999995
Q 537021.9.peg.4  321 ILKGISEIEG--FSRPMEAVEMVLIRLA  346 (369)
Q Consensus       321 l~~a~~~Lk~--n~np~L~lE~lLlkL~  346 (369)
                      +.+++.+|..  ++|..|.++..|++..
T Consensus       287 l~~~r~qL~~~~~lN~ELll~~~Ll~~~  314 (319)
T PRK06090        287 LLELKEQLQQFSGLNTELLIMNWLIESR  314 (319)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             9999999971887269999999999987


No 36 
>TIGR00678 holB DNA polymerase III, delta' subunit; InterPro: IPR004622   DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multi-chain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerisation to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This domain is the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tightly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classified as delta'. The noise cut-off is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication.
Probab=100.00  E-value=0  Score=437.68  Aligned_cols=188  Identities=31%  Similarity=0.509  Sum_probs=171.5

Q ss_pred             HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC--CCC-
Q ss_conf             99999998287670620107879888899999999961468777886658789997799997798778222453--322-
Q 537021.9.peg.4    9 KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDA--ASH-   85 (369)
Q Consensus         9 ~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~--~s~-   85 (369)
                      +.|.+++++||+||||||+||+|+||.++|+.||+.|+|+.....    +|||.|.+|++|.+|+||||++|.+  .+. 
T Consensus         2 ~~l~~~~~~~r~~HA~LF~G~~G~Gk~~~A~~~A~~l~C~~~~~~----~~Cg~C~~C~~~~~G~HPD~~~~~P~~~~~~   77 (216)
T TIGR00678         2 QQLQRALEKGRLAHAYLFTGPEGVGKELLALALAKALLCEPRGGG----EPCGECHSCRLIEAGNHPDLHRLEPEGQSKS   77 (216)
T ss_pred             HHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHHCCCCCEEEEEEECCCCC
T ss_conf             567889860678861254448887489999999999807785778----8888588899987079982378742347777


Q ss_pred             ---------------------CCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf             ---------------------33455566555445654204652377511566480016789999972122111466506
Q 537021.9.peg.4   86 ---------------------TSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATT  144 (369)
Q Consensus        86 ---------------------~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~  144 (369)
                                           |||||||++.++++++|++|+|||||||+||+||.+|||||||||||||++|+|||+|+
T Consensus        78 ~~~de~~~~~~g~a~~~~~~~Ik~dq~R~l~~~~~~~~~~~~~rVviI~~Ae~mn~~AANALLKtLEEPp~~t~fiL~~~  157 (216)
T TIGR00678        78 LTADEAAEGEEGSAKRRALPQIKVDQVRELVEFLSLTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITH  157 (216)
T ss_pred             CCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHEECCCCCEEEEEECC
T ss_conf             77645897625642113678787278999999986064214751799767323258989865101012798707988508


Q ss_pred             CC--CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHCCCCCCCHH
Q ss_conf             75--43303567543332102454001356787643101345625-66445653167642001
Q 537021.9.peg.4  145 EI--RKIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDP-EAVAMIARASDGSARDG  204 (369)
Q Consensus       145 ~~--~~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~-~~l~~ia~~s~GslR~A  204 (369)
                      ++  ++|||||+||||+++|.+++.+++.+||.+    .|+.-+. +....++++++|+++.|
T Consensus       158 ~~DP~~lLpTI~SRCq~~~f~~l~~~~~~~~L~~----~g~~~~~~~~a~~~~~~~~G~p~~a  216 (216)
T TIGR00678       158 SPDPERLLPTIRSRCQVLPFPPLSEEALLQWLIE----QGISENVPEAAELLLALAGGSPGRA  216 (216)
T ss_pred             CCCHHHHCCCCCCCEEEEEECCCCHHHHHHHHHH----CCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf             8884332211103201586259988999999997----0878780689999999846851239


No 37 
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=100.00  E-value=0  Score=420.31  Aligned_cols=298  Identities=19%  Similarity=0.261  Sum_probs=233.6

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf             48999999999982876706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4    4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA   83 (369)
Q Consensus         4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~   83 (369)
                      |+.+.+.|.+++++||+||||||+||+|+||+++|++||+.|+|+..       ++|+.|.+|+.+..|+|||++.++..
T Consensus         9 q~~~~~~L~~~i~~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~llc~~~-------~~~~~~~~~~~i~~g~HPD~~~i~~~   81 (319)
T PRK08769          9 QQRAFDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGP-------DPALAQRTRQLIAAGTHPDLQLVSFI   81 (319)
T ss_pred             CHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC-------CCCCCCHHHHHHHCCCCCCEEEEECC
T ss_conf             68999999999976994206875899987899999999999837997-------97654338899966899896877534


Q ss_pred             ---------CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH
Q ss_conf             ---------22334555665554456542046523775115664800167899999721221114665067543303567
Q 537021.9.peg.4   84 ---------SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVL  154 (369)
Q Consensus        84 ---------s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~  154 (369)
                               +.|+|||||+++++++++|++|+|||+|||+||+||.+|+|||||||||||++|+|||+|+++++|||||+
T Consensus        82 ~~~~~~k~k~~I~IdqiR~l~~~~~~~p~~g~~KV~IId~Ad~mn~~AaNalLK~LEEPp~~~~~iL~~~~~~~ll~TI~  161 (319)
T PRK08769         82 PNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRSACNALLKTLEEPSPGRYLWLISAQPARLPATIR  161 (319)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCCHHHH
T ss_conf             44454311234869999999999613720279569998066752899999999982279988489998699365824776


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHH
Q ss_conf             54333210245400135678764310134562566445653167642001100011100000012103220001356777
Q 537021.9.peg.4  155 SRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRN  234 (369)
Q Consensus       155 SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~  234 (369)
                      ||||+++|++++.+++..||..    +|  +++......+..|+|.++.|+.++.      ++.+.           -+.
T Consensus       162 SRCq~~~~~~p~~~~~~~~L~~----~g--~~~~~a~~~l~~a~g~p~~A~~~~~------~~~~~-----------~~~  218 (319)
T PRK08769        162 SRCQRLEFKLPPAHEALAWLLS----QG--VSERAAQEALDAARGHPGLAAQWLR------EDGLA-----------VRR  218 (319)
T ss_pred             HCCEEECCCCCCHHHHHHHHHH----CC--CCHHHHHHHHHHHCCCHHHHHHHHC------CCCHH-----------HHH
T ss_conf             4850111899699999999997----59--9918999999982799689999843------67277-----------899


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHH
Q ss_conf             77888876301363346788765430476213578777534899999974574122344998899999999862998999
Q 537021.9.peg.4  235 RIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFL  314 (369)
Q Consensus       235 ~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L  314 (369)
                      .+..-+..+.++. ..++.+++.+...+...     ..+.+..++...+.                 ...+....+...+
T Consensus       219 ~~~~~l~~i~~~~-~~~l~~aq~w~~d~~~~-----~~l~~~~~l~~~~~-----------------~~~~~~~~~l~~L  275 (319)
T PRK08769        219 AVAQDLEQIASGR-AGAVDVAQRWTNDGQAD-----QRLRHAADLALAQA-----------------SAGLTDPSRLHKL  275 (319)
T ss_pred             HHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH-----------------HHCCCCHHHHHHH
T ss_conf             9999999885074-25999999987602457-----88886440444211-----------------1116882889999


Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCH
Q ss_conf             9999999999998302788899999999999533049998
Q 537021.9.peg.4  315 SRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSP  354 (369)
Q Consensus       315 ~~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~~~s~  354 (369)
                      .++++.+.+++..++.|+|+++++|.+|+........|.+
T Consensus       276 ~~~l~~~~~~r~l~~~nvn~~L~le~Lli~~re~~~~~~~  315 (319)
T PRK08769        276 ATWFDAANRTRDLLRTTVRADLAVTELLLAWREGERQPRS  315 (319)
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             9999999999998538872889999999999974427777


No 38 
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=100.00  E-value=0  Score=410.76  Aligned_cols=296  Identities=23%  Similarity=0.346  Sum_probs=261.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      ++||+++++.|++++++|++|| |||+||||+||||+|++||+.++|++..                       -+++|+
T Consensus        18 i~g~~~~~~~L~~~i~~~~~ph-lLf~GppG~GKTt~a~~la~~l~~~~~~-----------------------~~~lel   73 (318)
T PRK00440         18 VVGQEEIVERLKSFVKEKNMPH-LLFAGPPGTGKTTAALALARELYGEYWR-----------------------ENFLEL   73 (318)
T ss_pred             HCCCHHHHHHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCCC-----------------------CCEEEE
T ss_conf             4196999999999998799866-9888959988999999999997698643-----------------------476895


Q ss_pred             CCCCCCCHHHHHHHHH-HHHHHHHC-CCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf             5332233455566555-44565420-465237751156648001678999997212211146650675433035675433
Q 537021.9.peg.4   81 DAASHTSIDDVREIID-QIYYKPIS-ARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQ  158 (369)
Q Consensus        81 ~~~s~~~id~ir~l~~-~~~~~p~~-~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq  158 (369)
                      ++++..++|.||+.+. .++.+|.. ++|||+||||||.||.+|||||+|+||+||.++.|||+|++++++++||+|||+
T Consensus        74 nasd~r~id~vr~~i~~~~~~~~~~~~~~kiiiiDE~d~l~~~aq~aL~~~mE~~~~~~~fil~~n~~~kii~~i~SRc~  153 (318)
T PRK00440         74 NASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQTTRFILSCNYSSKIIDPIQSRCA  153 (318)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHE
T ss_conf             16456671789999999997267789973899986855322556788876431056662588634883337615565510


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHH
Q ss_conf             32102454001356787643101345625664456531676420011000111000000121032200013567777788
Q 537021.9.peg.4  159 RFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMD  238 (369)
Q Consensus       159 ~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~  238 (369)
                      .++|+|+++++|..+|.+|+++||++++++++..|+..|+||+|+|+++| |..+..++.++.+.+.+++|.++.+.+.+
T Consensus       154 ~i~f~~~~~~~i~~~L~~I~~~E~i~~~~~~l~~i~~~s~gdlR~ain~L-q~~~~~~~~it~~~v~~~~~~~~~~~i~~  232 (318)
T PRK00440        154 VFRFSPLPKEAVIERLRYIAKNEGLEITDDALEAIYYVSEGDMRKAINAL-QAAAATGKEVTEEAVYKITGTARPEEIRE  232 (318)
T ss_pred             EEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHCCCCHHHHHH
T ss_conf             11157899999999999999985999899999999986499899999999-99997489878999999976999899999


Q ss_pred             HHHHHHCCCHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             88763013633467887654-30476213578777534899999974574122344998899999999862998999999
Q 537021.9.peg.4  239 LFGYLIKGDIINVLQEFSSQ-YDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRF  317 (369)
Q Consensus       239 Ll~ai~~~d~~~al~~l~~l-~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~  317 (369)
                      +++.+..++..++...++++ .+.|..+..++..+..   .+...                         .++.....++
T Consensus       233 ii~~~~~~~~~~~~~~l~~ll~~~g~~~~dIi~~l~~---~l~~~-------------------------~~~~~~k~~i  284 (318)
T PRK00440        233 MINLALNGDFTEAREKLRELMIDYGLSGEDIIKQIHR---EVLRL-------------------------DIPEDLKVEL  284 (318)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH---HHHHC-------------------------CCCHHHHHHH
T ss_conf             9999970899999999999998659999999999999---99845-------------------------9998999999


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
Q ss_conf             99999999983027888999999999995330
Q 537021.9.peg.4  318 WQMILKGISEIEGFSRPMEAVEMVLIRLAHAV  349 (369)
Q Consensus       318 lq~l~~a~~~Lk~n~np~L~lE~lLlkL~~~~  349 (369)
                      ++.+.+.+.++..++|+++.+|.++.+++.+.
T Consensus       285 i~~ia~~e~rl~~g~~~~lqLe~lla~l~~l~  316 (318)
T PRK00440        285 IDAIGEADFRITEGANERIQLEALLAKLALLG  316 (318)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             99999999998707999999999999999861


No 39 
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=100.00  E-value=0  Score=398.71  Aligned_cols=275  Identities=19%  Similarity=0.279  Sum_probs=216.3

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf             48999999999982876706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4    4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA   83 (369)
Q Consensus         4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~   83 (369)
                      +...++.|.+++++||+||||||+||+|+||+++|+.||+.|+|++.            +.+|..+..+.|||++++.+.
T Consensus         2 ~~~~We~L~~~i~~~Rl~HAyLf~Gp~G~GK~~~A~~~A~~LLc~~~------------p~~~~~i~~~~HPD~~~i~pe   69 (290)
T PRK05917          2 ENAAWEALLQRVRDQKVPSAILLHGQDLSNLSQYAYELASLILLESS------------PEAQYKISQKIHPDIHEFFPE   69 (290)
T ss_pred             CCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCC------------CCHHHHHHHCCCCCEEEECCC
T ss_conf             85499999999983996606876899986599999999999857899------------616889874689985996157


Q ss_pred             CC---CCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             22---334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4   84 SH---TSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF  160 (369)
Q Consensus        84 s~---~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~  160 (369)
                      ++   ++||++|++.++++++|++|+|||+|||+||+||.+|||||||+|||||++|+|||+|+++++|||||+||||++
T Consensus        70 ~k~~~~~Id~iR~l~~~i~~~p~~g~~KV~IId~Ad~Mn~~AaNALLKtLEEPP~~tvfILit~~~~~lLpTI~SRCQ~I  149 (290)
T PRK05917         70 GKGRLHSIETPRAIKKQIWIHPYEANYKIYIIHEADRMTLDAISAFLKVLEDPPKHSVIILTSAKPQRLPPTIRSRSLSI  149 (290)
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCCHHHHHCCCEE
T ss_conf             77887867899999999641864688269997567763899999999973479878599998699254823776335116


Q ss_pred             HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf             10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4  161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF  240 (369)
Q Consensus       161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll  240 (369)
                      +|++..               ...++++.+..++++++|.+.    +.|              +...             
T Consensus       150 ~i~~~e---------------~~~i~~e~~~~l~~~a~g~~~----~~~--------------~~~~-------------  183 (290)
T PRK05917        150 HIPGEE---------------KTLPSKEDIAYLIRYAQGKES----VTE--------------VGQI-------------  183 (290)
T ss_pred             ECCCCC---------------CCCCCHHHHHHHHHHHCCCHH----HHH--------------HHHH-------------
T ss_conf             777620---------------134788999999998469738----889--------------9988-------------


Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             76301363346788765430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4  241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM  320 (369)
Q Consensus       241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~  320 (369)
                         .++.....    .++..  .....+|+.++.||||.++++..+.. +.+.+ ++....+.    +...-.|...+.+
T Consensus       184 ---~k~~~d~~----~~~~r--~k~~~~l~~ll~~~Rd~~~~~~~~~~-s~l~~-~~~~~~i~----~~~~~~l~~v~~~  248 (290)
T PRK05917        184 ---VKGSADTD----KQVLR--DKTKRMLEVLLQLFRDRFTLALKVPA-SALAY-PDYLKEIL----TLPVLPLEKVLSI  248 (290)
T ss_pred             ---HCCHHHHH----HHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCH-HHHCC-CHHHHHHH----HCCCCCHHHHHHH
T ss_conf             ---30127766----78778--99999999999999999998616973-55228-06899998----6635679999999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             9999998302788899999999999533049
Q 537021.9.peg.4  321 ILKGISEIEGFSRPMEAVEMVLIRLAHAVQL  351 (369)
Q Consensus       321 l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~~  351 (369)
                      +.++.+.|.+|+|+..+||-+.+||.++.+.
T Consensus       249 i~~a~~~l~~~~~~~~~~~~~~l~~~~l~~~  279 (290)
T PRK05917        249 IERAVQALDNSSSATSCLEWVALQLVSLQNR  279 (290)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             9999998503676689999999999987637


No 40 
>KOG0989 consensus
Probab=100.00  E-value=0  Score=384.58  Aligned_cols=307  Identities=22%  Similarity=0.308  Sum_probs=244.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      ++||+++|+.|+|++.++-+|| |||+||||+|||++|++||++|||++       ..|||.|..|.....|...     
T Consensus        38 ~~gQe~vV~~L~~a~~~~~lp~-~LFyGPpGTGKTStalafar~L~~~~-------~~~~rvl~lnaSderGisv-----  104 (346)
T KOG0989          38 LAGQEHVVQVLKNALLRRILPH-YLFYGPPGTGKTSTALAFARALNCEQ-------LFPCRVLELNASDERGISV-----  104 (346)
T ss_pred             HCCHHHHHHHHHHHHHHCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCC-------CCCCCHHHHCCCCCCCCCC-----
T ss_conf             5015999999999986068860-78668999867689999999855742-------3555424313660014310-----


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4   81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF  160 (369)
Q Consensus        81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~  160 (369)
                      ........++.+.... -...+....|||+|+||||.||.+||+||+|+||.++.+|+|||+|+++++|+++|+||||.|
T Consensus       105 vr~Kik~fakl~~~~~-~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~Kf  183 (346)
T KOG0989         105 VREKIKNFAKLTVLLK-RSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKF  183 (346)
T ss_pred             HHHHHCCHHHHHHCCC-CCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCHHHHHHHHHH
T ss_conf             0665237998750255-656788986328997416453099999999998625466599997388564772877467771


Q ss_pred             HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCC-CCCCHHHHHHH
Q ss_conf             10245400135678764310134562566445653167642001100011100000012103220001-35677777888
Q 537021.9.peg.4  161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLML-ALADRNRIMDL  239 (369)
Q Consensus       161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~ll-g~~~~~~i~~L  239 (369)
                      +|+++.++++...|+.|+.+||+++|++++++|+..|+||+|||+..|+|+.. .+..|+...+.+.+ |.++.+.+.++
T Consensus       184 rFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~-~gk~It~~~~~e~~~GvVp~~~l~~l  262 (346)
T KOG0989         184 RFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSL-LGKRITTSLVNEELAGVVPDEKLLDL  262 (346)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHC-CCCCCCHHHHHHHHHCCCCHHHHHHH
T ss_conf             28876447899999999888589978789999999738728999999998610-47636458899998626878999999


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             87630136334678876543047621357877753489999997457412234499889999999986299899999999
Q 537021.9.peg.4  240 FGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQ  319 (369)
Q Consensus       240 l~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq  319 (369)
                      ++.++.+|..+..+.++.+.+.|+++.++++.|..++-+..       +........-.........+..+.+.+...+-
T Consensus       263 le~a~S~d~~~~v~~~Rei~~sg~~~~~lmsQLa~vi~~~~-------g~~d~~k~~~~~kl~~~~~~~~dg~~l~~~L~  335 (346)
T KOG0989         263 LELALSADTPNTVKRVREIMRSGYSPLQLMSQLAEVIMDII-------GLSDEQKAQISLKLFTRDKRLEDGEDLELALK  335 (346)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-------CCCHHHHHHHHHHHHHCCCHHHCCHHHHHHHH
T ss_conf             99997068388999999999824679999999999987055-------65617899999999702612200125899999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999830
Q 537021.9.peg.4  320 MILKGISEIE  329 (369)
Q Consensus       320 ~l~~a~~~Lk  329 (369)
                      .+..+..+++
T Consensus       336 ~L~~~~~ql~  345 (346)
T KOG0989         336 DLLEAEKQLR  345 (346)
T ss_pred             HHHHHHHHHH
T ss_conf             9999899974


No 41 
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=100.00  E-value=0  Score=374.31  Aligned_cols=297  Identities=15%  Similarity=0.187  Sum_probs=202.5

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf             48999999999982876706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4    4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA   83 (369)
Q Consensus         4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~   83 (369)
                      +++|++.|+|++++||+||||||+||+|+||+++|+.||+++||......    ..|..|      ..+.+.|+.+.   
T Consensus         3 ~e~iv~~L~nai~~~klsHAYLF~G~~G~Gk~~~a~~~a~~l~~~~~~~~----~~~~~~------~~~~~id~~~~---   69 (303)
T PRK07132          3 DNNIIKSLDNLAKQNKISHSFLLKSNYNNDLDESILYFLNKFNNLQSLNL----NLEELP------YNIFLFDIFDE---   69 (303)
T ss_pred             CHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC----CCCCCC------CCCEEECCCCC---
T ss_conf             03899999999984997616886789986799999999999729987888----754565------32304133222---


Q ss_pred             CCCCHHHHHHHHHHHHHHHH-CCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf             22334555665554456542-04652377511566480016789999972122111466506754330356754333210
Q 537021.9.peg.4   84 SHTSIDDVREIIDQIYYKPI-SARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDL  162 (369)
Q Consensus        84 s~~~id~ir~l~~~~~~~p~-~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f  162 (369)
                       .++++++|+.++++.++|. +|+|||||||+||+||.+|||||||||||||++|+|||+|++|+++||||+||||+|+|
T Consensus        70 -~i~~~~i~~~i~~~~~~~~~~~~~Kv~IIdea~~lt~~A~NaLLKtLEEPp~~~~fil~t~~~~~il~TI~SRCq~~~f  148 (303)
T PRK07132         70 -DLSKEEFLSAIEKFSFSSFVSNQKKILIIKNIEKTSNSSLNALLKTIEEPSKNTYFLLTTKNINKVIPTIVSRCQVINV  148 (303)
T ss_pred             -CHHHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHCCHHHHHHHHHHCCCCCCCEEEEEEECCHHHCCHHHHHCCEEEEC
T ss_conf             -0016889999999973665568706999816553399999999987038986848999728824383778636656637


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             24540013567876431013456256644565316764200110001110000001210322000135677777888876
Q 537021.9.peg.4  163 HRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLFGY  242 (369)
Q Consensus       163 ~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll~a  242 (369)
                      ++++.++|..+|.+    ++  ..++....+++.+. ++.+|....       ..+ ..+.+.+.         .+.+..
T Consensus       149 ~~~~~~~i~~~l~e----~~--~~~e~~~~~a~~~~-n~~~a~~~~-------~~e-~~~~~~~~---------~~~l~~  204 (303)
T PRK07132        149 KEPDQQKILAKLLS----QN--KEKEFEKFYAYIFK-NFEDAIKYI-------SKI-SENLVKKF---------IKALNK  204 (303)
T ss_pred             CCCCHHHHHHHHHH----CC--CCCHHHHHHHHHHC-CHHHHHHHH-------HHH-HHHHHHHH---------HHHHHH
T ss_conf             88999999999986----47--75278999999974-758899998-------642-39999999---------999998


Q ss_pred             HHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             30136334678876543047621357877753489999997457412234499889999999986299899999999999
Q 537021.9.peg.4  243 LIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQMIL  322 (369)
Q Consensus       243 i~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~l~  322 (369)
                      ....+ ......+++.... .+...+...+..|+++++..+....  .......+....++.     -...+..+++.+.
T Consensus       205 ~~~~~-~~~~~fl~~~~~~-~~~~~l~~ll~~~~~~i~~~~~~~~--~~~~k~~~~~~~~~~-----~~~~~~~ii~~id  275 (303)
T PRK07132        205 SLKEK-YSLLIFLNEKLNK-ENALFLVKLLLFYFKSIFLNKKKKK--IKNSKKTFLFEKYKE-----IKISFYKVMTSID  275 (303)
T ss_pred             HHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_conf             74114-7899999988778-4799999999999999988601001--688998999999988-----8878999999999


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             9999830278889999999999953
Q 537021.9.peg.4  323 KGISEIEGFSRPMEAVEMVLIRLAH  347 (369)
Q Consensus       323 ~a~~~Lk~n~np~L~lE~lLlkL~~  347 (369)
                      ++...|+.|+|..++.|++++++..
T Consensus       276 ~~~~~L~aNvNF~L~~E~mll~I~e  300 (303)
T PRK07132        276 EFLTKLEQNENFFIQKQAFLLKINI  300 (303)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             9999887034889999999999998


No 42 
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=100.00  E-value=0  Score=380.94  Aligned_cols=250  Identities=18%  Similarity=0.220  Sum_probs=220.6

Q ss_pred             CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC-CCCHHHHHHHHHHH
Q ss_conf             67062010787988889999999996146877788665878999779999779877822245332-23345556655544
Q 537021.9.peg.4   20 IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAAS-HTSIDDVREIIDQI   98 (369)
Q Consensus        20 ~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s-~~~id~ir~l~~~~   98 (369)
                      -|||+|+.|++|+|+..++..||++|.|+.+.      .|||+|++|+++.+|+|||++.+.+.. .+++|++|+++..+
T Consensus         7 ~~halLl~~~~G~~~~~~~~~~~k~LlC~~~~------~PCG~C~sC~~i~~g~HPD~~~i~pe~~sIkieqir~li~~l   80 (262)
T PRK05818          7 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKAN------GFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKL   80 (262)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC------CCCCCCHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             98505664487764699999999986228999------999888627867558999779971664557798999999998


Q ss_pred             HHHHHC-CCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             565420-4652377511566480016789999972122111466506754330356754333210245400135678764
Q 537021.9.peg.4   99 YYKPIS-ARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKI  177 (369)
Q Consensus        99 ~~~p~~-~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i  177 (369)
                      ++.|.+ |++||+||++||+||.+|||||||+|||||++|+|||+|++++++||||+|||+++.+.+.......+...+.
T Consensus        81 ~~~s~e~~g~KV~II~~Ae~Mt~~AANALLKtLEEPp~nt~fIL~t~~~~~LLPTIrSRC~~~~~~~~~~~~~~~~~~~~  160 (262)
T PRK05818         81 NRPSVESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKVESND  160 (262)
T ss_pred             HHCCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf             21140028848999877787499999999986128987838999738814373088877014466643466788887408


Q ss_pred             HHHCCCCCCHHHHH-HHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHH---CCCHHHHHH
Q ss_conf             31013456256644-56531676420011000111000000121032200013567777788887630---136334678
Q 537021.9.peg.4  178 LQEESIEFDPEAVA-MIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLFGYLI---KGDIINVLQ  253 (369)
Q Consensus       178 ~~~E~i~~d~~~l~-~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll~ai~---~~d~~~al~  253 (369)
                      ...|.+..+....+ .+...++||+||+++++||+++..++.++.+++..++|..+...+.++++.+.   +++.++++.
T Consensus       161 ~~~~~i~~~~~s~de~~~~~~~gs~~~~l~il~~~i~~~n~~~~~~~~~~l~~~i~~~~i~~ll~~~~~~~d~~~k~~~~  240 (262)
T PRK05818        161 RYFQYILLSFYSVDEQLQAYNNGSFSKLKNIIETLINKKNKLIQIHKAWILFKTFSYYEIAQLLNLLIPTVDPEKKSKLY  240 (262)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf             88987641011079999886167688899999999875688433999999983135999999998731266852268899


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             8765430476213578777534
Q 537021.9.peg.4  254 EFSSQYDSGVNPSVILHDLAEF  275 (369)
Q Consensus       254 ~l~~l~~~g~d~~~iL~~Ll~~  275 (369)
                      .+-+..+...+...++..+++|
T Consensus       241 ~~~~~~~~n~~~~~l~~~~is~  262 (262)
T PRK05818        241 NLLSNLKYNLPKTALFANIISW  262 (262)
T ss_pred             HHHHHHHCCCCHHHHHHHHHCC
T ss_conf             8998774497689999997359


No 43 
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=100.00  E-value=4.6e-42  Score=330.47  Aligned_cols=199  Identities=33%  Similarity=0.483  Sum_probs=175.8

Q ss_pred             CCCHHHHHHHHHHHHH-CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf             9284899999999998-287670620107879888899999999961468777886658789997799997798778222
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFK-SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVE   79 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~-~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e   79 (369)
                      ++|++.++..+...+. .+++||||||+||+|+||+++|.+||+.|+|+.+...    .+|+.|.+|+.+..|+|||++|
T Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~d~le   78 (325)
T COG0470           3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGL----LPCGHCRSCKLIPAGNHPDFLE   78 (325)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCC----CCCCHHHHHHHHCCCCCCCEEE
T ss_conf             433235899999999865888761003799999789999999999658664334----5520022444320256886599


Q ss_pred             CCCCCCC----CHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHH
Q ss_conf             4533223----345556655544565420465237751156648001678999997212211146650675433035675
Q 537021.9.peg.4   80 LDAASHT----SIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLS  155 (369)
Q Consensus        80 ~~~~s~~----~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~S  155 (369)
                      +++....    .+|+||++.++.+..|..|++||+||||||.||.+|+|||||++||||.+++|||+|++|++++|||+|
T Consensus        79 l~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~S  158 (325)
T COG0470          79 LNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRS  158 (325)
T ss_pred             ECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCHHHCHHHHHH
T ss_conf             77321333300699999999860446566772699973203269888876754332488871699974985556478775


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHH
Q ss_conf             433321024540013567876431013456256644565316764200110001110000
Q 537021.9.peg.4  156 RCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARC  215 (369)
Q Consensus       156 Rcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~  215 (369)
                      |||+++|+|++      .+..|+..|     ++++..++..+.|++|.|++.++ +.+..
T Consensus       159 Rc~~i~f~~~~------~~~~i~~~e-----~~~l~~i~~~~~gd~r~~i~~lq-~~~~~  206 (325)
T COG0470         159 RCQRIRFKPPS------RLEAIAWLE-----DQGLEEIAAVAEGDARKAINPLQ-ALAAL  206 (325)
T ss_pred             HEEEEECCCCC------HHHHHHHHH-----HHHHHHHHHHHCCHHHHHCCHHH-HHHHC
T ss_conf             60788767741------889999850-----75799999870406887348999-99861


No 44 
>PRK13342 recombination factor protein RarA; Reviewed
Probab=100.00  E-value=6.3e-40  Score=314.70  Aligned_cols=241  Identities=30%  Similarity=0.444  Sum_probs=207.6

Q ss_pred             CCCHHHHH---HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf             92848999---999999982876706201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4    1 MIGQKPMI---KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV   77 (369)
Q Consensus         1 iiGq~~~~---~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~   77 (369)
                      +|||++++   ..|+++++++++|| +||+|||||||||+|+++|+.++|                            ++
T Consensus        15 ~vGQ~hllg~~~~L~~~i~~~~~~s-~Il~GPPG~GKTTlA~iiA~~~~~----------------------------~f   65 (417)
T PRK13342         15 VVGQEHLLGPGKPLRRMIEAGRLSS-MILWGPPGTGKTTLARIIAGATDA----------------------------EF   65 (417)
T ss_pred             HCCCHHHHCCCHHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCC----------------------------CE
T ss_conf             5798776089719999997699975-998896999899999999998689----------------------------88


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECC-CC-CCCHHHHH
Q ss_conf             22453322334555665554456542046523775115664800167899999721221114665067-54-33035675
Q 537021.9.peg.4   78 VELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTE-IR-KIPITVLS  155 (369)
Q Consensus        78 ~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~-~~-~ll~TI~S  155 (369)
                      ++++|++ .||+++|++++.+.... .|+..|++|||+|+||+..|++||+.+|+  ..++||.+||+ |. .|.++|+|
T Consensus        66 ~~lnA~~-~gv~dir~ii~~a~~~~-~~~~tilfiDEIHRfnK~QQD~LLp~vE~--g~iiLIgATTENP~f~in~aLlS  141 (417)
T PRK13342         66 EALSAVT-SGVKDLREVIEEAKQSR-LGRRTILFIDEIHRFNKAQQDALLPHVED--GTITLIGATTENPSFEVNPALLS  141 (417)
T ss_pred             EEEECCC-CCHHHHHHHHHHHHHHH-CCCCEEEEEECHHHCCHHHHHHHHHHHHC--CCEEEEEECCCCCHHHCCHHHHH
T ss_conf             9961410-38899999999988631-48965999978200588999999875112--65699974157922534898985


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHH--CCCCHHHHHHCC
Q ss_conf             43332102454001356787643101-----34562566445653167642001100011100000--012103220001
Q 537021.9.peg.4  156 RCQRFDLHRISIGDLIELFTKILQEE-----SIEFDPEAVAMIARASDGSARDGLSLLDQAIARCN--DKIVTSSVRLML  228 (369)
Q Consensus       156 Rcq~~~f~~l~~~~i~~~L~~i~~~E-----~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~--~~i~~e~v~~ll  228 (369)
                      |||+|.|++++.++|...|.++++.|     ++.++++++..|+..|+|++|.|||+||.+.....  ..|+.+.+.+.+
T Consensus       142 Rc~vf~l~~L~~~di~~iL~ral~~e~~~~~~i~i~~~al~~i~~~s~GDaR~aLN~LE~a~~~~~~~~~i~~~~~~~~~  221 (417)
T PRK13342        142 RAQVFELKPLSEEDLEQLLKRALEDERGLGRKLELDDEALDALARLADGDARRALNLLELAAAAAAGGEVITLELLEEAL  221 (417)
T ss_pred             HHHHEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf             65700205899999999999999877433788776999999999814985999999999998525899734899999998


Q ss_pred             CCC----------CHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             356----------7777788887630136334678876543047621357877753
Q 537021.9.peg.4  229 ALA----------DRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAE  274 (369)
Q Consensus       229 g~~----------~~~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~  274 (369)
                      +..          ..+.+--+.+++...|+..++.|+..+.+.|.||..+...|+.
T Consensus       222 ~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpdAAlyyLarml~~GEDp~~IaRRLii  277 (417)
T PRK13342        222 QRRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVI  277 (417)
T ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             44103577786347899999999851699548999999999759997999999999


No 45 
>KOG0991 consensus
Probab=100.00  E-value=7.4e-40  Score=314.19  Aligned_cols=299  Identities=21%  Similarity=0.285  Sum_probs=253.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      |||++..++.|+-..+.|.+|| ++|+||||+||||.+.++|+.|+..+...                       -++|+
T Consensus        29 IVGNe~tv~rl~via~~gnmP~-liisGpPG~GKTTsi~~LAr~LLG~~~ke-----------------------~vLEL   84 (333)
T KOG0991          29 IVGNEDTVERLSVIAKEGNMPN-LIISGPPGTGKTTSILCLARELLGDSYKE-----------------------AVLEL   84 (333)
T ss_pred             HHCCHHHHHHHHHHHHCCCCCC-EEEECCCCCCHHHHHHHHHHHHHCHHHHH-----------------------HHHHC
T ss_conf             2177989999999997289986-67527999861648999999983806665-----------------------76320


Q ss_pred             CCCCCCCHHHHHHHHH-HHHHHHH--CCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf             5332233455566555-4456542--046523775115664800167899999721221114665067543303567543
Q 537021.9.peg.4   81 DAASHTSIDDVREIID-QIYYKPI--SARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRC  157 (369)
Q Consensus        81 ~~~s~~~id~ir~l~~-~~~~~p~--~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRc  157 (369)
                      +|....|||-+|+-++ +++.+-.  .|++||+|+||||.||..||.||.+|||=+...|.|.|+|+..+|++++|+|||
T Consensus        85 NASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KIiEPIQSRC  164 (333)
T KOG0991          85 NASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEKIIEPIQSRC  164 (333)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHH
T ss_conf             57655460899999999987203489985248996152202068999999999997063200000154213222677345


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHH
Q ss_conf             33210245400135678764310134562566445653167642001100011100000012103220001356777778
Q 537021.9.peg.4  158 QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIM  237 (369)
Q Consensus       158 q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~  237 (369)
                      -.++|.++++.++..+|.+|++.|++.|++++++.|...|+|+||.|+|.| |+...+.+-++.|+|.++.+.+....+.
T Consensus       165 AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnL-Qst~~g~g~Vn~enVfKv~d~PhP~~v~  243 (333)
T KOG0991         165 AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNL-QSTVNGFGLVNQENVFKVCDEPHPLLVK  243 (333)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH-HHHHCCCCCCCHHHHHHCCCCCCHHHHH
T ss_conf             765322267899999999999870788771147785544166199999999-9874054524632310006999859999


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             88876301363346788765430476213578777534899999974574122344998899999999862998999999
Q 537021.9.peg.4  238 DLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRF  317 (369)
Q Consensus       238 ~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~  317 (369)
                      +++.++.+++...+++.+.++++.|++|.+++..+   ||-.   |..       .+.+..+               ..+
T Consensus       244 ~ml~~~~~~~~~~A~~il~~lw~lgysp~Dii~~~---FRv~---K~~-------~~~E~~r---------------lE~  295 (333)
T KOG0991         244 KMLQACLKRNIDEALKILAELWKLGYSPEDIITTL---FRVV---KNM-------DVAESLR---------------LEF  295 (333)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHH---HHHH---HHC-------CHHHHHH---------------HHH
T ss_conf             99999986129999999999997489889999999---9999---842-------5788999---------------999


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             99999999983027888999999999995330499
Q 537021.9.peg.4  318 WQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQLP  352 (369)
Q Consensus       318 lq~l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~~~  352 (369)
                      +..+.-+.-.+-..+|..|.|--++.+||.....+
T Consensus       296 ikeig~thmrI~eGv~s~LQl~glla~l~~~~~k~  330 (333)
T KOG0991         296 IKEIGLTHMRILEGVNSLLQLSGLLAKLCKVGEKA  330 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99972678489863768999999999999840434


No 46 
>PRK04195 replication factor C large subunit; Provisional
Probab=100.00  E-value=3.6e-35  Score=279.58  Aligned_cols=235  Identities=21%  Similarity=0.377  Sum_probs=187.2

Q ss_pred             CCCHHHHHHHHHHHHH---CCCCCE-EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf             9284899999999998---287670-620107879888899999999961468777886658789997799997798778
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFK---SGRIAQ-SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVD   76 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~---~~~~~h-a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d   76 (369)
                      ||||+.+++.|.+.++   .|+.+| ++||+||||+||||+|+++|+.+++                            +
T Consensus        16 ivg~~~~v~~l~~Wl~~w~~g~~~~k~lLL~GPpGvGKTT~a~~lAk~~g~----------------------------~   67 (403)
T PRK04195         16 VVGNEKAKKQLREWIESWLKGKPPKKALLLYGPPGVGKTSLAHALANDYGW----------------------------E   67 (403)
T ss_pred             HHCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC----------------------------C
T ss_conf             858899999999999998739965746998893998799999999998499----------------------------8


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHH-HH-CCCCCEEEEECHHHCCC----CHHHHHHHHHHHCCCCCCEEEEECCC-CCC
Q ss_conf             2224533223345556655544565-42-04652377511566480----01678999997212211146650675-433
Q 537021.9.peg.4   77 VVELDAASHTSIDDVREIIDQIYYK-PI-SARFRVYIMDEVQMLST----AAFNGLLKTLEEPPPHVKFIFATTEI-RKI  149 (369)
Q Consensus        77 ~~e~~~~s~~~id~ir~l~~~~~~~-p~-~~~~kv~iid~a~~m~~----~a~NaLLK~lEEPp~~~~fil~t~~~-~~l  149 (369)
                      ++|++|+..++++.||+++..++.. +. ..++|++|+||+|.|+.    .+..+|++++|++  ...||++|+++ ++.
T Consensus        68 viElNASD~R~~~~I~~~i~~~~~~~sl~~~~~KlIIlDEvD~l~~~~d~gg~~al~~~ik~s--~~PiIli~Nd~~~~~  145 (403)
T PRK04195         68 VIELNASDQRTKDVIERVAGEASTSGSLFGAKRKLILLDEVDGIHGNADRGGVRAILEIIKKA--KNPIILTANDPYDPS  145 (403)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC--CCEEEEEECCCCCCC
T ss_conf             599771011478999999998760688778873499963434457244479999999998548--870899826845567


Q ss_pred             CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCC
Q ss_conf             03567543332102454001356787643101345625664456531676420011000111000000121032200013
Q 537021.9.peg.4  150 PITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLA  229 (369)
Q Consensus       150 l~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg  229 (369)
                      +.+|+|||+.++|++++..+|..+|++||.+||+++++++++.|+..|+||+|.|+|.| |+++.+++.++.+++.. -+
T Consensus       146 ~~~lrs~c~~i~F~~~~~~~I~~~L~~I~~~Egi~i~~~aL~~Ia~~s~GDlR~aIN~L-Q~~~~~~~~~~~~~~~~-~~  223 (403)
T PRK04195        146 LRPLRNACLMIEFKRLSKRSIVPVLKRICRKEGIECEEEALREIAERSGGDLRSAINDL-QAIAEGGGRITLDDVKT-GE  223 (403)
T ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHH-HHHHCCCCCCCHHHHHH-HC
T ss_conf             17799766122179949999999999999976999999999999998797399999999-99974899775666664-13


Q ss_pred             CCCHHHHHHHHHHHHCC-CHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf             56777778888763013-633467887654304762135787
Q 537021.9.peg.4  230 LADRNRIMDLFGYLIKG-DIINVLQEFSSQYDSGVNPSVILH  270 (369)
Q Consensus       230 ~~~~~~i~~Ll~ai~~~-d~~~al~~l~~l~~~g~d~~~iL~  270 (369)
                      .-....+|+.++.+++. +...+.....   ....+|..++.
T Consensus       224 rd~~~~if~~~~~if~~~~~~~a~~~~~---~~d~dpd~~~~  262 (403)
T PRK04195        224 RDREESIFEALDAVFKSRNYDQALEASY---DVDEDPDDLIQ  262 (403)
T ss_pred             CCCCCCHHHHHHHHHCCCCHHHHHHHHH---CCCCCHHHHHH
T ss_conf             5231438999999975698999999885---24799899999


No 47 
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=100.00  E-value=1.7e-32  Score=259.79  Aligned_cols=241  Identities=27%  Similarity=0.388  Sum_probs=196.8

Q ss_pred             CCCHHHHH---HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf             92848999---999999982876706201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4    1 MIGQKPMI---KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV   77 (369)
Q Consensus         1 iiGq~~~~---~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~   77 (369)
                      +|||+|++   ..|+++|++++++ +++|+|||||||||+|+++|+..++                            .|
T Consensus        30 ~vGQ~hllg~g~~Lrr~i~~~~~~-S~Il~GPPGtGKTTLA~iIA~~t~~----------------------------~F   80 (726)
T PRK13341         30 FVGQDHILGEGRLLRRAIKADRVG-SLILYGPPGVGKTTLARIIANHTRA----------------------------HF   80 (726)
T ss_pred             HCCCHHHCCCCCHHHHHHHCCCCC-EEEEECCCCCCHHHHHHHHHHHHCC----------------------------CE
T ss_conf             359575428982899999769998-2788897999999999999887488----------------------------67


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHH-HHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECC-CC-CCCHHHH
Q ss_conf             224533223345556655544565-42046523775115664800167899999721221114665067-54-3303567
Q 537021.9.peg.4   78 VELDAASHTSIDDVREIIDQIYYK-PISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTE-IR-KIPITVL  154 (369)
Q Consensus        78 ~e~~~~s~~~id~ir~l~~~~~~~-p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~-~~-~ll~TI~  154 (369)
                      ++++|. ..||.++|++++.+... ...|+.-|.+|||.|++|+.-|++||..+|.  ..+++|-+||+ |. .|.++++
T Consensus        81 ~~lsAv-~sgvkdlr~ii~~A~~~~~~~g~~tILFIDEIHRfNK~QQD~LLp~vE~--G~i~LIGATTENP~F~vn~ALl  157 (726)
T PRK13341         81 SSLNAV-LAGVKDLRAEVDAAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN--GTVTLIGATTENPYFEVNKALV  157 (726)
T ss_pred             EEEECC-CCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHCC--CEEEEEEECCCCCCEEECHHHH
T ss_conf             998562-0377999999999999987459965999862542588789987888606--8389997047897436429888


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHH--C----CCCH
Q ss_conf             543332102454001356787643101-------34562566445653167642001100011100000--0----1210
Q 537021.9.peg.4  155 SRCQRFDLHRISIGDLIELFTKILQEE-------SIEFDPEAVAMIARASDGSARDGLSLLDQAIARCN--D----KIVT  221 (369)
Q Consensus       155 SRcq~~~f~~l~~~~i~~~L~~i~~~E-------~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~--~----~i~~  221 (369)
                      |||++|.|++++.+++...|.+.+..+       ++.+++++++.|++.|+|+.|.|||.||.++....  +    .++.
T Consensus       158 SR~~vf~L~~L~~~dl~~il~rAl~d~~~g~~~~~i~i~~~al~~l~~~s~GDaR~aLN~LElav~~~~~~~~~~~~i~~  237 (726)
T PRK13341        158 SRSRLFRLKSLEDEDLHQLLKRALQDKERGYGDRNIDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDGVIHINL  237 (726)
T ss_pred             HHCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEECH
T ss_conf             32346674389999999999999876743256678775989999999975973999999999999707457688344359


Q ss_pred             HHHHHCC----------CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             3220001----------356777778888763013633467887654304762135787775
Q 537021.9.peg.4  222 SSVRLML----------ALADRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLA  273 (369)
Q Consensus       222 e~v~~ll----------g~~~~~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll  273 (369)
                      +.+.+.+          |....+.+--+++++...|+..++.++..+.+.|.||..+...|+
T Consensus       238 ~~~~~~~~~~~~~YDk~GD~HYd~iSAfiKSiRGSDpDAALywLARMLeaGEDP~fIaRRLi  299 (726)
T PRK13341        238 AIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRML  299 (726)
T ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             99999985666056877517889999999986548967899999999975998899999999


No 48 
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=100.00  E-value=1.2e-32  Score=261.06  Aligned_cols=243  Identities=28%  Similarity=0.418  Sum_probs=200.0

Q ss_pred             CCCHHHHH---HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf             92848999---999999982876706201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4    1 MIGQKPMI---KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV   77 (369)
Q Consensus         1 iiGq~~~~---~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~   77 (369)
                      +|||+|++   ..|+++++++++++ .+||||||+||||+|+++|++.+|.                            |
T Consensus        26 ~vGQ~HLlg~~~~lrr~v~~~~l~S-mIl~GPPG~GKTTlA~liA~~~~~~----------------------------f   76 (436)
T COG2256          26 VVGQEHLLGEGKPLRRAVEAGHLHS-MILWGPPGTGKTTLARLIAGTTNAA----------------------------F   76 (436)
T ss_pred             HCCHHHHHCCCCHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCC----------------------------E
T ss_conf             5571866189943899996499860-5777899988889999998761776----------------------------6


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECC-CC-CCCHHHHH
Q ss_conf             22453322334555665554456542046523775115664800167899999721221114665067-54-33035675
Q 537021.9.peg.4   78 VELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTE-IR-KIPITVLS  155 (369)
Q Consensus        78 ~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~-~~-~ll~TI~S  155 (369)
                      .+++|.+ .||.++|++++........|+.-|.+|||+|++|+.-|.+||-.+|.  ..++||-+||+ |+ .|-+.|+|
T Consensus        77 ~~~sAv~-~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~--G~iilIGATTENPsF~ln~ALlS  153 (436)
T COG2256          77 EALSAVT-SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVEN--GTIILIGATTENPSFELNPALLS  153 (436)
T ss_pred             EEECCCC-CCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHHHHHCC--CEEEEEECCCCCCCEEECHHHHH
T ss_conf             9951523-46799999999999987258834998722533374456551033248--86899962678987140388861


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHC--CCC-----CCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHC--CCCHHHHHH
Q ss_conf             43332102454001356787643101--345-----625664456531676420011000111000000--121032200
Q 537021.9.peg.4  156 RCQRFDLHRISIGDLIELFTKILQEE--SIE-----FDPEAVAMIARASDGSARDGLSLLDQAIARCND--KIVTSSVRL  226 (369)
Q Consensus       156 Rcq~~~f~~l~~~~i~~~L~~i~~~E--~i~-----~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~--~i~~e~v~~  226 (369)
                      |||+|.|+|++.++|...|.+.+..+  ++.     +++++++.+++.++|+.|.|||.||-++.....  .+..+.+.+
T Consensus       154 R~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~  233 (436)
T COG2256         154 RARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEE  233 (436)
T ss_pred             HHHEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf             10415651699899999999998654137776556688899999998628619999889999998627775247999999


Q ss_pred             CCCCC----------CHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             01356----------77777888876301363346788765430476213578777534
Q 537021.9.peg.4  227 MLALA----------DRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEF  275 (369)
Q Consensus       227 llg~~----------~~~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~  275 (369)
                      +++..          ..+.+--+.+++...|...++.++-.+++.|.||..+-..|+.+
T Consensus       234 ~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylaRmi~~GeDp~yiARRlv~~  292 (436)
T COG2256         234 ILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRI  292 (436)
T ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             98655205677763478999999986126883789999999996688789999999999


No 49 
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=100.00  E-value=6.8e-33  Score=262.80  Aligned_cols=182  Identities=24%  Similarity=0.300  Sum_probs=148.0

Q ss_pred             CCCHHHHHHHHHHHHH-----CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf             9284899999999998-----28767062010787988889999999996146877788665878999779999779877
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFK-----SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHV   75 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~-----~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~   75 (369)
                      +|||++++..|+++++     ++.++| .|||||||+||||+|+++|++++|.-.....|                    
T Consensus        26 ~vGQehl~~~l~~~i~a~~~~~~~l~h-~lf~GPPG~GKTTlAriiAk~~~~~~~~~s~~--------------------   84 (234)
T pfam05496        26 YIGQEKVKENLKIFIEAAKKRGEALDH-VLLYGPPGLGKTTLANIIANEMGVNIRITSGP--------------------   84 (234)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCEEEECCH--------------------
T ss_conf             069499999999999988742777662-78878999988899999998408753761426--------------------


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHH----------CCCC--------C
Q ss_conf             822245332233455566555445654204652377511566480016789999972----------1221--------1
Q 537021.9.peg.4   76 DVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEE----------PPPH--------V  137 (369)
Q Consensus        76 d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEE----------Pp~~--------~  137 (369)
                                 .++..+++..-+   ...+++.|++|||+|++|+..|++||+.+|+          |+.+        .
T Consensus        85 -----------~i~~~~di~~~l---~~~~~~~ILFIDEIHr~nK~qqd~Llp~vE~g~i~i~ig~~~~A~~~~~e~P~F  150 (234)
T pfam05496        85 -----------ALEKPGDLAAIL---TNLEPGDVLFIDEIHRLNRAVEEILYPAMEDFRLDIVIGKGPSARSIRLDLPPF  150 (234)
T ss_pred             -----------HHHHHHHHHHHH---HHCCCCCEEEEECHHHCCHHHHHHCCCCCCCCEEEEEECCCCCCEEEECCCCCE
T ss_conf             -----------664389999999---845899889996654358768874455334616999963676632465268975


Q ss_pred             CEEEEECCCCCCCHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHH
Q ss_conf             1466506754330356754333-210245400135678764310134562566445653167642001100011100000
Q 537021.9.peg.4  138 KFIFATTEIRKIPITVLSRCQR-FDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCN  216 (369)
Q Consensus       138 ~fil~t~~~~~ll~TI~SRcq~-~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~  216 (369)
                      .||.+||++.++++|++|||.+ ++|.+++.+++.+.|++.+..++++++++++..||+.|+|++|+|+++|||+..++.
T Consensus       151 tLIgATTe~~~l~~pl~sR~~i~~~l~~l~~edl~~il~r~~~~l~i~i~~eal~~IA~~s~Gd~R~ALnlLe~v~d~a~  230 (234)
T pfam05496       151 TLVGATTRAGLLTSPLRDRFGIVLRLEFYSVEELEEIVKRSARILGVEIDEEGAAEIARRSRGTPRIANRLLRRVRDFAQ  230 (234)
T ss_pred             EEEEECCCCCCCCHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             99852156664777799762112442468999999999999998399959999999999779989999899999999998


Q ss_pred             C
Q ss_conf             0
Q 537021.9.peg.4  217 D  217 (369)
Q Consensus       217 ~  217 (369)
                      -
T Consensus       231 ~  231 (234)
T pfam05496       231 V  231 (234)
T ss_pred             H
T ss_conf             7


No 50 
>KOG0990 consensus
Probab=99.97  E-value=1.4e-31  Score=253.02  Aligned_cols=255  Identities=23%  Similarity=0.288  Sum_probs=210.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      +|||+.++..+.+....+++|| .||+||||+||++...+.|+-|-|..+..+                      -+.|+
T Consensus        43 v~~~~ei~st~~~~~~~~~lPh-~L~YgPPGtGktsti~a~a~~ly~~~~~~~----------------------m~lel   99 (360)
T KOG0990          43 VIKQEPIWSTENRYSGMPGLPH-LLFYGPPGTGKTSTILANARDFYSPHPTTS----------------------MLLEL   99 (360)
T ss_pred             HHCCCCHHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHCCCCCCHH----------------------HHHHH
T ss_conf             7337721247888626888975-343489988998736665665058998246----------------------99986


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHH----HC--CCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH
Q ss_conf             5332233455566555445654----20--46523775115664800167899999721221114665067543303567
Q 537021.9.peg.4   81 DAASHTSIDDVREIIDQIYYKP----IS--ARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVL  154 (369)
Q Consensus        81 ~~~s~~~id~ir~l~~~~~~~p----~~--~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~  154 (369)
                      ++....|+|-+|+-+.......    +.  ..+|.+|+||||+||.+|||||.+.+|.+..++.|+++++.|.++.|.++
T Consensus       100 naSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ii~n~~~ki~pa~q  179 (360)
T KOG0990         100 NASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTANTRFATISNPPQKIHPAQQ  179 (360)
T ss_pred             HCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHCCCHHH
T ss_conf             43676688614788898776416400024676158873341376698999999999871332379986167644681464


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHH-----HHHHCCC
Q ss_conf             54333210245400135678764310134562566445653167642001100011100000012103-----2200013
Q 537021.9.peg.4  155 SRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTS-----SVRLMLA  229 (369)
Q Consensus       155 SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e-----~v~~llg  229 (369)
                      |||++|+|.+++..++...+.+|++.|...+++++...+++.+.|+||.|++.|+ ..+...+.+...     .++...|
T Consensus       180 sRctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lq-s~~~~~~~~~e~~~~~~~vy~c~g  258 (360)
T KOG0990         180 SRCTRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQ-SILKKVMERKELNNPNDLVYQCKG  258 (360)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCHHHHHHHCC
T ss_conf             1044578788875442467888871531103878899999986777999999999-999985777877772156787149


Q ss_pred             CCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHH
Q ss_conf             567777788887630136334678876543-04762135787775348999
Q 537021.9.peg.4  230 LADRNRIMDLFGYLIKGDIINVLQEFSSQY-DSGVNPSVILHDLAEFTHLV  279 (369)
Q Consensus       230 ~~~~~~i~~Ll~ai~~~d~~~al~~l~~l~-~~g~d~~~iL~~Ll~~~rdl  279 (369)
                      .+...++.++++.+++++...+......+. ..|.+....+..+..+++.+
T Consensus       259 ~p~~~dI~~I~~~il~~~~~~~~~~is~lk~~~gla~~d~i~~l~~~~~~~  309 (360)
T KOG0990         259 APQPSDIRQIIEKRMNGEDIELMLDDSELKKPKGLARQDRRAELEQRFAIV  309 (360)
T ss_pred             CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             997667999999972282498875256540333168999999999988988


No 51 
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=99.96  E-value=1.1e-29  Score=239.19  Aligned_cols=142  Identities=20%  Similarity=0.307  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHH---HHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC---
Q ss_conf             9999999998287670620107879888899999999---9614687778866587899977999977987782224---
Q 537021.9.peg.4    7 MIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIAR---SLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL---   80 (369)
Q Consensus         7 ~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~---~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~---   80 (369)
                      +++.|.+.+.+++++|||||.|.   +.+.....+++   .++|.+...                  -.++||+.-+   
T Consensus         1 ~ie~L~n~lknnKlsns~l~~~~---N~~~~l~~~~~fi~~~~~~~~~~------------------le~~pd~~~i~~~   59 (263)
T PRK06581          1 IIERLEFNLKHNKLYNSWLIEAE---NIEQALKDLEKFIYIKLFKNSIP------------------LENNPDYHFIARE   59 (263)
T ss_pred             CHHHHHHHHHCCHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHCCCCC------------------CCCCCCHHHHHHH
T ss_conf             95789888741324466643078---86799999999999998626865------------------2358328887420


Q ss_pred             -CC---CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf             -53---32233455566555445654204652377511566480016789999972122111466506754330356754
Q 537021.9.peg.4   81 -DA---ASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSR  156 (369)
Q Consensus        81 -~~---~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SR  156 (369)
                       ++   +.+++|||||++.++++.+|.+|+|||+|||+||.||.+|||||||+|||||.+++|||+|++++.|||||+||
T Consensus        60 ~~~~sn~KnI~IdQIR~L~~fl~~ts~~s~~KV~IId~Ae~mn~~AaNALLK~LEEPP~nt~iiLiT~~~~~LLpTIrSR  139 (263)
T PRK06581         60 TSATSNAKNISIEQIRKLQDFLNKTSAISGYKVAIIYSADLMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSR  139 (263)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHCHHHHHHHHHHHCCCCCCCEEEEEECCHHHCCCHHHHC
T ss_conf             34566567357999999999963475468945999947677498989989987418987828999869824461465434


Q ss_pred             HHHHHCCCCCCHH
Q ss_conf             3332102454001
Q 537021.9.peg.4  157 CQRFDLHRISIGD  169 (369)
Q Consensus       157 cq~~~f~~l~~~~  169 (369)
                      ||.++|+....++
T Consensus       140 Cq~inf~s~~~~~  152 (263)
T PRK06581        140 CFKINCRSSALHA  152 (263)
T ss_pred             CEEEECCCCHHHH
T ss_conf             5787358810444


No 52 
>PRK04132 replication factor C small subunit; Provisional
Probab=99.96  E-value=1.5e-27  Score=223.44  Aligned_cols=210  Identities=15%  Similarity=0.147  Sum_probs=186.3

Q ss_pred             EECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             51156648001678999997212211146650675433035675433321024540013567876431013456256644
Q 537021.9.peg.4  112 MDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVA  191 (369)
Q Consensus       112 id~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~  191 (369)
                      ||+|+.+|.+++.|+..++|-...+|.||+.|++.+||+|+|+|||-+|+|+|++++++..+|.+|++.||+++++++++
T Consensus       651 i~~a~~~t~d~~~~~~r~~~~~~~~~~~~~SCNYsSKIIePIQSRCavFRF~PL~~e~v~~RL~~Ia~~Egv~itedGle  730 (863)
T PRK04132        651 IKKEYIGYKDVYDITCHNDHSFIANGFVSHNCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQ  730 (863)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf             57888665779999987787642056179866760407416655624788368999999999999999749976778999


Q ss_pred             HHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH-HHHCCCCHHHHHH
Q ss_conf             565316764200110001110000001210322000135677777888876301363346788765-4304762135787
Q 537021.9.peg.4  192 MIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLFGYLIKGDIINVLQEFSS-QYDSGVNPSVILH  270 (369)
Q Consensus       192 ~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll~ai~~~d~~~al~~l~~-l~~~g~d~~~iL~  270 (369)
                      .|...|+|+||+|+|.| |+.+...+.++.+.|+.+.|.+....+.+++++++++|...+.+.+.+ +++.|+...+++.
T Consensus       731 AI~~~aeGDMRkAIN~L-Qsaa~~~~~Vt~d~Vy~v~~~p~P~~I~~~l~~al~g~f~~A~~~L~~ll~~~GlS~~DII~  809 (863)
T PRK04132        731 AILYVAEGDMRRAINVL-QAAAALDTKITDENVFKVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLV  809 (863)
T ss_pred             HHHHHCCCCHHHHHHHH-HHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             99997567489999999-99986169878889999708999899999999997299899999999999966969899999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             77534899999974574122344998899999999862998999999999999999830278889999999999953304
Q 537021.9.peg.4  271 DLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQ  350 (369)
Q Consensus       271 ~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~  350 (369)
                      .+......             +.               ++...-..+++.+.+++.+|-..+|.++.++.++.+++.+..
T Consensus       810 ~i~r~v~~-------------l~---------------ipe~~kv~li~~ige~e~Rl~eGa~e~IQL~ALlA~f~l~g~  861 (863)
T PRK04132        810 QMHREVFN-------------LP---------------IDEPKKVYLADKIGEYNFRLVEGANEMIQLEALLAQFTLMGK  861 (863)
T ss_pred             HHHHHHHH-------------CC---------------CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
T ss_conf             99999961-------------79---------------987899999999976670331488869999999999997357


No 53 
>KOG2035 consensus
Probab=99.94  E-value=1.9e-25  Score=207.79  Aligned_cols=311  Identities=17%  Similarity=0.216  Sum_probs=203.1

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCC---CCCC-CCCCCCCHHHHHHHCCCCCC
Q ss_conf             9284899999999998287670620107879888899999999961468777---8866-58789997799997798778
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHI---DVPT-VEFEGFGEHCQAIIRGNHVD   76 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~---~~~~-~~~c~~c~~c~~i~~~~~~d   76 (369)
                      +++|+.....|......+.+|| +||+||.|.||+|.+.++-+.|....-.-   ...+ ..|.++-   ..+..-+...
T Consensus        15 l~~~~e~~~~Lksl~~~~d~PH-ll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kk---lEistvsS~y   90 (351)
T KOG2035          15 LIYHEELANLLKSLSSTGDFPH-LLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKK---LEISTVSSNY   90 (351)
T ss_pred             CCCHHHHHHHHHHHCCCCCCCE-EEEECCCCCCCHHHHHHHHHHHHCCCCHHEEEEEEEEECCCCCE---EEEEEECCCC
T ss_conf             3318888899987414577870-78888898872111899999885787245056667886488863---7999942565


Q ss_pred             CCCCCCCCCCCHH--HHHHHHHHHHHH-HH----CCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf             2224533223345--556655544565-42----0465237751156648001678999997212211146650675433
Q 537021.9.peg.4   77 VVELDAASHTSID--DVREIIDQIYYK-PI----SARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKI  149 (369)
Q Consensus        77 ~~e~~~~s~~~id--~ir~l~~~~~~~-p~----~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~l  149 (369)
                      .+|+.|..-.-.|  -|.++++.+.+. |.    +-.|||++|.|||.+|.+||.||.+|||.+..++..||+|++.+++
T Consensus        91 HlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~Sri  170 (351)
T KOG2035          91 HLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRI  170 (351)
T ss_pred             EEEECHHHCCCCCHHHHHHHHHHHHHHCCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf             17747343375117999999999874141333266654899980357650889999999999986071699992674302


Q ss_pred             CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCC
Q ss_conf             03567543332102454001356787643101345625664456531676420011000111000000121032200013
Q 537021.9.peg.4  150 PITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLA  229 (369)
Q Consensus       150 l~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg  229 (369)
                      +++|+|||..++.+.+++++|...|..++++||+....+.+..||+.|+||+|+|+-+||-+- ..+...+.+. ..+.-
T Consensus       171 IepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~-~~n~~~~a~~-~~i~~  248 (351)
T KOG2035         171 IEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVR-VNNEPFTANS-QVIPK  248 (351)
T ss_pred             HHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH-HCCCCCCCCC-CCCCC
T ss_conf             267762205876789987899999999998733448499999999970643999999999998-5465432557-87799


Q ss_pred             CCCHHHHHHHHHHHHCCCHHHHH----HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             56777778888763013633467----88765430476213578777534899999974574122344998899999999
Q 537021.9.peg.4  230 LADRNRIMDLFGYLIKGDIINVL----QEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQY  305 (369)
Q Consensus       230 ~~~~~~i~~Ll~ai~~~d~~~al----~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~  305 (369)
                      .-....+.++.+.+.......-+    ..+..+......|..++..|+..+                             
T Consensus       249 ~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL~~CIPP~~Ilk~Ll~~L-----------------------------  299 (351)
T KOG2035         249 PDWEIYIQEIARVILKEQSPAKLLEVRGRLYELLSHCIPPNTILKELLEEL-----------------------------  299 (351)
T ss_pred             CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-----------------------------
T ss_conf             449999999999998603878899999999999865698588999999999-----------------------------


Q ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             86299899999999999999983027888999999999995
Q 537021.9.peg.4  306 SKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLA  346 (369)
Q Consensus       306 a~~i~~~~L~~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~  346 (369)
                      -...+...-....+...+-+.+++.+.-.-.++|.++.+.+
T Consensus       300 l~~~d~~~k~~~~~~Aa~yEhRl~lG~KaIfHLEaFVA~fM  340 (351)
T KOG2035         300 LLKCDTQLKLEVIQHAAKYEHRLRLGQKAIFHLEAFVAKFM  340 (351)
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             84588244899999998889998605236663999999999


No 54 
>KOG2028 consensus
Probab=99.93  E-value=7.8e-25  Score=203.36  Aligned_cols=316  Identities=22%  Similarity=0.313  Sum_probs=226.2

Q ss_pred             CCCHHHHH---HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf             92848999---999999982876706201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4    1 MIGQKPMI---KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV   77 (369)
Q Consensus         1 iiGq~~~~---~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~   77 (369)
                      .|||++++   ..|++.|++||+| +++||||||+||||+||.+|..-    ..                     ..--+
T Consensus       140 yvGQ~hlv~q~gllrs~ieq~~ip-SmIlWGppG~GKTtlArlia~ts----k~---------------------~Syrf  193 (554)
T KOG2028         140 YVGQSHLVGQDGLLRSLIEQNRIP-SMILWGPPGTGKTTLARLIASTS----KK---------------------HSYRF  193 (554)
T ss_pred             HCCHHHHCCCCHHHHHHHHCCCCC-CEEEECCCCCCHHHHHHHHHHHC----CC---------------------CCEEE
T ss_conf             505344148326899998708887-05886699876588999998605----77---------------------74279


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHH-HHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECC-CC-CCCHHHH
Q ss_conf             22453322334555665554456-542046523775115664800167899999721221114665067-54-3303567
Q 537021.9.peg.4   78 VELDAASHTSIDDVREIIDQIYY-KPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTE-IR-KIPITVL  154 (369)
Q Consensus        78 ~e~~~~s~~~id~ir~l~~~~~~-~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~-~~-~ll~TI~  154 (369)
                      +|+.+. +.++.++|++.+..+- ....+++-|++|||+|++|+..|..||-.+|.  ..+.||-+||+ |+ ++...+.
T Consensus       194 velSAt-~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~--G~I~lIGATTENPSFqln~aLl  270 (554)
T KOG2028         194 VELSAT-NAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVEN--GDITLIGATTENPSFQLNAALL  270 (554)
T ss_pred             EEEECC-CCCHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHCCCCEECC--CCEEEEECCCCCCCCCHHHHHH
T ss_conf             997414-5661889999999887876524406987377655323211003421306--7069985366897601127787


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHH----HCC---------CCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCH-------
Q ss_conf             5433321024540013567876431----013---------45625664456531676420011000111000-------
Q 537021.9.peg.4  155 SRCQRFDLHRISIGDLIELFTKILQ----EES---------IEFDPEAVAMIARASDGSARDGLSLLDQAIAR-------  214 (369)
Q Consensus       155 SRcq~~~f~~l~~~~i~~~L~~i~~----~E~---------i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~-------  214 (369)
                      |||.+|-+.+++.+.+...|.+-..    .|.         +.+++..++.++..++|+.|.|||.||-.++.       
T Consensus       271 SRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~g~  350 (554)
T KOG2028         271 SRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRSGQ  350 (554)
T ss_pred             HCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             31606673368889999999999876321025688999831245688999998704731888877899999988752477


Q ss_pred             -HHCCCCHHHHHHCC----------CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-H---
Q ss_conf             -00012103220001----------35677777888876301363346788765430476213578777534899-9---
Q 537021.9.peg.4  215 -CNDKIVTSSVRLML----------ALADRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHL-V---  279 (369)
Q Consensus       215 -~~~~i~~e~v~~ll----------g~~~~~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rd-l---  279 (369)
                       .+..++.++|.+.+          |....+.+-.+-+++..+|....+.++..+.+.|.||..+...|.++-.. +   
T Consensus       351 ~~~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSmRG~D~nAslY~LaRMLegGEdPLYVARRlvR~ASEDIGla  430 (554)
T KOG2028         351 SSRVLLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLA  430 (554)
T ss_pred             CCCCEECHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf             65640028889999853120004553057789999987601776552799999997168870799999998751033767


Q ss_pred             ---HHHHH--CCCCCCCCCCCHHHHHH---HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHH
Q ss_conf             ---99974--57412234499889999---9999862998999999999999999830278889--99999999995
Q 537021.9.peg.4  280 ---TRIKY--IPEMADTLLYSEAENAR---ALQYSKEVSITFLSRFWQMILKGISEIEGFSRPM--EAVEMVLIRLA  346 (369)
Q Consensus       280 ---l~~k~--~~~~~~~~~~~~~e~~~---i~~~a~~i~~~~L~~~lq~l~~a~~~Lk~n~np~--L~lE~lLlkL~  346 (369)
                         ++.+.  .-++...+.+++-+...   ...+|.--..-.++++|..+..+..+ ...+++.  +.+-..=.+|+
T Consensus       431 D~S~L~~Avaa~qav~~vGmPE~dviLAqC~v~lA~APKSievYra~~~vka~ls~-~~~~~~~vPlHlRNAPTkLM  506 (554)
T KOG2028         431 DPSALTQAVAAYQAVHFVGMPECDVILAQCVVYLARAPKSIEVYRAYNAVKACLSN-HQGPLPEVPLHLRNAPTKLM  506 (554)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHHCCCHHHH
T ss_conf             80366889999888888089358889999999998486303999999999999743-25788888730302737899


No 55 
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=99.93  E-value=1.2e-23  Score=194.67  Aligned_cols=310  Identities=17%  Similarity=0.210  Sum_probs=252.1

Q ss_pred             HHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf             99999982876706201078798888999999999614687778866587899977999977987782224533223345
Q 537021.9.peg.4   10 TLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSID   89 (369)
Q Consensus        10 ~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id   89 (369)
                      .|.+.++.+ +++.|||+|+.-.=+......+.+.+......                      -.++..+|+.. .   
T Consensus         6 ~l~~~lkk~-l~pvyli~G~e~~li~~~~~~i~~~~~~~~~~----------------------~~n~~~~d~~~-~---   58 (336)
T PRK05574          6 QLEAHLKKG-LAPVYLLYGDEPLLLQEAKDAIRAAARAQGFD----------------------ERNVFTVDGSE-T---   58 (336)
T ss_pred             HHHHHHHCC-CCCEEEEECCHHHHHHHHHHHHHHHHHCCCCC----------------------CEEEEEEECCC-C---
T ss_conf             999998278-98679998586999999999999986077865----------------------30589971686-9---


Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECHHHCCC----CHHHHHHHHHHHCCCCCCEEEEECCC--C------CCCHHHHHHH
Q ss_conf             5566555445654204652377511566480----01678999997212211146650675--4------3303567543
Q 537021.9.peg.4   90 DVREIIDQIYYKPISARFRVYIMDEVQMLST----AAFNGLLKTLEEPPPHVKFIFATTEI--R------KIPITVLSRC  157 (369)
Q Consensus        90 ~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~----~a~NaLLK~lEEPp~~~~fil~t~~~--~------~ll~TI~SRc  157 (369)
                      ++.++.+.+.-.|.-|++|++++.+++.++.    ...+.|.+.++.||+++..+|++..+  +      +...++..-+
T Consensus        59 ~~~~l~~~~~t~slf~~krlViv~~~~~~~~k~~~~~l~~l~~~l~~~~~~~~lvli~~~~~~d~~~k~~k~~k~l~~~~  138 (336)
T PRK05574         59 DWDDVLEACQSLPLFSDRKLVELRLPEGLTGKKGEEALKRLEAYLENPLPHTDLLLLAPLPKLDKRKEKSAWFKALKKKA  138 (336)
T ss_pred             CHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCE
T ss_conf             99999998648997789759999888766531137999999998707999976999987786336888899999998480


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHC-CCCHHHHHHCCCCCCHHHH
Q ss_conf             332102454001356787643101345625664456531676420011000111000000-1210322000135677777
Q 537021.9.peg.4  158 QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCND-KIVTSSVRLMLALADRNRI  236 (369)
Q Consensus       158 q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~-~i~~e~v~~llg~~~~~~i  236 (369)
                      ..+.|.+++..++..|+++.+..+|++++++++++++...+||++.+.+.+|++..++++ .|+.++|..+++......+
T Consensus       139 ~~i~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~It~~dV~~~v~~~~~~~~  218 (336)
T PRK05574        139 VVVEAQTPKEAELPQWIQQRLKQQGLRIDAAALQLLAERVEGNLLALAQEIEKLALLYPDGKITLEDVEEAVPDSARFDV  218 (336)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCH
T ss_conf             79980699989999999999998499989899999999721139999999999998378888789999998616433567


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC-------CCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             888876301363346788765430476213578777534899999974574-------1223449988999999998629
Q 537021.9.peg.4  237 MDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPE-------MADTLLYSEAENARALQYSKEV  309 (369)
Q Consensus       237 ~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~-------~~~~~~~~~~e~~~i~~~a~~i  309 (369)
                      |+|.+++..+|...++..++++...|.+|..++..+.+++|.+..++...+       ....+.+++.....+.++++++
T Consensus       219 f~L~dai~~~~~~~al~~l~~l~~~~~~~~~il~~l~~~~r~l~~ik~~~~~g~~~~~i~~~l~i~~~~~~~~~~~~~~~  298 (336)
T PRK05574        219 FDLVDAILAGKIARALRILDGLRLEGEEPIKLLAALQREFRLLLQLKILLQQGYPLQQLFKELRVWPYRRKLALRALQRL  298 (336)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHCC
T ss_conf             99999998789999999999999779972999999999999999999998769999999988399999999999999729


Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             9899999999999999983027888999999999995
Q 537021.9.peg.4  310 SITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLA  346 (369)
Q Consensus       310 ~~~~L~~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~  346 (369)
                      +...|.+++..+.+++..+|++.++.+++|+++++|.
T Consensus       299 s~~~L~~~l~~l~~~D~~iK~~~d~~~~lEl~ll~l~  335 (336)
T PRK05574        299 SLKQLEQAIQLLAETDRQIKTDYDKDLWLELFLLSLL  335 (336)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             9999999999999999997189995499999999842


No 56 
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=99.93  E-value=1.7e-23  Score=193.38  Aligned_cols=304  Identities=14%  Similarity=0.157  Sum_probs=239.0

Q ss_pred             CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             67062010787988889999999996146877788665878999779999779877822245332233455566555445
Q 537021.9.peg.4   20 IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIY   99 (369)
Q Consensus        20 ~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~   99 (369)
                      +| -|||+|+...=.......+-+.+...+.                      .-.|+..+|+.   ..+.+.++++.+.
T Consensus         1 ~P-vYll~GeE~~li~~~~~~i~~~~~~~~~----------------------~~fn~~~~dg~---e~~~~~~~l~~a~   54 (326)
T PRK07452          1 MP-IYLYWGEDDFALNQAIEKLIDQVVDPEW----------------------KSFNYSRLDGD---DAEQAIQALNEAM   54 (326)
T ss_pred             CC-EEEEEECCHHHHHHHHHHHHHHCCCCCC----------------------CCCCEEEECCC---CCCHHHHHHHHHC
T ss_conf             98-8999838289999999999996089544----------------------67623787375---5425999999862


Q ss_pred             HHHHCCCCCEEEEECHHHCCC---CHHHHHHHHHHHCCCCCCEEEEECC-CC---CCCHHHHHHHHHHHCCCC---CCHH
Q ss_conf             654204652377511566480---0167899999721221114665067-54---330356754333210245---4001
Q 537021.9.peg.4  100 YKPISARFRVYIMDEVQMLST---AAFNGLLKTLEEPPPHVKFIFATTE-IR---KIPITVLSRCQRFDLHRI---SIGD  169 (369)
Q Consensus       100 ~~p~~~~~kv~iid~a~~m~~---~a~NaLLK~lEEPp~~~~fil~t~~-~~---~ll~TI~SRcq~~~f~~l---~~~~  169 (369)
                      -.|+-|++|++|+.++..++.   +....|.+.++.||++|++||++++ ++   |+-..+........|..+   ..++
T Consensus        55 T~Pf~~~~RlVvvk~a~~~~~~~~~~~~~l~~~l~~~p~~t~lv~~~~~k~D~R~K~~K~l~k~~~~~ef~~~~~~~~~~  134 (326)
T PRK07452         55 TPPFGSGGRLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLPPPWDGEG  134 (326)
T ss_pred             CCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHEEEEEECCCCCCCHHH
T ss_conf             78877885599983661002487889999999861799975999984676323778789998401134540688657999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHH-C--CCCHHHHHHCCCCCCHHHHHHHHHHHHCC
Q ss_conf             35678764310134562566445653167642001100011100000-0--12103220001356777778888763013
Q 537021.9.peg.4  170 LIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCN-D--KIVTSSVRLMLALADRNRIMDLFGYLIKG  246 (369)
Q Consensus       170 i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~-~--~i~~e~v~~llg~~~~~~i~~Ll~ai~~~  246 (369)
                      +..|+.+.+.+.|.++++++++.++...++|++..-+-+|++..|.+ +  .|+.++|..+++. ....+|++.+++..+
T Consensus       135 l~~wi~~~~~~~g~~i~~~a~~~Lv~~~G~dl~~l~~EleKL~ly~~~~~~~It~e~V~~lv~~-~~~~iF~L~dAi~~~  213 (326)
T PRK07452        135 QKQLVERTAQELGVKLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSEKPISAEDVKALVSN-TTQNSLQLADALLQG  213 (326)
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCC-CCCCHHHHHHHHHCC
T ss_conf             9999999999869998999999999986843999999999999862899970689999988277-644099999999868


Q ss_pred             CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--------CCCCC-CHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             6334678876543047621357877753489999997457412--------23449-98899999999862998999999
Q 537021.9.peg.4  247 DIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMA--------DTLLY-SEAENARALQYSKEVSITFLSRF  317 (369)
Q Consensus       247 d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~--------~~~~~-~~~e~~~i~~~a~~i~~~~L~~~  317 (369)
                      |...++..++++...|.+|..++..+.++||.++.+|...+.+        ....+ ++.....+.+++++++.++|.++
T Consensus       214 ~~~~Al~~l~~Ll~~ge~pi~Ila~l~~q~r~ll~vk~l~~~G~~~~~~ia~~lgi~~P~r~~~~~~~~~~~s~~~L~~~  293 (326)
T PRK07452        214 NTGEALALIDDLLDANEPALRIVATLTGQFRTWLWVKLLVESGERDVKVIAKAAGIGNPKRIYFLRKEVQGLSSQQLLKL  293 (326)
T ss_pred             CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHH
T ss_conf             99999999999998799889999999999999999999997489779999998289982789999999867999999999


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             999999999830278889999999999953304
Q 537021.9.peg.4  318 WQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQ  350 (369)
Q Consensus       318 lq~l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~  350 (369)
                      ++.+.+++.++|++.+|..+||.++++||++.+
T Consensus       294 l~~l~~~D~~iKsG~~~~~ale~~v~~lc~~~~  326 (326)
T PRK07452        294 LPLLLDLEASLKQGANPINAFQDKLIELCQLLQ  326 (326)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
T ss_conf             999999999864799868999999999960439


No 57 
>PRK05629 hypothetical protein; Validated
Probab=99.92  E-value=8.1e-23  Score=188.47  Aligned_cols=305  Identities=13%  Similarity=0.144  Sum_probs=250.8

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             70620107879888899999999961468777886658789997799997798778222453322334555665554456
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYY  100 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~  100 (369)
                      |+-|||+|+...-.-..-..+-..+.-..+...                    -.++.++++. .+..+++   ++-.+.
T Consensus        16 pPvYLl~G~E~yLid~a~~~l~~~i~~~~~~~~--------------------~~n~~~~~~~-e~~~~~l---~~a~~~   71 (331)
T PRK05629         16 PAVHLVLGEDEFLAERARINIVHDIRSSMASPD--------------------SLQVTTLKAS-EITQGEL---LDALSP   71 (331)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCC--------------------CCEEEEEECC-CCCHHHH---HHHCCC
T ss_conf             997999717199999999999999986288744--------------------6225885078-7999999---987375


Q ss_pred             HHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCC---CCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             54204652377511566480016789999972122111466506754---330356754333210245400135678764
Q 537021.9.peg.4  101 KPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIR---KIPITVLSRCQRFDLHRISIGDLIELFTKI  177 (369)
Q Consensus       101 ~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~---~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i  177 (369)
                       |.-|.+|++|+.+++..+.+....++.-+++|++.|++|++....+   ++..+|..-.-.+.+.++.+.++..|+.+.
T Consensus        72 -~~F~~~RlVvv~~~~~~~~~~~d~ll~y~~~p~p~t~LV~~~~~~dkrkkl~k~l~k~g~v~e~~~l~~~~l~~wi~~~  150 (331)
T PRK05629         72 -SLFAEDRVVVLTNMDQAGQDAVDLALSAAVDPSPGTYLIVMHSGGGRSKSMVKKLEKVAVVHDAAKLKDRDRPGWVKQE  150 (331)
T ss_pred             -CCCCCCEEEEEECHHHCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHCCEEEEECCCCCHHHHHHHHHHH
T ss_conf             -8888825999957253064479999998419999649999845875106799998607469866889999999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             31013456256644565316764200110001110000001210322000135677777888876301363346788765
Q 537021.9.peg.4  178 LQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLFGYLIKGDIINVLQEFSS  257 (369)
Q Consensus       178 ~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll~ai~~~d~~~al~~l~~  257 (369)
                      +..+|.+++++++++++...+++++...+-++|++++.++.|+.++|..+++......+|++.+++..+|...++..++.
T Consensus       151 ~~~~g~~i~~~A~~~L~~~~G~DL~~l~~El~KL~~~~~g~It~e~V~~~~~~~~e~~~F~l~dai~~~~~~~Al~~l~~  230 (331)
T PRK05629        151 FKNHKVQVTPDVIHALLEGVGSDLRELASAVSQLVEDTQGNVTVEKVRAYYVGVAEVSGFDIADSACAGQVSKAVASTRR  230 (331)
T ss_pred             HHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             99869997999999999996804999999999984077998589999998269733528679999986688999999999


Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHCCC------CCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC-
Q ss_conf             430476213578777534899999974574------1223449988999999998629989999999999999998302-
Q 537021.9.peg.4  258 QYDSGVNPSVILHDLAEFTHLVTRIKYIPE------MADTLLYSEAENARALQYSKEVSITFLSRFWQMILKGISEIEG-  330 (369)
Q Consensus       258 l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~------~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~l~~a~~~Lk~-  330 (369)
                      +...|.+|..++..|..++|.+..+.....      ....+.+++....++..++++++.+.|.+++..+.+++..+|+ 
T Consensus       231 ll~~g~~Pv~i~a~L~~~~r~l~~~~~~~~~~~~~~iA~~Lgv~P~~vkk~~~qar~~s~~~L~~a~~~l~~~D~~~Kgg  310 (331)
T PRK05629        231 ALQLGTSPVALAAALSMKVGQIARLYSTRGRINGFELAKELGMPPFVVEKTAKVARNWSGDAVSEAVILMADLDAAVKGQ  310 (331)
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99759992999999999999999999751699989999883999899999999982699999999999999999982078


Q ss_pred             CCCHHHHHHHHHHHHHHHCC
Q ss_conf             78889999999999953304
Q 537021.9.peg.4  331 FSRPMEAVEMVLIRLAHAVQ  350 (369)
Q Consensus       331 n~np~L~lE~lLlkL~~~~~  350 (369)
                      ..+|.+++|.+++++|.+.+
T Consensus       311 ~~dp~~alE~~i~~i~~~~~  330 (331)
T PRK05629        311 SGDPEFAIESAVRRVAELAR  330 (331)
T ss_pred             CCCHHHHHHHHHHHHHHHHC
T ss_conf             89888999999999999826


No 58 
>PRK07914 hypothetical protein; Reviewed
Probab=99.85  E-value=5.4e-19  Score=160.26  Aligned_cols=301  Identities=16%  Similarity=0.164  Sum_probs=243.0

Q ss_pred             CCEEEHHCCCCCCCHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC--CCCCCCCCCCCHHHHHHHHH
Q ss_conf             670620107879888899-999999961468777886658789997799997798778--22245332233455566555
Q 537021.9.peg.4   20 IAQSYMLSGTRGIGKTTT-ARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVD--VVELDAASHTSIDDVREIID   96 (369)
Q Consensus        20 ~~ha~lf~G~~G~GK~~~-a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d--~~e~~~~s~~~id~ir~l~~   96 (369)
                      .+.-|||+|+...=.... ..+.....                        ....+||  +.++++.. ....+   +.+
T Consensus         4 pAPvyLi~G~E~~L~erav~~~~~~ar------------------------~~~~~~d~~~~~l~a~~-~~~~~---l~~   55 (320)
T PRK07914          4 PSPLHLVLGDEELLVERAVAAVLRSAR------------------------KRAGTADVPVDRLRAGD-VSTYE---LAE   55 (320)
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHHHHH------------------------HHCCCCCCEEEEECCCC-CCHHH---HHH
T ss_conf             998799970819999999999999998------------------------50379984346621466-88889---998


Q ss_pred             HHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCC---CCCCHHHHHH-HHHHHCCCC-CCHHHH
Q ss_conf             44565420465237751156648001678999997212211146650675---4330356754-333210245-400135
Q 537021.9.peg.4   97 QIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEI---RKIPITVLSR-CQRFDLHRI-SIGDLI  171 (369)
Q Consensus        97 ~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~---~~ll~TI~SR-cq~~~f~~l-~~~~i~  171 (369)
                      -.+ .|.-|.+|+++|.+++.++.+....|+..+.+||+.|..++..+..   .+++..++.- ..++.+.++ .+.+..
T Consensus        56 ~~s-pSLFae~RlVvv~~~~~~~~~~~~~l~~yl~~p~~~t~LV~~h~gg~k~Kkl~~~lkk~ga~v~~~~~l~k~~e~~  134 (320)
T PRK07914         56 LLS-PSLFAEERVVVLEAAAEAGKDAVALIESAAADLPAGTVLVVVHSGGGRAKALANQLRKLGAQVHPCARITKASERA  134 (320)
T ss_pred             HHC-CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHH
T ss_conf             718-6766884499983611026889999999852999980899970587404679999997699898655658868999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHH
Q ss_conf             67876431013456256644565316764200110001110000001210322000135677777888876301363346
Q 537021.9.peg.4  172 ELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLFGYLIKGDIINV  251 (369)
Q Consensus       172 ~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll~ai~~~d~~~a  251 (369)
                      .|+.+-+...|..+++++.+.++...++++|..-+.++|++++.++.|+.+.|..+++-.-+...|++.+++..||...+
T Consensus       135 ~~v~~e~~~~g~~i~~~A~~~Lv~~vG~dl~eLaae~~qL~~d~~g~It~~~V~~~~~g~~e~~~F~vaDaa~~g~~~~A  214 (320)
T PRK07914        135 DFVRKEFRSLRVKVDDETVTALLDAVGSDIRELASACSQLVADTGGAVDAAAVRRYHSGKAEVKGFDIADKAVAGDVAGA  214 (320)
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEHHHHHHHHHCCCHHHH
T ss_conf             99999999859999999999999998623999999999996057997369999999289712209999999987899999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             788765430476213578777534899999974574----1223449988999999998629989999999999999998
Q 537021.9.peg.4  252 LQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPE----MADTLLYSEAENARALQYSKEVSITFLSRFWQMILKGISE  327 (369)
Q Consensus       252 l~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~----~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~l~~a~~~  327 (369)
                      +..++.....|.+|..++..|...+|.+..++....    ....+.+++...++...++++++.+.|.++++.+.+++.+
T Consensus       215 L~~lr~al~~G~~pv~i~~alA~~~R~la~v~~~~~~~~~~A~~lg~~Pw~v~ka~~qar~ws~~~l~~ai~~la~~D~~  294 (320)
T PRK07914        215 AEALRWAMMRGEPHVVLADALAEAVHTIGRVGPLSGDPYRLAGQLGMPPWRVQKAQKQARRWSRDTVATAMRVVAALNAD  294 (320)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             99999999749974999999999999999988613998999988299959999999998179999999999999999998


Q ss_pred             HHCCC-CHHHHHHHHHHHHHHHC
Q ss_conf             30278-88999999999995330
Q 537021.9.peg.4  328 IEGFS-RPMEAVEMVLIRLAHAV  349 (369)
Q Consensus       328 Lk~n~-np~L~lE~lLlkL~~~~  349 (369)
                      +|+.. +|..++|.+++++|.+.
T Consensus       295 vKg~~~dp~~alE~~v~~ia~~~  317 (320)
T PRK07914        295 VKGAAADADYALESAVRRVAELV  317 (320)
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHH
T ss_conf             54788887889999999999984


No 59 
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=99.84  E-value=2.6e-18  Score=155.19  Aligned_cols=312  Identities=15%  Similarity=0.137  Sum_probs=238.5

Q ss_pred             HHHHHHC--CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf             9999982--87670620107879888899999999961468777886658789997799997798778222453322334
Q 537021.9.peg.4   11 LTNAFKS--GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSI   88 (369)
Q Consensus        11 l~~~~~~--~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~i   88 (369)
                      +.+++.+  ..++ +|||+||.---+...+..+++.+.-.. ..+                     .++..+++.. .. 
T Consensus         9 ~~~f~~~p~~~~~-~~LlyG~d~glv~e~~~~l~~~~~~~~-~~~---------------------f~~~~l~~~e-l~-   63 (343)
T PRK06585          9 IDRFLARPDGKIR-AVLLYGPDRGLVRERARRLAKSVVDDP-DDP---------------------FAVVRLDGDE-LD-   63 (343)
T ss_pred             HHHHHHCCCCCCE-EEEEECCCHHHHHHHHHHHHHHHCCCC-CCC---------------------CEEEEECHHH-HH-
T ss_conf             9999819864765-899963876479999999999725566-787---------------------4157747998-83-


Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH------HHHHHHHC
Q ss_conf             555665554456542046523775115664800167899999721221114665067543303567------54333210
Q 537021.9.peg.4   89 DDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVL------SRCQRFDL  162 (369)
Q Consensus        89 d~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~------SRcq~~~f  162 (369)
                      ++.-.+.+.++-.|.-|++|+++|+++.   .....++-..+++|++.+++|+.+.+..+= ..++      ..|-.+.+
T Consensus        64 ~d~~~l~de~~t~slF~~~rlI~i~~~~---d~~~~~l~~~l~~~~~~~~lIi~a~~L~k~-skLrk~~e~~~~~~~i~c  139 (343)
T PRK06585         64 ADPARLEDEANTISLFGGRRLIWVRAGG---KSLAAALKALLAEPPGDAFIVIEAGDLKKG-SSLRKLFETAASAAAIPC  139 (343)
T ss_pred             CCHHHHHHHHHCCCCCCCCEEEEEECCC---HHHHHHHHHHHHCCCCCEEEEEECCCCCCC-CHHHHHHHHCCCEEEEEE
T ss_conf             3999999998476876898489972687---256999999981789982899973897731-189999986478699950


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHH--HCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf             24540013567876431013456256644565316764200110001110000--0012103220001356777778888
Q 537021.9.peg.4  163 HRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARC--NDKIVTSSVRLMLALADRNRIMDLF  240 (369)
Q Consensus       163 ~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~--~~~i~~e~v~~llg~~~~~~i~~Ll  240 (369)
                      -+.+..++.+++.+.+..+|++++++++.+++..++|+...+.+-+|++..|.  ++.++.++|..+++......++++.
T Consensus       140 Y~d~~~~l~~~i~~~l~~~g~~i~~~a~~~L~~~~g~d~~~~~~EleKL~ly~~~~~~It~edv~~~v~~~~~~~~~~l~  219 (343)
T PRK06585        140 YADDERDLARLIDDELAKAGLRITPDARAYLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLDDAA  219 (343)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHH
T ss_conf             06998899999999999829997799999999873427999999999999984899978999999986864102499999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-------CC--CCCCHHHHHHHHHHHHHCCH
Q ss_conf             7630136334678876543047621357877753489999997457412-------23--44998899999999862998
Q 537021.9.peg.4  241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMA-------DT--LLYSEAENARALQYSKEVSI  311 (369)
Q Consensus       241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~-------~~--~~~~~~e~~~i~~~a~~i~~  311 (369)
                      ++++.||...+...++++...|.+|..++..+.++|+.+..++...+.+       ..  ..+...+...+.++++.++.
T Consensus       220 da~l~G~~~~a~~~l~~l~~~g~~pi~il~~l~~~~~~L~~i~~~~~~g~~~~~ai~~~rPpiF~k~k~~~~~ql~~w~~  299 (343)
T PRK06585        220 DAALAGDLAGFERALDRARAEGTAPVLILRAALRHFQQLHIVRLKVENGKSAAQAIASLRPPVFFKRKPDFEKALRRWSL  299 (343)
T ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCH
T ss_conf             99980899999999999884578779999999999999999999987034599999864899984669999999980999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHCCC
Q ss_conf             9999999999999998302788-899999999999533049
Q 537021.9.peg.4  312 TFLSRFWQMILKGISEIEGFSR-PMEAVEMVLIRLAHAVQL  351 (369)
Q Consensus       312 ~~L~~~lq~l~~a~~~Lk~n~n-p~L~lE~lLlkL~~~~~~  351 (369)
                      ..|.+++..+.+++..+|.+.. +...+|.+++++|.....
T Consensus       300 ~~L~~al~~l~~~E~~~K~~~~~~~~i~~~~ll~ia~~a~~  340 (343)
T PRK06585        300 ERLLRALERLQQAELDCRRNPALAEAIAQRALLSIAVEARR  340 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999998669965999999999999999875


No 60 
>pfam12169 DNA_pol3_gamma3 DNA polymerase III subunits gamma and tau domain III. This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with pfam00004. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau.
Probab=99.84  E-value=2.3e-19  Score=163.05  Aligned_cols=143  Identities=46%  Similarity=0.750  Sum_probs=138.0

Q ss_pred             CCHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf             21032200013567777788887630136334678876543047621357877753489999997457412234499889
Q 537021.9.peg.4  219 IVTSSVRLMLALADRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAE  298 (369)
Q Consensus       219 i~~e~v~~llg~~~~~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e  298 (369)
                      |+.++|.+++|.++++.++++++++.++|..+++..++++++.|.|+..++++++.++|+++++|..++......+++++
T Consensus         1 It~~~V~~mLG~~~~~~l~~L~~aI~~~d~~~~l~~l~~l~~~G~d~~~~l~~L~~~~r~l~~~k~~~~~~~~~~~~~~~   80 (143)
T pfam12169         1 VSAAQVRDMLGLADRGRVIDLLEAILEGDAAAALAEFRDQYAAGADPVVVLRDLLELLHLLTRLKIAPDAADDLSLPEEE   80 (143)
T ss_pred             CCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf             97999999848998899999999998289999999999999879899999999999999999998676300012257788


Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             999999986299899999999999999983027888999999999995330499989999976
Q 537021.9.peg.4  299 NARALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSPEEIARYI  361 (369)
Q Consensus       299 ~~~i~~~a~~i~~~~L~~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~~~s~~~~~~~~  361 (369)
                      .+.+.++|+.++.+++.++||++.++..+++.++||++.|||+++||||+.+.|+|+++++++
T Consensus        81 ~~~l~~~a~~~~~~~L~~~~qil~~~~~el~~s~~p~~~lEm~llRl~~~~~~~~~~~~~~~~  143 (143)
T pfam12169        81 RERIAALAKKLSPEVLSRLWQMLLKGIEEVKNAPDPRQAAEMALLRLAYAADLPSPEEALRRL  143 (143)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHC
T ss_conf             999999986067999999999999999997428886999999999999837594999998649


No 61 
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=99.80  E-value=1.1e-16  Score=143.17  Aligned_cols=306  Identities=12%  Similarity=0.115  Sum_probs=232.2

Q ss_pred             HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf             99999998287670620107879888899999999961468777886658789997799997798778222453322334
Q 537021.9.peg.4    9 KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSI   88 (369)
Q Consensus         9 ~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~i   88 (369)
                      .-|.+.+.+|++|.+|||+|+..-=--..+..+++.+...+...               .+    +.|  |      ...
T Consensus         4 ~e~d~~ik~~~~~~~ylLyG~d~fli~~y~~~I~~~~~~~~~~~---------------~~----yfd--E------~d~   56 (328)
T PRK08487          4 KELDTLLKQNKLPNAFFLYGEDEFQIEYYAKEISSKFKPEELLK---------------EL----YFD--E------YNF   56 (328)
T ss_pred             HHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCHHH---------------HC----CCC--C------CCH
T ss_conf             89999986598884599956857589999999999857752112---------------00----226--5------788


Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH--HH----HHHC
Q ss_conf             55566555445654204652377511566480016789999972122111466506754330356754--33----3210
Q 537021.9.peg.4   89 DDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSR--CQ----RFDL  162 (369)
Q Consensus        89 d~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SR--cq----~~~f  162 (369)
                      ++   +...++..|.-|+.|+++|.....+.......|+..+|.||.+.++|....+..+-- .+.+-  |.    .++|
T Consensus        57 ~~---i~~~l~~~sLFg~~klv~IK~~~ki~~k~l~~Li~~~~~~~~n~~Ii~~~~~~~k~~-~~~k~~~~~~~~~~V~f  132 (328)
T PRK08487         57 SQ---AKDFLSQGSLFGGKNLLVIKTDKKIPKKELKLLIELCEKNSDNFFIIELYEASMKSS-DTEKIFTPKFIAKFVRF  132 (328)
T ss_pred             HH---HHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCHHHHH-HHHHHHHHHCCEEEEEE
T ss_conf             99---999973515347774799957774552269999998628977789999706133456-78887766336237751


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             24540013567876431013456256644565316764200110001110000001210322000135677777888876
Q 537021.9.peg.4  163 HRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLFGY  242 (369)
Q Consensus       163 ~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll~a  242 (369)
                      .++...++..|+++.+.+.|+.++++++..++...++|+.-+.+-+|+...+ +..|+.++|..+.+....-.+++++++
T Consensus       133 f~p~~~el~~~i~~~ak~~g~~Is~~al~~L~e~~g~dL~~~~nELeKL~l~-~~~It~edI~~l~~~~~~~~~~el~~~  211 (328)
T PRK08487        133 FKPNAWEALKLLQERAKELGLDIDQNALNHLFEIQNENLYLAANELEKLAIL-DAPITLKDIDRLVFGLGSVSFEDLFLK  211 (328)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             3998689999999999991997799999999998596399999899999853-787889999998557666779999999


Q ss_pred             HHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH----CCC--CCCCC--CCCHHHHHHHHHHHHHCCHHHH
Q ss_conf             301363346788765430476213578777534899999974----574--12234--4998899999999862998999
Q 537021.9.peg.4  243 LIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKY----IPE--MADTL--LYSEAENARALQYSKEVSITFL  314 (369)
Q Consensus       243 i~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~----~~~--~~~~~--~~~~~e~~~i~~~a~~i~~~~L  314 (369)
                      ++++.  .....+.++.+.|.+...++..+.++|..+...+.    .+.  ..+.+  ..++...+.+.++|.+++.++.
T Consensus       212 l~~kk--~~~~~l~~lle~g~n~i~li~~l~~~f~~Lf~~~~~ik~~G~~d~~~ilGy~pP~~i~~~~~~~a~~~~~~~~  289 (328)
T PRK08487        212 LLKKK--DIKDDLFKLLEEGFNEIALLNSLYRFFYQLFLFFAYIKINGKPDAKEILGYKPPKQIAENLAKQALRLKEAQY  289 (328)
T ss_pred             HHCCC--CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHCCHHHH
T ss_conf             97537--2899999999758778999999999999999999999980996889984899988999999999873389999


Q ss_pred             HHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHH
Q ss_conf             999999999999830278--8899999999999533
Q 537021.9.peg.4  315 SRFWQMILKGISEIEGFS--RPMEAVEMVLIRLAHA  348 (369)
Q Consensus       315 ~~~lq~l~~a~~~Lk~n~--np~L~lE~lLlkL~~~  348 (369)
                      .+++..+.+++.+++.++  ++...+=..|+++-..
T Consensus       290 ~~if~~L~~~e~~~kt~~~~~k~~~l~~~l~~iq~~  325 (328)
T PRK08487        290 KEIFELLLEWELELKTNSKIDKKEFLFSTLLKIQRI  325 (328)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             999999999999986255556468999999999975


No 62 
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251   This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=99.78  E-value=4.3e-19  Score=161.02  Aligned_cols=199  Identities=26%  Similarity=0.384  Sum_probs=140.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHH-HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf             9284899999999998287670620107879888899999-999961468777886658789997799997798778222
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARI-IARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVE   79 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~-~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e   79 (369)
                      ||||+.=+++|+-|+=-=+=-| -++|||||+|||.+||. |=.+--|...        |++.           .--|+|
T Consensus        67 IiGQe~GI~ALKAALCGPNPQH-VIiYGPPGVGKTAAARLVLeeAKk~~~S--------PFke-----------~A~FVE  126 (532)
T TIGR02902        67 IIGQEEGIKALKAALCGPNPQH-VIIYGPPGVGKTAAARLVLEEAKKNPAS--------PFKE-----------EAAFVE  126 (532)
T ss_pred             CCCCHHHHHHHHHHCCCCCCCE-EEEECCCCCCHHHHHHHHHHHHHCCCCC--------CCCC-----------CCEEEE
T ss_conf             5673556899998606868963-8987886961789999999986508753--------7898-----------866898


Q ss_pred             CCCCCC----CCHHH-----HHH----------------HHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC-
Q ss_conf             453322----33455-----566----------------5554456542046523775115664800167899999721-
Q 537021.9.peg.4   80 LDAASH----TSIDD-----VRE----------------IIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP-  133 (369)
Q Consensus        80 ~~~~s~----~~id~-----ir~----------------l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP-  133 (369)
                      |||+.-    +||.|     |.|                =..-+.-+.+.|   |.+|||.=-|+.--=|.|||.||.= 
T Consensus       127 iDATT~RFDERGIADPLIGSVHDPIYQGAGplG~AGIPQPK~GAVT~AHGG---vLFIDEIGELHP~~MNKLLKVLEDRK  203 (532)
T TIGR02902       127 IDATTARFDERGIADPLIGSVHDPIYQGAGPLGVAGIPQPKPGAVTKAHGG---VLFIDEIGELHPVQMNKLLKVLEDRK  203 (532)
T ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---EEEECCCCCCCHHHHHHHHHHHHCCC
T ss_conf             505103602146666567761585333765457885575877763202586---55121246658243531411330222


Q ss_pred             ---------------------------CCCCCEEEE-ECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             ---------------------------221114665-0675433035675433321024540013567876431013456
Q 537021.9.peg.4  134 ---------------------------PPHVKFIFA-TTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIEF  185 (369)
Q Consensus       134 ---------------------------p~~~~fil~-t~~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~  185 (369)
                                                 |..-+.|-+ |.+|+-|+|.|||||-=+.||+|..+||.+.-++-++|=|+.+
T Consensus       204 VFLdSAYY~s~~pniP~hI~dIFqnGlPADFRLiGATTR~PeEIpPAlRSRC~EIFFR~L~~EEi~~iAk~AaeKIg~~l  283 (532)
T TIGR02902       204 VFLDSAYYSSEDPNIPSHIRDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLKEEIKEIAKNAAEKIGLNL  283 (532)
T ss_pred             CHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             00001235877786542789972067873401213336987767834650522677168887899999876565304654


Q ss_pred             CHHHHHHHHHCCCCCCCHHHHCCCCCCCH---H--HCCCCHHHH
Q ss_conf             25664456531676420011000111000---0--001210322
Q 537021.9.peg.4  186 DPEAVAMIARASDGSARDGLSLLDQAIAR---C--NDKIVTSSV  224 (369)
Q Consensus       186 d~~~l~~ia~~s~GslR~Al~lLeq~i~~---~--~~~i~~e~v  224 (369)
                      +++|+++|.++|.. =|+|+|++ |+.+.   .  ...|..++|
T Consensus       284 ~~~Al~~I~~Ya~n-GREAvN~~-QLAaG~a~~E~Rk~I~~~Di  325 (532)
T TIGR02902       284 EKEALDLIAKYASN-GREAVNLV-QLAAGIALGENRKRILAEDI  325 (532)
T ss_pred             CHHHHHHHHHHHCC-CCHHHHHH-HHHHHHEECCCCCEECHHHH
T ss_conf             75479999987405-40677899-99731401288761205464


No 63 
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=99.77  E-value=3.8e-16  Score=139.24  Aligned_cols=311  Identities=16%  Similarity=0.183  Sum_probs=236.0

Q ss_pred             HHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC-CCCCCH
Q ss_conf             9999998287670620107879888899999999961468777886658789997799997798778222453-322334
Q 537021.9.peg.4   10 TLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDA-ASHTSI   88 (369)
Q Consensus        10 ~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~-~s~~~i   88 (369)
                      .+...+.+++++..|+++|++-.=....+..+.+... .                        ...|+.++.. .++.  
T Consensus         5 ~~~~~l~~~~~~~v~ll~G~d~~l~~e~~~~i~~~~~-~------------------------~~~~~~~~~~~~~~~--   57 (334)
T COG1466           5 ELAKHLKKKNLMPVYLLYGEDEGLLEEAADAILKRAL-A------------------------DGFDENYSFFDDSEL--   57 (334)
T ss_pred             HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH-H------------------------CCCCEEEEECCCCCC--
T ss_conf             8999861478751899966864689999999999734-3------------------------156613454365556--


Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECHHHCC-CCHHHHHHHHHHHCC-CCCCEEEEECC---CCCCCHHHHHH--HHHHH
Q ss_conf             5556655544565420465237751156648-001678999997212-21114665067---54330356754--33321
Q 537021.9.peg.4   89 DDVREIIDQIYYKPISARFRVYIMDEVQMLS-TAAFNGLLKTLEEPP-PHVKFIFATTE---IRKIPITVLSR--CQRFD  161 (369)
Q Consensus        89 d~ir~l~~~~~~~p~~~~~kv~iid~a~~m~-~~a~NaLLK~lEEPp-~~~~fil~t~~---~~~ll~TI~SR--cq~~~  161 (369)
                       ++-.+.+.+...|.-|+.+++.|..++... .+..-.+......|| ..++|++....   ..+...++.+=  +..+.
T Consensus        58 -~~~~~~~~~~s~~lF~~~~~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~  136 (334)
T COG1466          58 -DWADLLSELESPSLFGEKRLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVVE  136 (334)
T ss_pred             -CHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf             -8999998862768778885799877654566427899999853689786899996188752778789888744473466


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHC-CCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf             02454001356787643101345625664456531676420011000111000000-12103220001356777778888
Q 537021.9.peg.4  162 LHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCND-KIVTSSVRLMLALADRNRIMDLF  240 (369)
Q Consensus       162 f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~-~i~~e~v~~llg~~~~~~i~~Ll  240 (369)
                      ..+++..++.+|+...+.+.|++++++++++++...+|+++.+-+-++++..++.+ .|+.++|...++.......|++.
T Consensus       137 ~~~~~~~~l~~~i~~~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~  216 (334)
T COG1466         137 CKPLDEAELPQWIKKRAKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLA  216 (334)
T ss_pred             ECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHH
T ss_conf             25887788999999999991898899999999998588299999999999874789866799999997364557889999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-------CCCCCCHHHHHHHHHHHHHCCHHH
Q ss_conf             7630136334678876543047621357877753489999997457412-------234499889999999986299899
Q 537021.9.peg.4  241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMA-------DTLLYSEAENARALQYSKEVSITF  313 (369)
Q Consensus       241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~-------~~~~~~~~e~~~i~~~a~~i~~~~  313 (369)
                      +++..||...++..++++...|.+|..++..+.+.|+.+..++...+.+       .....+......+.+...+++...
T Consensus       217 dail~g~~~~a~~~l~~L~~~ge~p~~il~~l~~~f~~~~~l~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~r~s~~~  296 (334)
T COG1466         217 DALLKGDVKKALRLLRDLLLEGEEPLKLLAALTRQFRLLLQLKALAEKGKSLQQAAKSLGIPYRRKKLFKKAARRLSLKQ  296 (334)
T ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCHHH
T ss_conf             99987898999999999997699889999999999999999999997364699999882892878899999998759999


Q ss_pred             HHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Q ss_conf             9999999999999830278-8899999999999533
Q 537021.9.peg.4  314 LSRFWQMILKGISEIEGFS-RPMEAVEMVLIRLAHA  348 (369)
Q Consensus       314 L~~~lq~l~~a~~~Lk~n~-np~L~lE~lLlkL~~~  348 (369)
                      +.++++.+.+.+..++++. +|...++..+++++..
T Consensus       297 l~~~l~~l~~~d~~~K~~~~d~~~~l~~~l~~~~~~  332 (334)
T COG1466         297 LLKALRLLAQLDYQIKTGYGDPVWALELFLLRLLEL  332 (334)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC
T ss_conf             999999999999998457766006899999998542


No 64 
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252   This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=99.77  E-value=9.9e-19  Score=158.30  Aligned_cols=182  Identities=26%  Similarity=0.403  Sum_probs=132.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHH---HHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf             928489999999999828767062010787988889999999---99614687778866587899977999977987782
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIA---RSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV   77 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A---~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~   77 (369)
                      ||||+.+++.|-.=+.+-==-| .|++||||+||||.||..=   |.++.+--..+.                     .|
T Consensus       157 iVGQerAI~aLlaK~aSPfPQH-iiLYGPPGVGKTTaARl~LEe~K~~~~tPF~~DA---------------------~F  214 (616)
T TIGR02903       157 IVGQERAIKALLAKLASPFPQH-IILYGPPGVGKTTAARLALEEAKKLKNTPFAEDA---------------------PF  214 (616)
T ss_pred             CCCHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCC---------------------CE
T ss_conf             3334689999997631888660-7855733884789999987621368744761137---------------------85


Q ss_pred             CCCCCCC---------C---CCHHH------HHHHHHHH--------HHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHH
Q ss_conf             2245332---------2---33455------56655544--------565420465237751156648001678999997
Q 537021.9.peg.4   78 VELDAAS---------H---TSIDD------VREIIDQI--------YYKPISARFRVYIMDEVQMLSTAAFNGLLKTLE  131 (369)
Q Consensus        78 ~e~~~~s---------~---~~id~------ir~l~~~~--------~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lE  131 (369)
                      +|+||+.         |   .+|-|      =|+|-|.=        .--.+.|   |.+|||.--|-.==||.|||.||
T Consensus       215 vEVDGtTLRWDPREvTNPLLGSVHDPIYQGa~RDLAE~GvPEPk~GLVT~AHGG---vLFIDEIGELD~lLQnKLLKVLE  291 (616)
T TIGR02903       215 VEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKLGLVTDAHGG---VLFIDEIGELDPLLQNKLLKVLE  291 (616)
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCC---EEEEECHHHHHHHHHHHHHHHHC
T ss_conf             751576266774101477677625765567640110478798989871004775---67650211222787632444322


Q ss_pred             HCCCC--------------------------CCEEE---EECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             21221--------------------------11466---50675433035675433321024540013567876431013
Q 537021.9.peg.4  132 EPPPH--------------------------VKFIF---ATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQEES  182 (369)
Q Consensus       132 EPp~~--------------------------~~fil---~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~  182 (369)
                      .---.                          .=|||   +|.+|+.|-|++||||.=+.|.||++++|..-..+-+++=|
T Consensus       292 DKrV~F~SsYYDpdD~NvPkYIK~lFe~GAPADFvLIGATTr~P~eINpALRSRCaEvfFePL~p~dI~~Iv~~AA~kln  371 (616)
T TIGR02903       292 DKRVEFSSSYYDPDDENVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIKEIVLNAAEKLN  371 (616)
T ss_pred             CCEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCHHHCCHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf             64366532124875378655888852268882568726615882440512330143132179887899999999888617


Q ss_pred             CCCCHHHHHHHHHCC-CCCCCHHHHCCC
Q ss_conf             456256644565316-764200110001
Q 537021.9.peg.4  183 IEFDPEAVAMIARAS-DGSARDGLSLLD  209 (369)
Q Consensus       183 i~~d~~~l~~ia~~s-~GslR~Al~lLe  209 (369)
                      +.+.++.-.+||++. +|  |+|+++|=
T Consensus       372 v~L~~gV~e~Ia~YTieG--RkAvnILA  397 (616)
T TIGR02903       372 VKLAEGVEELIARYTIEG--RKAVNILA  397 (616)
T ss_pred             CCCCCCHHHHHHHCCCCC--HHHHHHHH
T ss_conf             700036487872147131--12223465


No 65 
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.76  E-value=8.4e-18  Score=151.48  Aligned_cols=179  Identities=25%  Similarity=0.306  Sum_probs=139.7

Q ss_pred             CCCHHHHHHHHHHHHHCCC-----CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf             9284899999999998287-----67062010787988889999999996146877788665878999779999779877
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGR-----IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHV   75 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~-----~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~   75 (369)
                      .|||+++++.|+-+++..+     +.| .||+||||.||||+|.++|+.++..-....+|..+                 
T Consensus        27 fiGQ~~i~~~L~v~i~Aak~r~e~ldH-~Ll~GPPGlGKTTLA~iiA~E~~~~~~~tsGP~le-----------------   88 (328)
T PRK00080         27 FIGQEKVKENLKIFIEAAKKRGEALDH-VLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE-----------------   88 (328)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCCC-----------------
T ss_conf             359599999999999999964999880-57658899889999999999868881562450016-----------------


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCC------------------C
Q ss_conf             8222453322334555665554456542046523775115664800167899999721221------------------1
Q 537021.9.peg.4   76 DVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPH------------------V  137 (369)
Q Consensus        76 d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~------------------~  137 (369)
                                 +..++-.+..++      ...-|++|||.|+|++...-.|.-.||..--.                  -
T Consensus        89 -----------k~~DL~~iLt~l------~~~dvLFIDEIHRl~~~vEE~LY~AMEDf~iDi~iG~g~~Ar~~~i~L~pF  151 (328)
T PRK00080         89 -----------KAGDLAALLTNL------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPF  151 (328)
T ss_pred             -----------CHHHHHHHHHHC------CCCCEEEEHHHHHCCHHHHHHHHHHHHHCEEEEEECCCCCCEEEECCCCCE
T ss_conf             -----------747899999608------878767650653248889988579877523457864786532455589983


Q ss_pred             CEEEEECCCCCCCHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCH
Q ss_conf             146650675433035675433-32102454001356787643101345625664456531676420011000111000
Q 537021.9.peg.4  138 KFIFATTEIRKIPITVLSRCQ-RFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIAR  214 (369)
Q Consensus       138 ~fil~t~~~~~ll~TI~SRcq-~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~  214 (369)
                      .+|-+||....|..+.|+|.- +++|...+.+++.+.+.+.+..-+++++++++..||+.|.|.+|-|..+|.++.-|
T Consensus       152 TLIGATTr~g~Ls~PLrdRFGi~~~l~~Y~~eeL~~Ii~rsa~~l~i~i~~~~~~eIA~rSRGTPRiAnrLLrRvrDf  229 (328)
T PRK00080        152 TLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGIEIDEEGALEIARRSRGTPRIANRLLRRVRDF  229 (328)
T ss_pred             EEEECCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             474013676657767897579336634589999999999999983988789999999986389839999999999999


No 66 
>PRK04132 replication factor C small subunit; Provisional
Probab=99.74  E-value=2e-18  Score=156.03  Aligned_cols=133  Identities=29%  Similarity=0.449  Sum_probs=111.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      ||||+|||+.|++.|+.+-+|| +||+||||+||||.|.++|+.|..++...                       +++|+
T Consensus        27 IVgQehIVkRLK~YVk~~smPH-LLFaGPPGvGKt~~al~lar~l~ge~wr~-----------------------nflel   82 (863)
T PRK04132         27 IVGQDHIVKRLKHYVKTGSMPH-LLFAGPPGVGKTTAALALARELFGENWRH-----------------------NFLEL   82 (863)
T ss_pred             HCCHHHHHHHHHHHHCCCCCCC-EEECCCCCCCCHHHHHHHHHHHHCCHHHH-----------------------HHHHH
T ss_conf             2274999999998862388854-43048998771447888888761431455-----------------------56641


Q ss_pred             CCCCCCCHHHHHHHHHHH-HHHHH-CCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf             533223345556655544-56542-046523775115664800167899999721221114665067543303567543
Q 537021.9.peg.4   81 DAASHTSIDDVREIIDQI-YYKPI-SARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRC  157 (369)
Q Consensus        81 ~~~s~~~id~ir~l~~~~-~~~p~-~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRc  157 (369)
                      +|....+++.+|+..+.+ ..+|. .+++|++.+||.+.++.+++|++..++|+....+.||+-|..-..=+.|=..|-
T Consensus        83 nas~~~~~~~~~~~v~~~~~~~p~~~~~~k~~~~de~~~l~~d~~~~~r~~~e~~~~~~~~~~~~~t~~~ki~t~~~re  161 (863)
T PRK04132         83 NASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCLTGDAKIYTPDERE  161 (863)
T ss_pred             CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCE
T ss_conf             4421236348888777506866457865424644365640101157787667774212444333134651266035645


No 67 
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=99.69  E-value=1.4e-16  Score=142.37  Aligned_cols=174  Identities=25%  Similarity=0.296  Sum_probs=132.0

Q ss_pred             CCHHHHHHHHHHHHH-----CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf             284899999999998-----287670620107879888899999999961468777886658789997799997798778
Q 537021.9.peg.4    2 IGQKPMIKTLTNAFK-----SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVD   76 (369)
Q Consensus         2 iGq~~~~~~l~~~~~-----~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d   76 (369)
                      |||+++++.|+=+|+     +..+-| .||+||||.||||+|++.|..++-.-....+|..+                  
T Consensus         7 iGQ~~vk~~L~l~I~AAk~R~e~LDH-~LL~GPPGLGKTTLA~IiA~Emg~~l~iTsGP~L~------------------   67 (305)
T TIGR00635         7 IGQEKVKEQLQLFIEAAKMRQEALDH-LLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALE------------------   67 (305)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCC------------------
T ss_conf             58288999999999999824897341-66317568746789999999838932674067554------------------


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC----------CC--------CC
Q ss_conf             2224533223345556655544565420465237751156648001678999997212----------21--------11
Q 537021.9.peg.4   77 VVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP----------PH--------VK  138 (369)
Q Consensus        77 ~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp----------~~--------~~  138 (369)
                                   .-.||..=+.-- .+|+  |.+|||.|+|++.+=--|=--||.+-          ..        -.
T Consensus        68 -------------kPgDlaaiLt~L-~~gD--VLFIDEIHRL~p~~EE~LYpAMEDF~lDi~IG~Gp~Ar~v~ldLpPFT  131 (305)
T TIGR00635        68 -------------KPGDLAAILTNL-EEGD--VLFIDEIHRLSPAIEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFT  131 (305)
T ss_pred             -------------CHHHHHHHHHHC-CCCC--EEECCHHHHCCHHHHHHCCCCCCCEEEEEEEECCCCCCEEEECCCCCC
T ss_conf             -------------757899999705-6896--310125650483345310530012178778712898525760686944


Q ss_pred             EEEEECCCCCCCHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCC
Q ss_conf             4665067543303567543-33210245400135678764310134562566445653167642001100011
Q 537021.9.peg.4  139 FIFATTEIRKIPITVLSRC-QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQ  210 (369)
Q Consensus       139 fil~t~~~~~ll~TI~SRc-q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq  210 (369)
                      +|-+||.+.+|-.+.+||- -..+|.--+++|+.+-+++-+..=+++++++++..||+.|.|-+|-|..+|=+
T Consensus       132 LvGATTR~G~lt~PLrdRFG~~~rl~fY~~~EL~~Iv~R~A~~L~~ei~~~~a~~IArrSRGTPRIAnRLLRR  204 (305)
T TIGR00635       132 LVGATTRAGMLTSPLRDRFGIILRLEFYTPEELAEIVSRSAGLLNIEIEQEAALEIARRSRGTPRIANRLLRR  204 (305)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             2000034774103133454474540268987899998753344143007789999987547863788877676


No 68 
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=99.61  E-value=1.1e-15  Score=135.81  Aligned_cols=76  Identities=29%  Similarity=0.406  Sum_probs=67.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf             2233455566555445654204652377511566480016789999972122111466506754330356754333210
Q 537021.9.peg.4   84 SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDL  162 (369)
Q Consensus        84 s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f  162 (369)
                      ...+||+.|++++.+..+..  ..||+|+ .|+.||.+|||||||+|||||.+|+|||+|.+++.++|||+||-...+.
T Consensus        34 ~Ef~ie~Akevi~eayIae~--~~k~ii~-~A~~~n~~a~NaLLK~lEEPp~~~~fili~~~~~~lLpTI~SRl~i~~~  109 (204)
T PRK08485         34 DDFKIEDAKEVIAEAYIAES--EEKIIVI-AAPSYGIEAQNALLKILEEPPKNIKFIIVAKSKNLLLPTIRSRLIIEDR  109 (204)
T ss_pred             CCCCHHHHHHHHHHHHHCCC--CCEEEEE-EHHHHCHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf             21345779999999866036--8629997-1575269999999987417998807999868877747899988999977


No 69 
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.57  E-value=6.2e-14  Score=122.93  Aligned_cols=175  Identities=29%  Similarity=0.319  Sum_probs=131.6

Q ss_pred             CCHHHHHHHHHHHHH-----CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf             284899999999998-----287670620107879888899999999961468777886658789997799997798778
Q 537021.9.peg.4    2 IGQKPMIKTLTNAFK-----SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVD   76 (369)
Q Consensus         2 iGq~~~~~~l~~~~~-----~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d   76 (369)
                      |||+++++.|+=+++     ...+-| .||+||||.||||+|.+.|..++-.-....+|..+                  
T Consensus        29 iGQ~~vk~~L~ifI~AAk~r~e~lDH-vLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le------------------   89 (332)
T COG2255          29 IGQEKVKEQLQIFIKAAKKRGEALDH-VLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE------------------   89 (332)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCCC------------------
T ss_conf             18399999999999999844987674-78647998768889999999856773763662015------------------


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCC------------------CC
Q ss_conf             222453322334555665554456542046523775115664800167899999721221------------------11
Q 537021.9.peg.4   77 VVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPH------------------VK  138 (369)
Q Consensus        77 ~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~------------------~~  138 (369)
                                +--++-.++.+  +    ...-|.+|||.|+|+...---|--.||.+--.                  -.
T Consensus        90 ----------K~gDlaaiLt~--L----e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT  153 (332)
T COG2255          90 ----------KPGDLAAILTN--L----EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT  153 (332)
T ss_pred             ----------CHHHHHHHHHC--C----CCCCEEEEEHHHHCCHHHHHHHHHHHHHEEEEEEECCCCCCCEEECCCCCEE
T ss_conf             ----------72659999863--9----8677677725531474289896467531057789724875534763799813


Q ss_pred             EEEEECCCCCCCHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCC
Q ss_conf             4665067543303567543-332102454001356787643101345625664456531676420011000111
Q 537021.9.peg.4  139 FIFATTEIRKIPITVLSRC-QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQA  211 (369)
Q Consensus       139 fil~t~~~~~ll~TI~SRc-q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~  211 (369)
                      +|-+||....|..+.|.|. ...++.-.+++++...+.+-+..-++++++++...||+.|.|-+|-|..+|-++
T Consensus       154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRV  227 (332)
T COG2255         154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRV  227 (332)
T ss_pred             EEEECCCCCCCCCHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             75101346645633688628604540588899999999888873877685799999986369938999999999


No 70 
>CHL00181 cbbX CbbX; Provisional
Probab=99.56  E-value=1.5e-14  Score=127.46  Aligned_cols=164  Identities=22%  Similarity=0.333  Sum_probs=115.1

Q ss_pred             CCCHHHHHHHHHH---HHHCC-----------CC-CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
Q ss_conf             9284899999999---99828-----------76-706201078798888999999999614687778866587899977
Q 537021.9.peg.4    1 MIGQKPMIKTLTN---AFKSG-----------RI-AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEH   65 (369)
Q Consensus         1 iiGq~~~~~~l~~---~~~~~-----------~~-~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~   65 (369)
                      +||.+.+++.++.   .++-+           .. .| ++|.||||+||||+||++|+.|. .-           |-.  
T Consensus        25 liGL~~VK~~v~~l~~~~~~~~~R~~~Gl~~~~~s~h-~vF~GnPGTGKTTVARl~a~il~-~l-----------G~L--   89 (287)
T CHL00181         25 LIGLVPVKTRIREIAALLLVDRLRKNLGLVSSSPGLH-MSFTGSPGTGKTTVALKMADILY-RL-----------GYI--   89 (287)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE-EEEECCCCCCHHHHHHHHHHHHH-HC-----------CCC--
T ss_conf             4696999999999999999999999879998887653-88878998679999999999999-86-----------995--


Q ss_pred             HHHHHCCCCCCCCCCCCCCC----CC--HHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC---------CCHHHHHHHHH
Q ss_conf             99997798778222453322----33--45556655544565420465237751156648---------00167899999
Q 537021.9.peg.4   66 CQAIIRGNHVDVVELDAASH----TS--IDDVREIIDQIYYKPISARFRVYIMDEVQMLS---------TAAFNGLLKTL  130 (369)
Q Consensus        66 c~~i~~~~~~d~~e~~~~s~----~~--id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~---------~~a~NaLLK~l  130 (369)
                             +..+++|.+.+.=    +|  ....+++++.       +.-.|.+||||+.|.         .+|-+.|+|.|
T Consensus        90 -------~~g~vve~~r~dLvg~yvG~Ta~kt~~~i~~-------a~GGVLfIDEAY~L~~~~~~~dfg~eaidtLl~~m  155 (287)
T CHL00181         90 -------KKGHLITVTRDDLVGQYIGHTAPKTKEVLKK-------AMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVM  155 (287)
T ss_pred             -------CCCEEEEECHHHHCCCCCCCCHHHHHHHHHH-------CCCCEEEEECHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf             -------5895899535884163535216999999996-------45987998244653578899983799999999998


Q ss_pred             HHCCCCCCEEEEECC--CCCCC---HHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             721221114665067--54330---35675433-32102454001356787643101345625664456
Q 537021.9.peg.4  131 EEPPPHVKFIFATTE--IRKIP---ITVLSRCQ-RFDLHRISIGDLIELFTKILQEESIEFDPEAVAMI  193 (369)
Q Consensus       131 EEPp~~~~fil~t~~--~~~ll---~TI~SRcq-~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~i  193 (369)
                      |.+....++|++.-.  -+.++   |-++||-- .+.|...+++++.+.+...+.+.++.+++++...+
T Consensus       156 e~~~~~lvvI~AGY~~eM~~fl~~NpGL~sRf~~~i~F~dYt~~EL~~I~~~~~~~~~~~l~~~a~~~l  224 (287)
T CHL00181        156 ENQRDDLVVIFAGYKDRMDKFYESNPGLSSRVANHVDFPDYTPEELLQIAKMMLEEQQYQLTPEAEKVL  224 (287)
T ss_pred             HHCCCCEEEEEECCHHHHHHHHHHCCCHHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf             707998899984678999999985904787688723779859999999999999986982587999999


No 71 
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.53  E-value=1.7e-13  Score=119.74  Aligned_cols=218  Identities=19%  Similarity=0.237  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC--CCCCCC
Q ss_conf             999999999982876706201078798888999999999614687778866587899977999977987782--224533
Q 537021.9.peg.4    6 PMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV--VELDAA   83 (369)
Q Consensus         6 ~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~--~e~~~~   83 (369)
                      .+...|+.++..++-++ .+++||||+|||++++.+.+.+.-...... .+.--|....+-..+...-.-.+  ..+ +.
T Consensus        41 ~l~~~l~~~l~g~~~~n-~~I~G~pGTGKT~~vk~v~~~l~~~~~~~~-~vyINc~~~~t~~~i~~~i~~~L~~~~~-p~  117 (394)
T PRK00411         41 ELAFALRPALRGSRPSN-VLILGPPGTGKTTTVKKVFEELEEAALKVV-YVYINCQIDRTRYAILSEIARSLFGHPP-PS  117 (394)
T ss_pred             HHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHHHHHCCCCE-EEEEECCCCCCHHHHHHHHHHHHCCCCC-CC
T ss_conf             99999999975999984-799889999899999999999997468965-9999696689899999999999569989-87


Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC-CCHHHHH---HHHHHH-CCCCCCEEEEECC---CCCCCHHHHH
Q ss_conf             223345556655544565420465237751156648-0016789---999972-1221114665067---5433035675
Q 537021.9.peg.4   84 SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS-TAAFNGL---LKTLEE-PPPHVKFIFATTE---IRKIPITVLS  155 (369)
Q Consensus        84 s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~-~~a~NaL---LK~lEE-Pp~~~~fil~t~~---~~~ll~TI~S  155 (369)
                      ...+.+++.+.+.  .+-...+++=|+|+||+|.+- .++++-|   ++.-|+ |..++..|.++++   ++++.|-++|
T Consensus       118 ~G~s~~~~~~~l~--~~l~~~~~~~ivvLDEiD~L~~~~~~~vLY~L~r~~~~~~~~~~~vI~IsN~~~~~~~Ldprv~S  195 (394)
T PRK00411        118 SGLSFDELFDKIA--EYLDERDRVLIVALDDINYLVEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKS  195 (394)
T ss_pred             CCCCHHHHHHHHH--HHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHC
T ss_conf             7878999999999--98616697589999655402036650899999854022688738999997687177664077750


Q ss_pred             HHH--HHHCCCCCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHCCC---CCCCHHHHCCCCCCCHHH----CCCCHHH
Q ss_conf             433--3210245400135678764310---134562566445653167---642001100011100000----0121032
Q 537021.9.peg.4  156 RCQ--RFDLHRISIGDLIELFTKILQE---ESIEFDPEAVAMIARASD---GSARDGLSLLDQAIARCN----DKIVTSS  223 (369)
Q Consensus       156 Rcq--~~~f~~l~~~~i~~~L~~i~~~---E~i~~d~~~l~~ia~~s~---GslR~Al~lLeq~i~~~~----~~i~~e~  223 (369)
                      |++  .+.|.|-+.+|+.+-|..-++.   +| -+++++++++|..+.   |++|+|+.+|-++.-.++    +.++.++
T Consensus       196 ~l~~~~i~F~PY~~~qL~~IL~~R~~~af~~g-v~~~~~i~~~A~~~a~~~GDaR~Aldllr~A~e~Ae~~g~~~Vt~~h  274 (394)
T PRK00411        196 VFGPEEIVFPPYTADEIFDILKDRVEEGFYPG-VVSDEVLELIADLTGREHGDARVAIDLLRRAGEIAEREGSRKVTEED  274 (394)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf             27862898589998999999999998414556-78978999999998550475899999999999999971899658999


Q ss_pred             HHHCCC
Q ss_conf             200013
Q 537021.9.peg.4  224 VRLMLA  229 (369)
Q Consensus       224 v~~llg  229 (369)
                      |.....
T Consensus       275 V~~A~~  280 (394)
T PRK00411        275 VRKAYE  280 (394)
T ss_pred             HHHHHH
T ss_conf             999999


No 72 
>KOG1969 consensus
Probab=99.53  E-value=1.8e-13  Score=119.46  Aligned_cols=168  Identities=22%  Similarity=0.312  Sum_probs=133.4

Q ss_pred             EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             06201078798888999999999614687778866587899977999977987782224533223345556655544565
Q 537021.9.peg.4   22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYK  101 (369)
Q Consensus        22 ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~  101 (369)
                      .-+|++||||.||||+|++.|+.-               |           .  -|+||+|........+++-++.+-+.
T Consensus       327 KilLL~GppGlGKTTLAHViAkqa---------------G-----------Y--sVvEINASDeRt~~~v~~kI~~avq~  378 (877)
T KOG1969         327 KILLLCGPPGLGKTTLAHVIAKQA---------------G-----------Y--SVVEINASDERTAPMVKEKIENAVQN  378 (877)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHC---------------C-----------C--EEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf             068753688787247999999862---------------8-----------5--48873255543478899999998864


Q ss_pred             -H---HCCCCCEEEEECHHHCCCCHHHHHHHHHH--H----CCCC--------------C-CEEEEECCCC-CCCHHHHH
Q ss_conf             -4---20465237751156648001678999997--2----1221--------------1-1466506754-33035675
Q 537021.9.peg.4  102 -P---ISARFRVYIMDEVQMLSTAAFNGLLKTLE--E----PPPH--------------V-KFIFATTEIR-KIPITVLS  155 (369)
Q Consensus       102 -p---~~~~~kv~iid~a~~m~~~a~NaLLK~lE--E----Pp~~--------------~-~fil~t~~~~-~ll~TI~S  155 (369)
                       +   ..++.+-.||||.|.=-..|-+++|+.++  +    .++.              + -+|-+|++.. -=|-.++-
T Consensus       379 ~s~l~adsrP~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~  458 (877)
T KOG1969         379 HSVLDADSRPVCLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRP  458 (877)
T ss_pred             CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCHHHHHCCC
T ss_conf             11225688863599842468728999999999974161421686632034555304654587789864755533331021


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCC
Q ss_conf             433321024540013567876431013456256644565316764200110001110000001
Q 537021.9.peg.4  156 RCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDK  218 (369)
Q Consensus       156 Rcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~  218 (369)
                      =|+.+.|+++++..++++|..||..||+..+..+|..+..++++++|-.+|.| |.++...+.
T Consensus       459 ~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~DIRsCINtL-QfLa~~~~r  520 (877)
T KOG1969         459 FAEIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQNDIRSCINTL-QFLASNVDR  520 (877)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHH-HHHHHHCCC
T ss_conf             04899956997668999999997641577887899999998613098888899-999970444


No 73 
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=99.51  E-value=5.6e-13  Score=115.90  Aligned_cols=197  Identities=15%  Similarity=0.200  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC-C
Q ss_conf             999999999982876706201078798888999999999614687778866587899977999977987782224533-2
Q 537021.9.peg.4    6 PMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA-S   84 (369)
Q Consensus         6 ~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~-s   84 (369)
                      .|.+-|+..+...+-.+-+|++||+|+||||+.+.+|+.|.|+--.+..|... -+.-..|+      ..|+...... +
T Consensus        30 eV~~WL~~~~~~~~~~~iLlLtGPaG~GKTTTI~lLAkeLG~ei~EW~NP~~~-~~~~~~~q------~~d~~g~~~~~~  102 (490)
T pfam03215        30 EVDHWLKAVFLESNKQLILLLTGPSGCGKSTTVKVLSKELGIEIIEWSNPEYL-HNPDNECQ------KPDFRGDCIVNS  102 (490)
T ss_pred             HHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCC-CCCCCHHH------CCCCCCCCCCCC
T ss_conf             99999999854777731899879899889999999999759689981486545-67750221------012123457666


Q ss_pred             CCCHHHHHHHHHHH-HH---HHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC-----CCCCCEEEEE-------CCCC-
Q ss_conf             23345556655544-56---542046523775115664800167899999721-----2211146650-------6754-
Q 537021.9.peg.4   85 HTSIDDVREIIDQI-YY---KPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP-----PPHVKFIFAT-------TEIR-  147 (369)
Q Consensus        85 ~~~id~ir~l~~~~-~~---~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP-----p~~~~fil~t-------~~~~-  147 (369)
                      ....++-.+..... .|   .....+.||++|||.-.+.....-+|...|-+.     +..++||+.=       ++.. 
T Consensus       103 ~S~~~~F~eFLlr~~ky~sL~~~~~~kriILIEE~Pn~~~~d~~~fr~~L~~~L~s~~~~PlV~IiSEt~s~~g~~~~~~  182 (490)
T pfam03215       103 LSQMEQFREFLLRGARYGSLQGGGLKKKLILVEELPNQFYSDAEKFREVIREVLQSIWHLPLIFCLTECNSLEGDNNQDR  182 (490)
T ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCC
T ss_conf             63777767887622335654457887359999658874423669999999999970899987999970466667764332


Q ss_pred             -------CCCHHHHHHHH--HHHCCCCCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHCCCCCCCHHHHCCC
Q ss_conf             -------33035675433--32102454001356787643101345---6256644565316764200110001
Q 537021.9.peg.4  148 -------KIPITVLSRCQ--RFDLHRISIGDLIELFTKILQEESIE---FDPEAVAMIARASDGSARDGLSLLD  209 (369)
Q Consensus       148 -------~ll~TI~SRcq--~~~f~~l~~~~i~~~L~~i~~~E~i~---~d~~~l~~ia~~s~GslR~Al~lLe  209 (369)
                             -+.|.|+--|.  ++.|.|+.+..|.+.|..|+.+|+..   .....++.|++.|+|++|-|++-|+
T Consensus       183 ~~~ta~rLlg~eIl~hp~i~~I~FNpIApT~M~KaL~~I~~kE~~~~~~~~~~~le~Ia~~S~GDIRsAInsLQ  256 (490)
T pfam03215       183 FGIDAETIMTKDILIMPRIDTITFNPIAPTFMKKALVRISVQEGKLKSPKSDSKLEVICQEAGGDLRSAINSLQ  256 (490)
T ss_pred             CCCHHHHHCCHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             32107863598887088963698688878899999999999857655675203899999864872999999999


No 74 
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=99.48  E-value=6.8e-13  Score=115.25  Aligned_cols=102  Identities=27%  Similarity=0.374  Sum_probs=91.6

Q ss_pred             CCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEEC------------CCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             52377511566480016789999972122111466506------------754330356754333210245400135678
Q 537021.9.peg.4  107 FRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATT------------EIRKIPITVLSRCQRFDLHRISIGDLIELF  174 (369)
Q Consensus       107 ~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~------------~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L  174 (369)
                      +=|.+|||+|||..+++--|=|.||.+-.. ++||+||            .|+-+|.-.+.||.+++-.|.+.++|.+.|
T Consensus       276 pGVLFIDEvHMLDiEcFsfLnralEs~laP-ivI~ATNRG~~~IRGTd~~sPHGiP~DlLDRllII~T~py~~~ei~~Ii  354 (395)
T pfam06068       276 PGVLFIDEVHMLDIECFSFLNRALESELAP-IVILATNRGICTIRGTDIISPHGIPLDLLDRLLIITTEPYTREEIKQIL  354 (395)
T ss_pred             CCCEEEECCHHCCHHHHHHHHHHHCCCCCC-EEEEEECCCCEEECCCCCCCCCCCCHHHHHHEEEEECCCCCHHHHHHHH
T ss_conf             274688500000058998887765056787-6999844652035256775888998777730258856889989999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHCC-CCCCCHHHHCCC
Q ss_conf             76431013456256644565316-764200110001
Q 537021.9.peg.4  175 TKILQEESIEFDPEAVAMIARAS-DGSARDGLSLLD  209 (369)
Q Consensus       175 ~~i~~~E~i~~d~~~l~~ia~~s-~GslR~Al~lLe  209 (369)
                      +--++.|+++++++++++++..+ +-|+|-|++++.
T Consensus       355 ~iRa~~E~v~l~~~al~~L~~ig~~~SLRYaiqLlt  390 (395)
T pfam06068       355 EIRAQEEGVEISEEALDLLAKIGEETSLRYAIQLLT  390 (395)
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHC
T ss_conf             987776078779899999998653202999998725


No 75 
>TIGR01128 holA DNA polymerase III, delta subunit; InterPro: IPR005790    DNA polymerase III delta (holA, ) and delta prime (holB) subunits are distinct proteins encoded by separate genes. The delta prime subunit (holB) exhibits sequence homology to the tau and gamma subunits (dnaX), but the delta subunit (holA) does not demonstrate this same homology with dnaX. The delta, delta prime, gamma, chi and psi subunits form the gamma complex sub-assembly of DNA polymerase III holoenzyme, which couples ATP to assemble the ring-shaped beta subunit around DNA forming a DNA sliding clamp. Both delta and delta prime are monomeric in their native state, and they bind each other tightly to form a 1:1 complex. Neither delta nor delta prime alone binds tightly to the gamma subunit . ; GO: 0003677 DNA binding, 0003891 delta DNA polymerase activity, 0006260 DNA replication, 0043625 delta DNA polymerase complex.
Probab=99.39  E-value=1.8e-10  Score=97.29  Aligned_cols=299  Identities=18%  Similarity=0.233  Sum_probs=240.8

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             70620107879888899999999961468777886658789997799997798778222453322334555665554456
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYY  100 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~  100 (369)
                      +..|+++|+.-.-....+..+.+... ..... .                     ++..+++    .--+.-.+.....-
T Consensus         2 ~~~y~~~G~~~~l~~~~~~~~~~~~~-~~~~~-~---------------------~~~~~~~----~~~~~~~~~~~~~~   54 (331)
T TIGR01128         2 APVYLLYGDEPLLLEEAADAIRAAAL-PGFDE-F---------------------NLFTIDG----EEFDWGQLLESAQT   54 (331)
T ss_pred             CCCEEECCCCHHHHHHHHHHHHHHHC-CCCHH-H---------------------HHHHCCC----CCCHHHHHHHHHHH
T ss_conf             64035406405578999999998740-24201-2---------------------2321033----20037788877641


Q ss_pred             HHHCCCCCEEEEECHHHC-CCCH-----HHHHHHHHHHCCCCCCEEEEEC--CCC------CCCH-HHHH-HHHHHHCCC
Q ss_conf             542046523775115664-8001-----6789999972122111466506--754------3303-5675-433321024
Q 537021.9.peg.4  101 KPISARFRVYIMDEVQML-STAA-----FNGLLKTLEEPPPHVKFIFATT--EIR------KIPI-TVLS-RCQRFDLHR  164 (369)
Q Consensus       101 ~p~~~~~kv~iid~a~~m-~~~a-----~NaLLK~lEEPp~~~~fil~t~--~~~------~ll~-TI~S-Rcq~~~f~~  164 (369)
                      .|..+.++++++..+... +...     ..+|.+.++.||+.++.++.+.  ..+      +... +... ....+.+.+
T Consensus        55 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (331)
T TIGR01128        55 LPLFSERRLVELRLPSGLPGAKGKLEHLLKALLEYLANPPPDTLLLIEAPYEKLDKRKKLTKWLKKALDNKNAEIVECKT  134 (331)
T ss_pred             CCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEECCC
T ss_conf             35544440566533334344100256679999987314676537887416301345677776766654321012310234


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHH-CC-CCHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             5400135678764310134562566445653167642001100011100000-01-210322000135677777888876
Q 537021.9.peg.4  165 ISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCN-DK-IVTSSVRLMLALADRNRIMDLFGY  242 (369)
Q Consensus       165 l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~-~~-i~~e~v~~llg~~~~~~i~~Ll~a  242 (369)
                      +...++..|....+...|..++.++..+++...+|+.+.+-..++++..+.. .. ++.+++...++...+..++++.++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~kl~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~a  214 (331)
T TIGR01128       135 PDEQELPRWIQARLKELGLRIDPDAVQLLAELVEGNLLALAQELEKLALLAPDGEPITLEDVEEAVSDSARFNVFDLTDA  214 (331)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             43556689999999970786545899999987253078888777777752378766688999988533114667889998


Q ss_pred             HHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC----------CCCC-CCHHHHHHHHHHHHHCCH
Q ss_conf             30136334678876543047621357877753489999997457412----------2344-998899999999862998
Q 537021.9.peg.4  243 LIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMA----------DTLL-YSEAENARALQYSKEVSI  311 (369)
Q Consensus       243 i~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~----------~~~~-~~~~e~~~i~~~a~~i~~  311 (369)
                      +..++...+...+..+...|.+|..++..+...+|.+...+......          .... +++.....+....++++.
T Consensus       215 ~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (331)
T TIGR01128       215 LLEGKAARALRILDGLLGEGEEPLILLALLQRQLRLLLQLKILAQAGLTGKPLAQLASKLGPIWPYRRKLALKALRRLSL  294 (331)
T ss_pred             HHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCH
T ss_conf             86043899999999887404115789999999999999988877630022108899987336550356778999850577


Q ss_pred             HHHHHHHHHHHHHHHHHH-CC-CCHHHHHHHHHHHHH
Q ss_conf             999999999999999830-27-888999999999995
Q 537021.9.peg.4  312 TFLSRFWQMILKGISEIE-GF-SRPMEAVEMVLIRLA  346 (369)
Q Consensus       312 ~~L~~~lq~l~~a~~~Lk-~n-~np~L~lE~lLlkL~  346 (369)
                      ..+.+.++.+.+++..++ .+ .++...+|.++++++
T Consensus       295 ~~l~~~~~~l~~~~~~~k~~~~~~~~~~l~~l~~~~~  331 (331)
T TIGR01128       295 AKLEQALQELAEADLQLKGTGLGDPWLELELLLLKLA  331 (331)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
T ss_conf             8899999999998998502456525789999876309


No 76 
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.35  E-value=1.1e-11  Score=106.22  Aligned_cols=131  Identities=28%  Similarity=0.348  Sum_probs=91.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
Q ss_conf             28489999999999828767062010787988889999999996146877788665878999779999779877822245
Q 537021.9.peg.4    2 IGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELD   81 (369)
Q Consensus         2 iGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~   81 (369)
                      .||+.....+...+......| +||+||||+|||++|+.+|+.+.....                         .+++++
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~-ill~GppGtGKT~la~~ia~~~~~~~~-------------------------~~~~~~   54 (151)
T cd00009           1 VGQEEAIEALREALELPPPKN-LLLYGPPGTGKTTLARAIANELFRPGA-------------------------PFLYLN   54 (151)
T ss_pred             CCCHHHHHHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCC-------------------------CEEEEE
T ss_conf             985799999999981879980-899899998865999999997121379-------------------------827854


Q ss_pred             CCCCCC---HHHHHH--HHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC------CCCCEEEEECCCC--C
Q ss_conf             332233---455566--55544565420465237751156648001678999997212------2111466506754--3
Q 537021.9.peg.4   82 AASHTS---IDDVRE--IIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP------PHVKFIFATTEIR--K  148 (369)
Q Consensus        82 ~~s~~~---id~ir~--l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp------~~~~fil~t~~~~--~  148 (369)
                      ..+-.+   ++..+.  ...........+++.|++|||+|.|+...++.+++.+++..      .++.+|++|+.+.  .
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~l~~~~~~~~~~~~~~vI~~tn~~~~~~  134 (151)
T cd00009          55 ASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGD  134 (151)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCC
T ss_conf             77704677775760577889899999976998698201665599999999999987157540678889999528998868


Q ss_pred             CCHHHHHHHH
Q ss_conf             3035675433
Q 537021.9.peg.4  149 IPITVLSRCQ  158 (369)
Q Consensus       149 ll~TI~SRcq  158 (369)
                      +.+.+.+||.
T Consensus       135 ~~~~~~~R~~  144 (151)
T cd00009         135 LDRALYDRLD  144 (151)
T ss_pred             HHHHHHCCCC
T ss_conf             3776425598


No 77 
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.34  E-value=2.2e-11  Score=104.15  Aligned_cols=203  Identities=18%  Similarity=0.179  Sum_probs=134.8

Q ss_pred             CHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CHHHHHHHCCCCCCCCCCC
Q ss_conf             848999999999982876706201078798888999999999614687778866587899-9779999779877822245
Q 537021.9.peg.4    3 GQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGF-GEHCQAIIRGNHVDVVELD   81 (369)
Q Consensus         3 Gq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~-c~~c~~i~~~~~~d~~e~~   81 (369)
                      +|+.+...|.-.+..++ +- -+++|++|+||||+.|.|++.|......... ...+..+ -+-.+.|...=     -++
T Consensus        27 ~h~~al~~L~~~l~~~~-g~-~lltGe~GtGKTtllr~l~~~l~~~~~~~~~-i~~~~l~~~~ll~~i~~~l-----g~~   98 (269)
T TIGR03015        27 GHKRAMAYLEYGLSQRE-GF-ILITGEVGAGKTTLIRNLLKRLDQERVVAAK-LVNTRVDAEDLLRMVAADF-----GLE   98 (269)
T ss_pred             HHHHHHHHHHHHHHCCC-CE-EEEECCCCCCHHHHHHHHHHHCCCCCEEEEE-ECCCCCCHHHHHHHHHHHC-----CCC
T ss_conf             69999999999996489-65-9997299898899999999845934548999-7699999999999999985-----989


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHH--HHHCCCCCCEEEEECCCC---CC----CHH
Q ss_conf             332233455566555445654204652377511566480016789999--972122111466506754---33----035
Q 537021.9.peg.4   82 AASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKT--LEEPPPHVKFIFATTEIR---KI----PIT  152 (369)
Q Consensus        82 ~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~--lEEPp~~~~fil~t~~~~---~l----l~T  152 (369)
                      ..+..+.+-.|.+.+.+.-.-..|+.-|+||||||.|+.++-+.|.-.  +|-...+.+.++.+-+|+   +|    ++.
T Consensus        99 ~~~~~~~~~~~~l~~~L~~~~~~g~~~vliIDEAq~L~~~~Le~Lr~L~n~e~~~~~ll~iiL~GqpeL~~~L~~~~~~~  178 (269)
T TIGR03015        99 TEGRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQ  178 (269)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHCCCCHHH
T ss_conf             88989999999999999999966994699972422199999999999970135888704899957867999872740254


Q ss_pred             HHHHH-HHHHCCCCCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHCCCCCCCHHHHCCCCCCC
Q ss_conf             67543-33210245400135678764310134----562566445653167642001100011100
Q 537021.9.peg.4  153 VLSRC-QRFDLHRISIGDLIELFTKILQEESI----EFDPEAVAMIARASDGSARDGLSLLDQAIA  213 (369)
Q Consensus       153 I~SRc-q~~~f~~l~~~~i~~~L~~i~~~E~i----~~d~~~l~~ia~~s~GslR~Al~lLeq~i~  213 (369)
                      +.+|- .++.+.|++.++...|+..-+..-|.    -+++++++.|.+.|+|.+|.--.+-++++.
T Consensus       179 l~qRI~~~~~L~pl~~eet~~YI~~RL~~AG~~~~~~Ft~~A~~~I~~~S~G~PR~IN~Lc~~aLl  244 (269)
T TIGR03015       179 LRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLL  244 (269)
T ss_pred             HHHCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             555076799847999899999999999866999999859999999999869900899999999999


No 78 
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.29  E-value=1.4e-11  Score=105.56  Aligned_cols=184  Identities=20%  Similarity=0.280  Sum_probs=126.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC----
Q ss_conf             9284899999999998287670620107879888899999999961468777886658789997799997798778----
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVD----   76 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d----   76 (369)
                      |||-+.=++.+-..+.+.+=++ -++.|+||+|||+++..||+.+.                        .|.-|+    
T Consensus       180 vIGRd~EI~r~i~IL~RR~KNN-piLvGepGVGKTAIvEGLA~rI~------------------------~g~VP~~L~~  234 (857)
T PRK10865        180 VIGRDEEIRRTIQVLQRRTKNN-PVLIGEPGVGKTAIVEGLAQRII------------------------NGEVPEGLKG  234 (857)
T ss_pred             CCCCHHHHHHHHHHHHCCCCCC-CEEECCCCCCHHHHHHHHHHHHH------------------------CCCCCHHHCC
T ss_conf             8582999999999970257899-75878999889999999999998------------------------3899978816


Q ss_pred             --CCCCC------CCCCCC-H-HHHHHHHHHHHHHHHCCCCCEEEEECHHHC--------CCCHHHHHHHHHHHCCCCCC
Q ss_conf             --22245------332233-4-555665554456542046523775115664--------80016789999972122111
Q 537021.9.peg.4   77 --VVELD------AASHTS-I-DDVREIIDQIYYKPISARFRVYIMDEVQML--------STAAFNGLLKTLEEPPPHVK  138 (369)
Q Consensus        77 --~~e~~------~~s~~~-i-d~ir~l~~~~~~~p~~~~~kv~iid~a~~m--------~~~a~NaLLK~lEEPp~~~~  138 (369)
                        ++.+|      |++-.| . +.++.+++.+...+   +.-|.+|||+|++        +.+|+|-|--.|-.  ....
T Consensus       235 ~~I~~LDlg~L~AGakyRGeFEeRLk~il~ev~~~~---~~iILFIDEiHtlvGaG~~~G~~DaaNlLKPaLaR--Gelr  309 (857)
T PRK10865        235 RRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQE---GNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELH  309 (857)
T ss_pred             CCEEEEEHHHHHHCCCCCHHHHHHHHHHHHHHHHCC---CCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHHC--CCCE
T ss_conf             902473388786147652117999999999998478---98699973435433688777753478886788737--9854


Q ss_pred             EEEEECCC--CCCCH---HHHHHHHHHHCCCCCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHCCCC------CCCH
Q ss_conf             46650675--43303---5675433321024540013567876431----01345625664456531676------4200
Q 537021.9.peg.4  139 FIFATTEI--RKIPI---TVLSRCQRFDLHRISIGDLIELFTKILQ----EESIEFDPEAVAMIARASDG------SARD  203 (369)
Q Consensus       139 fil~t~~~--~~ll~---TI~SRcq~~~f~~l~~~~i~~~L~~i~~----~E~i~~d~~~l~~ia~~s~G------slR~  203 (369)
                      +|-+||.-  .+.++   .+--|.|.+....++.++....|+.+..    .+++.|+++++...+.+|.=      =+.+
T Consensus       310 ~IGATT~~EYrk~iEkD~AL~RRFq~V~V~EPs~e~ti~ILrgl~~~yE~hH~V~itdeAl~aAV~LS~RYI~dR~LPDK  389 (857)
T PRK10865        310 CVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDK  389 (857)
T ss_pred             EEEECCHHHHHHHCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf             99945899999871345889985371006899879999999988889987379158799999999986245666678148


Q ss_pred             HHHCCCCCCCH
Q ss_conf             11000111000
Q 537021.9.peg.4  204 GLSLLDQAIAR  214 (369)
Q Consensus       204 Al~lLeq~i~~  214 (369)
                      |+.+||.+.+.
T Consensus       390 AIDLLDeA~A~  400 (857)
T PRK10865        390 AIDLIDEAASS  400 (857)
T ss_pred             HHHHHHHHHHH
T ss_conf             98899999888


No 79 
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815   Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases .   Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=99.29  E-value=5.3e-12  Score=108.67  Aligned_cols=154  Identities=23%  Similarity=0.402  Sum_probs=106.5

Q ss_pred             CE-EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC--HHHH-HHHHH
Q ss_conf             70-62010787988889999999996146877788665878999779999779877822245332233--4555-66555
Q 537021.9.peg.4   21 AQ-SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTS--IDDV-REIID   96 (369)
Q Consensus        21 ~h-a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~--id~i-r~l~~   96 (369)
                      +. -+-|+||||+||||+|+-.|+|||-.--                 +|+=|.--|+-||-|  |+.  |--+ =.++.
T Consensus       449 GpqIlClvGPPGVGKTSlg~SIA~ALnRkFv-----------------R~SlGG~~DeAEIrG--HRRTYvGAMPGriiQ  509 (941)
T TIGR00763       449 GPQILCLVGPPGVGKTSLGKSIAKALNRKFV-----------------RFSLGGVRDEAEIRG--HRRTYVGAMPGRIIQ  509 (941)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHCCEEE-----------------EEEECCCEEHHHCCC--CCCCCCCCCHHHHHH
T ss_conf             8767872072695422278999999688049-----------------995267220311278--643203467257899


Q ss_pred             HHHHHHHCCCCCEEEEECHHHCC--CCH----HHHHHHHHHHCCCC----------------CC--EEEEECCCCCCCHH
Q ss_conf             44565420465237751156648--001----67899999721221----------------11--46650675433035
Q 537021.9.peg.4   97 QIYYKPISARFRVYIMDEVQMLS--TAA----FNGLLKTLEEPPPH----------------VK--FIFATTEIRKIPIT  152 (369)
Q Consensus        97 ~~~~~p~~~~~kv~iid~a~~m~--~~a----~NaLLK~lEEPp~~----------------~~--fil~t~~~~~ll~T  152 (369)
                      -+....+.-+  ||+|||.|+|.  .+-    |-|||=.|. |-.|                |+  ||.++|+.+.||++
T Consensus       510 ~lk~~~t~NP--l~LlDEIDK~~~~~~~~GDPaSALLEvLD-PEQN~~F~DHYldvp~DLS~V~CyFi~TAN~~d~IP~P  586 (941)
T TIGR00763       510 GLKKAKTKNP--LILLDEIDKIGLKSSFRGDPASALLEVLD-PEQNNAFSDHYLDVPFDLSKVLCYFIATANSIDTIPRP  586 (941)
T ss_pred             HHHHCCCCCC--EEEEEEEEEECCCCCCCCCHHHHHHHHCC-HHHCCCCCCCCCCCCCCHHHHHHHEEECCCCCCCCCCC
T ss_conf             9876041588--06862022001678865563788864128-64360425530023400420021000244757677722


Q ss_pred             HHHHHHHHHCCCCCCHH---H-HHHHH-HH-----HHHCCCCCCHHHHHHHHHC
Q ss_conf             67543332102454001---3-56787-64-----3101345625664456531
Q 537021.9.peg.4  153 VLSRCQRFDLHRISIGD---L-IELFT-KI-----LQEESIEFDPEAVAMIARA  196 (369)
Q Consensus       153 I~SRcq~~~f~~l~~~~---i-~~~L~-~i-----~~~E~i~~d~~~l~~ia~~  196 (369)
                      ++=|.=+|.+.--+++|   | .+||- +.     +..++++++++++..|++.
T Consensus       587 LLDRMEvI~lsGY~~~EK~~IA~~yLiP~~~~~~GL~~~~l~~~d~al~~lI~~  640 (941)
T TIGR00763       587 LLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKISDEALLLLIKY  640 (941)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCEEECHHHHHHHHHH
T ss_conf             137402452388876789999985471367987088813221268999999987


No 80 
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.28  E-value=3.6e-11  Score=102.57  Aligned_cols=172  Identities=20%  Similarity=0.320  Sum_probs=118.9

Q ss_pred             CCCHHHHHHH---HHHHHH----CCC-CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf             9284899999---999998----287-67062010787988889999999996146877788665878999779999779
Q 537021.9.peg.4    1 MIGQKPMIKT---LTNAFK----SGR-IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRG   72 (369)
Q Consensus         1 iiGq~~~~~~---l~~~~~----~~~-~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~   72 (369)
                      ||||+.+++.   +.+.++    -|. .|...||+||+|+|||.+|+++|...+.       |..    ..++-..|  |
T Consensus       123 ViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv-------p~l----~vkat~li--G  189 (368)
T COG1223         123 VIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV-------PLL----LVKATELI--G  189 (368)
T ss_pred             HHCHHHHHHHHHHHHHHHHCHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC-------CEE----EECHHHHH--H
T ss_conf             4163988888799999964968763457541687789996487999987254578-------548----71168888--8


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC------------CCHHHHHHHHHHH--CCCCCC
Q ss_conf             87782224533223345556655544565420465237751156648------------0016789999972--122111
Q 537021.9.peg.4   73 NHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS------------TAAFNGLLKTLEE--PPPHVK  138 (369)
Q Consensus        73 ~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~------------~~a~NaLLK~lEE--Pp~~~~  138 (369)
                      -|.    =|     +-.+||++-+.++...    .-|++|||.|.+-            .+.-||||--|.-  --.+|+
T Consensus       190 ehV----Gd-----gar~Ihely~rA~~~a----PcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv  256 (368)
T COG1223         190 EHV----GD-----GARRIHELYERARKAA----PCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV  256 (368)
T ss_pred             HHH----HH-----HHHHHHHHHHHHHHCC----CEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEE
T ss_conf             774----35-----9899999999887519----8499840024555304578864549999999998501744577569


Q ss_pred             EEEEECCCCCCCHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
Q ss_conf             46650675433035675433-32102454001356787643101345625664456531676
Q 537021.9.peg.4  139 FIFATTEIRKIPITVLSRCQ-RFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDG  199 (369)
Q Consensus       139 fil~t~~~~~ll~TI~SRcq-~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~G  199 (369)
                      +|-+|++|+-|=|.||||.- -+.|+-++.++....|+..+++=-++++.. ++.++..+.|
T Consensus       257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g  317 (368)
T COG1223         257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKG  317 (368)
T ss_pred             EEEECCCHHHCCHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHCC
T ss_conf             995059846507888865565065648885899999999898589765568-9999998478


No 81 
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.28  E-value=1.1e-11  Score=106.21  Aligned_cols=183  Identities=23%  Similarity=0.298  Sum_probs=120.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC----
Q ss_conf             9284899999999998287670620107879888899999999961468777886658789997799997798778----
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVD----   76 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d----   76 (369)
                      |||-+.=++.+...+.+.+=.+ -++.|.||+|||+++..+|+.+.                        .|.-|+    
T Consensus       189 vIGRd~EI~r~iqIL~Rr~KNN-PiLVGepGVGKTAIvEGLA~rI~------------------------~g~VP~~L~~  243 (852)
T TIGR03345       189 VLGRDDEIRQMIDILLRRRQNN-PILTGEAGVGKTAVVEGLALRIA------------------------AGDVPPALRN  243 (852)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCC-CEEECCCCCCHHHHHHHHHHHHH------------------------CCCCCHHHHC
T ss_conf             8694999999999998624799-74657999879999999999997------------------------6999867743


Q ss_pred             --CCCCC------CCCCCC-HH-HHHHHHHHHHHHHHCCCCCEEEEECHHHC--------CCCHHHHHHHHHHHCCCCCC
Q ss_conf             --22245------332233-45-55665554456542046523775115664--------80016789999972122111
Q 537021.9.peg.4   77 --VVELD------AASHTS-ID-DVREIIDQIYYKPISARFRVYIMDEVQML--------STAAFNGLLKTLEEPPPHVK  138 (369)
Q Consensus        77 --~~e~~------~~s~~~-id-~ir~l~~~~~~~p~~~~~kv~iid~a~~m--------~~~a~NaLLK~lEEPp~~~~  138 (369)
                        ++.+|      |++-.| .+ .++.+++.+.-.+   +.=|.+|||.|++        +.+|+|-|=-.|-.  ....
T Consensus       244 ~~i~sLDlg~LvAGtkyRGeFEeRlk~ii~ei~~~~---~~iILFIDEiHtlvGAG~~~G~~DaaNiLKPaLar--Gelr  318 (852)
T TIGR03345       244 VRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASP---QPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELR  318 (852)
T ss_pred             CEEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHCC---CCEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHC--CCCE
T ss_conf             856786788886403576359999999999998489---97699963487752899888862278875178737--8734


Q ss_pred             EEEEECCCC--CCC---HHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHCCCCCC------CH
Q ss_conf             466506754--330---35675433321024540013567876431----0134562566445653167642------00
Q 537021.9.peg.4  139 FIFATTEIR--KIP---ITVLSRCQRFDLHRISIGDLIELFTKILQ----EESIEFDPEAVAMIARASDGSA------RD  203 (369)
Q Consensus       139 fil~t~~~~--~ll---~TI~SRcq~~~f~~l~~~~i~~~L~~i~~----~E~i~~d~~~l~~ia~~s~Gsl------R~  203 (369)
                      +|-+||.-+  +.+   +.+-=|.|.+....++.++...-|+.+..    .+++.|+++++...+.+|+-=+      .+
T Consensus       319 ~IGATT~~EYrk~iEkD~AL~RRFq~V~V~EPs~eeti~IL~glk~~yE~hH~V~i~d~Ai~aAv~LS~RYI~dR~LPDK  398 (852)
T TIGR03345       319 TIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDK  398 (852)
T ss_pred             EEEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf             99835789998886426889962475527999879999999987999855479687089999999998721554558427


Q ss_pred             HHHCCCCCCC
Q ss_conf             1100011100
Q 537021.9.peg.4  204 GLSLLDQAIA  213 (369)
Q Consensus       204 Al~lLeq~i~  213 (369)
                      |+.++|.+-+
T Consensus       399 AIDLlDeA~A  408 (852)
T TIGR03345       399 AVSLLDTACA  408 (852)
T ss_pred             HHHHHHHHHH
T ss_conf             8999999999


No 82 
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.27  E-value=8.8e-11  Score=99.67  Aligned_cols=118  Identities=27%  Similarity=0.360  Sum_probs=96.5

Q ss_pred             CCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEEC------------CCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             52377511566480016789999972122111466506------------754330356754333210245400135678
Q 537021.9.peg.4  107 FRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATT------------EIRKIPITVLSRCQRFDLHRISIGDLIELF  174 (369)
Q Consensus       107 ~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~------------~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L  174 (369)
                      .-|.+|||+|||-.++|--|-|.||++=.. +.||+||            .|+-+|.-..-|-.++.-+|.+.++|...+
T Consensus       292 pGVLFIDEvHmLDIE~FsFlnrAlEse~aP-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi  370 (450)
T COG1224         292 PGVLFIDEVHMLDIECFSFLNRALESELAP-IIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREII  370 (450)
T ss_pred             CCEEEEECHHHHHHHHHHHHHHHHHCCCCC-EEEEECCCCEEEECCCCCCCCCCCCHHHHHHEEEEECCCCCHHHHHHHH
T ss_conf             342897321345578999999876314675-7999717750012166776888898766622567744779889999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHCC-CCCCCHHHHCCCCC--CCH--HHCCCCHHHHH
Q ss_conf             76431013456256644565316-76420011000111--000--00012103220
Q 537021.9.peg.4  175 TKILQEESIEFDPEAVAMIARAS-DGSARDGLSLLDQA--IAR--CNDKIVTSSVR  225 (369)
Q Consensus       175 ~~i~~~E~i~~d~~~l~~ia~~s-~GslR~Al~lLeq~--i~~--~~~~i~~e~v~  225 (369)
                      +--+..|++.++++|++.++..+ .-|+|-|+++|.-+  ++.  .+..+..++|.
T Consensus       371 ~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe  426 (450)
T COG1224         371 RIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVE  426 (450)
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHCCCEEEHHHHH
T ss_conf             97643540304888999997515034489999861688899987179746566799


No 83 
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.26  E-value=2.8e-11  Score=103.35  Aligned_cols=182  Identities=24%  Similarity=0.315  Sum_probs=121.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC----
Q ss_conf             9284899999999998287670620107879888899999999961468777886658789997799997798778----
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVD----   76 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d----   76 (369)
                      |||-+.=++.+-..+.+.+-.+ -++.|+||+|||+++.-||+.+-                        .|.-|+    
T Consensus       181 vIGRd~EI~r~i~IL~RR~KNN-piLvGepGVGKTAIvEGLA~rI~------------------------~g~VP~~L~~  235 (823)
T CHL00095        181 VIGRDKEIERVIQILGRRTKNN-PILIGEPGVGKTAIAEGLAQRIA------------------------NRDVPDILED  235 (823)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCC-CEEECCCCCCHHHHHHHHHHHHH------------------------CCCCCHHHCC
T ss_conf             7595699999999997732488-50237999879999999999760------------------------8899868759


Q ss_pred             --CCCCC------CCCCCC-H-HHHHHHHHHHHHHHHCCCCCEEEEECHHHC--------CCCHHHHHHHHHHHCCCCCC
Q ss_conf             --22245------332233-4-555665554456542046523775115664--------80016789999972122111
Q 537021.9.peg.4   77 --VVELD------AASHTS-I-DDVREIIDQIYYKPISARFRVYIMDEVQML--------STAAFNGLLKTLEEPPPHVK  138 (369)
Q Consensus        77 --~~e~~------~~s~~~-i-d~ir~l~~~~~~~p~~~~~kv~iid~a~~m--------~~~a~NaLLK~lEEPp~~~~  138 (369)
                        ++.+|      |++..| . +-++.+++.+.-.    +.-|.+|||+|++        +.+|+|-|--.|-.  ....
T Consensus       236 ~~i~sLDl~~L~AGtkyRGeFEeRlk~il~ei~~~----~~iILFIDEiHtlvGaG~~~g~~DaaNlLKPaLar--Gel~  309 (823)
T CHL00095        236 KLVLTLDIGLLLAGTKYRGEFEERIKKIMDEIKKA----NNIILVIDEIHTLIGAGAAEGAIDAANILKPALAR--GKLQ  309 (823)
T ss_pred             CCEEEEEHHHHHHCCCCCHHHHHHHHHHHHHHHHC----CCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHC--CCCE
T ss_conf             93688428877533422267999999999999857----98699973516532889766643178876578648--9866


Q ss_pred             EEEEECCC--CCCC---HHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHCCCCC------CCH
Q ss_conf             46650675--4330---35675433321024540013567876431----013456256644565316764------200
Q 537021.9.peg.4  139 FIFATTEI--RKIP---ITVLSRCQRFDLHRISIGDLIELFTKILQ----EESIEFDPEAVAMIARASDGS------ARD  203 (369)
Q Consensus       139 fil~t~~~--~~ll---~TI~SRcq~~~f~~l~~~~i~~~L~~i~~----~E~i~~d~~~l~~ia~~s~Gs------lR~  203 (369)
                      +|-+||.-  .+.+   +.+--|.|.+....++.++....|..+..    .+++.|+++++...+.+|.==      +.+
T Consensus       310 ~IGATT~~EYrk~iEkD~AL~RRFq~V~V~EPs~e~t~~IL~gl~~~yE~~H~V~i~d~Ai~aav~LS~RYi~dr~LPDK  389 (823)
T CHL00095        310 CIGATTLEEYRKHIEKDPALERRFQPVYVGEPSVEETIEILLGLRDRYEKHHNLSISDKALEAAAKLSDQYIKDRFLPDK  389 (823)
T ss_pred             EEEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf             99707889999985305889962684102899879999999999999987508850478999999987764037778217


Q ss_pred             HHHCCCCCCC
Q ss_conf             1100011100
Q 537021.9.peg.4  204 GLSLLDQAIA  213 (369)
Q Consensus       204 Al~lLeq~i~  213 (369)
                      |+.++|.+-+
T Consensus       390 AIDllDeA~A  399 (823)
T CHL00095        390 AIDLLDEAGS  399 (823)
T ss_pred             HHHHHHHHHH
T ss_conf             8888999989


No 84 
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=99.24  E-value=3.2e-11  Score=102.89  Aligned_cols=111  Identities=27%  Similarity=0.360  Sum_probs=73.2

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             20107879888899999999961468777886658789997799997798778222453322334555665554456542
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPI  103 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~  103 (369)
                      .||+||||+|||++|+++|+.+++.--..+      |.      .+. +.+     +   + -+...++++.+.+..   
T Consensus         1 iLl~GppGtGKT~~a~~la~~~~~~~~~v~------~~------~~~-~~~-----~---g-~~~~~i~~~f~~a~~---   55 (131)
T pfam00004         1 LLLYGPPGTGKTTLAKAVAKELGAPFIEIS------GS------ELV-SKY-----V---G-ESEKRLRELFEAAKK---   55 (131)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHCCCCEECC------CC------CCC-CCC-----C---C-HHHHHHHHHHHHHHH---
T ss_conf             987899999999999999999789853324------20------122-233-----4---5-068889999999997---


Q ss_pred             CCCCCEEEEECHHHCCC-----------CHHHHHHHHHHH---CCCCCCEEEEECCCCCCCHHHH-HHHHHH
Q ss_conf             04652377511566480-----------016789999972---1221114665067543303567-543332
Q 537021.9.peg.4  104 SARFRVYIMDEVQMLST-----------AAFNGLLKTLEE---PPPHVKFIFATTEIRKIPITVL-SRCQRF  160 (369)
Q Consensus       104 ~~~~kv~iid~a~~m~~-----------~a~NaLLK~lEE---Pp~~~~fil~t~~~~~ll~TI~-SRcq~~  160 (369)
                       ....|++|||+|.+..           ...+.||..|+.   +..+++||.+|++|+++.|.++ |||...
T Consensus        56 -~~p~Il~iDe~d~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~~I~tTN~~~~ld~al~r~Rfd~~  126 (131)
T pfam00004        56 -LAPCVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSLSKVIVIAATNRPDKLDPALLRGRFDRI  126 (131)
T ss_pred             -CCCCEEEECHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCHHHHCCCCEEE
T ss_conf             -49918983116777516788888751326878999985022468876999975990449977962833289


No 85 
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.22  E-value=3.4e-11  Score=102.68  Aligned_cols=184  Identities=21%  Similarity=0.304  Sum_probs=124.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC----
Q ss_conf             9284899999999998287670620107879888899999999961468777886658789997799997798778----
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVD----   76 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d----   76 (369)
                      |||-+.=++.+...+.+.+=++ -++.|+||+|||.++..||+.+                        ..|+-|+    
T Consensus       175 viGRd~Ei~r~i~IL~Rr~KNN-piLVGepGVGKTAIvEGLA~rI------------------------~~g~VP~~L~~  229 (852)
T TIGR03346       175 VIGRDEEIRRTIQVLSRRTKNN-PVLIGEPGVGKTAIVEGLAQRI------------------------VNGDVPESLKN  229 (852)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCC-CCEECCCCCCHHHHHHHHHHHH------------------------HCCCCCHHHHH
T ss_conf             7383699999999998732489-7212799987999999999998------------------------66999978851


Q ss_pred             --CCCCC------CCCCCC-H-HHHHHHHHHHHHHHHCCCCCEEEEECHHHC--------CCCHHHHHHHHHHHCCCCCC
Q ss_conf             --22245------332233-4-555665554456542046523775115664--------80016789999972122111
Q 537021.9.peg.4   77 --VVELD------AASHTS-I-DDVREIIDQIYYKPISARFRVYIMDEVQML--------STAAFNGLLKTLEEPPPHVK  138 (369)
Q Consensus        77 --~~e~~------~~s~~~-i-d~ir~l~~~~~~~p~~~~~kv~iid~a~~m--------~~~a~NaLLK~lEEPp~~~~  138 (369)
                        ++.+|      |++-.| . +.++.+++.+.-.+   +.-|.+|||+|++        +.+|+|-|--.|-.  ....
T Consensus       230 ~~i~~LDlg~LvAGtkyRGeFEeRlk~ii~ev~~~~---~~iILFIDEiHtliGaG~~~G~~DAaNlLKPaLar--Gelr  304 (852)
T TIGR03346       230 KRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSE---GQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR--GELH  304 (852)
T ss_pred             CCCEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHCC---CCEEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHC--CCCE
T ss_conf             851275288775215300789999999999998589---98799961255532688766641067774378747--9855


Q ss_pred             EEEEECCC--CCCC---HHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHCCCC------CCCH
Q ss_conf             46650675--4330---35675433321024540013567876431----01345625664456531676------4200
Q 537021.9.peg.4  139 FIFATTEI--RKIP---ITVLSRCQRFDLHRISIGDLIELFTKILQ----EESIEFDPEAVAMIARASDG------SARD  203 (369)
Q Consensus       139 fil~t~~~--~~ll---~TI~SRcq~~~f~~l~~~~i~~~L~~i~~----~E~i~~d~~~l~~ia~~s~G------slR~  203 (369)
                      +|-+||.-  .+.+   +.+--|.|.+....++.++....|+.+..    .+++.|+++++...+++|.-      =+-+
T Consensus       305 ~IgATT~~EYrk~iEkD~AL~RRFq~I~V~EPs~e~t~~IL~gl~~~yE~hH~V~i~d~Ai~aav~LS~RYi~~R~LPDK  384 (852)
T TIGR03346       305 CIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDK  384 (852)
T ss_pred             EEEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf             99827899999883226889973771204799868999999976999976279267399999999971346677889618


Q ss_pred             HHHCCCCCCCH
Q ss_conf             11000111000
Q 537021.9.peg.4  204 GLSLLDQAIAR  214 (369)
Q Consensus       204 Al~lLeq~i~~  214 (369)
                      |+.+||.+-+.
T Consensus       385 AIDlLDeA~a~  395 (852)
T TIGR03346       385 AIDLIDEAAAR  395 (852)
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999998


No 86 
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.20  E-value=1.1e-10  Score=98.91  Aligned_cols=182  Identities=19%  Similarity=0.308  Sum_probs=123.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC----
Q ss_conf             9284899999999998287670620107879888899999999961468777886658789997799997798778----
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVD----   76 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d----   76 (369)
                      |||-+.=++.+...+.+.+=.. -++.|+||+|||.++.-||+.+.                        .|.-|+    
T Consensus       188 viGR~~Ei~r~i~iL~Rr~KNN-piLvGepGVGKTAIvEGLA~rI~------------------------~g~VP~~L~~  242 (758)
T PRK11034        188 LIGREKELERAIQVLCRRRKNN-PLLVGESGVGKTAIAEGLAWRIV------------------------QGDVPEVMAD  242 (758)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCC-CEEECCCCCCHHHHHHHHHHHHH------------------------CCCCCHHHCC
T ss_conf             7384899999999997632589-60216999869999999999997------------------------3899765589


Q ss_pred             --CCCCC------CCCCCC-HH-HHHHHHHHHHHHHHCCCCCEEEEECHHHC---------CCCHHHHHHHHHHHCCCCC
Q ss_conf             --22245------332233-45-55665554456542046523775115664---------8001678999997212211
Q 537021.9.peg.4   77 --VVELD------AASHTS-ID-DVREIIDQIYYKPISARFRVYIMDEVQML---------STAAFNGLLKTLEEPPPHV  137 (369)
Q Consensus        77 --~~e~~------~~s~~~-id-~ir~l~~~~~~~p~~~~~kv~iid~a~~m---------~~~a~NaLLK~lEEPp~~~  137 (369)
                        ++.+|      |++-.| .+ .++.+++.+...    +.-|.+|||+|++         +.+|+|-|--.|-.  ...
T Consensus       243 ~~i~~Ldl~~LiAGtkyRGefEeRlk~vi~e~~~~----~~~ILFIDEiH~ivGaG~~~gg~~DaaNlLKP~Lar--G~l  316 (758)
T PRK11034        243 CTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQD----TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKI  316 (758)
T ss_pred             CEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHC----CCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHC--CCC
T ss_conf             88998458778616864154999999999999857----985999804344226887677764678874578746--972


Q ss_pred             CEEEEECC--CCCCC---HHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHCCCCC------CC
Q ss_conf             14665067--54330---35675433321024540013567876431----013456256644565316764------20
Q 537021.9.peg.4  138 KFIFATTE--IRKIP---ITVLSRCQRFDLHRISIGDLIELFTKILQ----EESIEFDPEAVAMIARASDGS------AR  202 (369)
Q Consensus       138 ~fil~t~~--~~~ll---~TI~SRcq~~~f~~l~~~~i~~~L~~i~~----~E~i~~d~~~l~~ia~~s~Gs------lR  202 (369)
                      .+|-+||.  ..+.+   +.+--|.|.+....++.++....|..+..    .+++.|+++++...+++|.=-      +.
T Consensus       317 ~~IgaTT~~EYrk~iekD~AL~RRFq~V~V~EPs~e~t~~IL~gl~~~yE~~H~v~~~d~al~~av~Ls~rYi~dr~lPD  396 (758)
T PRK11034        317 RVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPD  396 (758)
T ss_pred             EEEEECCHHHHHHCCCCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHCCCCCCH
T ss_conf             39994377998750321478884282653189998999999998999873236957743899999999976502688961


Q ss_pred             HHHHCCCCCCC
Q ss_conf             01100011100
Q 537021.9.peg.4  203 DGLSLLDQAIA  213 (369)
Q Consensus       203 ~Al~lLeq~i~  213 (369)
                      +|+.++|.+-+
T Consensus       397 KAIdllDea~a  407 (758)
T PRK11034        397 KAIDVIDEAGA  407 (758)
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999988


No 87 
>KOG1970 consensus
Probab=99.20  E-value=4.5e-10  Score=94.41  Aligned_cols=195  Identities=15%  Similarity=0.234  Sum_probs=116.8

Q ss_pred             HHHHHHHHH-----CCCCCEE-EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC-
Q ss_conf             999999998-----2876706-201078798888999999999614687778866587899977999977987782224-
Q 537021.9.peg.4    8 IKTLTNAFK-----SGRIAQS-YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL-   80 (369)
Q Consensus         8 ~~~l~~~~~-----~~~~~ha-~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~-   80 (369)
                      +...+.++.     ..+++|- +|++||.||||+|+.+.+|+.+..+-.++..|+.  |-      .-.. -|-+-... 
T Consensus        91 I~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~--~~------~~~~-~h~~t~~~~  161 (634)
T KOG1970          91 ISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPIN--LK------EPEN-LHNETSFLM  161 (634)
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCC--CC------CCCC-CCCCCHHCC
T ss_conf             89999999999974536676079985798887131999999864802123047766--56------6555-455440013


Q ss_pred             CCCCCCCHHHHHHHHHHH------HHH--HHCCCCCEEEEECH-HHCCCCHHHHHHHHHH----HCCCCCCEEEEECCC-
Q ss_conf             533223345556655544------565--42046523775115-6648001678999997----212211146650675-
Q 537021.9.peg.4   81 DAASHTSIDDVREIIDQI------YYK--PISARFRVYIMDEV-QMLSTAAFNGLLKTLE----EPPPHVKFIFATTEI-  146 (369)
Q Consensus        81 ~~~s~~~id~ir~l~~~~------~~~--p~~~~~kv~iid~a-~~m~~~a~NaLLK~lE----EPp~~~~fil~t~~~-  146 (369)
                      ++-. ...++.....+..      +..  -..++.|+++|||. +..-.++..+|.-.|.    +|--.++||++-.+. 
T Consensus       162 ~~~~-s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~  240 (634)
T KOG1970         162 FPYQ-SQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSN  240 (634)
T ss_pred             CCHH-HHHHHHHHHHHHHHHHCHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf             3036-678999989999876231653133334675079850261444003699999999999845777679998635357


Q ss_pred             -----CCC-CHH--HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHCCCCCCCHHHHCCCCCC
Q ss_conf             -----433-035--6754333210245400135678764310134562------56644565316764200110001110
Q 537021.9.peg.4  147 -----RKI-PIT--VLSRCQRFDLHRISIGDLIELFTKILQEESIEFD------PEAVAMIARASDGSARDGLSLLDQAI  212 (369)
Q Consensus       147 -----~~l-l~T--I~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d------~~~l~~ia~~s~GslR~Al~lLeq~i  212 (369)
                           .++ +.-  +.-|--++.|.|+.+.-|..+|..||..|+....      ...+..|+..++|++|-|++.| |..
T Consensus       241 g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~s~GDIRsAInsL-Qls  319 (634)
T KOG1970         241 GNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQGSGGDIRSAINSL-QLS  319 (634)
T ss_pred             CCCCHHHHCHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH-HHH
T ss_conf             8763434242656533585247615776799999999999986266666767506799999875277399998775-332


Q ss_pred             C
Q ss_conf             0
Q 537021.9.peg.4  213 A  213 (369)
Q Consensus       213 ~  213 (369)
                      +
T Consensus       320 s  320 (634)
T KOG1970         320 S  320 (634)
T ss_pred             C
T ss_conf             0


No 88 
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277   This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=99.17  E-value=1.3e-09  Score=91.04  Aligned_cols=226  Identities=16%  Similarity=0.230  Sum_probs=141.8

Q ss_pred             HHHHHHHHC-CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCC-CCC---CCCCCHH--------HHHHHCCCCC
Q ss_conf             999999982-87670620107879888899999999961468777886-658---7899977--------9999779877
Q 537021.9.peg.4    9 KTLTNAFKS-GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVP-TVE---FEGFGEH--------CQAIIRGNHV   75 (369)
Q Consensus         9 ~~l~~~~~~-~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~-~~~---~c~~c~~--------c~~i~~~~~~   75 (369)
                      ..|+-++ + |.-|...+++|++|||||+.++.+.+.|.-.....+.. +..   -|..-++        |.++. ..+-
T Consensus        31 ~~L~~~l-~PG~~P~Ni~iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~~NC~~~~T~y~~~~~L~~~ln-~~~~  108 (383)
T TIGR02928        31 KALRPIL-RPGSRPSNIFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVYINCQILDTSYQVLVELANQLN-RRGS  108 (383)
T ss_pred             HHHHHHH-CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHC-CCCC
T ss_conf             9988750-6748987258878889878899999999999986226997158999778546846999999999851-5778


Q ss_pred             CCCCCCCCCCCCH--HHH-HHHHHHHHHHHHCCCCCEEEEECHHHC---CCCH------HHHHHHH--HHHCC-CCCCEE
Q ss_conf             8222453322334--555-665554456542046523775115664---8001------6789999--97212-211146
Q 537021.9.peg.4   76 DVVELDAASHTSI--DDV-REIIDQIYYKPISARFRVYIMDEVQML---STAA------FNGLLKT--LEEPP-PHVKFI  140 (369)
Q Consensus        76 d~~e~~~~s~~~i--d~i-r~l~~~~~~~p~~~~~kv~iid~a~~m---~~~a------~NaLLK~--lEEPp-~~~~fi  140 (369)
                      +...    .++|+  +++ +.|.+.+.+  ..++.=|||+||.|.|   +.+-      =-.|++.  -++-. .++-.|
T Consensus       109 ~~~v----P~tG~s~~~~~~~l~~~l~~--~~~~~~~ivLDEiD~Lv~~~~d~PAyS~~LY~L~Ra~~~~~~~~~~vgvI  182 (383)
T TIGR02928       109 GEEV----PTTGLSTSEVFRELYKELNR--ERGDSLIIVLDEIDKLVRKDDDDPAYSKLLYQLSRARENGDLENAKVGVI  182 (383)
T ss_pred             CCCC----CCCCCCHHHHHHHHHHHHHH--HCCCEEEEEECCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf             8889----88778789999999999832--01887999862310221588888078788534331000357788534899


Q ss_pred             EEECCC---CCCCHHHHHHHH--HHHCCCCCCHHHHHHHHHHH-H---HCCCCCCHHHHHHHHHCC---CCCCCHHHHCC
Q ss_conf             650675---433035675433--32102454001356787643-1---013456256644565316---76420011000
Q 537021.9.peg.4  141 FATTEI---RKIPITVLSRCQ--RFDLHRISIGDLIELFTKIL-Q---EESIEFDPEAVAMIARAS---DGSARDGLSLL  208 (369)
Q Consensus       141 l~t~~~---~~ll~TI~SRcq--~~~f~~l~~~~i~~~L~~i~-~---~E~i~~d~~~l~~ia~~s---~GslR~Al~lL  208 (369)
                      -++++.   +.|=|=++|+-+  -+.|+|-..+|+.+-|++-. +   .+|+ ++++++.+.|.+|   .||.|+||-||
T Consensus       183 gISND~~f~~~Ld~RVkSsL~~eei~FpPYdA~eL~~IL~~R~v~~AF~dGv-l~d~VI~lcAA~aAq~hGDAR~AiDLL  261 (383)
T TIGR02928       183 GISNDLKFRENLDPRVKSSLCEEEIVFPPYDAEELRDILENRAVEKAFYDGV-LDDGVIPLCAALAAQEHGDARKAIDLL  261 (383)
T ss_pred             EEECCCHHHHHCCCCEECCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             9865714364457530132487400407988699999997203120336885-462279999998620678789999999


Q ss_pred             CCCCCH----HHCCCCHHHHHHCCCCC-CHHHHHHHHHHH
Q ss_conf             111000----00012103220001356-777778888763
Q 537021.9.peg.4  209 DQAIAR----CNDKIVTSSVRLMLALA-DRNRIMDLFGYL  243 (369)
Q Consensus       209 eq~i~~----~~~~i~~e~v~~llg~~-~~~~i~~Ll~ai  243 (369)
                      -.+--.    +.+.++.++|.+--... -.+.+.+++.-+
T Consensus       262 R~AGe~A~~~g~~~Vt~~HV~~A~e~~PE~~r~~e~~~~L  301 (383)
T TIGR02928       262 RVAGEIAEREGAERVTEDHVEEAQEKIPEVDRVLELIRGL  301 (383)
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCC
T ss_conf             9876875315763100888999998322288999986079


No 89 
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.17  E-value=1.1e-09  Score=91.65  Aligned_cols=193  Identities=15%  Similarity=0.169  Sum_probs=126.7

Q ss_pred             CC-HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             28-48999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    2 IG-QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         2 iG-q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      +| .+.+...+.+.+....- ..+.++||+|+|||-++.+++........                         .++.+
T Consensus        19 ~~~N~~~~~~l~~~~~~~~~-~~l~i~G~~GsGKTHLl~a~~~~~~~~~~-------------------------~~~yl   72 (226)
T TIGR03420        19 AGGNAELLAALRQLAAGKGD-RFLYLWGESGSGKSHLLQAACAAAEERGK-------------------------SAIYL   72 (226)
T ss_pred             CCCHHHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHHHCCCC-------------------------CEEEE
T ss_conf             58679999999987646688-86999899999889999999999862699-------------------------57995


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC--CCHHHHHHHHHHHCC-CCCCEEEEECC-CCC---CCHHH
Q ss_conf             533223345556655544565420465237751156648--001678999997212-21114665067-543---30356
Q 537021.9.peg.4   81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS--TAAFNGLLKTLEEPP-PHVKFIFATTE-IRK---IPITV  153 (369)
Q Consensus        81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~--~~a~NaLLK~lEEPp-~~~~fil~t~~-~~~---ll~TI  153 (369)
                      +...  -.+...+..+.+      -.+-+++||++|.+.  ...+.+|..++-+-- .+..++++++. |..   .+|-+
T Consensus        73 ~~~~--~~~~~~~~l~~l------~~~d~l~iDDi~~i~~~~~~e~~lF~l~N~~~~~~~~ilits~~~p~~l~~~l~dL  144 (226)
T TIGR03420        73 PLAE--LAQADPEVLEGL------EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDL  144 (226)
T ss_pred             CHHH--HHHHHHHHHHHC------CCCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHCCCCHHHH
T ss_conf             2999--877539999727------44899999663334378378999999999998652828986788823203201779


Q ss_pred             HHH---HHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCH---HHCCCCHHHHHHC
Q ss_conf             754---3332102454001356787643101345625664456531676420011000111000---0001210322000
Q 537021.9.peg.4  154 LSR---CQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIAR---CNDKIVTSSVRLM  227 (369)
Q Consensus       154 ~SR---cq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~---~~~~i~~e~v~~l  227 (369)
                      +||   +..+.+.+++.+.....|.+.+...|+.+++++++.|++....|+|....+++++-.+   ...++|..-+.++
T Consensus       145 ~SRl~~~~~~~I~~pdd~~~~~iL~k~~~~r~i~i~~~vi~yl~~r~~R~~~~l~~~l~~Ld~~sl~~kr~ITi~l~kev  224 (226)
T TIGR03420       145 RTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFVKEV  224 (226)
T ss_pred             HHHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             99996885685279999999999999999859988999999999863798999999999999999980899999999998


Q ss_pred             C
Q ss_conf             1
Q 537021.9.peg.4  228 L  228 (369)
Q Consensus       228 l  228 (369)
                      +
T Consensus       225 L  225 (226)
T TIGR03420       225 L  225 (226)
T ss_pred             H
T ss_conf             4


No 90 
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.12  E-value=1.9e-10  Score=97.23  Aligned_cols=102  Identities=20%  Similarity=0.245  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEECHHHC-----C----CCHHHHHHHHHHHCCCCCCEEEEECCCC--CCC---HHHHHH
Q ss_conf             5665554456542046523775115664-----8----0016789999972122111466506754--330---356754
Q 537021.9.peg.4   91 VREIIDQIYYKPISARFRVYIMDEVQML-----S----TAAFNGLLKTLEEPPPHVKFIFATTEIR--KIP---ITVLSR  156 (369)
Q Consensus        91 ir~l~~~~~~~p~~~~~kv~iid~a~~m-----~----~~a~NaLLK~lEEPp~~~~fil~t~~~~--~ll---~TI~SR  156 (369)
                      ++.+++.+...+    .-|.+|||+|++     +    .+|+|-|--.|-.  .....|-+||.-+  +.+   +..-=|
T Consensus       251 lk~vl~ev~~~~----~vILFIDEiHtiVGAG~~~g~a~DAaNiLKPaLAR--GeL~~IGATT~~EYRk~iEKD~AL~RR  324 (786)
T COG0542         251 LKAVLKEVEKSK----NVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR--GELRCIGATTLDEYRKYIEKDAALERR  324 (786)
T ss_pred             HHHHHHHHHCCC----CEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHCHHHHHC
T ss_conf             999999985179----84999823554057776666651256646778745--873799735589998873306677846


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHCCC
Q ss_conf             33321024540013567876431----0134562566445653167
Q 537021.9.peg.4  157 CQRFDLHRISIGDLIELFTKILQ----EESIEFDPEAVAMIARASD  198 (369)
Q Consensus       157 cq~~~f~~l~~~~i~~~L~~i~~----~E~i~~d~~~l~~ia~~s~  198 (369)
                      -|.+....++.++...-|+.+..    .+++.|.++++...+.+|.
T Consensus       325 FQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~  370 (786)
T COG0542         325 FQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSD  370 (786)
T ss_pred             CCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHH
T ss_conf             7510279989899999998778888770696433799999999998


No 91 
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.11  E-value=1e-09  Score=91.83  Aligned_cols=172  Identities=19%  Similarity=0.281  Sum_probs=105.6

Q ss_pred             CCCHHHHHHHHHHHHHC-----------C-CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             92848999999999982-----------8-76706201078798888999999999614687778866587899977999
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKS-----------G-RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQA   68 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~-----------~-~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~   68 (369)
                      |-|-+.+++.|+.+|.-           | +.|-..||+||||||||.+|+++|..+.|.--....            ..
T Consensus       134 IGGl~~~k~el~E~velPl~~pe~f~~~Gi~pPkGvLLyGPPGtGKTllAkAvA~e~~~~fi~v~~------------s~  201 (390)
T PRK03992        134 IGGLDEQIREVREAVELPLKNPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG------------SE  201 (390)
T ss_pred             HCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEH------------HH
T ss_conf             149899999999999998659899997699999727868989997899999999874888799667------------99


Q ss_pred             HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCC-------C----HH---HHHHHHHH--H
Q ss_conf             9779877822245332233455566555445654204652377511566480-------0----16---78999997--2
Q 537021.9.peg.4   69 IIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLST-------A----AF---NGLLKTLE--E  132 (369)
Q Consensus        69 i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~-------~----a~---NaLLK~lE--E  132 (369)
                      +.+.      ++ |.   +-..+|++-+.+...    ..-|++|||+|.+-.       .    .+   +.||--|+  +
T Consensus       202 l~sk------~v-Ge---sek~vr~lF~~Ar~~----aP~IiFiDEiDai~~~R~~~~~~g~~ev~r~l~qLL~emDG~~  267 (390)
T PRK03992        202 LVQK------FI-GE---GARLVRELFELAREK----APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD  267 (390)
T ss_pred             HHHC------CC-CH---HHHHHHHHHHHHHHH----CCCEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             7524------54-17---999999999999970----9908971432566335677888620889999999999744877


Q ss_pred             CCCCCCEEEEECCCCCCCHHHHH--HH-HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHCCCCC
Q ss_conf             12211146650675433035675--43-3321024540013567876431013456256-644565316764
Q 537021.9.peg.4  133 PPPHVKFIFATTEIRKIPITVLS--RC-QRFDLHRISIGDLIELFTKILQEESIEFDPE-AVAMIARASDGS  200 (369)
Q Consensus       133 Pp~~~~fil~t~~~~~ll~TI~S--Rc-q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~-~l~~ia~~s~Gs  200 (369)
                      +..++++|.+|+.|+.|-|.++=  |. .++.|..++.+.-.+.|+-.+.  ++..+++ .+..+|+.++|=
T Consensus       268 ~~~~V~VIaATNrpd~LDpAllRpGRFDr~I~iplPd~~~R~~Ilki~~~--~~~l~~dvdl~~lA~~T~G~  337 (390)
T PRK03992        268 PRGNVKIIAATNRPDILDPALLRPGRFDRIIEVPLPDEEGRLEILKIHTR--KMNLADDVDLEELAELTEGA  337 (390)
T ss_pred             CCCCEEEEEECCCCHHCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHCCCC
T ss_conf             77882799606981005977754776523887089499999999999847--99999888999999768799


No 92 
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.11  E-value=5.3e-10  Score=93.89  Aligned_cols=112  Identities=27%  Similarity=0.366  Sum_probs=73.1

Q ss_pred             CCCHHHHHHHHHHHHHC------------CC--C-CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
Q ss_conf             92848999999999982------------87--6-706201078798888999999999614687778866587899977
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKS------------GR--I-AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEH   65 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~------------~~--~-~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~   65 (369)
                      ||||+++++.|.-++-+            +.  + ....|+.||.|+|||.+|+.+|+.|+-.-...+.-+..       
T Consensus        74 VIGQ~~AKk~lsVAvyNHykRi~~~~~~~~~vei~KsNILliGPTG~GKTlla~tLAk~l~vPF~iaDAT~lT-------  146 (411)
T PRK05342         74 VIGQERAKKVLSVAVYNHYKRLRQNGSKSDDVELQKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLT-------  146 (411)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECEEC-------
T ss_conf             0284888899999999999998602133566521345389989999778899999999869998998612001-------


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHCCCCCEEEEECHHHCCCC--------------HHHHHHHHH
Q ss_conf             9999779877822245332233455-5665554456542046523775115664800--------------167899999
Q 537021.9.peg.4   66 CQAIIRGNHVDVVELDAASHTSIDD-VREIIDQIYYKPISARFRVYIMDEVQMLSTA--------------AFNGLLKTL  130 (369)
Q Consensus        66 c~~i~~~~~~d~~e~~~~s~~~id~-ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~--------------a~NaLLK~l  130 (369)
                          ..|..         + --||. ++.|...+.+-...+.+=|+.|||.|++.+.              -|.||||.+
T Consensus       147 ----EaGYV---------G-eDVE~ii~~Llq~Ad~dve~Ae~GIV~IDEIDKIarks~~~s~trDVSgEGVQqaLLkii  212 (411)
T PRK05342        147 ----EAGYV---------G-EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKIL  212 (411)
T ss_pred             ----CCCCC---------C-CCHHHHHHHHHHHCCCCHHHHHCCEEEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             ----26745---------6-079999999999828889988368288850234542478888877765124899999987


Q ss_pred             HHC
Q ss_conf             721
Q 537021.9.peg.4  131 EEP  133 (369)
Q Consensus       131 EEP  133 (369)
                      |.-
T Consensus       213 EGt  215 (411)
T PRK05342        213 EGT  215 (411)
T ss_pred             CCC
T ss_conf             587


No 93 
>CHL00176 ftsH cell division protein; Validated
Probab=99.09  E-value=6.5e-10  Score=93.26  Aligned_cols=177  Identities=20%  Similarity=0.308  Sum_probs=111.8

Q ss_pred             CCCHHHHHHHHHHHHH-----------CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             9284899999999998-----------28767062010787988889999999996146877788665878999779999
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFK-----------SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAI   69 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~-----------~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i   69 (369)
                      |.|++.+++.|...+.           -.|+|...||+||||+|||.+|+++|..-    +   .|-..           
T Consensus       179 VaG~~eaK~el~EivdfLk~P~k~~~~Gak~PkGvLL~GpPGTGKTlLAkAvAgEa----~---vpF~~-----------  240 (631)
T CHL00176        179 VAGVEEAKEELEEVVTFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----E---VPFFS-----------  240 (631)
T ss_pred             CCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCC----C---CCEEE-----------
T ss_conf             28858999999999998359588764499689658988989987889999985655----8---84699-----------


Q ss_pred             HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC--------------CCHHHHHHHHHH--HC
Q ss_conf             77987782224533223345556655544565420465237751156648--------------001678999997--21
Q 537021.9.peg.4   70 IRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS--------------TAAFNGLLKTLE--EP  133 (369)
Q Consensus        70 ~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~--------------~~a~NaLLK~lE--EP  133 (369)
                        -+-.|+.|+--  -.|...||+|-+.+....    .-|++|||.|..-              .+.-|.||--|.  +.
T Consensus       241 --~sgs~F~e~~v--Gvga~rVR~LF~~Ar~~a----P~IiFIDEiDaig~~Rg~~~~gg~~e~e~tlnqLL~emDGf~~  312 (631)
T CHL00176        241 --ISGSEFVEMFV--GVGAARVRDLFKKAKENS----PCIVFIDEIDAVGRQRGAGVGGGNDEREQTLNQLLTEMDGFEG  312 (631)
T ss_pred             --EEHHHHHHHHC--CHHHHHHHHHHHHHHHCC----CEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             --88378556421--555899999999998639----9699987101201147898889850899999999998428887


Q ss_pred             CCCCCEEEEECCCCCCCHHHHH--HH-HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHCCCCCCCHHH
Q ss_conf             2211146650675433035675--43-3321024540013567876431013456256-64456531676420011
Q 537021.9.peg.4  134 PPHVKFIFATTEIRKIPITVLS--RC-QRFDLHRISIGDLIELFTKILQEESIEFDPE-AVAMIARASDGSARDGL  205 (369)
Q Consensus       134 p~~~~fil~t~~~~~ll~TI~S--Rc-q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~-~l~~ia~~s~GslR~Al  205 (369)
                      .++++.|-+|+.|+.|=|.++=  |- .++.+..++.+.-.+.|+..+.+  ..++++ .+..||+.+.|=-+..|
T Consensus       313 ~~gViViaATNrpd~LDpALlRPGRFDR~I~V~lPD~~gR~~IL~vh~k~--~~l~~dvdl~~iA~~T~GfSGAdL  386 (631)
T CHL00176        313 NKGVIVIAATNRIDILDAALLRPGRFDRQVTVSLPDFEGRLDILKVHARN--KKLAEDVSLELIARRTPGFSGADL  386 (631)
T ss_pred             CCCEEEEEECCCCCCCCHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHCCCCCHHHH
T ss_conf             88869998258855456866268877549982698989999999999707--866653009999862699867888


No 94 
>KOG1968 consensus
Probab=99.08  E-value=3.7e-10  Score=95.11  Aligned_cols=173  Identities=19%  Similarity=0.231  Sum_probs=114.6

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             62010787988889999999996146877788665878999779999779877822245332233455566555445654
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKP  102 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p  102 (369)
                      |.+.+||+|+|||++|...|+.+...--..+.      +.|++-+....      .+.++.+.-.|..-+  ..+-.-..
T Consensus       359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Na------s~~RSk~~l~~------~~~~~~~s~si~~~~--~~~~~~~~  424 (871)
T KOG1968         359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNA------SDVRSKKELLN------KLGNATSSHSIKGSK--KKKGNRQS  424 (871)
T ss_pred             HHHHCCCCCCCCHHHHHHHHHHCCCCEEECCC------CCCCCCCHHHH------HHHCCCCCCCHHHHH--CCCCCCCC
T ss_conf             88731788777205676630120654010475------43344227776------640244664000111--11133000


Q ss_pred             HCCCCCEEEEECHHHCCC---CHHHHHHHHHHHCCCCCCEEEEECCCCCCCH-HHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf             204652377511566480---0167899999721221114665067543303-567543332102454001356787643
Q 537021.9.peg.4  103 ISARFRVYIMDEVQMLST---AAFNGLLKTLEEPPPHVKFIFATTEIRKIPI-TVLSRCQRFDLHRISIGDLIELFTKIL  178 (369)
Q Consensus       103 ~~~~~kv~iid~a~~m~~---~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~-TI~SRcq~~~f~~l~~~~i~~~L~~i~  178 (369)
                      ..+.+-|+|+||+|-|..   ..+-+|-...++  ...-.|++|++.+-... ++-+=|.-++|+.++...+..++..|+
T Consensus       425 ~~~~~~vil~devD~~~~~dRg~v~~l~~l~~k--s~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~  502 (871)
T KOG1968         425 LNSDHFLILMDEVDGMFGEDRGGVSKLSSLCKK--SSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSIC  502 (871)
T ss_pred             CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCCHHHHCCEEEECCCCHHHHHHHHHHHH
T ss_conf             466606999742554420001369999999986--357768873377776652022320023404885777776665330


Q ss_pred             HHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCC
Q ss_conf             1013456256644565316764200110001110
Q 537021.9.peg.4  179 QEESIEFDPEAVAMIARASDGSARDGLSLLDQAI  212 (369)
Q Consensus       179 ~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i  212 (369)
                      ..|++.++++.++-++..++|++|..++.| |.+
T Consensus       503 ~se~~ki~~~~l~~~s~~~~~DiR~~i~~l-q~~  535 (871)
T KOG1968         503 KSEGIKISDDVLEEISKLSGGDIRQIIMQL-QFW  535 (871)
T ss_pred             CCCCEECCCHHHHHHHHHCCCCHHHHHHHH-HHH
T ss_conf             246424172788999875064799999877-644


No 95 
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.06  E-value=2.6e-09  Score=88.79  Aligned_cols=209  Identities=19%  Similarity=0.232  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH----HHC--CCCCCCCC
Q ss_conf             999999999982876706201078798888999999999614687778866587899977999----977--98778222
Q 537021.9.peg.4    6 PMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQA----IIR--GNHVDVVE   79 (369)
Q Consensus         6 ~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~----i~~--~~~~d~~e   79 (369)
                      ++...|..++..++ |+..+++||+|+|||.+++.+++.+.-.....+ .+---|-.-++-.+    +..  ++-|..- 
T Consensus        28 ~l~~~l~~~~~~~~-p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~~~~~~p~~g-  104 (366)
T COG1474          28 QLASFLAPALRGER-PSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILNKLGKVPLTG-  104 (366)
T ss_pred             HHHHHHHHHHCCCC-CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCC-EEEEEEEECCCHHHHHHHHHHHHCCCCCCC-
T ss_conf             99999999855899-860799889998732899999999973315675-799951307878799999999826899767-


Q ss_pred             CCCCCCCCHHHH-HHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHH---HHHHHHCCCCCCEEEEECCC---CCCCHH
Q ss_conf             453322334555-66555445654204652377511566480016789---99997212211146650675---433035
Q 537021.9.peg.4   80 LDAASHTSIDDV-REIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGL---LKTLEEPPPHVKFIFATTEI---RKIPIT  152 (369)
Q Consensus        80 ~~~~s~~~id~i-r~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaL---LK~lEEPp~~~~fil~t~~~---~~ll~T  152 (369)
                            ....++ ..+.+.+.   ..++.=|+|+||+|.|-....+.|   ++.-+++..++.+|.++++.   +.+-|-
T Consensus       105 ------~~~~~~~~~l~~~~~---~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~r  175 (366)
T COG1474         105 ------DSSLEILKRLYDNLS---KKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPR  175 (366)
T ss_pred             ------CCHHHHHHHHHHHHH---HCCCEEEEEECCHHHHHCCCCCHHHHEECCCCCCCEEEEEEEEECCHHHHHHHHHH
T ss_conf             ------632689999999777---41875999976476541546414551112477675379999973548899987566


Q ss_pred             HHHHHHHHH--CCCCCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHC---CCCCCCHHHHCCCCCCCHHH----CCCCH
Q ss_conf             675433321--0245400135678764310--1345625664456531---67642001100011100000----01210
Q 537021.9.peg.4  153 VLSRCQRFD--LHRISIGDLIELFTKILQE--ESIEFDPEAVAMIARA---SDGSARDGLSLLDQAIARCN----DKIVT  221 (369)
Q Consensus       153 I~SRcq~~~--f~~l~~~~i~~~L~~i~~~--E~i~~d~~~l~~ia~~---s~GslR~Al~lLeq~i~~~~----~~i~~  221 (369)
                      |.||-+...  |+|-+.+|+...|..-++.  ..-.+++++++++|..   ..||.|.|+.+|..+.-..+    +.++.
T Consensus       176 v~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~  255 (366)
T COG1474         176 VKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSE  255 (366)
T ss_pred             HHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf             76506876355289898999999999998540468748039999999887618647760899999999865407885370


Q ss_pred             HHHHH
Q ss_conf             32200
Q 537021.9.peg.4  222 SSVRL  226 (369)
Q Consensus       222 e~v~~  226 (369)
                      +.+..
T Consensus       256 ~~v~~  260 (366)
T COG1474         256 DHVRE  260 (366)
T ss_pred             HHHHH
T ss_conf             04788


No 96 
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.05  E-value=1.6e-09  Score=90.36  Aligned_cols=180  Identities=20%  Similarity=0.351  Sum_probs=110.0

Q ss_pred             CHHHHHHHHHHHH-----HCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf             8489999999999-----82876706201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4    3 GQKPMIKTLTNAF-----KSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV   77 (369)
Q Consensus         3 Gq~~~~~~l~~~~-----~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~   77 (369)
                      |-+.+++.+-..+     ..+.=+.-+.|.||||+|||++|+-.|++|+..--.                 |+-|.--|-
T Consensus       326 GL~~vKeRile~lAv~~~~~~~kg~IlclvGpPGvGKTSl~~sIA~al~r~f~r-----------------islGGv~De  388 (784)
T PRK10787        326 GLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVR-----------------MALGGVRDE  388 (784)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEE-----------------EECCCCCCH
T ss_conf             657799999999999986246778779964699877246999999985898699-----------------806887888


Q ss_pred             CCCCCCCCCCHHHH-HHHHHHHHHHHHCCCCCEEEEECHHHCCC----CHHHHHHHHHHHCCC----------------C
Q ss_conf             22453322334555-66555445654204652377511566480----016789999972122----------------1
Q 537021.9.peg.4   78 VELDAASHTSIDDV-REIIDQIYYKPISARFRVYIMDEVQMLST----AAFNGLLKTLEEPPP----------------H  136 (369)
Q Consensus        78 ~e~~~~s~~~id~i-r~l~~~~~~~p~~~~~kv~iid~a~~m~~----~a~NaLLK~lEEPp~----------------~  136 (369)
                      -||.|-..+=|.-+ -.++..+..  .....=|+++||.|+|+.    +-+.|||-.|. |-.                +
T Consensus       389 aeirGHrrTYvgampGrii~~l~~--a~~~nPv~llDEiDK~~~~~~Gdp~salLEvLD-peQN~~F~Dhyl~~~~DlS~  465 (784)
T PRK10787        389 AEIRGHRRTYIGSMPGKLIQKMAK--VGVKNPLFLLDEIDKMSSDMRGDPASALLEVLD-PEQNVAFSDHYLEVDYDLSD  465 (784)
T ss_pred             HHHCCCCCCCCCCCCHHHHHHHHH--HCCCCCEEEEHHHHHHCCCCCCCHHHHHHHHCC-HHHCCCCCCCEEECCCCHHH
T ss_conf             882564334344368389999997--489885665003555224558998899998459-76556400032204645222


Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHH----HHHH-HHH-----HHCCCCCCHHHHHHHHHC--CCCCCCH
Q ss_conf             11466506754330356754333210245400135----6787-643-----101345625664456531--6764200
Q 537021.9.peg.4  137 VKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLI----ELFT-KIL-----QEESIEFDPEAVAMIARA--SDGSARD  203 (369)
Q Consensus       137 ~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~----~~L~-~i~-----~~E~i~~d~~~l~~ia~~--s~GslR~  203 (369)
                      |.||.++++.+ ++++.+-|.-++.+...+.++=.    .||- +.+     ....+.++++++..|.+.  -+..+|.
T Consensus       466 v~Fi~TaN~~~-ip~pLlDRmE~i~~~gYt~~eK~~Ia~~~l~p~~~~~~gl~~~~~~~~~~~~~~ii~~ytrEaGvR~  543 (784)
T PRK10787        466 VMFVATSNSMN-IPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRS  543 (784)
T ss_pred             EEEEEECCCCC-CCHHHHHHEEEEEECCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf             58997327677-8767763121554116767889999997453999998289965674399999998753365444251


No 97 
>KOG1942 consensus
Probab=99.01  E-value=1.3e-08  Score=83.71  Aligned_cols=119  Identities=25%  Similarity=0.314  Sum_probs=95.4

Q ss_pred             CCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEEC-------------CCCCCCHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             52377511566480016789999972122111466506-------------75433035675433321024540013567
Q 537021.9.peg.4  107 FRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATT-------------EIRKIPITVLSRCQRFDLHRISIGDLIEL  173 (369)
Q Consensus       107 ~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~-------------~~~~ll~TI~SRcq~~~f~~l~~~~i~~~  173 (369)
                      .-|.+|||+||+-.+++--|-|.||-|-..++ ||+++             .|+-+++-..-|-.+++-.+-+++++.+.
T Consensus       297 PGVLFIDEVhMLDiEcFTyL~kalES~iaPiv-ifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~I  375 (456)
T KOG1942         297 PGVLFIDEVHMLDIECFTYLHKALESPIAPIV-IFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQI  375 (456)
T ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEE-EEECCCCCEEECCCCCCCCCCCCCHHHHHHEEEEEECCCCHHHHHHH
T ss_conf             76268630132426999999998627787569-99627761022177678787889977861266786036998999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHCC-CCCCCHHHHCCCC---CCC-HHHCCCCHHHHHH
Q ss_conf             876431013456256644565316-7642001100011---100-0000121032200
Q 537021.9.peg.4  174 FTKILQEESIEFDPEAVAMIARAS-DGSARDGLSLLDQ---AIA-RCNDKIVTSSVRL  226 (369)
Q Consensus       174 L~~i~~~E~i~~d~~~l~~ia~~s-~GslR~Al~lLeq---~i~-~~~~~i~~e~v~~  226 (369)
                      ++.-++.|++.++++++.+++..+ .-|+|-|+++|--   +.. ++.+.|..++|.+
T Consensus       376 i~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee  433 (456)
T KOG1942         376 IKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEE  433 (456)
T ss_pred             HHHHHHHHCCEECHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCCCCEEECCCHHH
T ss_conf             9998765142322889999876054145788988537888999871985343124899


No 98 
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.97  E-value=3.5e-09  Score=87.87  Aligned_cols=175  Identities=20%  Similarity=0.309  Sum_probs=104.9

Q ss_pred             CCCHHHHHHHHHHHHH-----------CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             9284899999999998-----------28767062010787988889999999996146877788665878999779999
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFK-----------SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAI   69 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~-----------~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i   69 (369)
                      |.|++.+++.|...|.           -.|+|...|++||||+|||.+|+++|..-.       .|.             
T Consensus       154 VaG~~eaK~el~EiVdfLk~P~k~~~~Gak~PkGvLL~GPPGtGKTlLAkAvAgEa~-------vpF-------------  213 (644)
T PRK10733        154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK-------VPF-------------  213 (644)
T ss_pred             CCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCC-------CEE-------------
T ss_conf             089789999999999981297999974997998517779899877899999864559-------808-------------


Q ss_pred             HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC--------------CCHHHHHHHHHH--HC
Q ss_conf             77987782224533223345556655544565420465237751156648--------------001678999997--21
Q 537021.9.peg.4   70 IRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS--------------TAAFNGLLKTLE--EP  133 (369)
Q Consensus        70 ~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~--------------~~a~NaLLK~lE--EP  133 (369)
                      ..-+-.|+.|+--  --|-..||++-+.+....    .-|++|||.|.+-              .+.-|.||--|.  ++
T Consensus       214 ~~~sgsef~e~~v--Gvga~rVR~lF~~Ar~~a----P~IIFIDEiDaig~~R~~~~~gg~~e~~~tlNqlL~EmDGf~~  287 (644)
T PRK10733        214 FTISGSDFVEMFV--GVGASRVRDMFEQAKKAA----PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG  287 (644)
T ss_pred             EEEEHHHHHHEEE--ECCHHHHHHHHHHHHHCC----CEEEEEECHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             9978477302225--306899999999999669----9799995322036667898889832888789999999548888


Q ss_pred             CCCCCEEEEECCCCCCCHHHHH--HH-HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHCCCCCCCH
Q ss_conf             2211146650675433035675--43-3321024540013567876431013456256-644565316764200
Q 537021.9.peg.4  134 PPHVKFIFATTEIRKIPITVLS--RC-QRFDLHRISIGDLIELFTKILQEESIEFDPE-AVAMIARASDGSARD  203 (369)
Q Consensus       134 p~~~~fil~t~~~~~ll~TI~S--Rc-q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~-~l~~ia~~s~GslR~  203 (369)
                      ..+++.|-+|+.|+.|=|.++=  |- .++.+..++.+.=.+.|+-.+.  ++.++++ .+..+|+...|=-+.
T Consensus       288 ~~~ViviaATNrpd~LD~ALlRPGRFDr~I~V~lPd~~~R~~ILkvh~~--~~~l~~dvdl~~lA~~T~GfSGA  359 (644)
T PRK10733        288 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR--RVPLAPDIDAAIIARGTPGFSGA  359 (644)
T ss_pred             CCCEEEEEECCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHC--CCCCCCCCCHHHHHCCCCCCCHH
T ss_conf             7876999626997554777716888655999779898899999999964--88777311589884459986703


No 99 
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.96  E-value=2.1e-08  Score=82.09  Aligned_cols=133  Identities=20%  Similarity=0.311  Sum_probs=87.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCC-------C-EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf             92848999999999982876-------7-062010787988889999999996146877788665878999779999779
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRI-------A-QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRG   72 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~-------~-ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~   72 (369)
                      ||||+++++.+.++|...|.       | -++||.||.|+|||-+|+.+|..|+-...........-...-.+ ..-.-|
T Consensus       570 ViGQd~AI~~v~~aI~~sraGL~dp~rPiGsFLFlGPTGVGKTElAK~LA~~LF~~e~~liriDMSEy~E~hs-VSrLiG  648 (857)
T PRK10865        570 VIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHS-VSRLVG  648 (857)
T ss_pred             HCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHEEEECCHHHCCCHH-HHHHCC
T ss_conf             5280999999999999986389999997389998689878889999999999838933425625332113012-767558


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC-----------CCCCEEE
Q ss_conf             87782224533223345556655544565420465237751156648001678999997212-----------2111466
Q 537021.9.peg.4   73 NHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP-----------PHVKFIF  141 (369)
Q Consensus        73 ~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp-----------~~~~fil  141 (369)
                      .-|-++        |-++==.|.+.++.+||.    |+++||.|+=.++-+|-||-.|+|--           .||++||
T Consensus       649 aPPGYV--------Gy~eGG~LTeaVRr~PyS----VvLfDEIEKAHpdV~nilLQvlD~G~LtD~~Gr~vdF~NtIIIm  716 (857)
T PRK10865        649 APPGYV--------GYEEGGYLTEAVRRRPYS----VILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIM  716 (857)
T ss_pred             CCCCCC--------CCCCCCCHHHHHHHCCCE----EEEEHHHHHHCHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEEE
T ss_conf             998766--------757788110999819877----88632576638589999998703683207999888513348996


Q ss_pred             EECCCC
Q ss_conf             506754
Q 537021.9.peg.4  142 ATTEIR  147 (369)
Q Consensus       142 ~t~~~~  147 (369)
                      + +|..
T Consensus       717 T-SN~G  721 (857)
T PRK10865        717 T-SNLG  721 (857)
T ss_pred             C-CCHH
T ss_conf             4-6233


No 100
>PRK05642 DNA replication initiation factor; Validated
Probab=98.96  E-value=2.7e-08  Score=81.33  Aligned_cols=197  Identities=14%  Similarity=0.201  Sum_probs=126.5

Q ss_pred             CCC-HHHHHHHHHHHHHCCC--CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf             928-4899999999998287--6706201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4    1 MIG-QKPMIKTLTNAFKSGR--IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV   77 (369)
Q Consensus         1 iiG-q~~~~~~l~~~~~~~~--~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~   77 (369)
                      ++| ++.+...+++.++...  -...+.++||+|+|||-+..+.+....-..                         ..+
T Consensus        22 i~g~N~~a~~~~~~l~~~~~~~~~~~l~i~G~~G~GKTHLL~A~~~~~~~~~-------------------------~~~   76 (234)
T PRK05642         22 YPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRG-------------------------EPA   76 (234)
T ss_pred             CCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC-------------------------CCE
T ss_conf             7187599999999987606787788389988999988999999999998079-------------------------967


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC--CCHHHHHHHHHHHCC-CCCCEEEEECC-CCC---CC
Q ss_conf             224533223345556655544565420465237751156648--001678999997212-21114665067-543---30
Q 537021.9.peg.4   78 VELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS--TAAFNGLLKTLEEPP-PHVKFIFATTE-IRK---IP  150 (369)
Q Consensus        78 ~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~--~~a~NaLLK~lEEPp-~~~~fil~t~~-~~~---ll  150 (369)
                      ++++...  -.+..-++.+.+      ..+-+++||++|.+.  ...+.+|-.++.+-- .+..++++++. |..   .+
T Consensus        77 ~yl~~~~--~~~~~~~~~~~l------~~~d~l~IDDi~~i~g~~~~e~~lF~l~N~~~~~~~~llits~~~P~~l~~~l  148 (234)
T PRK05642         77 VYLPLAE--LLDRGPELLDNL------EQYELVCIDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPVKL  148 (234)
T ss_pred             EEEEHHH--HHHHHHHHHHHH------HHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCH
T ss_conf             9978999--875449998624------22798989364554688599999999999999839959995787955523001


Q ss_pred             HHHHHHH---HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCH---HHCCCCHHHH
Q ss_conf             3567543---332102454001356787643101345625664456531676420011000111000---0001210322
Q 537021.9.peg.4  151 ITVLSRC---QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIAR---CNDKIVTSSV  224 (369)
Q Consensus       151 ~TI~SRc---q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~---~~~~i~~e~v  224 (369)
                      |-++||.   ..+.+.++++++....|...+...|+.+++++++.|++....|+|....+++++-.+   ...+||..-+
T Consensus       149 ~DL~SRl~~~~~~~i~~l~d~~~~~iL~~~a~~rgi~l~~~v~~yl~~r~~R~~~~L~~~l~~Ld~~sl~~kr~iTiplv  228 (234)
T PRK05642        149 PDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLDQASLQAQRKLTIPFL  228 (234)
T ss_pred             HHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf             67999995781275148998999999999977546899989999999973588999999999999999983899999999


Q ss_pred             HHCCCC
Q ss_conf             000135
Q 537021.9.peg.4  225 RLMLAL  230 (369)
Q Consensus       225 ~~llg~  230 (369)
                      .+++|.
T Consensus       229 k~vLg~  234 (234)
T PRK05642        229 KETLGW  234 (234)
T ss_pred             HHHHCC
T ss_conf             998385


No 101
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.95  E-value=3.4e-09  Score=87.98  Aligned_cols=172  Identities=24%  Similarity=0.375  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHCCCC-CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf             8999999999982876-706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4    5 KPMIKTLTNAFKSGRI-AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA   83 (369)
Q Consensus         5 ~~~~~~l~~~~~~~~~-~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~   83 (369)
                      +.|++.|.-.-..+.+ +.-+.|.||||+|||++++-.|++++-.--                 +|+-|.--|--||.|-
T Consensus       333 eRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv-----------------R~sLGGvrDEAEIRGH  395 (782)
T COG0466         333 ERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV-----------------RISLGGVRDEAEIRGH  395 (782)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEE-----------------EEECCCCCCHHHHCCC
T ss_conf             99999999998614678857999789988701189999999589779-----------------9954765427775355


Q ss_pred             CCCCHHHH-HHHHHHHHHHHHCCCCCEEEEECHHHCCCC----HHHHHHHHHHHCCCC----------------CCEEEE
Q ss_conf             22334555-665554456542046523775115664800----167899999721221----------------114665
Q 537021.9.peg.4   84 SHTSIDDV-REIIDQIYYKPISARFRVYIMDEVQMLSTA----AFNGLLKTLEEPPPH----------------VKFIFA  142 (369)
Q Consensus        84 s~~~id~i-r~l~~~~~~~p~~~~~kv~iid~a~~m~~~----a~NaLLK~lEEPp~~----------------~~fil~  142 (369)
                      -++=|-.+ -.++..+..  ..-..=||++||.|+|+.+    -+-|||-+|. |-.|                |.||.+
T Consensus       396 RRTYIGaMPGrIiQ~mkk--a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLD-PEQN~~F~DhYLev~yDLS~VmFiaT  472 (782)
T COG0466         396 RRTYIGAMPGKIIQGMKK--AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLD-PEQNNTFSDHYLEVPYDLSKVMFIAT  472 (782)
T ss_pred             CCCCCCCCCHHHHHHHHH--HCCCCCEEEEECHHHCCCCCCCCHHHHHHHHCC-HHHCCCHHHCCCCCCCCHHHEEEEEE
T ss_conf             312335687289999998--677687478640333167777886888886269-76567612220167664432588860


Q ss_pred             ECCCCCCCHHHHHHHHHHHCCCCCCHH---H-HHHHH-HHHHH-----CCCCCCHHHHHHHHHC
Q ss_conf             067543303567543332102454001---3-56787-64310-----1345625664456531
Q 537021.9.peg.4  143 TTEIRKIPITVLSRCQRFDLHRISIGD---L-IELFT-KILQE-----ESIEFDPEAVAMIARA  196 (369)
Q Consensus       143 t~~~~~ll~TI~SRcq~~~f~~l~~~~---i-~~~L~-~i~~~-----E~i~~d~~~l~~ia~~  196 (369)
                      +++.+.||.+.+-|.-++++..-+.++   | ..||- +.++.     ..+.++++++..|.+.
T Consensus       473 ANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~  536 (782)
T COG0466         473 ANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRY  536 (782)
T ss_pred             CCCCCCCCHHHHCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHCCCCCCCEEECHHHHHHHHHH
T ss_conf             3751329867843030564268886999999998445689997599823355658999999998


No 102
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.95  E-value=5.2e-09  Score=86.62  Aligned_cols=214  Identities=19%  Similarity=0.282  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC--CCCCCCC
Q ss_conf             99999999998287670620107879888899999999961468777886658789997799997798778--2224533
Q 537021.9.peg.4    6 PMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVD--VVELDAA   83 (369)
Q Consensus         6 ~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d--~~e~~~~   83 (369)
                      +|-..+...+.++--+.++-.+|.||+|||.+.+...+.|.-                    ....|.-|+  ++||+|-
T Consensus       278 ~I~~Fie~~i~q~GtG~cLYISGVPGTGKTATV~eVIr~L~~--------------------~~~~~~lp~F~fVEINGM  337 (650)
T PTZ00112        278 EIRTFLETGIKQGGTGQILYISGVPGTGKTATVYMVIKELQN--------------------KKLKGQLPWFNLFEINGV  337 (650)
T ss_pred             HHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH--------------------HHHCCCCCCCEEEEECCE
T ss_conf             999999864116886656999789999800369999999999--------------------997089998159997363


Q ss_pred             C-----------------CC--CHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCC-CCEE--E
Q ss_conf             2-----------------23--34555665554456542046523775115664800167899999721221-1146--6
Q 537021.9.peg.4   84 S-----------------HT--SIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPH-VKFI--F  141 (369)
Q Consensus        84 s-----------------~~--~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~-~~fi--l  141 (369)
                      .                 ..  .-.+.-.+++... .+ .-+.-|+++||.|.|=+.-|+-|--.++=|... ..+|  -
T Consensus       338 kLt~P~qaY~~L~e~Ltg~k~~~~~~A~~lL~k~F-~~-~r~p~VlLvDELD~LvTkkQ~VlYNLFdWPT~~~SkLIVIa  415 (650)
T PTZ00112        338 NLVHPNAAYRVFYKKLFNKKPPNALNSYKELDKLF-NN-NRTPSILIVDEADYIVTKTQKVLFTLFDWPTKKNSKLILII  415 (650)
T ss_pred             ECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-CC-CCCCEEEEECHHHHHHHCCCCEEEECCCCCCCCCCEEEEEE
T ss_conf             77987889999999984898886789999999982-68-99718999715777763677457773668898887079999


Q ss_pred             EECC---CCCCCHHHHHHH--HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHC---CCCCCCHHHHCCCCCCC
Q ss_conf             5067---543303567543--332102454001356787643101345625664456531---67642001100011100
Q 537021.9.peg.4  142 ATTE---IRKIPITVLSRC--QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARA---SDGSARDGLSLLDQAIA  213 (369)
Q Consensus       142 ~t~~---~~~ll~TI~SRc--q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~---s~GslR~Al~lLeq~i~  213 (369)
                      +++-   |++++|-|.||-  +++.|.|-+.+++.+.+..-+..-+ -++++|+++.|+.   --|++|+||.+--+++-
T Consensus       416 IANTMDLPERL~~RVsSRLGltRltF~PYt~~QL~eII~sRL~~~~-~f~~dAIQl~ARKVAavSGDARRALdICRRAvE  494 (650)
T PTZ00112        416 ISNTMDLPYKMKPSCRSRLAFGRLVFSPYKYQQIEKVIKERLENCE-IIDHTALQLCARRVTNYSGDMRKALQICKLAFE  494 (650)
T ss_pred             EEECCCCCHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             8506786065666655522885004399899999999999862677-788789999988887503148999999999997


Q ss_pred             HHHC-CCCHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             0000-1210322000135677777888876301363346788
Q 537021.9.peg.4  214 RCND-KIVTSSVRLMLALADRNRIMDLFGYLIKGDIINVLQE  254 (369)
Q Consensus       214 ~~~~-~i~~e~v~~llg~~~~~~i~~Ll~ai~~~d~~~al~~  254 (369)
                      ..++ +|+..+            +......+++.-...++..
T Consensus       495 ~~~~~ki~~~~------------i~~a~n~~~ns~~~~al~~  524 (650)
T PTZ00112        495 NKNGGKITPRD------------MTRASNMVLDSPLTNALNY  524 (650)
T ss_pred             HCCCCEEEHHH------------HHHHHHHHHCCHHHHHHHH
T ss_conf             35687342489------------9999888854088999985


No 103
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.95  E-value=2e-08  Score=82.27  Aligned_cols=133  Identities=21%  Similarity=0.342  Sum_probs=87.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCC-------C-EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH--
Q ss_conf             92848999999999982876-------7-0620107879888899999999961468777886658789997799997--
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRI-------A-QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAII--   70 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~-------~-ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~--   70 (369)
                      ||||+++++.+.++|...|.       | -++||.||.|+|||.+|+++|+.|+-.....-  ..+ +..-..-..++  
T Consensus       567 ViGQd~AI~~I~~aI~~sraGL~dp~rP~GsFlf~GptGvGKTELAKaLAe~Lfg~~~~LI--riD-MSEy~E~hsvsrL  643 (852)
T TIGR03346       567 VVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMV--RID-MSEYMEKHSVARL  643 (852)
T ss_pred             HCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEE--EEC-HHHHCCHHHHHHH
T ss_conf             7170999999999999997188889997458998678877689999999999855852069--843-0443012247785


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC-----------CCCCE
Q ss_conf             7987782224533223345556655544565420465237751156648001678999997212-----------21114
Q 537021.9.peg.4   71 RGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP-----------PHVKF  139 (369)
Q Consensus        71 ~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp-----------~~~~f  139 (369)
                      -|+-|-++        |-++==.|.+.++.+||.    |+++||.|+=.++-+|.||-.|++--           .||++
T Consensus       644 iGaPPGYV--------Gy~egG~Lte~vr~~Pys----VvL~DEIEKAh~~V~~~lLQilD~G~ltD~~Gr~vdF~Ntii  711 (852)
T TIGR03346       644 IGAPPGYV--------GYEEGGQLTEAVRRKPYS----VVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVI  711 (852)
T ss_pred             CCCCCCCC--------CCCCCCEECHHHHHCCCE----EEEECCHHHHCHHHHHHHHHHHCCCEEECCCCCEEEEEEEEE
T ss_conf             58999767--------768787423989819887----998530543076899999988236743079998885355689


Q ss_pred             EEEECCCCC
Q ss_conf             665067543
Q 537021.9.peg.4  140 IFATTEIRK  148 (369)
Q Consensus       140 il~t~~~~~  148 (369)
                      |++++--.+
T Consensus       712 imTSN~Ga~  720 (852)
T TIGR03346       712 IMTSNLGSQ  720 (852)
T ss_pred             EEECCCCHH
T ss_conf             861540659


No 104
>PRK08903 hypothetical protein; Validated
Probab=98.94  E-value=1.4e-08  Score=83.51  Aligned_cols=192  Identities=17%  Similarity=0.212  Sum_probs=129.5

Q ss_pred             CCC-HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf             928-4899999999998287670620107879888899999999961468777886658789997799997798778222
Q 537021.9.peg.4    1 MIG-QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVE   79 (369)
Q Consensus         1 iiG-q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e   79 (369)
                      |+| ...++..+++......-...+.++||.|+|||-+..+.+....-.                         .+++.+
T Consensus        21 v~g~n~~~~~~l~~~~~~~~~~~~l~i~G~~G~GKTHLl~a~~~~~~~~-------------------------~~~~~y   75 (227)
T PRK08903         21 IAGENAELVTRLRELAAGPVADRFFYLWGEAGSGRSHLLQALVAAASEG-------------------------GKNARY   75 (227)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC-------------------------CCCEEE
T ss_conf             5777599999999887438878669998999998889999999999806-------------------------997499


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCC--CCCEEEEECCC-C--CCCHHHH
Q ss_conf             45332233455566555445654204652377511566480016789999972122--11146650675-4--3303567
Q 537021.9.peg.4   80 LDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPP--HVKFIFATTEI-R--KIPITVL  154 (369)
Q Consensus        80 ~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~--~~~fil~t~~~-~--~ll~TI~  154 (369)
                      +++.+.      -+..+   .   ....-+++||++|.+....+.+|..++.+--.  +.+++++++.| .  .+.|-++
T Consensus        76 l~~~~~------~~~~~---~---~~~~d~l~iDDi~~i~~~~q~~lF~l~N~~~~~~~~~ll~s~~~~p~~l~~~~DL~  143 (227)
T PRK08903         76 LDPASP------LLAFD---F---DPRAELYAVDDVERLDDAQQIALFNLFNRVRAHGKTALLVAGPAAPLALDVREDLR  143 (227)
T ss_pred             ECCCCC------HHHHH---H---HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHCCCCHHHH
T ss_conf             651104------57774---2---00189899964114895699999999999997299489971899712012008999


Q ss_pred             HHH---HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCH---HHCCCCHHHHHHCC
Q ss_conf             543---332102454001356787643101345625664456531676420011000111000---00012103220001
Q 537021.9.peg.4  155 SRC---QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIAR---CNDKIVTSSVRLML  228 (369)
Q Consensus       155 SRc---q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~---~~~~i~~e~v~~ll  228 (369)
                      ||.   ..+.+.+++.+.....|.+.+...|+.+++++++.|++...+|+|....+++++-.+   .+.+||..-+.+++
T Consensus       144 SRl~~gl~~~i~~pdde~~~~iL~~~a~~rgl~l~~~v~~yl~~r~~R~~~~L~~~l~~Ld~~sl~~kr~iTi~lvkevL  223 (227)
T PRK08903        144 TRLGWGLVYEVKPLSDEDKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRAVTLPLLREML  223 (227)
T ss_pred             HHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf             99938973899797999999999999996299998899999999834789999999999999999829999999999985


Q ss_pred             C
Q ss_conf             3
Q 537021.9.peg.4  229 A  229 (369)
Q Consensus       229 g  229 (369)
                      +
T Consensus       224 a  224 (227)
T PRK08903        224 A  224 (227)
T ss_pred             C
T ss_conf             5


No 105
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=98.93  E-value=4.6e-09  Score=86.96  Aligned_cols=90  Identities=22%  Similarity=0.421  Sum_probs=57.3

Q ss_pred             CEEEEECHHHCC------------CCHHHHHHHHHHHCC----------CCCCEEEE----ECCCCCCCHHHHHHHH-HH
Q ss_conf             237751156648------------001678999997212----------21114665----0675433035675433-32
Q 537021.9.peg.4  108 RVYIMDEVQMLS------------TAAFNGLLKTLEEPP----------PHVKFIFA----TTEIRKIPITVLSRCQ-RF  160 (369)
Q Consensus       108 kv~iid~a~~m~------------~~a~NaLLK~lEEPp----------~~~~fil~----t~~~~~ll~TI~SRcq-~~  160 (369)
                      =|++|||.|+..            ..-|-+|||.+|--.          .|.+||-.    ...|+.|+|-.+-|-- +.
T Consensus       250 GIVFIDEIDKIa~~~~~~g~DVS~EGVQrdLLpivEGt~V~tK~G~V~TdhILFIasGAFh~sKPSDLIPEl~GRlPv~v  329 (442)
T PRK05201        250 GIVFIDEIDKIAKRGEGSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVAKPSDLIPELQGRFPIRV  329 (442)
T ss_pred             CCEEECHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHCCCCEEEE
T ss_conf             70451146565303578898977330788878875388555677760255034550450014782022498717550588


Q ss_pred             HCCCCCCHHHHHHHHH-----------HHHHCCC--CCCHHHHHHHHHCC
Q ss_conf             1024540013567876-----------4310134--56256644565316
Q 537021.9.peg.4  161 DLHRISIGDLIELFTK-----------ILQEESI--EFDPEAVAMIARAS  197 (369)
Q Consensus       161 ~f~~l~~~~i~~~L~~-----------i~~~E~i--~~d~~~l~~ia~~s  197 (369)
                      .+.+++.+++...|.+           .+..||+  .++++|+..||+.|
T Consensus       330 ~L~~L~~~dl~~ILtepknsL~kQy~~Lf~~egv~L~Ft~~Al~~IA~~A  379 (442)
T PRK05201        330 ELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIA  379 (442)
T ss_pred             ECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHH
T ss_conf             82449999999996786157899999998624967998479999999999


No 106
>PRK06893 DNA replication initiation factor; Validated
Probab=98.91  E-value=3e-08  Score=81.00  Aligned_cols=195  Identities=12%  Similarity=0.180  Sum_probs=125.4

Q ss_pred             CCH-HHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             284-8999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    2 IGQ-KPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         2 iGq-~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      +|+ ..++..|++...+-.=++ +.++||+|+|||-+..++...........                         +.+
T Consensus        20 ~~~n~~~~~~l~~~~~~~~~~~-l~i~G~~gsGKTHLLqa~~~~~~~~~~~~-------------------------~yi   73 (229)
T PRK06893         20 SDNNLLLLDSLRKNFIDLKQPF-FYIWGGKSSGKSHLLKAVSNHYLLNQRTA-------------------------IYI   73 (229)
T ss_pred             CCCHHHHHHHHHHHCCCCCCCE-EEEECCCCCCHHHHHHHHHHHHHHHCCCE-------------------------EEE
T ss_conf             6874999999997550246987-99989999988999999999999718985-------------------------999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHC--CCCHHHHHHHHHHHCC-CCCCEEEEE-CC-CCC---CCHH
Q ss_conf             53322334555665554456542046523775115664--8001678999997212-211146650-67-543---3035
Q 537021.9.peg.4   81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQML--STAAFNGLLKTLEEPP-PHVKFIFAT-TE-IRK---IPIT  152 (369)
Q Consensus        81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m--~~~a~NaLLK~lEEPp-~~~~fil~t-~~-~~~---ll~T  152 (369)
                      +...  ..+-..++.+.+      ...-+++||+.|.+  ..+.+.+|..++-+-- .+..+++++ .. |..   .+|-
T Consensus        74 ~~~~--~~~~~~~~l~~l------~~~d~l~iDDi~~i~g~~~~e~~lF~l~N~l~~~~~~~ll~ss~~~p~~l~~~l~D  145 (229)
T PRK06893         74 PLSK--SQYFSPAVLENL------EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKESGKTLLLISANQSPHALQIKLPD  145 (229)
T ss_pred             EHHH--HHHCCHHHHHHH------HHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCHHHH
T ss_conf             7377--564069999876------54797999672342488389999999999999759917998579883322100267


Q ss_pred             HHHHH---HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCC---CHHHCCCCHHHHHH
Q ss_conf             67543---3321024540013567876431013456256644565316764200110001110---00000121032200
Q 537021.9.peg.4  153 VLSRC---QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAI---ARCNDKIVTSSVRL  226 (369)
Q Consensus       153 I~SRc---q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i---~~~~~~i~~e~v~~  226 (369)
                      ++||.   ..+.+.++++++....|.+.+...|+.+++++++.|++....|+|....+++++-   .....++|..-|.+
T Consensus       146 L~SRl~~~~~~~i~~~dd~~~~~iL~~~a~~rgl~l~~~v~~yl~~r~~R~~~~l~~~l~~Ld~~sl~~kr~iTiplvke  225 (229)
T PRK06893        146 LASRLTWGEIYQLNDLTDEQKIEVLQRNAYQRGIELSDETANFLLKRLDRDMHTLFDALDLLDKASLQAQRKLTIPFVKE  225 (229)
T ss_pred             HHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             99999688369966777579999999999964999998999999998347899999999999999998089999999999


Q ss_pred             CCCC
Q ss_conf             0135
Q 537021.9.peg.4  227 MLAL  230 (369)
Q Consensus       227 llg~  230 (369)
                      ++|+
T Consensus       226 vL~l  229 (229)
T PRK06893        226 ILGL  229 (229)
T ss_pred             HHCC
T ss_conf             8683


No 107
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=98.91  E-value=1.5e-08  Score=83.23  Aligned_cols=193  Identities=15%  Similarity=0.236  Sum_probs=116.1

Q ss_pred             CCC--HHHHHHHHHHHHHC-CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf             928--48999999999982-876706201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4    1 MIG--QKPMIKTLTNAFKS-GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV   77 (369)
Q Consensus         1 iiG--q~~~~~~l~~~~~~-~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~   77 (369)
                      +||  ++.+.+......+. |.--..+.++||+|+|||-+..+.+....-..+.....    +   -++..+... .   
T Consensus        11 ~vg~~N~~a~~~~~~i~~~~~~~~npl~i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~----y---l~~~~~~~~-~---   79 (219)
T pfam00308        11 VIGSSNRFAHAAALAVAEAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALRNFPNLRVV----Y---LTSEEFLND-F---   79 (219)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEE----E---EEHHHHHHH-H---
T ss_conf             2368389999999999967587678269988999988899999999999849998288----8---439999998-8---


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC--CCHHHHHHHHHHHCC-CCCCEEEEECC-CC---CCC
Q ss_conf             224533223345556655544565420465237751156648--001678999997212-21114665067-54---330
Q 537021.9.peg.4   78 VELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS--TAAFNGLLKTLEEPP-PHVKFIFATTE-IR---KIP  150 (369)
Q Consensus        78 ~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~--~~a~NaLLK~lEEPp-~~~~fil~t~~-~~---~ll  150 (369)
                        +++.....+.+.|+         .-....+++||++|.+.  ...+.+|.-++..-- .+...++++.. |.   .++
T Consensus        80 --~~~l~~~~~~~f~~---------~l~~~d~l~iDDi~~l~~~~~~ee~lf~l~N~~~~~~~~lllts~~~p~~l~~~~  148 (219)
T pfam00308        80 --VDALRDNKIEAFKK---------SYRNVDLLLIDDIQFLAGKEKTQEEFFHTFNALHENNKQIVLTSDRPPKELEGFE  148 (219)
T ss_pred             --HHHHHCCCHHHHHH---------HHHHCCHHHHCCHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC
T ss_conf             --99998188889999---------9763233652236765686478999999999999729869997799810024532


Q ss_pred             HHHHHHH---HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHH
Q ss_conf             3567543---3321024540013567876431013456256644565316764200110001110000
Q 537021.9.peg.4  151 ITVLSRC---QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARC  215 (369)
Q Consensus       151 ~TI~SRc---q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~  215 (369)
                      +-.+||.   ..+.+.++++++....|.+.+...|+.+++++++.|++....|+|.-..+|+++-+++
T Consensus       149 ~dL~SRL~~g~~~~i~~pdd~~~~~iL~~~a~~r~l~l~~~v~~yl~~r~~R~~r~L~~~L~~L~~~~  216 (219)
T pfam00308       149 DRLRSRFEWGLIIAIEPPDLETRLAILRKKAEEENINIPNEVLNFIAQRITDNVRELEGALNRLLAFA  216 (219)
T ss_pred             HHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             77999986875661169999999999999999849999999999999842798999999999999855


No 108
>KOG0730 consensus
Probab=98.88  E-value=4.1e-08  Score=80.01  Aligned_cols=28  Identities=29%  Similarity=0.456  Sum_probs=16.4

Q ss_pred             CCCEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             7670620107879888899999999961
Q 537021.9.peg.4   19 RIAQSYMLSGTRGIGKTTTARIIARSLN   46 (369)
Q Consensus        19 ~~~ha~lf~G~~G~GK~~~a~~~A~~l~   46 (369)
                      +.|--.|.+||+|+||+.+++++|+.-.
T Consensus       216 ~~prg~Ll~gppg~Gkt~l~~aVa~e~~  243 (693)
T KOG0730         216 KPPRGLLLYGPPGTGKTFLVRAVANEYG  243 (693)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             9998744438999981899999999737


No 109
>KOG2004 consensus
Probab=98.88  E-value=1.7e-08  Score=82.76  Aligned_cols=172  Identities=24%  Similarity=0.403  Sum_probs=107.1

Q ss_pred             CHHHHHHHHHHHHHCCCC-----CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf             848999999999982876-----706201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4    3 GQKPMIKTLTNAFKSGRI-----AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV   77 (369)
Q Consensus         3 Gq~~~~~~l~~~~~~~~~-----~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~   77 (369)
                      |=+++++.+-.++.-+++     +.-+-|+||||+|||++|+-.|++||-+--.                 ++-|.--|+
T Consensus       415 gm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfR-----------------fSvGG~tDv  477 (906)
T KOG2004         415 GMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFR-----------------FSVGGMTDV  477 (906)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCEEE-----------------EECCCCCCH
T ss_conf             168899999999998751466788379986899877321899999984874699-----------------853663427


Q ss_pred             CCCCCCCCCCHHHH-HHHHHHHHHHHHCCCCCEEEEECHHHCCC----CHHHHHHHHHHHCCCC----------------
Q ss_conf             22453322334555-66555445654204652377511566480----0167899999721221----------------
Q 537021.9.peg.4   78 VELDAASHTSIDDV-REIIDQIYYKPISARFRVYIMDEVQMLST----AAFNGLLKTLEEPPPH----------------  136 (369)
Q Consensus        78 ~e~~~~s~~~id~i-r~l~~~~~~~p~~~~~kv~iid~a~~m~~----~a~NaLLK~lEEPp~~----------------  136 (369)
                      -||-|--.+=|.-+ -.+++-+  +...-..-+++|||+|++-.    +-+-|||-.|. |-.|                
T Consensus       478 AeIkGHRRTYVGAMPGkiIq~L--K~v~t~NPliLiDEvDKlG~g~qGDPasALLElLD-PEQNanFlDHYLdVp~DLSk  554 (906)
T KOG2004         478 AEIKGHRRTYVGAMPGKIIQCL--KKVKTENPLILIDEVDKLGSGHQGDPASALLELLD-PEQNANFLDHYLDVPVDLSK  554 (906)
T ss_pred             HHHCCCCEEEECCCCHHHHHHH--HHHCCCCCEEEEEHHHHHCCCCCCCHHHHHHHHCC-HHHCCCHHHHCCCCCCCHHH
T ss_conf             7642542110014884899999--86177886588532234178877986899987439-65355345420266421110


Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHH----HHHHH-HH-----HHHCCCCCCHHHHHHHH
Q ss_conf             1146650675433035675433321024540013----56787-64-----31013456256644565
Q 537021.9.peg.4  137 VKFIFATTEIRKIPITVLSRCQRFDLHRISIGDL----IELFT-KI-----LQEESIEFDPEAVAMIA  194 (369)
Q Consensus       137 ~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i----~~~L~-~i-----~~~E~i~~d~~~l~~ia  194 (369)
                      |+||-+++..+.|+|+++-|.-++.+.-...++=    .+||. +.     +..|.++++++++..+.
T Consensus       555 VLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI  622 (906)
T KOG2004         555 VLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALI  622 (906)
T ss_pred             EEEEEECCCCCCCCHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHH
T ss_conf             68898536445698566412232203672279899999984125789874998786586299999999


No 110
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=98.87  E-value=1.2e-09  Score=91.36  Aligned_cols=95  Identities=20%  Similarity=0.288  Sum_probs=61.7

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH--HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             62010787988889999999996146877788665878999779999--7798778222453322334555665554456
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAI--IRGNHVDVVELDAASHTSIDDVREIIDQIYY  100 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i--~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~  100 (369)
                      .+||.||+|+|||.+|+++|+.|+.......   .--|+.-..-..+  .-|+.|        +..+.++--.+.+.+..
T Consensus         5 ~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i---~~dm~e~~~~~~v~~l~g~~~--------gyvg~~~~G~l~~~v~~   73 (168)
T pfam07724         5 SFLFLGPTGVGKTELAKALAELLFGDERALI---RIDMSEYMEEHSVSRLIGAPP--------GYVGYEEGGQLTEAVRR   73 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCCCEE---EECCCCCCCHHHHHHHCCCCC--------CCCCCCCCCCHHHHHHH
T ss_conf             9998898998999999999999679853448---855756542569998705899--------87262426507899983


Q ss_pred             HHHCCCCCEEEEECHHHCCCCHHHHHHHHHHH
Q ss_conf             54204652377511566480016789999972
Q 537021.9.peg.4  101 KPISARFRVYIMDEVQMLSTAAFNGLLKTLEE  132 (369)
Q Consensus       101 ~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEE  132 (369)
                      .|    |-|++|||.|+...+.+|+||+.||+
T Consensus        74 ~p----~~VillDEIeKa~~~V~~~LL~ild~  101 (168)
T pfam07724        74 KP----YSIVLIDEIEKAHPGVQNDLLQILEG  101 (168)
T ss_pred             CC----CCEEEEHHHHHHCHHHHHHHHHHCCC
T ss_conf             89----84898657766589999999987058


No 111
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.87  E-value=8.6e-08  Score=77.61  Aligned_cols=194  Identities=22%  Similarity=0.372  Sum_probs=111.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCC---------CC-CCCCCCC--CCCCCHHH--
Q ss_conf             9284899999999998287670620107879888899999999961468---------77-7886658--78999779--
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKT---------AH-IDVPTVE--FEGFGEHC--   66 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~---------~~-~~~~~~~--~c~~c~~c--   66 (369)
                      ||||+++++..+.+.++.|  | .|+-||||+||+.+|++++..|--+.         +. ...|.+.  |-|..+.-  
T Consensus        33 VIGQe~Av~~i~~Aa~qrr--h-vlliG~PGtGKSmlakam~elLpk~~ledilv~pNp~d~~~P~v~~vpag~g~~iv~  109 (637)
T PRK13765         33 VIGQEHAVEVIKKAAKQRR--H-VMLIGSPGTGKSMLAKAMAELLPKEELQDILVYPNPEDPNNPKIRTVPAGKGKEIVE  109 (637)
T ss_pred             CCCHHHHHHHHHHHHHHHC--C-EEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCEEEEECCCCCHHHHH
T ss_conf             4571999999999998437--3-898689998799999999975798865627996798888898057416875136899


Q ss_pred             --HHHHCCCCC--CC--C--------------------------------CCCCCC----------CC---C---HH---
Q ss_conf             --999779877--82--2--------------------------------245332----------23---3---45---
Q 537021.9.peg.4   67 --QAIIRGNHV--DV--V--------------------------------ELDAAS----------HT---S---ID---   89 (369)
Q Consensus        67 --~~i~~~~~~--d~--~--------------------------------e~~~~s----------~~---~---id---   89 (369)
                        +.-......  +.  .                                ...+..          |.   +   ||   
T Consensus       110 ~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~pkllv~~~~~~~aPfvdAtg  189 (637)
T PRK13765        110 AHKEEARKKAQMRNFLMMIIILGIIGYAFITAQVLLMGIIAAALIYMALRYVMPKEDAMVPKLLVSNSDKKTAPFVDATG  189 (637)
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCEECCCC
T ss_conf             99998763101336679999999999999998999999999999999998762355355764012477777898330787


Q ss_pred             -HHHHHHHHHHHHHHCC-------------------CCCEEEEECHHHCCCCHHHHHHHHHHHC----------------
Q ss_conf             -5566555445654204-------------------6523775115664800167899999721----------------
Q 537021.9.peg.4   90 -DVREIIDQIYYKPISA-------------------RFRVYIMDEVQMLSTAAFNGLLKTLEEP----------------  133 (369)
Q Consensus        90 -~ir~l~~~~~~~p~~~-------------------~~kv~iid~a~~m~~~a~NaLLK~lEEP----------------  133 (369)
                       ....|..++..-|+++                   ..=|.+||+...|...+|++||+.|+|-                
T Consensus       190 a~a~aLlGdVrHdP~qsGGlgTPah~Rv~aGAiHkA~gGvL~IDei~~L~~~~q~~Ll~alq~~k~~I~g~~e~SsgA~v  269 (637)
T PRK13765        190 AHAGALLGDVRHDPFQSGGLETPAHERVEAGAIHKAHKGVLFIDEINTLRLESQQSLLTAMQEKKYPITGQSERSSGAMV  269 (637)
T ss_pred             CCHHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHCCCCEEEEEHHHHCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCC
T ss_conf             44466517742486334898999610002661211358569984456479889999999996591532368866677625


Q ss_pred             -----CCCCCEEEEEC--CCCCCCHHHHHHHHHHH----CCCC---CCH---HHHHHHHHHHHHCC-CC-CCHHHHHHHH
Q ss_conf             -----22111466506--75433035675433321----0245---400---13567876431013-45-6256644565
Q 537021.9.peg.4  134 -----PPHVKFIFATT--EIRKIPITVLSRCQRFD----LHRI---SIG---DLIELFTKILQEES-IE-FDPEAVAMIA  194 (369)
Q Consensus       134 -----p~~~~fil~t~--~~~~ll~TI~SRcq~~~----f~~l---~~~---~i~~~L~~i~~~E~-i~-~d~~~l~~ia  194 (369)
                           |-..++|++++  .++.+.|..||||+-|.    |+.-   +++   .+.+++.+-+...| +. ++.++...|.
T Consensus       270 ~tepvP~Df~lV~aGn~d~~~~m~palrsri~g~gyev~~~~~m~dt~enr~k~arfiaqev~~dg~iPhfdr~AVaeII  349 (637)
T PRK13765        270 RTEPVPCDFIMVAAGNLDAIENMHPALRSRIRGYGYEVYMNDTMEDTPENRKKLVRFVAQEVKRDGKIPHFDREAVEEII  349 (637)
T ss_pred             CCCCCCEEEEEEEECCHHHHHHCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf             78986613699995372766643998886510477499823567787889999999999999743888999989999999


Q ss_pred             HCC
Q ss_conf             316
Q 537021.9.peg.4  195 RAS  197 (369)
Q Consensus       195 ~~s  197 (369)
                      +.+
T Consensus       350 ~eA  352 (637)
T PRK13765        350 REA  352 (637)
T ss_pred             HHH
T ss_conf             999


No 112
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.87  E-value=5.5e-08  Score=79.05  Aligned_cols=152  Identities=22%  Similarity=0.322  Sum_probs=95.1

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHH-------CCCCCCCCCCCCCCCCCCHHHHH-HHCC
Q ss_conf             928489999999999828767062010787988889999999996-------14687778866587899977999-9779
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSL-------NYKTAHIDVPTVEFEGFGEHCQA-IIRG   72 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l-------~c~~~~~~~~~~~~c~~c~~c~~-i~~~   72 (369)
                      ||||+.++..|.=+..+.+++| .|+.|++|+||||++|.||..|       +|.-+-...   .|-..|+.|.. +..+
T Consensus        14 IvGQe~~k~aLll~av~p~iGg-VLi~G~~GtgKStlvRala~lLP~i~~v~~~~f~~~p~---~p~~~~~~~~~~~~~~   89 (347)
T CHL00081         14 IVGQEEMKLALLLNVIDPKIGG-VMIMGDRGTGKSTTIRALVDLLPEIEVVKNDPFNSDPR---DPDLMSDEVRERIRNG   89 (347)
T ss_pred             HCCHHHHHHHHHHHHCCCCCCE-EEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCC---CCCCCCHHHHHHHCCC
T ss_conf             5384999999999825788786-99878998749999999998578742206887678989---8100242666543146


Q ss_pred             CCCC-------CCCC-CCCCC----CCHHHHHHHHHH-HHHHH---HCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf             8778-------2224-53322----334555665554-45654---2046523775115664800167899999721221
Q 537021.9.peg.4   73 NHVD-------VVEL-DAASH----TSIDDVREIIDQ-IYYKP---ISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPH  136 (369)
Q Consensus        73 ~~~d-------~~e~-~~~s~----~~id~ir~l~~~-~~~~p---~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~  136 (369)
                      ...-       ++++ -+++.    .++|--+.+.+- ..+.|   .++.+-|..+||+..+...-+|+||-.+++- .+
T Consensus        90 ~~~~~~~~~~p~v~lPlgaTEDrv~GslDie~al~~G~~~f~pGlLa~A~rGiLyvDEINll~d~~v~~LLda~a~G-~~  168 (347)
T CHL00081         90 EKIPTKKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSAASG-WN  168 (347)
T ss_pred             CCCCCEECCCCEEECCCCCCCCEECCCHHHHHHHHCCCCCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCC-EE
T ss_conf             66752114686253688885230114000998984587115653122203885886145432379999999998558-08


Q ss_pred             ------------CCEEEEE-CCCC--CCCHHHHHHH
Q ss_conf             ------------1146650-6754--3303567543
Q 537021.9.peg.4  137 ------------VKFIFAT-TEIR--KIPITVLSRC  157 (369)
Q Consensus       137 ------------~~fil~t-~~~~--~ll~TI~SRc  157 (369)
                                  +.|++++ -||+  .|.|-+.=|-
T Consensus       169 ~VEReG~S~~~Pa~F~liaT~NPeEgeLrp~llDRF  204 (347)
T CHL00081        169 TVEREGISIRHPARFVLIGSGNPEEGELRPQLLDRF  204 (347)
T ss_pred             EECCCCEEECCCCCEEEEECCCCCCCCCCHHHHHHE
T ss_conf             980464233057500688557865567488888263


No 113
>KOG1051 consensus
Probab=98.86  E-value=7.6e-09  Score=85.36  Aligned_cols=132  Identities=18%  Similarity=0.292  Sum_probs=89.8

Q ss_pred             CCCHHHHHHHHHHHHHCCC-------CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf             9284899999999998287-------670620107879888899999999961468777886658789997799997798
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGR-------IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGN   73 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~-------~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~   73 (369)
                      |+||+.++..+..+|..-|       -.-.+||.||.|+|||-+|+++|..+.-.....-  .+       .+..+..  
T Consensus       564 V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~I--ri-------Dmse~~e--  632 (898)
T KOG1051         564 VIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFI--RL-------DMSEFQE--  632 (898)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEE--EE-------CHHHHHH--
T ss_conf             466377899999999843203578888858999788841389999999999728864268--96-------1455555--


Q ss_pred             CCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC-----------CCCCEE
Q ss_conf             7782224533--223345556655544565420465237751156648001678999997212-----------211146
Q 537021.9.peg.4   74 HVDVVELDAA--SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP-----------PHVKFI  140 (369)
Q Consensus        74 ~~d~~e~~~~--s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp-----------~~~~fi  140 (369)
                         +-...++  +-.|-++.-.|.+.++.+|+.    |++|||+|.=-..-+|.||..+|+--           .||+||
T Consensus       633 ---vskligsp~gyvG~e~gg~LteavrrrP~s----VvLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~I  705 (898)
T KOG1051         633 ---VSKLIGSPPGYVGKEEGGQLTEAVKRRPYS----VVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFI  705 (898)
T ss_pred             ---HHHCCCCCCCCCCCHHHHHHHHHHHCCCCE----EEEEECHHHCCHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEE
T ss_conf             ---653048995554630577888997169965----9998302222888999999998627400588867504645999


Q ss_pred             EEECCCCCCC
Q ss_conf             6506754330
Q 537021.9.peg.4  141 FATTEIRKIP  150 (369)
Q Consensus       141 l~t~~~~~ll  150 (369)
                      ++++--...+
T Consensus       706 MTsn~~~~~i  715 (898)
T KOG1051         706 MTSNVGSSAI  715 (898)
T ss_pred             EECCCCHHHH
T ss_conf             9426316666


No 114
>PRK05907 hypothetical protein; Provisional
Probab=98.83  E-value=1.3e-06  Score=68.92  Aligned_cols=244  Identities=17%  Similarity=0.207  Sum_probs=167.5

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCC-CCEEEEECC-----C-CCCCHHHHHHHHHHHCC
Q ss_conf             5665554456542046523775115664800167899999721221-114665067-----5-43303567543332102
Q 537021.9.peg.4   91 VREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPH-VKFIFATTE-----I-RKIPITVLSRCQRFDLH  163 (369)
Q Consensus        91 ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~-~~fil~t~~-----~-~~ll~TI~SRcq~~~f~  163 (369)
                      +.++..+.---..-+.+.|+-|-.||+|+.+...-|-.----|.++ |+|+++|+.     . .+++..   =|.-+.=.
T Consensus        54 ~~~l~~wte~~glFaS~evi~I~q~ekls~~~refL~~Yar~P~p~Ltl~lfttk~~~f~sL~kkl~sA---~~lslfge  130 (311)
T PRK05907         54 IQELLSWTETFGLFASKETIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTTKQECFSSLSKKLPSA---LCLSLFGE  130 (311)
T ss_pred             HHHHHHHHHHHCCCCCCCEEEEHHHHHHCHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHCCHH---HHHHHHCC
T ss_conf             999988898622412230100031974135489999998439998579986111589999999865121---21687344


Q ss_pred             CCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHH-HCCCCCCCHHHHCCCCCCCHHHCC--CCHHHHHHCCCCCCHHHHHH
Q ss_conf             454--0013567876431013456256644565-316764200110001110000001--21032200013567777788
Q 537021.9.peg.4  164 RIS--IGDLIELFTKILQEESIEFDPEAVAMIA-RASDGSARDGLSLLDQAIARCNDK--IVTSSVRLMLALADRNRIMD  238 (369)
Q Consensus       164 ~l~--~~~i~~~L~~i~~~E~i~~d~~~l~~ia-~~s~GslR~Al~lLeq~i~~~~~~--i~~e~v~~llg~~~~~~i~~  238 (369)
                      -+.  +.-|.+.|.+-+..+|++.+-.+..+.+ .+.++++-.-++-+++++-+-+++  +++.++...+.......+|+
T Consensus       131 ~~~drekri~~~liqrA~~~g~Scsl~~Aslfvkkfpqt~~~~ll~Ef~KLlC~vG~k~sle~sDIqsfv~kke~~SlWk  210 (311)
T PRK05907        131 WFADRDKRIAQLLIQRAELLGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKQSLEASDIQSFVVKKEQASLWK  210 (311)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHH
T ss_conf             65678889999999899985667507899999997666647789999999998846854001887999995562128998


Q ss_pred             HHHHHHCCCHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             887630136334678876543-0476213578777534899999974574122344998899999999862998999999
Q 537021.9.peg.4  239 LFGYLIKGDIINVLQEFSSQY-DSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRF  317 (369)
Q Consensus       239 Ll~ai~~~d~~~al~~l~~l~-~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~  317 (369)
                      +-++++.+|..+.......+. +.|.||..++..+-+.+-.=++.  ..+..         .+.-..+..-++.+.+...
T Consensus       211 LrDAllqRd~~~~~~ll~aLl~d~GedpL~li~flRsQ~lygLrS--i~e~~---------~erk~~~f~AyG~erl~q~  279 (311)
T PRK05907        211 LRDALLRRDPVEGHSLLRSLLSDMGEDPLGIINFLRSQCLYGLRS--IEEQS---------KERKHRIFVAYGKERLLQA  279 (311)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH--HHHHH---------CCCHHHHHHHHCHHHHHHH
T ss_conf             888998138588999999999866998089999999999987678--99861---------5311279998468999999


Q ss_pred             HHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Q ss_conf             999999999830278-8899999999999533
Q 537021.9.peg.4  318 WQMILKGISEIEGFS-RPMEAVEMVLIRLAHA  348 (369)
Q Consensus       318 lq~l~~a~~~Lk~n~-np~L~lE~lLlkL~~~  348 (369)
                      +..+..++.-++.|+ +|-+++|.+++||.+.
T Consensus       280 l~llf~aEsliKNn~qD~i~a~EtL~irmt~~  311 (311)
T PRK05907        280 LNLLFYAESLIKNNVQDPILAVETLVIRMTNL  311 (311)
T ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
T ss_conf             99999999998636877289999999987159


No 115
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461    Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=98.82  E-value=2.1e-08  Score=82.13  Aligned_cols=168  Identities=20%  Similarity=0.321  Sum_probs=115.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCC-CCCCC--
Q ss_conf             928489999999999828767062010787988889999999996146877788665878999779999779-87782--
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRG-NHVDV--   77 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~-~~~d~--   77 (369)
                      +||=+..++.--+-+-+.+=.. =||.|.||||||.+|.-||+.+                        ..+ .-|..  
T Consensus       210 LIGRE~EleRtiQvLCRR~KNN-Pl~VGEPGVGKTAI~EGLA~~I------------------------~~~~kvPe~Lk  264 (774)
T TIGR02639       210 LIGREDELERTIQVLCRRKKNN-PLLVGEPGVGKTAIVEGLAQRI------------------------AEGQKVPEVLK  264 (774)
T ss_pred             CCCCHHHHHHHHHHHCCCCCCC-CCEECCCCCCHHHHHHHHHHHH------------------------HCCCCCCHHHC
T ss_conf             3456688742333203456788-7204488864489999999986------------------------41564670024


Q ss_pred             ----CCCCC----CC--CCC-H-HHHHHHHHHHHHHHHCCCCC-EEEEECHHHC---------CCCHHHHHHHHHHHCCC
Q ss_conf             ----22453----32--233-4-55566555445654204652-3775115664---------80016789999972122
Q 537021.9.peg.4   78 ----VELDA----AS--HTS-I-DDVREIIDQIYYKPISARFR-VYIMDEVQML---------STAAFNGLLKTLEEPPP  135 (369)
Q Consensus        78 ----~e~~~----~s--~~~-i-d~ir~l~~~~~~~p~~~~~k-v~iid~a~~m---------~~~a~NaLLK~lEEPp~  135 (369)
                          +-+|=    |+  =+| . +-++++++.++-.|    -. |..|||.|+.         +.+|+|=|=-.|..  .
T Consensus       265 n~~IY~LDmG~LLAGTKYRGDFE~RLK~V~~Ei~~~~----~anILFIDEIHTIVGAGATSGGsmDASNLLKPaL~~--G  338 (774)
T TIGR02639       265 NAKIYSLDMGTLLAGTKYRGDFEERLKAVVSEIEKEP----NANILFIDEIHTIVGAGATSGGSMDASNLLKPALAS--G  338 (774)
T ss_pred             CCCEEEECHHHHHHHCCCCCHHHHHHHHHHHHHHCCC----CCCEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHC--C
T ss_conf             7834540434564102454247899999999985289----995466411010331787875155244321125307--8


Q ss_pred             CCCEEEEECCCC--CCC---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHHCCCC
Q ss_conf             111466506754--330---356754333210245400135678764310----1345625664456531676
Q 537021.9.peg.4  136 HVKFIFATTEIR--KIP---ITVLSRCQRFDLHRISIGDLIELFTKILQE----ESIEFDPEAVAMIARASDG  199 (369)
Q Consensus       136 ~~~fil~t~~~~--~ll---~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~----E~i~~d~~~l~~ia~~s~G  199 (369)
                      ...||-.||.-+  +.-   -.+-=|-|.++..=||.+|-.+-|+.+-.+    ++|.|++++++..|.+|.=
T Consensus       339 ~iRCIGsTTy~EY~~~FeKDrALsRRFQKIDv~EPs~eet~~ILkGLk~~YE~fH~V~Y~~eal~~Av~LS~r  411 (774)
T TIGR02639       339 KIRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEQYEEFHHVKYSDEALEAAVELSAR  411 (774)
T ss_pred             CEEEECCCCHHHHHCHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHH
T ss_conf             7786226524864111010202165423311795788899999986554201325011386999999999888


No 116
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.81  E-value=3.4e-08  Score=80.61  Aligned_cols=148  Identities=21%  Similarity=0.325  Sum_probs=91.1

Q ss_pred             CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC---C-C--CHHHHH
Q ss_conf             767062010787988889999999996146877788665878999779999779877822245332---2-3--345556
Q 537021.9.peg.4   19 RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAAS---H-T--SIDDVR   92 (369)
Q Consensus        19 ~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s---~-~--~id~ir   92 (369)
                      +.|...|++||||||||.+|++.|......                            ++.+|+..   . .  +=..+|
T Consensus       257 ~~PkGvLL~GpPG~GKtl~AKAvA~e~~~p----------------------------~l~l~~~~l~~~~vGesE~~~r  308 (491)
T CHL00195        257 PTPRGLLLVGIQGTGKSLTAKAIANEWNLP----------------------------LLRLDVGKLFGGIVGESESRMR  308 (491)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCC----------------------------EEEEEHHHHHHHHCCHHHHHHH
T ss_conf             999879997999987899999998663894----------------------------6996679975600670499999


Q ss_pred             HHHHHHH-HHHHCCCCCEEEEECHHHC-C-----------CCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHH--HH
Q ss_conf             6555445-6542046523775115664-8-----------001678999997212211146650675433035675--43
Q 537021.9.peg.4   93 EIIDQIY-YKPISARFRVYIMDEVQML-S-----------TAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLS--RC  157 (369)
Q Consensus        93 ~l~~~~~-~~p~~~~~kv~iid~a~~m-~-----------~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~S--Rc  157 (369)
                      ++...+. ..|     -|+.|||.|+. .           ..-.+.||.-|.|-...|++|-+||.|+.|+|.+.=  |-
T Consensus       309 ~~f~~A~~~aP-----~ilfiDEidk~~~~~~~~~d~g~s~rv~~~~Lt~m~e~~~~VfViattN~~~~L~pellR~GRF  383 (491)
T CHL00195        309 QMIQLAETISP-----CILWIDEIDKAFSGLDSKGDSGTSNRVLATFITWLSEKKSPVFVVATANNIDSLPLELLRKGRF  383 (491)
T ss_pred             HHHHHHHHHCC-----EEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHCCCCCC
T ss_conf             99999986198-----5899746545425888888872328999999998646899769999589975589877089877


Q ss_pred             HHHHCCCCCCHHHHHHHHHH-HHHCC-CCCCHHHHHHHHHCCCC
Q ss_conf             33210245400135678764-31013-45625664456531676
Q 537021.9.peg.4  158 QRFDLHRISIGDLIELFTKI-LQEES-IEFDPEAVAMIARASDG  199 (369)
Q Consensus       158 q~~~f~~l~~~~i~~~L~~i-~~~E~-i~~d~~~l~~ia~~s~G  199 (369)
                      -.+-|-++|..+-..-+-+| +.+-. ...++-.+..+|..++|
T Consensus       384 D~~~~v~lP~~~~R~~I~~ihl~~~~~~~~~~~d~~~la~~t~g  427 (491)
T CHL00195        384 DEIFFLDLPNLEERELIFKIHLKRFRPNSWQNYDIEILSQLTNK  427 (491)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCC
T ss_conf             70476489598999999999985447887554699999976859


No 117
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.80  E-value=1.9e-07  Score=75.03  Aligned_cols=194  Identities=14%  Similarity=0.175  Sum_probs=124.5

Q ss_pred             CCC-HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf             928-4899999999998287670620107879888899999999961468777886658789997799997798778222
Q 537021.9.peg.4    1 MIG-QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVE   79 (369)
Q Consensus         1 iiG-q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e   79 (369)
                      |+| .+.+...++.++.... ...+.++||+|+|||-+..+......-....                         +.+
T Consensus        25 i~g~n~~~~~al~~~~~~~~-~~~l~l~G~~G~GKTHLLqA~~~~~~~~~~~-------------------------~~y   78 (235)
T PRK08084         25 YPGDNDSLLAALQNVLRQEH-SGYIYLWGREGAGRSHLLHAACAELSQRGDA-------------------------VGY   78 (235)
T ss_pred             CCCCCHHHHHHHHHHHHCCC-CCEEEEECCCCCCHHHHHHHHHHHHHCCCCC-------------------------EEE
T ss_conf             44886999999999985789-8769998999988899999999999707985-------------------------799


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC--CCHHHHHHHHHHHCC--CCCCEEEEECCC-CC---CCH
Q ss_conf             4533223345556655544565420465237751156648--001678999997212--211146650675-43---303
Q 537021.9.peg.4   80 LDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS--TAAFNGLLKTLEEPP--PHVKFIFATTEI-RK---IPI  151 (369)
Q Consensus        80 ~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~--~~a~NaLLK~lEEPp--~~~~fil~t~~~-~~---ll~  151 (369)
                      +....  ..+-.-++.+.+.      ..-+++||++|.+.  ...+.+|-.++-+--  .++.+++++..+ ..   .+|
T Consensus        79 l~~~~--~~~~~~~~l~~l~------~~dll~iDDi~~i~g~~~~ee~lF~l~N~~~~~g~~~ll~ts~~~P~~l~~~l~  150 (235)
T PRK08084         79 VPLDK--RAWFVPEVLEGME------QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLP  150 (235)
T ss_pred             EEHHH--HHHHHHHHHHHHH------HCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCH
T ss_conf             87798--6651799998764------189899827455469978999999999999984896699967988243023128


Q ss_pred             HHHHHH---HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHH---HCCCCHHHHH
Q ss_conf             567543---3321024540013567876431013456256644565316764200110001110000---0012103220
Q 537021.9.peg.4  152 TVLSRC---QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARC---NDKIVTSSVR  225 (369)
Q Consensus       152 TI~SRc---q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~---~~~i~~e~v~  225 (369)
                      =++||.   ..+.+.+++.++..+.|.+.+...|+.++++.++.|++....|+|....+++++-.++   ..++|..-+.
T Consensus       151 DL~SRl~~g~~~~i~~~dde~~~~iL~~~a~~rgl~l~~~V~~yl~~~~~R~~~~L~~~l~~Ld~~Sl~~kr~iTip~vk  230 (235)
T PRK08084        151 DLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDKASITAQRKLTIPFVK  230 (235)
T ss_pred             HHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf             89999956972785599989999999999997399999899999998615889999999999999999819999999999


Q ss_pred             HCC
Q ss_conf             001
Q 537021.9.peg.4  226 LML  228 (369)
Q Consensus       226 ~ll  228 (369)
                      +++
T Consensus       231 evL  233 (235)
T PRK08084        231 EIL  233 (235)
T ss_pred             HHH
T ss_conf             996


No 118
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232   Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=98.80  E-value=5e-08  Score=79.36  Aligned_cols=149  Identities=22%  Similarity=0.412  Sum_probs=106.6

Q ss_pred             HCCCC-CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC---C-C--CH
Q ss_conf             82876-7062010787988889999999996146877788665878999779999779877822245332---2-3--34
Q 537021.9.peg.4   16 KSGRI-AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAAS---H-T--SI   88 (369)
Q Consensus        16 ~~~~~-~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s---~-~--~i   88 (369)
                      +.++. =| .+|.|-|||||||.||++|+-+ .+=+                  |....|  ++|++=|.   . |  .-
T Consensus        37 k~~~~~LH-MiFKGNPGTGKTTVAR~~gklf-~emn------------------vL~KGH--~iE~ERADLVGEYIGHTA   94 (261)
T TIGR02881        37 KTSKQVLH-MIFKGNPGTGKTTVARLLGKLF-KEMN------------------VLSKGH--LIEVERADLVGEYIGHTA   94 (261)
T ss_pred             CCCCCEEE-EEEECCCCCCHHHHHHHHHHHH-HHCC------------------CCCCCC--EEEEEECCCCCCCCCCHH
T ss_conf             14884478-7742786684389999999998-5337------------------567886--788762221223203004


Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECHHHCC--------CCHHHHHHHHHHHCCCCCCEEEEECC--CC---CCCHHHHH
Q ss_conf             5556655544565420465237751156648--------00167899999721221114665067--54---33035675
Q 537021.9.peg.4   89 DDVREIIDQIYYKPISARFRVYIMDEVQMLS--------TAAFNGLLKTLEEPPPHVKFIFATTE--IR---KIPITVLS  155 (369)
Q Consensus        89 d~ir~l~~~~~~~p~~~~~kv~iid~a~~m~--------~~a~NaLLK~lEEPp~~~~fil~t~~--~~---~ll~TI~S  155 (369)
                      ...|+++..+     .|+  |.+||||=.|.        ++|-+.|-|-+|+....-+.||+.=.  -+   .+-|=++|
T Consensus        95 qkTRe~~kkA-----~GG--vLFiDEAYSLaRGGEKDFGKEAIDtLVK~mEd~~~~lvlILAGY~~EM~yFL~~NPGL~S  167 (261)
T TIGR02881        95 QKTREVIKKA-----LGG--VLFIDEAYSLARGGEKDFGKEAIDTLVKAMEDQRNELVLILAGYSDEMDYFLSLNPGLRS  167 (261)
T ss_pred             HHHHHHHHHH-----CCC--CHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCC
T ss_conf             8999999986-----388--005577777614888876620888999987615698689970876899998620779777


Q ss_pred             HH-HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             43-332102454001356787643101345625664456
Q 537021.9.peg.4  156 RC-QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMI  193 (369)
Q Consensus       156 Rc-q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~i  193 (369)
                      |- -.+.|+--+.+++.+-.+..+++-.+.++++|...+
T Consensus       168 RFPi~i~FPdY~~eeL~~Ia~~m~~~ReY~Lt~~A~~~l  206 (261)
T TIGR02881       168 RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKL  206 (261)
T ss_pred             CCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             665054188998889999999998646422578899999


No 119
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.80  E-value=4.7e-08  Score=79.54  Aligned_cols=144  Identities=24%  Similarity=0.311  Sum_probs=90.6

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      ++|++.++...-.++..|+  | .||.||||+|||++|+.+|+.++-.-...      .|             +||+..-
T Consensus        26 ~~g~~~~~~~~l~a~~~~~--~-vll~G~PG~gKT~la~~lA~~l~~~~~~i------~~-------------t~~l~p~   83 (329)
T COG0714          26 VVGDEEVIELALLALLAGG--H-VLLEGPPGVGKTLLARALARALGLPFVRI------QC-------------TPDLLPS   83 (329)
T ss_pred             CCCCHHHHHHHHHHHHCCC--C-EEEECCCCCCHHHHHHHHHHHHCCCCEEE------EC-------------CCCCCHH
T ss_conf             5266999999999998599--7-78779898777999999999838981899------56-------------8998888


Q ss_pred             CCCCCCCHHHHHHH---HHHHHHHHHCCCC---CEEEEECHHHCCCCHHHHHHHHHHH----------CCCCCCE-EEEE
Q ss_conf             53322334555665---5544565420465---2377511566480016789999972----------1221114-6650
Q 537021.9.peg.4   81 DAASHTSIDDVREI---IDQIYYKPISARF---RVYIMDEVQMLSTAAFNGLLKTLEE----------PPPHVKF-IFAT  143 (369)
Q Consensus        81 ~~~s~~~id~ir~l---~~~~~~~p~~~~~---kv~iid~a~~m~~~a~NaLLK~lEE----------Pp~~~~f-il~t  143 (369)
                      |   -+|...+...   .....+.+----.   .|+++||..+-+...+|+||-.|+|          .+...-| +++|
T Consensus        84 d---~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vt~~~~~~~~~~~~f~viaT  160 (329)
T COG0714          84 D---LLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIAT  160 (329)
T ss_pred             H---HCCHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCEEEECCCCCCCCCCCCEEEEE
T ss_conf             8---2056888766425771898468733451338998703458988999999999726897079665337998789982


Q ss_pred             CCC------CCCCHHHHHHH-HHHHCCCCCCHH
Q ss_conf             675------43303567543-332102454001
Q 537021.9.peg.4  144 TEI------RKIPITVLSRC-QRFDLHRISIGD  169 (369)
Q Consensus       144 ~~~------~~ll~TI~SRc-q~~~f~~l~~~~  169 (369)
                      .||      .-+++...-|| ..+.+..+..++
T Consensus       161 ~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~  193 (329)
T COG0714         161 QNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEE  193 (329)
T ss_pred             CCCCCCCCCCCCCHHHHCCCEEEEECCCCCCHH
T ss_conf             686765788789988881038877648997388


No 120
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936   Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH.    FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=98.80  E-value=1.1e-08  Score=84.31  Aligned_cols=167  Identities=26%  Similarity=0.421  Sum_probs=101.7

Q ss_pred             CCCHHHHHHHHHHHHH-----------CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             9284899999999998-----------28767062010787988889999999996146877788665878999779999
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFK-----------SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAI   69 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~-----------~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i   69 (369)
                      |-|.+.+++.|...|.           -+|+|---|++||||||||.+|++.|    .|.   +-|-..           
T Consensus        61 VAG~dEAKeEl~EiVdFLK~P~kf~~LGaKIPKGVLLvGPPGTGKTLLAKAvA----GEA---~VPFF~-----------  122 (505)
T TIGR01241        61 VAGIDEAKEELVEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVA----GEA---GVPFFS-----------  122 (505)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH----CCC---CCCCEE-----------
T ss_conf             44532333433313422269637987278898714731787842467887520----258---896247-----------


Q ss_pred             HCCCCCCCCCC---CCCCCCCHHHHHHHHHHHHHH-HHCCCCCEEEEECHHHC---------------CCCHHHHHHHHH
Q ss_conf             77987782224---533223345556655544565-42046523775115664---------------800167899999
Q 537021.9.peg.4   70 IRGNHVDVVEL---DAASHTSIDDVREIIDQIYYK-PISARFRVYIMDEVQML---------------STAAFNGLLKTL  130 (369)
Q Consensus        70 ~~~~~~d~~e~---~~~s~~~id~ir~l~~~~~~~-p~~~~~kv~iid~a~~m---------------~~~a~NaLLK~l  130 (369)
                      -+||  ||+|+   =|||     -||+|-+++... |-     ||+|||.|..               .+|+=|-||==|
T Consensus       123 iSGS--dFVEMFVGVGAS-----RVRDLFeqAK~nAPC-----IIFIDEIDAVGr~RGaG~lGGGnDEREQTLNQLLVEM  190 (505)
T TIGR01241       123 ISGS--DFVEMFVGVGAS-----RVRDLFEQAKKNAPC-----IIFIDEIDAVGRQRGAGELGGGNDEREQTLNQLLVEM  190 (505)
T ss_pred             ECCC--CEEECCCCCCCE-----EHHHHHHHHHHHCCC-----EEEEECHHHCCCCCCCCCCCCCCCHHHHHHHHHHEEC
T ss_conf             4076--101112056400-----014457999971897-----0564010000333564366765413554332331331


Q ss_pred             HHCCCCC-CEEEEECCCCCCCHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHH--CCCCCCHH-HHHHHHHCCCC
Q ss_conf             7212211-14665067543303567543332102--45400135678764310--13456256-64456531676
Q 537021.9.peg.4  131 EEPPPHV-KFIFATTEIRKIPITVLSRCQRFDLH--RISIGDLIELFTKILQE--ESIEFDPE-AVAMIARASDG  199 (369)
Q Consensus       131 EEPp~~~-~fil~t~~~~~ll~TI~SRcq~~~f~--~l~~~~i~~~L~~i~~~--E~i~~d~~-~l~~ia~~s~G  199 (369)
                      .=...++ ++|+++||--.+|+.=+=|==+|+ |  .++..++.-+ ++|++-  .+++++++ .|+.||+..-|
T Consensus       191 DGF~~~~gvIv~AATNRPDvLD~ALLRPGRFD-RQv~V~~PD~~GR-~~IL~VH~~~~kLa~~vdL~~~Ar~TPG  263 (505)
T TIGR01241       191 DGFGTNTGVIVIAATNRPDVLDPALLRPGRFD-RQVVVDLPDIKGR-EEILKVHAKNKKLAPDVDLKAVARRTPG  263 (505)
T ss_pred             CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC-CEEECCCCCHHHH-HHHHHHHHCCCCCCCCCCHHHHHHHCCC
T ss_conf             78589885799850488411651006878744-5134588874678-9999998548899702477999701568


No 121
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.76  E-value=1.9e-07  Score=75.08  Aligned_cols=128  Identities=23%  Similarity=0.369  Sum_probs=85.1

Q ss_pred             CCCHHHHHHHHHHHHHCCC--------CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH--
Q ss_conf             9284899999999998287--------670620107879888899999999961468777886658789997799997--
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGR--------IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAII--   70 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~--------~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~--   70 (369)
                      ||||+++++.+.+++...|        ---++||.||.|+|||-+|+.+|+.|.  ..   ....+ +..-..-..++  
T Consensus       460 viGQ~~Ai~~v~~ai~~~raGL~~~~rPigsFlf~GPTGVGKTElak~LA~~L~--~~---lir~D-MSEy~e~hsvsrL  533 (758)
T PRK11034        460 VFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--IE---LLRFD-MSEYMERHTVSRL  533 (758)
T ss_pred             HHCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH--HH---HHCCC-HHHHCCHHHHHHH
T ss_conf             745499999999999998638889999705899978998777999999999986--67---72142-6653120147774


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC-----------CCCCE
Q ss_conf             7987782224533223345556655544565420465237751156648001678999997212-----------21114
Q 537021.9.peg.4   71 RGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP-----------PHVKF  139 (369)
Q Consensus        71 ~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp-----------~~~~f  139 (369)
                      -|.-|-++        |-|+==.|.+.++..|+.    |+++||.|+-.++-+|-||-.|+|--           .||++
T Consensus       534 iGaPPGYV--------Gy~eGG~Lte~Vr~~Pys----VvL~DEIEKAhpdV~nilLQvlD~G~LtD~~Gr~vdF~NtiI  601 (758)
T PRK11034        534 IGAPPGYV--------GFDQGGLLTDAVIKHPHA----VLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVL  601 (758)
T ss_pred             CCCCCCCC--------CCCCCCCCCHHHHHCCCE----EEEEHHHHHHCHHHHHHHHHHCCCCCCCCCCCCEEECEEEEE
T ss_conf             48998666--------767777012878739877----997336756398999988732377830179999884400199


Q ss_pred             EEEECCCC
Q ss_conf             66506754
Q 537021.9.peg.4  140 IFATTEIR  147 (369)
Q Consensus       140 il~t~~~~  147 (369)
                      |+++ |..
T Consensus       602 ImTS-N~G  608 (758)
T PRK11034        602 VMTT-NAG  608 (758)
T ss_pred             EEEC-CCC
T ss_conf             9825-617


No 122
>PRK08727 hypothetical protein; Validated
Probab=98.75  E-value=2.5e-07  Score=74.17  Aligned_cols=194  Identities=14%  Similarity=0.200  Sum_probs=120.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      |+|.+.....++... .+.-++.+.++||.|+|||-++.+.+....-...                         ...++
T Consensus        22 i~~~n~~~a~l~~~~-~~~~~~~lyl~G~~GsGKTHLl~a~~~~~~~~~~-------------------------~~~yl   75 (233)
T PRK08727         22 IAAPDGLLAQLQALA-AGQSSDWLYLSGPAGTGKTHLALSLCAAAEQAGR-------------------------SSAYL   75 (233)
T ss_pred             CCCCHHHHHHHHHHH-CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCC-------------------------CEEEE
T ss_conf             678559999999874-3888898999899999889999999999982799-------------------------72884


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC--CCHHHHHHHHHHHCC-CCCCEEEEECC-CCC---CCHHH
Q ss_conf             533223345556655544565420465237751156648--001678999997212-21114665067-543---30356
Q 537021.9.peg.4   81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS--TAAFNGLLKTLEEPP-PHVKFIFATTE-IRK---IPITV  153 (369)
Q Consensus        81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~--~~a~NaLLK~lEEPp-~~~~fil~t~~-~~~---ll~TI  153 (369)
                      +...  ..+...+.++.+     + ..-++.||++|.+.  .+.+.+|-.+...=. .+..++++++. |..   .+|-+
T Consensus        76 ~l~~--~~~~~~~~l~~l-----e-~~~ll~iDDid~i~g~~~~e~aLFhL~N~~~~~~~~ll~ts~~~P~~l~~~l~DL  147 (233)
T PRK08727         76 PLQA--AAGRLRDALEAL-----E-GRSLVALDGVDSIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDL  147 (233)
T ss_pred             EHHH--HHHHHHHHHHHH-----C-CCCEEEEECCHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCHHHH
T ss_conf             4788--532025677531-----0-3897898550112698279999999999998619838997798956623100219


Q ss_pred             HHHHH---HHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCC---CHHHCCCCHHHHHHC
Q ss_conf             75433---321024540013567876431013456256644565316764200110001110---000001210322000
Q 537021.9.peg.4  154 LSRCQ---RFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAI---ARCNDKIVTSSVRLM  227 (369)
Q Consensus       154 ~SRcq---~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i---~~~~~~i~~e~v~~l  227 (369)
                      +||..   .+.+.++++++....|.+.+...|+.+++++++.+++...=|++...++++++-   .....+||..-+.++
T Consensus       148 ~SRL~~~~~~~l~~~dD~~~~~iL~~~a~~rgl~l~~~V~~Yll~r~~R~~~~l~~~l~~LD~~SL~~kr~iTip~vk~v  227 (233)
T PRK08727        148 RSRLSQCIRIGLPVLDDVARAAVLRDRAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLDRESLAAKRRITVPFLRRV  227 (233)
T ss_pred             HHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf             99996692288578897999999999999869999989999999856889999999999999999980898889999999


Q ss_pred             C
Q ss_conf             1
Q 537021.9.peg.4  228 L  228 (369)
Q Consensus       228 l  228 (369)
                      +
T Consensus       228 L  228 (233)
T PRK08727        228 L  228 (233)
T ss_pred             H
T ss_conf             9


No 123
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.74  E-value=1.9e-07  Score=75.06  Aligned_cols=132  Identities=19%  Similarity=0.307  Sum_probs=86.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCC-------C-EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf             92848999999999982876-------7-062010787988889999999996146877788665878999779999779
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRI-------A-QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRG   72 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~-------~-ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~   72 (369)
                      ||||+++++.+.+++...|.       | -++||.||.|+|||-+|+.+|..|+............-...-.+ ..-.-|
T Consensus       511 ViGQd~AI~~vs~ai~rsraGl~~~~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~~liR~DMSEy~E~hs-vsrLIG  589 (823)
T CHL00095        511 IIGQDEAVVAVSKAIRRARVGLKNPNRPIASFIFCGPTGVGKTELTKALASYFFGSEEAMIRLDMSEYMEKHT-VSKLIG  589 (823)
T ss_pred             HCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCC-HHHHCC
T ss_conf             4076999999999999997089989997468998789988779999999999747820258853510155420-767458


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC-----------CCCCEEE
Q ss_conf             87782224533223345556655544565420465237751156648001678999997212-----------2111466
Q 537021.9.peg.4   73 NHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP-----------PHVKFIF  141 (369)
Q Consensus        73 ~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp-----------~~~~fil  141 (369)
                      .-|-++        |-|+==.|.+.++.+||.    |+++||.|+-.++-+|-||-.|+|--           .||++|+
T Consensus       590 aPPGYV--------Gy~eGG~LTeaVrr~Pys----VvLfDEIEKAHpdV~nilLQvlDdG~LtD~~Gr~vdF~NtIIIm  657 (823)
T CHL00095        590 SPPGYV--------GYNEGGQLTEAVRKKPYT----VVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIM  657 (823)
T ss_pred             CCCCCC--------CCCCCCCHHHHHHCCCCE----EEEECHHHHCCHHHHHHHHHHCCCCCCCCCCCCEEECEEEEEEE
T ss_conf             998766--------778788201988719986----99862131138899998876516884348999988431039997


Q ss_pred             EECC
Q ss_conf             5067
Q 537021.9.peg.4  142 ATTE  145 (369)
Q Consensus       142 ~t~~  145 (369)
                      +++=
T Consensus       658 TSNl  661 (823)
T CHL00095        658 TSNL  661 (823)
T ss_pred             CCCC
T ss_conf             1650


No 124
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.74  E-value=2.7e-07  Score=73.98  Aligned_cols=153  Identities=20%  Similarity=0.287  Sum_probs=89.2

Q ss_pred             CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC--CCCCCCCCCHHHHHHHHH
Q ss_conf             767062010787988889999999996146877788665878999779999779877822--245332233455566555
Q 537021.9.peg.4   19 RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVV--ELDAASHTSIDDVREIID   96 (369)
Q Consensus        19 ~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~--e~~~~s~~~id~ir~l~~   96 (369)
                      +-+...||+||||+|||.+|+++|..++..--...                    .|++.  ++ +   -+-..||++..
T Consensus       274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~--------------------~~~l~sk~v-G---esek~ir~~F~  329 (494)
T COG0464         274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVK--------------------GSELLSKWV-G---ESEKNIRELFE  329 (494)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEC--------------------CHHHHHHHH-H---HHHHHHHHHHH
T ss_conf             88836999889997589999998754498248843--------------------355540776-5---99999999999


Q ss_pred             HHHHHHHCCCCCEEEEECHHHC----C-------CCHHHHHHHHHH--HCCCCCCEEEEECCCCCCCHHHHH--HHH-HH
Q ss_conf             4456542046523775115664----8-------001678999997--212211146650675433035675--433-32
Q 537021.9.peg.4   97 QIYYKPISARFRVYIMDEVQML----S-------TAAFNGLLKTLE--EPPPHVKFIFATTEIRKIPITVLS--RCQ-RF  160 (369)
Q Consensus        97 ~~~~~p~~~~~kv~iid~a~~m----~-------~~a~NaLLK~lE--EPp~~~~fil~t~~~~~ll~TI~S--Rcq-~~  160 (369)
                      .+.    ....-|++|||+|.+    +       ....|-||..+.  |+-.+|+-|-+|+.|+.+-|.++-  |-. ++
T Consensus       330 ~A~----~~~p~iifiDEiDs~~~~r~~~~~~~~~rv~~~ll~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i  405 (494)
T COG0464         330 KAR----KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLI  405 (494)
T ss_pred             HHH----HCCCCEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHCCCCCEEEE
T ss_conf             999----6699889748866674128998763799999999999747544376489964798332687562436630378


Q ss_pred             HCCCCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHCCCC
Q ss_conf             102454001356787643101345-625664456531676
Q 537021.9.peg.4  161 DLHRISIGDLIELFTKILQEESIE-FDPEAVAMIARASDG  199 (369)
Q Consensus       161 ~f~~l~~~~i~~~L~~i~~~E~i~-~d~~~l~~ia~~s~G  199 (369)
                      .|.+++.++-...++..+...+.. .++-.++.+++..+|
T Consensus       406 ~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~  445 (494)
T COG0464         406 YVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEG  445 (494)
T ss_pred             EECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             7179898999999999854156511556419999987527


No 125
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.73  E-value=3.2e-06  Score=66.04  Aligned_cols=179  Identities=18%  Similarity=0.312  Sum_probs=118.0

Q ss_pred             CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC----------CCCC
Q ss_conf             876706201078798888999999999614687778866587899977999977987782224533----------2233
Q 537021.9.peg.4   18 GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA----------SHTS   87 (369)
Q Consensus        18 ~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~----------s~~~   87 (369)
                      |..-..+.++|+.|.|||-+-.+.+..+.-..+..                       .|+.+.+.          .+.+
T Consensus       142 g~~yNPLfIyG~~GlGKTHLl~AIgn~~~~~~p~~-----------------------~v~Y~tae~F~~~~v~al~~~~  198 (447)
T PRK00149        142 GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNA-----------------------KVVYVSSEKFTNDFVKALRNNA  198 (447)
T ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCC-----------------------EEEEEEHHHHHHHHHHHHHCCC
T ss_conf             76778558977998878899999999999858997-----------------------2899549999999999985186


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC--CCHHHHHHHHHHHCC-CCCCEEEEECCC----CCCCHHHHHHHH--
Q ss_conf             45556655544565420465237751156648--001678999997212-211146650675----433035675433--
Q 537021.9.peg.4   88 IDDVREIIDQIYYKPISARFRVYIMDEVQMLS--TAAFNGLLKTLEEPP-PHVKFIFATTEI----RKIPITVLSRCQ--  158 (369)
Q Consensus        88 id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~--~~a~NaLLK~lEEPp-~~~~fil~t~~~----~~ll~TI~SRcq--  158 (369)
                      +++.|+-     |+    ..-|.+|||.+.+.  ...|.-|..++..-- .+-..||++..+    ..+-+-++||..  
T Consensus       199 ~~~Fr~~-----yr----~~DvLliDDiqfl~gk~~tqeeff~~fn~l~~~~kqiv~tsd~~P~~l~~l~~rL~SRf~~G  269 (447)
T PRK00149        199 MEEFKEK-----YR----SVDVLLIDDIQFLAGKEKTQEEFFHTFNALHENNKQIVITSDRPPKELEGLEDRLRSRFEWG  269 (447)
T ss_pred             HHHHHHH-----HH----CCCEEEECHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHCC
T ss_conf             9999999-----97----28854321488860557799999999999998499689957889676565117788676376


Q ss_pred             -HHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHH---HCCCCHHHHHHCC
Q ss_conf             -321024540013567876431013456256644565316764200110001110000---0012103220001
Q 537021.9.peg.4  159 -RFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARC---NDKIVTSSVRLML  228 (369)
Q Consensus       159 -~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~---~~~i~~e~v~~ll  228 (369)
                       .+.+.+++.+.-...|++-++.+++.++++++.+||..-.||+|.-...+-++.+++   +..++.+.+..++
T Consensus       270 l~~~i~~Pd~e~r~~Il~~k~~~~~~~l~~~v~~~iA~~~~~nvR~LeGal~~l~a~~~~~~~~i~~~~~~~~l  343 (447)
T PRK00149        270 LTVDIEPPDLETRVAILQKKAEEEGINLPNEVLEFIAKRIRSNIRELEGALNRLVAYASLTGRPITLELAKEAL  343 (447)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             26510599999999999999997289999899999997126889999999999999999868999999999999


No 126
>pfam01637 Arch_ATPase Archaeal ATPase. This family contain a conserved P-loop motif that is involved in binding ATP. This family is almost exclusively found in archaebacteria and particularly in Methanococcus jannaschii that encodes sixteen members of this family.
Probab=98.72  E-value=4.3e-07  Score=72.48  Aligned_cols=195  Identities=15%  Similarity=0.082  Sum_probs=116.1

Q ss_pred             CCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCC--------
Q ss_conf             284899999999998287670620107879888899999999961468777886658789997799997798--------
Q 537021.9.peg.4    2 IGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGN--------   73 (369)
Q Consensus         2 iGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~--------   73 (369)
                      +|-+.-.+.|.+.+.++.- +..+++||+|+|||++++.+++.+.........  .+ |.....-..+....        
T Consensus         2 ~~Re~EL~~L~~~~~~~~~-~~ivi~G~RR~GKTsLi~~~~~~~~~~~~~~i~--~~-~~~~~~~~~~~~~~~~~~l~~~   77 (223)
T pfam01637         2 FDREKELKELEEWAERGTY-PIIVVYGPRRCGKTALLREFLEELRELGYRVIY--YD-PLRREFEEKLDRFEEAKRLAEA   77 (223)
T ss_pred             CCHHHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE--EE-CHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8979999999999966997-189998688787999999999863346852899--95-1444379999988888999999


Q ss_pred             CCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC-CC----HHHHHHHHHHHCC--CCCCEEEEEC
Q ss_conf             778222453--3223345556655544565420465237751156648-00----1678999997212--2111466506
Q 537021.9.peg.4   74 HVDVVELDA--ASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS-TA----AFNGLLKTLEEPP--PHVKFIFATT  144 (369)
Q Consensus        74 ~~d~~e~~~--~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~-~~----a~NaLLK~lEEPp--~~~~fil~t~  144 (369)
                      ..+......  ........+.++.+.+.   ..++.-|++|||+..+. ..    --+.|.++++..+  .++.+|+|.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~---~~~~~~iiviDEfq~l~~~~~~~~~~~~l~~~~d~~~~~~~~~~I~~GS  154 (223)
T pfam01637        78 LGDALPKIGIAKSKLAFLSLTLLFELLK---RKGKKIAIIIDEVQYAIGLNGAESYVKLLLNLIDYPPKEYHLIVVLCGS  154 (223)
T ss_pred             HHHHCCCCCCCCCCCHHHHHHHHHHHHH---HCCCCEEEEEECHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             8765123322211207889999999998---5599659997016776402443059999999999752457758999727


Q ss_pred             CCCCCCHHHH------HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCH
Q ss_conf             7543303567------5433321024540013567876431013456256644565316764200
Q 537021.9.peg.4  145 EIRKIPITVL------SRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARD  203 (369)
Q Consensus       145 ~~~~ll~TI~------SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~  203 (369)
                      +.+-+..-+.      -|-..+.++|++..+..+++.+-.++.++.++++.+..+....+|.++.
T Consensus       155 ~~~~m~~~~~~~~plygR~~~i~l~p~~~~~~~efl~~~f~e~~~~~~~~~~~~iy~~~gG~P~y  219 (223)
T pfam01637       155 SEGLTIELLDYKSPLYGRHRWALLKPFDFETAWNFLREGFEELYEPGPKEEFEEVWRLLGGNPGY  219 (223)
T ss_pred             HHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHH
T ss_conf             19999998620565357502277268998999999999999847899989999999996983899


No 127
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.71  E-value=4.1e-07  Score=72.62  Aligned_cols=194  Identities=15%  Similarity=0.216  Sum_probs=125.3

Q ss_pred             HHHHHHCC--CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC--CC
Q ss_conf             99999828--767062010787988889999999996146877788665878999779999779877822245332--23
Q 537021.9.peg.4   11 LTNAFKSG--RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAAS--HT   86 (369)
Q Consensus        11 l~~~~~~~--~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s--~~   86 (369)
                      +...+..+  +.-.-++++||.|.|||-+..+.....+-..+                       .+-++.+.+..  +.
T Consensus       101 a~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~-----------------------~a~v~y~~se~f~~~  157 (408)
T COG0593         101 AAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGP-----------------------NARVVYLTSEDFTND  157 (408)
T ss_pred             HHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC-----------------------CCEEEECCHHHHHHH
T ss_conf             999987566886895799879999789999999999986299-----------------------864885048998999


Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCC--HHHHHHHHHHHCCCCC-CEEEEECC-CCC---CCHHHHHHH--
Q ss_conf             34555665554456542046523775115664800--1678999997212211-14665067-543---303567543--
Q 537021.9.peg.4   87 SIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTA--AFNGLLKTLEEPPPHV-KFIFATTE-IRK---IPITVLSRC--  157 (369)
Q Consensus        87 ~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~--a~NaLLK~lEEPp~~~-~fil~t~~-~~~---ll~TI~SRc--  157 (369)
                      =|..+|+ .+--.++-.- ..-+.+||+++.+...  .+.+|--++.+-..+- ..++++.. |..   +.|-++||.  
T Consensus       158 ~v~a~~~-~~~~~Fk~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~  235 (408)
T COG0593         158 FVKALRD-NEMEKFKEKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEW  235 (408)
T ss_pred             HHHHHHH-HHHHHHHHHH-CCCEEEECHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCHHHHHHHHC
T ss_conf             9999885-0488888764-2673555138675677157999999999888508879997078832211035889989863


Q ss_pred             -HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHH---CCCCHHHHHHCCC
Q ss_conf             -33210245400135678764310134562566445653167642001100011100000---0121032200013
Q 537021.9.peg.4  158 -QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCN---DKIVTSSVRLMLA  229 (369)
Q Consensus       158 -q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~---~~i~~e~v~~llg  229 (369)
                       ..+.+.+++.+.....|.+-++..++.++++++..+|..-..|+|+....|+++.+++.   ..+|.+.+.+++.
T Consensus       236 Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~  311 (408)
T COG0593         236 GLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILK  311 (408)
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             0577527988899999999999865888887999999997003099999999999999985387576999999999


No 128
>KOG2680 consensus
Probab=98.71  E-value=2.4e-07  Score=74.36  Aligned_cols=101  Identities=28%  Similarity=0.421  Sum_probs=85.4

Q ss_pred             CCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEEC------------CCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             52377511566480016789999972122111466506------------754330356754333210245400135678
Q 537021.9.peg.4  107 FRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATT------------EIRKIPITVLSRCQRFDLHRISIGDLIELF  174 (369)
Q Consensus       107 ~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~------------~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L  174 (369)
                      .-|.+|||+||+-.+++.-|=+-||+--..+ .+++|+            +|+-+|--..-|..++.-.|.+.+++.+.|
T Consensus       289 pGVLFIDEvHMLDIEcFsFlNrAlE~d~~Pi-iimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~IL  367 (454)
T KOG2680         289 PGVLFIDEVHMLDIECFSFLNRALENDMAPI-IIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKIL  367 (454)
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHHHHHCCCCE-EEEECCCCEEEEECCCCCCCCCCCHHHHHHHHEEECCCCCHHHHHHHH
T ss_conf             5517874002111579998888765046857-999727755776057778988886777644125525657688999998


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHCC-CCCCCHHHHCC
Q ss_conf             76431013456256644565316-76420011000
Q 537021.9.peg.4  175 TKILQEESIEFDPEAVAMIARAS-DGSARDGLSLL  208 (369)
Q Consensus       175 ~~i~~~E~i~~d~~~l~~ia~~s-~GslR~Al~lL  208 (369)
                      +--|..|.+.++++|++++.+.+ +-|+|-|++++
T Consensus       368 ~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Li  402 (454)
T KOG2680         368 RIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLI  402 (454)
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             75500521335878999999861312378999998


No 129
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.71  E-value=3e-07  Score=73.56  Aligned_cols=131  Identities=18%  Similarity=0.312  Sum_probs=88.6

Q ss_pred             CCCHHHHHHHHHHHHHCCCC-------C-EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH--
Q ss_conf             92848999999999982876-------7-0620107879888899999999961468777886658789997799997--
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRI-------A-QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAII--   70 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~-------~-ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~--   70 (369)
                      ||||+.++..+.++|...|.       | -++||.||.|+|||-+|+.+|..|+-......-  .+ +..-..-..++  
T Consensus       568 ViGQ~~Av~~v~~ai~~sraGl~d~~rPigsFLFlGPTGVGKTElAK~LA~~LFg~e~~liR--~D-MSEy~E~hsvsrL  644 (852)
T TIGR03345       568 VIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLIT--IN-MSEFQEAHTVSRL  644 (852)
T ss_pred             HCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEE--EC-CHHHCCHHHHHHH
T ss_conf             72849999999999999871799999985689987899877899999999997198611478--42-2432104368786


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC-----------CCCCE
Q ss_conf             7987782224533223345556655544565420465237751156648001678999997212-----------21114
Q 537021.9.peg.4   71 RGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP-----------PHVKF  139 (369)
Q Consensus        71 ~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp-----------~~~~f  139 (369)
                      -|.-|-++        |-|+==.|.+.++.+||.    |+++||.|+-.++-+|-||-.|+|--           .||++
T Consensus       645 iGaPPGYV--------Gy~eGG~LTe~Vrr~Pys----VvLfDEIEKAHpdV~nilLQvlD~G~LtD~~Gr~vdF~NtII  712 (852)
T TIGR03345       645 KGSPPGYV--------GYGEGGVLTEAVRRKPYS----VVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVI  712 (852)
T ss_pred             CCCCCCCC--------CCCCCCHHHHHHHHCCCE----EEEECHHHHCCHHHHHHHHHHHCCCEEECCCCCEEECEEEEE
T ss_conf             38999766--------748777210988809986----888611300288999999987246777579999884521299


Q ss_pred             EEEECCCC
Q ss_conf             66506754
Q 537021.9.peg.4  140 IFATTEIR  147 (369)
Q Consensus       140 il~t~~~~  147 (369)
                      |+++ |..
T Consensus       713 ImTS-N~G  719 (852)
T TIGR03345       713 LLTS-NAG  719 (852)
T ss_pred             EECC-CHH
T ss_conf             9757-244


No 130
>pfam06144 DNA_pol3_delta DNA polymerase III, delta subunit. DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction. The delta subunit is also known as HolA.
Probab=98.69  E-value=4.6e-08  Score=79.60  Aligned_cols=161  Identities=14%  Similarity=0.233  Sum_probs=119.3

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             20107879888899999999961468777886658789997799997798778222453322334555665554456542
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPI  103 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~  103 (369)
                      |+|+|+.-.-.......+.+.+.-... .                     -.++..+|+.. .   .+-++.+.+.-.|.
T Consensus         1 Yll~G~e~~l~~~~~~~i~~~~~~~~~-~---------------------~~n~~~~d~~~-~---~~~~i~~~~~t~sl   54 (172)
T pfam06144         1 YLLYGEDPFLLEETKDQILKAALDQGF-E---------------------DFNYIYFDLEE-D---WADDVLEECETLPF   54 (172)
T ss_pred             CEEECCCHHHHHHHHHHHHHHHHCCCC-C---------------------EEEEEEECCCC-C---CHHHHHHHHCCCCC
T ss_conf             979728599999999999999737997-3---------------------03689862776-6---69999999728998


Q ss_pred             CCCCCEEEEECHHH----CCCCHHHHHHHHHHHCCCCCCEEEEECC-C---CCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             04652377511566----4800167899999721221114665067-5---43303567543332102454001356787
Q 537021.9.peg.4  104 SARFRVYIMDEVQM----LSTAAFNGLLKTLEEPPPHVKFIFATTE-I---RKIPITVLSRCQRFDLHRISIGDLIELFT  175 (369)
Q Consensus       104 ~~~~kv~iid~a~~----m~~~a~NaLLK~lEEPp~~~~fil~t~~-~---~~ll~TI~SRcq~~~f~~l~~~~i~~~L~  175 (369)
                      -|++|+++|..+..    .+......|.+.++.||+++++|+.++. +   .++...+.+-+..+.|.+++..++..|+.
T Consensus        55 F~~~rlvii~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lv~~~~~~~~~~~k~~k~l~k~~~~i~~~~~~~~~l~~wi~  134 (172)
T pfam06144        55 FSDKRIVILNNPNLKESKLNEKLLKRLEEYLSNPPEDTLLIIEAPGKLDERKKLTKLLKKKATVVECFTLKEEELIQWIQ  134 (172)
T ss_pred             CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHH
T ss_conf             88976999977642445553999999999983699872899983674136788899998376699934898789999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCC
Q ss_conf             64310134562566445653167642001100011
Q 537021.9.peg.4  176 KILQEESIEFDPEAVAMIARASDGSARDGLSLLDQ  210 (369)
Q Consensus       176 ~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq  210 (369)
                      +.+...|+++++++++.++...+||++.+-+-+|+
T Consensus       135 ~~~~~~g~~i~~~a~~~L~~~~g~nl~~l~~EieK  169 (172)
T pfam06144       135 KRAKELGLKIEKDALQLLAEKVENNLLAIAQELEK  169 (172)
T ss_pred             HHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHH
T ss_conf             99998499989999999999978489999999997


No 131
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461    Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=98.66  E-value=1.4e-07  Score=76.15  Aligned_cols=127  Identities=23%  Similarity=0.377  Sum_probs=86.7

Q ss_pred             CCCHHHHHHHHHHHHHCCC--------CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHC-
Q ss_conf             9284899999999998287--------6706201078798888999999999614687778866587899977999977-
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGR--------IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIR-   71 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~--------~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~-   71 (369)
                      |=||+.+++.|..+|+.-|        ---+|||+||.|||||-+||.||+.|.-+=-.+|.      ..=..=+.|+. 
T Consensus       499 IfGQD~AI~~lv~aiK~SrAGl~~~nkP~GSFLF~GPTGVGKTElak~LA~~LGv~l~RFDM------SEYmEKHTVsRL  572 (774)
T TIGR02639       499 IFGQDEAIEQLVSAIKRSRAGLGEPNKPVGSFLFVGPTGVGKTELAKQLAEELGVHLLRFDM------SEYMEKHTVSRL  572 (774)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCHHCCCCC------HHHHHHHHHHHH
T ss_conf             15158999999999999874247788816888864798962578899999970820010465------044689999874


Q ss_pred             -CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC-----------CCCCE
Q ss_conf             -987782224533223345556655544565420465237751156648001678999997212-----------21114
Q 537021.9.peg.4   72 -GNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP-----------PHVKF  139 (369)
Q Consensus        72 -~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp-----------~~~~f  139 (369)
                       |+-|-+        .|.||==-|.+-++..|+.    |.++||.|+=.++=.|-||=+|.--.           .||+.
T Consensus       573 IGsPPGY--------VGfEqGGLLT~AvrK~P~c----VLLLDEIEKAHpDI~NILLQVMD~AtLTDN~GrKaDFRNVIL  640 (774)
T TIGR02639       573 IGSPPGY--------VGFEQGGLLTDAVRKHPHC----VLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVIL  640 (774)
T ss_pred             HCCCCCC--------CCCCCCCCCHHHHCCCCCE----EEHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEECCEEE
T ss_conf             1688885--------1316777212233128853----542346666313366678766335434058885763113688


Q ss_pred             EEEECC
Q ss_conf             665067
Q 537021.9.peg.4  140 IFATTE  145 (369)
Q Consensus       140 il~t~~  145 (369)
                      |+|+|-
T Consensus       641 IMTSNa  646 (774)
T TIGR02639       641 IMTSNA  646 (774)
T ss_pred             EECCCC
T ss_conf             840370


No 132
>TIGR00602 rad24 checkpoint protein rad24; InterPro: IPR004582    To be effective as a mechanism that preserves genomic integrity, the DNA damage checkpoint must be extremely sensitive in its ability to detect DNA damage. In Saccharomyces cerevisiae the Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components which may promote checkpoint activation by "sensing" DNA damage directly . Rad24 shares sequence homology with RF-c, a protein that recognises DNA template/RNA primer hybrids during DNA replication. The Ddc1 complex has structural homology to proliferating-cell nuclear antigen (PCNA), which clamps onto DNA and confers processivity to DNA polymerases delta and epsilon. Rad24 is postulated to recognise DNA lesions and then recruit the Ddc1 complex to generate checkpoint signals. ; GO: 0006281 DNA repair, 0007049 cell cycle, 0005634 nucleus.
Probab=98.66  E-value=6.2e-07  Score=71.30  Aligned_cols=189  Identities=17%  Similarity=0.246  Sum_probs=108.1

Q ss_pred             EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCC-CCCCCCCCCCCCCCCHHHHHHHHH----
Q ss_conf             062010787988889999999996146877788665878999779999779-877822245332233455566555----
Q 537021.9.peg.4   22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRG-NHVDVVELDAASHTSIDDVREIID----   96 (369)
Q Consensus        22 ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~-~~~d~~e~~~~s~~~id~ir~l~~----   96 (369)
                      --+|++||+||||+|+.++|||.|-..-.++.-|+.--...-+.-.....+ .+..+-++   |  -++.-.++..    
T Consensus       119 s~LLi~GPsGCgKsT~~k~LsKelg~~~~ew~Np~~~~~~~n~~k~~~~~~~~f~~~PY~---s--q~e~f~efll~a~k  193 (670)
T TIGR00602       119 SILLITGPSGCGKSTTIKILSKELGIKVQEWLNPVLLKEQKNDEKDTLSLESKFSRFPYL---S--QIEVFSEFLLRATK  193 (670)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEECCCC---C--HHHHHHHHHHHHHH
T ss_conf             378841755884478999998886445655407878888851244442125402216763---1--45546787642123


Q ss_pred             --HHHHH--HHCCCCCEEEEECHHHCC-----C--CHHHHHHH--HHHHCCCC-CCEEEEECC---------C-----CC
Q ss_conf             --44565--420465237751156648-----0--01678999--99721221-114665067---------5-----43
Q 537021.9.peg.4   97 --QIYYK--PISARFRVYIMDEVQMLS-----T--AAFNGLLK--TLEEPPPH-VKFIFATTE---------I-----RK  148 (369)
Q Consensus        97 --~~~~~--p~~~~~kv~iid~a~~m~-----~--~a~NaLLK--~lEEPp~~-~~fil~t~~---------~-----~~  148 (369)
                        ++++.  -..++.|+|+|||.=.+|     .  .++.-.|+  ...+|--. .+||++-.+         .     ..
T Consensus       194 Y~~lQ~lG~~~~~~kk~Il~e~lPhln~F~~d~~rr~~~~vlr~~~~~~g~~pPlv~~~te~~~~nlegdNnq~kfGir~  273 (670)
T TIGR00602       194 YNKLQKLGDDLQTDKKLILVEDLPHLNKFYRDLDRRALREVLRTKYVSEGRLPPLVIIITESELNNLEGDNNQDKFGIRL  273 (670)
T ss_pred             HHHHHHCCCCCCCCCCEEEECCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCHHCCCCC
T ss_conf             46664214110247545772137640221366126899999999862378988358997124344457755510104101


Q ss_pred             CCH--H-----HHHHH--HHHHCCCCCCHHHHHHHHHHHHHCCCCC-------CHHHHHHHHHCCCCCCCHHHHCCCCCC
Q ss_conf             303--5-----67543--3321024540013567876431013456-------256644565316764200110001110
Q 537021.9.peg.4  149 IPI--T-----VLSRC--QRFDLHRISIGDLIELFTKILQEESIEF-------DPEAVAMIARASDGSARDGLSLLDQAI  212 (369)
Q Consensus       149 ll~--T-----I~SRc--q~~~f~~l~~~~i~~~L~~i~~~E~i~~-------d~~~l~~ia~~s~GslR~Al~lLeq~i  212 (369)
                      .=+  |     |+--|  ..+.|.|+.+.-|..+|..|+.+|+..-       +...+..+...+.|++|-|++-| |..
T Consensus       274 ~F~~~~IM~~~il~~pr~~~i~FNPiapT~mkK~L~~I~~~e~~~~~~K~~~~~~~~ve~~c~~~~GDiRSAInsL-Qfs  352 (670)
T TIGR00602       274 LFPAVTIMNKEILEEPRVSNIKFNPIAPTLMKKFLNRIVTKEAKKKGEKILVPKKTSVEDLCQGESGDIRSAINSL-QFS  352 (670)
T ss_pred             CCCHHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHH-HHH
T ss_conf             3525777526654077613100178717899998555621314346785446634689999710688478888888-864


Q ss_pred             CHHH
Q ss_conf             0000
Q 537021.9.peg.4  213 ARCN  216 (369)
Q Consensus       213 ~~~~  216 (369)
                      +..+
T Consensus       353 ~s~s  356 (670)
T TIGR00602       353 SSKS  356 (670)
T ss_pred             HHHC
T ss_conf             3202


No 133
>PRK06620 hypothetical protein; Validated
Probab=98.62  E-value=5.1e-07  Score=71.89  Aligned_cols=178  Identities=13%  Similarity=0.149  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHC---CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             48999999999982---876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    4 QKPMIKTLTNAFKS---GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         4 q~~~~~~l~~~~~~---~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      ++.+++.+.+.-..   +-....++++||+|+|||-++.++++.-++.-                              +
T Consensus        24 N~~A~~~i~~wp~~~~~~~~~~~l~I~Gp~gSGKTHL~~i~~~~~~a~~------------------------------~   73 (214)
T PRK06620         24 NDQAYNIIKNWQCMFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYI------------------------------I   73 (214)
T ss_pred             HHHHHHHHHHCHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEE------------------------------E
T ss_conf             9999999983630256686555599987999988999999999828588------------------------------1


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECC-CCC-CCHHHHHHH-
Q ss_conf             53322334555665554456542046523775115664800167899999721221114665067-543-303567543-
Q 537021.9.peg.4   81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTE-IRK-IPITVLSRC-  157 (369)
Q Consensus        81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~-~~~-ll~TI~SRc-  157 (369)
                      +...  -.++            ....+.++|||++|..+..+.=.|...+-|  .+..++++++. |.. .+|=.+||- 
T Consensus        74 ~~~~--~~~~------------~~~~~~~~iiddid~~~e~~lfhlfN~~~~--~~~~llits~~~p~~~~L~DL~SRl~  137 (214)
T PRK06620         74 KDIF--FNEE------------ILEKYNAFIIEDIENWQEPALLHIFNIINE--KQKYLLLTSSDKSRNFTLPDLSSRIK  137 (214)
T ss_pred             CHHH--CCHH------------HHHHCCCEEEECCCCCCHHHHHHHHHHHHH--CCCEEEEEECCCCCCCCCCCHHHHHH
T ss_conf             5121--4587------------884379379846775746799999999971--59879998279852245357899985


Q ss_pred             --HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCC---CCCHHHCCCCHHHHHHC
Q ss_conf             --33210245400135678764310134562566445653167642001100011---10000001210322000
Q 537021.9.peg.4  158 --QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQ---AIARCNDKIVTSSVRLM  227 (369)
Q Consensus       158 --q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq---~i~~~~~~i~~e~v~~l  227 (369)
                        ..+.+.+++++.+...|.+.+...++.++++.++.|+..-+-|++.+..++++   .......+||..-+.++
T Consensus       138 ~~~~~~i~~PdD~l~~~ll~k~~~~r~i~i~~~vi~yl~~ri~Rs~~~l~~~v~~ld~~sl~~kr~Iti~likev  212 (214)
T PRK06620        138 SVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLVKEV  212 (214)
T ss_pred             CCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf             464433269898999999999999869988755999999985178999999999999999983999889999998


No 134
>KOG0742 consensus
Probab=98.58  E-value=6.3e-07  Score=71.22  Aligned_cols=142  Identities=23%  Similarity=0.283  Sum_probs=92.8

Q ss_pred             HHHHHHCCCCCE----EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             999998287670----6201078798888999999999614687778866587899977999977987782224533223
Q 537021.9.peg.4   11 LTNAFKSGRIAQ----SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHT   86 (369)
Q Consensus        11 l~~~~~~~~~~h----a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~   86 (369)
                      |..+-.+-+.++    ..||+||||+|||.+||.+|+.-    +-.+              .+..|.  ||--+   +.-
T Consensus       370 lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S----GlDY--------------A~mTGG--DVAPl---G~q  426 (630)
T KOG0742         370 LAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS----GLDY--------------AIMTGG--DVAPL---GAQ  426 (630)
T ss_pred             HHHHHCCCCCCCCHHHHEEEECCCCCCHHHHHHHHHHHC----CCCE--------------EHHCCC--CCCCC---HHH
T ss_conf             988740430024304400324799986049999998852----8741--------------001378--75552---178


Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCEEEEECHHHC---------C---CCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH
Q ss_conf             34555665554456542046523775115664---------8---00167899999721221114665067543303567
Q 537021.9.peg.4   87 SIDDVREIIDQIYYKPISARFRVYIMDEVQML---------S---TAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVL  154 (369)
Q Consensus        87 ~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m---------~---~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~  154 (369)
                      +|-.|.++.++.+.+ -  +--+.+|||||.+         +   +.|-||||=---+-....+.+|+|+.|+.+=..+-
T Consensus       427 aVTkiH~lFDWakkS-~--rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~  503 (630)
T KOG0742         427 AVTKIHKLFDWAKKS-R--RGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVN  503 (630)
T ss_pred             HHHHHHHHHHHHHHC-C--CCEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHH
T ss_conf             899999987887515-6--6449986116789987520102588999998898762565542689960588321016787


Q ss_pred             HHH-HHHHCCCCCCHHHHHHHHHHH
Q ss_conf             543-332102454001356787643
Q 537021.9.peg.4  155 SRC-QRFDLHRISIGDLIELFTKIL  178 (369)
Q Consensus       155 SRc-q~~~f~~l~~~~i~~~L~~i~  178 (369)
                      -|. +.+.|+-+-.++=...|...+
T Consensus       504 DRide~veFpLPGeEERfkll~lYl  528 (630)
T KOG0742         504 DRIDEVVEFPLPGEEERFKLLNLYL  528 (630)
T ss_pred             HHHHHHEECCCCCHHHHHHHHHHHH
T ss_conf             6555413068997789999999999


No 135
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.56  E-value=5.4e-07  Score=71.70  Aligned_cols=140  Identities=19%  Similarity=0.269  Sum_probs=84.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHH-------CCCCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf             928489999999999828767062010787988889999999996-------1468777886658789997799997798
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSL-------NYKTAHIDVPTVEFEGFGEHCQAIIRGN   73 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l-------~c~~~~~~~~~~~~c~~c~~c~~i~~~~   73 (369)
                      ||||+.++..|.=+..+..++| .|+.||+|+|||++||.|+.-|       .|.-..      ..+..|+.|.......
T Consensus        10 IvGQe~~K~AL~laav~p~~gg-vLi~G~~GtgKStlaR~l~~iLP~~~~~e~~~~~~------~~~~~~~~~~~~~~~~   82 (334)
T PRK13407         10 IVGQEEMKQAMVLTAIDPGIGG-VLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNS------ARPEDCPEWAEVSSTT   82 (334)
T ss_pred             HCCCHHHHHHHHHHHCCCCCCE-EEEECCCCCCHHHHHHHHHHHCCCCCHHCCCCCCC------CCCCCCHHHHHCCCCC
T ss_conf             6493999999999772789860-89978998659999999997289951103675566------7742113343114555


Q ss_pred             ----CCCCCCC-CCCCC----CCHHHHHHHHH-HHHHHH---HCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCC-----
Q ss_conf             ----7782224-53322----33455566555-445654---204652377511566480016789999972122-----
Q 537021.9.peg.4   74 ----HVDVVEL-DAASH----TSIDDVREIID-QIYYKP---ISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPP-----  135 (369)
Q Consensus        74 ----~~d~~e~-~~~s~----~~id~ir~l~~-~~~~~p---~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~-----  135 (369)
                          ..-++++ -+++.    .++|--+.+.. ...+.|   ..+.+-|..+||...+...-.|+||-.+|+---     
T Consensus        83 ~~~~~~p~v~lPl~atedr~~G~ldie~al~~G~~~~~PGlLa~Ah~GVLylDEinll~~~vld~Ll~~~e~G~~~IeRe  162 (334)
T PRK13407         83 MVERPTPVIDLPLGATEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVERE  162 (334)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEEEC
T ss_conf             34489987678999998664474218888626987788605434028867872053333889999998871695799977


Q ss_pred             ------CCCEEEE-ECCCC
Q ss_conf             ------1114665-06754
Q 537021.9.peg.4  136 ------HVKFIFA-TTEIR  147 (369)
Q Consensus       136 ------~~~fil~-t~~~~  147 (369)
                            .+.|+|+ |-||+
T Consensus       163 g~s~~~ParF~LVatmNPe  181 (334)
T PRK13407        163 GLSIRHPARFVLVGSGNPE  181 (334)
T ss_pred             CEEEECCCCCEEEEEECCC
T ss_conf             6346036626589820888


No 136
>KOG0733 consensus
Probab=98.55  E-value=4.6e-07  Score=72.26  Aligned_cols=159  Identities=25%  Similarity=0.295  Sum_probs=96.2

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-
Q ss_conf             7062010787988889999999996146877788665878999779999779877822245332233455566555445-
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIY-   99 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~-   99 (369)
                      |...||+||||||||.+|+++|..|--.--....            -.|..|       +.|.   +=+.||++-+.+. 
T Consensus       223 prGvLlHGPPGCGKT~lA~AiAgel~vPf~~isA------------peivSG-------vSGE---SEkkiRelF~~A~~  280 (802)
T KOG0733         223 PRGVLLHGPPGCGKTSLANAIAGELGVPFLSISA------------PEIVSG-------VSGE---SEKKIRELFDQAKS  280 (802)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHCCCCEEEECC------------HHHHCC-------CCCC---CHHHHHHHHHHHHC
T ss_conf             9751644899864789999975212885485141------------465315-------5752---28999999998736


Q ss_pred             HHHHCCCCCEEEEECHHHCCCCHHH-----------HHHHHHHHCC------CCCCEEEEECCCCCCCHHHHHHHHHH--
Q ss_conf             6542046523775115664800167-----------8999997212------21114665067543303567543332--
Q 537021.9.peg.4  100 YKPISARFRVYIMDEVQMLSTAAFN-----------GLLKTLEEPP------PHVKFIFATTEIRKIPITVLSRCQRF--  160 (369)
Q Consensus       100 ~~p~~~~~kv~iid~a~~m~~~a~N-----------aLLK~lEEPp------~~~~fil~t~~~~~ll~TI~SRcq~~--  160 (369)
                      ++|     =|++|||.|..+..-.+           -||-.|.|+.      ..|+.|-+|+.|+.|=|.+| |-=+|  
T Consensus       281 ~aP-----civFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLR-RaGRFdr  354 (802)
T KOG0733         281 NAP-----CIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALR-RAGRFDR  354 (802)
T ss_pred             CCC-----EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCHHHH-CCCCCCC
T ss_conf             697-----5998511001364404578899999999999851002566668997699824789765587773-2565532


Q ss_pred             --HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCC
Q ss_conf             --102454001356787643101345625664456531676420011000
Q 537021.9.peg.4  161 --DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLL  208 (369)
Q Consensus       161 --~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lL  208 (369)
                        -+.-++...=...|+.+|..-.+..+ =....||++.-|=++.-|..|
T Consensus       355 EI~l~vP~e~aR~~IL~~~~~~lrl~g~-~d~~qlA~lTPGfVGADL~AL  403 (802)
T KOG0733         355 EICLGVPSETAREEILRIICRGLRLSGD-FDFKQLAKLTPGFVGADLMAL  403 (802)
T ss_pred             EEEECCCCHHHHHHHHHHHHHHCCCCCC-CCHHHHHHCCCCCCCHHHHHH
T ss_conf             3530689668899999999862777877-689999751887521419999


No 137
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.54  E-value=2.9e-07  Score=73.67  Aligned_cols=206  Identities=19%  Similarity=0.251  Sum_probs=112.1

Q ss_pred             CCCHHHHHHHHHHHHHCC-CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHHC--CCCCC
Q ss_conf             928489999999999828-767062010787988889999999996146877788665-87899977999977--98778
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSG-RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV-EFEGFGEHCQAIIR--GNHVD   76 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~-~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~-~~c~~c~~c~~i~~--~~~~d   76 (369)
                      +||+....+.+.+.+..= .-....|++|+.|+||..+||++-..    +...+.|-+ --|+.-+. ..+.+  ..|  
T Consensus       145 lig~S~~m~~v~~~i~~~A~s~~~VLI~GEsGTGKe~~Ar~IH~~----S~r~~~pFv~vnc~ai~~-~l~eseLFG~--  217 (457)
T PRK11361        145 ILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYN----SRRAKGPFIKVNCAALPE-SLLESELFGH--  217 (457)
T ss_pred             CEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH----CCCCCCCEEEEECCCCCH-HHHHHHHHCC--
T ss_conf             454699999999999998488995899889985789999999983----798899838764787985-7789997187--


Q ss_pred             CCCCCCCCCCCHHHHH-HHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC-----------CCCCCEEEEEC
Q ss_conf             2224533223345556-65554456542046523775115664800167899999721-----------22111466506
Q 537021.9.peg.4   77 VVELDAASHTSIDDVR-EIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP-----------PPHVKFIFATT  144 (369)
Q Consensus        77 ~~e~~~~s~~~id~ir-~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP-----------p~~~~fil~t~  144 (369)
                        | .++ -+|.+.-| -+.+       .++.=.+++||.+.|+...|..||+.||+-           +.++.+|.+|+
T Consensus       218 --~-kga-ftga~~~~~G~~e-------~A~gGTLfLdeI~~l~~~~Q~kLLr~L~~~~~~~~g~~~~~~~dvRiIaaT~  286 (457)
T PRK11361        218 --E-KGA-FTGAQTLRQGLFE-------RANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATN  286 (457)
T ss_pred             --C-CCC-CCCCCCCCCCCHH-------HCCCCCEECCCHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEECCEEEECCC
T ss_conf             --6-678-7885314698613-------3599826314664523999999999986492785699713665348996578


Q ss_pred             CC-CC------CCHHHHHHHHH--HHCCCCCC--HHHHH----HHHHHHHHCCC---CCCHHHHHHH-HHCCCCCCCHHH
Q ss_conf             75-43------30356754333--21024540--01356----78764310134---5625664456-531676420011
Q 537021.9.peg.4  145 EI-RK------IPITVLSRCQR--FDLHRISI--GDLIE----LFTKILQEESI---EFDPEAVAMI-ARASDGSARDGL  205 (369)
Q Consensus       145 ~~-~~------ll~TI~SRcq~--~~f~~l~~--~~i~~----~L~~i~~~E~i---~~d~~~l~~i-a~~s~GslR~Al  205 (369)
                      .. ..      +-+-.-.|-..  +.++|+..  ++|..    +|.+.+.+.+.   .+++++++.+ .+-.-||+|.--
T Consensus       287 ~~L~~~v~~g~Fr~DLyyrL~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvREL~  366 (457)
T PRK11361        287 RDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELS  366 (457)
T ss_pred             CCHHHHHHCCCCHHHHHHHHCEEEEECCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHH
T ss_conf             78599987583238899530221251738545875499999999999999749998988999999995699997999999


Q ss_pred             HCCCCCCCHHHCC-CCHHHH
Q ss_conf             0001110000001-210322
Q 537021.9.peg.4  206 SLLDQAIARCNDK-IVTSSV  224 (369)
Q Consensus       206 ~lLeq~i~~~~~~-i~~e~v  224 (369)
                      +.+++++..+.+. |+.+++
T Consensus       367 n~ierav~~~~~~~i~~~~l  386 (457)
T PRK11361        367 NVIERAVVMNSGPIIFSEDL  386 (457)
T ss_pred             HHHHHHHHHCCCCCCCHHHC
T ss_conf             99999998289981566768


No 138
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.51  E-value=2.6e-07  Score=74.02  Aligned_cols=197  Identities=26%  Similarity=0.402  Sum_probs=113.6

Q ss_pred             CCCHHHHHHHHHHHHHC---CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf             92848999999999982---876706201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKS---GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV   77 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~---~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~   77 (369)
                      +||....-+.++..++.   +..|  .|+.|++|+||..+|+.+.+ + +... ...|-+..     +|-.+..+ . -.
T Consensus        80 LIG~~~~~~~~~eqik~~ap~~~~--vLi~GetGtGKel~A~~iH~-~-s~r~-~~~PFI~~-----NCa~~~en-~-~~  147 (403)
T COG1221          80 LIGESPSLQELREQIKAYAPSGLP--VLIIGETGTGKELFARLIHA-L-SARR-AEAPFIAF-----NCAAYSEN-L-QE  147 (403)
T ss_pred             HHCCCHHHHHHHHHHHHHCCCCCC--EEEECCCCCCHHHHHHHHHH-H-HHCC-CCCCEEEE-----EHHHHCCC-H-HH
T ss_conf             635688899999999861899984--79866887538899999998-6-1213-58987997-----77773767-7-77


Q ss_pred             CCC----CCCCCCCHHHHH-HHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHH-----------CCCCCCEEE
Q ss_conf             224----533223345556-6555445654204652377511566480016789999972-----------122111466
Q 537021.9.peg.4   78 VEL----DAASHTSIDDVR-EIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEE-----------PPPHVKFIF  141 (369)
Q Consensus        78 ~e~----~~~s~~~id~ir-~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEE-----------Pp~~~~fil  141 (369)
                      .|+    .|| -+|-+.-| -+.+       .++-...++||.|+|....|-.||++|||           .|.+|.+|.
T Consensus       148 ~eLFG~~kGa-ftGa~~~k~Glfe-------~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~  219 (403)
T COG1221         148 AELFGHEKGA-FTGAQGGKAGLFE-------QANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLIC  219 (403)
T ss_pred             HHHHCCCCCE-EECCCCCCCCHHE-------ECCCCEEEHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCEEEE
T ss_conf             7773200000-0256678676420-------5279777656365379858999999987186576688888677740451


Q ss_pred             EECC--CCCCCH--HHHHHHHHHH--CCCCCC--HHHHHHHH----HHHHHCCCC---CCHHHH-HHHHHCCCCCCCHHH
Q ss_conf             5067--543303--5675433321--024540--01356787----643101345---625664-456531676420011
Q 537021.9.peg.4  142 ATTE--IRKIPI--TVLSRCQRFD--LHRISI--GDLIELFT----KILQEESIE---FDPEAV-AMIARASDGSARDGL  205 (369)
Q Consensus       142 ~t~~--~~~ll~--TI~SRcq~~~--f~~l~~--~~i~~~L~----~i~~~E~i~---~d~~~l-~~ia~~s~GslR~Al  205 (369)
                      +|+.  ++.++.  |...|+-.+.  ++|+..  .||...+.    ..+.+-+..   ..++++ .++.....||+|.-.
T Consensus       220 AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELk  299 (403)
T COG1221         220 ATTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELK  299 (403)
T ss_pred             CCCCCHHHHHHHHCCHHHHHCCCEECCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHH
T ss_conf             35668799987405255641675431897243555599999999999999739998888899999998488998399999


Q ss_pred             HCCCCCCCHHHC
Q ss_conf             000111000000
Q 537021.9.peg.4  206 SLLDQAIARCND  217 (369)
Q Consensus       206 ~lLeq~i~~~~~  217 (369)
                      |..+.+++.+..
T Consensus       300 N~Ve~~~~~~~~  311 (403)
T COG1221         300 NLVERAVAQASG  311 (403)
T ss_pred             HHHHHHHHHHCC
T ss_conf             999999997354


No 139
>KOG0738 consensus
Probab=98.50  E-value=2.8e-06  Score=66.48  Aligned_cols=167  Identities=24%  Similarity=0.270  Sum_probs=105.2

Q ss_pred             CCCHHHHHHHHHHHHH----------CCCCC-EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             9284899999999998----------28767-062010787988889999999996146877788665878999779999
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFK----------SGRIA-QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAI   69 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~----------~~~~~-ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i   69 (369)
                      |.|-+.+++.|+.+|.          ..|=| .+.|+.||||+|||.+|+++|-.  |....++                
T Consensus       214 Iagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATE--c~tTFFN----------------  275 (491)
T KOG0738         214 IAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATE--CGTTFFN----------------  275 (491)
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH--HCCEEEE----------------
T ss_conf             3164999999998875444248887424465300055679997478999999886--1672787----------------


Q ss_pred             HCCCCCCCCCCCCCCCC-C--HHHHHHHHHHHH-HHHHCCCCCEEEEECHHHCCCC------------HHHHHH------
Q ss_conf             77987782224533223-3--455566555445-6542046523775115664800------------167899------
Q 537021.9.peg.4   70 IRGNHVDVVELDAASHT-S--IDDVREIIDQIY-YKPISARFRVYIMDEVQMLSTA------------AFNGLL------  127 (369)
Q Consensus        70 ~~~~~~d~~e~~~~s~~-~--id~ir~l~~~~~-~~p~~~~~kv~iid~a~~m~~~------------a~NaLL------  127 (369)
                             |---+-.|+- |  =.=||-|-+-+. |.|+     +|+|||.|.+..+            --+-||      
T Consensus       276 -------VSsstltSKwRGeSEKlvRlLFemARfyAPS-----tIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~  343 (491)
T KOG0738         276 -------VSSSTLTSKWRGESEKLVRLLFEMARFYAPS-----TIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGV  343 (491)
T ss_pred             -------ECHHHHHHHHCCCHHHHHHHHHHHHHHHCCC-----EEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             -------4024565553252699999999999874885-----3533567788725798650367888888999986334


Q ss_pred             -HHHHHCCCCCCEEEEECC-CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
Q ss_conf             -999721221114665067-543303567543332102454001356787643101345625664456531676
Q 537021.9.peg.4  128 -KTLEEPPPHVKFIFATTE-IRKIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDG  199 (369)
Q Consensus       128 -K~lEEPp~~~~fil~t~~-~~~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~G  199 (369)
                       +++|.  ..++|+|++|| |=.|=+..|-|--.==+-|+|..+-...|-+++-.+-..-++-.++.||..++|
T Consensus       344 ~~t~e~--~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eG  415 (491)
T KOG0738         344 QGTLEN--SKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEG  415 (491)
T ss_pred             CCCCCC--CEEEEEEECCCCCCCHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCC
T ss_conf             444456--516999843689820579999987630331287878999999976235668887569999998568


No 140
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.49  E-value=2.3e-06  Score=67.09  Aligned_cols=206  Identities=19%  Similarity=0.241  Sum_probs=115.3

Q ss_pred             CCCHHHHHHHHHHHHHC-CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCHHHHHHHC--CCCCC
Q ss_conf             92848999999999982-87670620107879888899999999961468777886658-7899977999977--98778
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKS-GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVE-FEGFGEHCQAIIR--GNHVD   76 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~-~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~-~c~~c~~c~~i~~--~~~~d   76 (369)
                      +||+..+.+.+.+.+.. .+.....|++|+.|+||..+|+++=    ..+.....|.+. -|+.-+. ..+..  ..|  
T Consensus       140 liG~S~~m~~v~~~i~~~a~~~~pVLI~GE~GTGK~~~Ar~IH----~~S~r~~~pfi~vnC~~~~~-~~~e~eLFG~--  212 (469)
T PRK10923        140 IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH----RHSPRAKAPFIALNMAAIPK-DLIESELFGH--  212 (469)
T ss_pred             CEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHH----HCCCCCCCCCEEEECCCCCH-HHHHHHHHCC--
T ss_conf             5468999999999999985889978998989826999999999----74887799957876788997-7899997087--


Q ss_pred             CCCCCCCCCCCHHHHH-HHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC-----------CCCCCEEEEEC
Q ss_conf             2224533223345556-65554456542046523775115664800167899999721-----------22111466506
Q 537021.9.peg.4   77 VVELDAASHTSIDDVR-EIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP-----------PPHVKFIFATT  144 (369)
Q Consensus        77 ~~e~~~~s~~~id~ir-~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP-----------p~~~~fil~t~  144 (369)
                        + .++ -+|.++.+ -+.+       ++..=.+++||.+.|+.+.|..||..||+-           +.++.+|.+|+
T Consensus       213 --~-~ga-f~ga~~~~~g~~e-------~a~~GTLfLdeI~~L~~~~Q~kLl~~L~~~~~~~~g~~~~~~~d~RiIaat~  281 (469)
T PRK10923        213 --E-KGA-FTGANTIRQGRFE-------QADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATH  281 (469)
T ss_pred             --C-CCC-CCCCCCCCCCCHH-------HCCCCCEEHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCEEEECCEEEEECC
T ss_conf             --6-678-7886424587366-------4389926566366489999999999985593785799851221437997078


Q ss_pred             CC-------CCCCHHHHHHHH--HHHCCCCCC--HHHHHH----HHHHHHHCC---CCCCHHHHHHH-HHCCCCCCCHHH
Q ss_conf             75-------433035675433--321024540--013567----876431013---45625664456-531676420011
Q 537021.9.peg.4  145 EI-------RKIPITVLSRCQ--RFDLHRISI--GDLIEL----FTKILQEES---IEFDPEAVAMI-ARASDGSARDGL  205 (369)
Q Consensus       145 ~~-------~~ll~TI~SRcq--~~~f~~l~~--~~i~~~----L~~i~~~E~---i~~d~~~l~~i-a~~s~GslR~Al  205 (369)
                      ..       +.+.+-+--|-.  .+.++|+..  ++|...    |.+.+...+   ..+++++++.+ .+-.-||+|.--
T Consensus       282 ~~L~~~v~~g~Fr~dLyyrL~~~~I~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~  361 (469)
T PRK10923        282 QNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE  361 (469)
T ss_pred             CCHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHH
T ss_conf             79999866081779999864424015846544653499999999999999859997878999999997499998799999


Q ss_pred             HCCCCCCCHHHC-CCCHHHH
Q ss_conf             000111000000-1210322
Q 537021.9.peg.4  206 SLLDQAIARCND-KIVTSSV  224 (369)
Q Consensus       206 ~lLeq~i~~~~~-~i~~e~v  224 (369)
                      +.+++++..+.+ .++.+++
T Consensus       362 n~ier~~~~~~~~~i~~~dl  381 (469)
T PRK10923        362 NTCRWLTVMAAGQEVLIQDL  381 (469)
T ss_pred             HHHHHHHHHCCCCCCCHHHC
T ss_conf             99999998579982547757


No 141
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.48  E-value=6.9e-07  Score=70.93  Aligned_cols=198  Identities=15%  Similarity=0.214  Sum_probs=105.5

Q ss_pred             CCCHHHHHHHHHHHHH-CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHHC---CCCC
Q ss_conf             9284899999999998-28767062010787988889999999996146877788665-87899977999977---9877
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFK-SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV-EFEGFGEHCQAIIR---GNHV   75 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~-~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~-~~c~~c~~c~~i~~---~~~~   75 (369)
                      +||+....+.+...+. -.+-....|++|.+|+||..+|+++-..    +.....|-+ --|..-+. ..+..   |.  
T Consensus         8 liG~S~~m~~v~~~~~~~A~~~~pVLI~GE~GtGK~~~Ar~IH~~----S~r~~~pfi~v~C~~l~~-~~~e~~LFG~--   80 (325)
T PRK11608          8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL----SSRWQGPFISLNCAALNE-NLLDSELFGH--   80 (325)
T ss_pred             CEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHC----CCCCCCCCEEEECCCCCH-HHHHHHHCCC--
T ss_conf             858999999999999999688999898898983799999999965----886799977887798997-7889987277--


Q ss_pred             CCCCCCCCCCCCHHH-HHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC-----------CCCCCEEEEE
Q ss_conf             822245332233455-5665554456542046523775115664800167899999721-----------2211146650
Q 537021.9.peg.4   76 DVVELDAASHTSIDD-VREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP-----------PPHVKFIFAT  143 (369)
Q Consensus        76 d~~e~~~~s~~~id~-ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP-----------p~~~~fil~t  143 (369)
                         +..+.  ++... -..+.     --..|  =.+++|+.+.|+...|..||+.||+.           +.++.+|-+|
T Consensus        81 ---~~g~~--~~~~~~~~g~l-----e~a~g--GTL~L~eI~~l~~~~Q~~Ll~~l~~~~~~r~g~~~~~~~~~RiIa~t  148 (325)
T PRK11608         81 ---EAGAF--TGAQKRHPGRF-----ERADG--GTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCAT  148 (325)
T ss_pred             ---CCCCC--CCCCCCCCCHH-----HCCCC--CEEEEECHHHCCHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEECC
T ss_conf             ---55676--77532468734-----35689--86997374547999999999998649088579987665646887133


Q ss_pred             CC-CCCCC------HHHHHHH--HHHHCCCCCC--HHHHH----HHHHHHHHCCC----CCCHHHHHHH-HHCCCCCCCH
Q ss_conf             67-54330------3567543--3321024540--01356----78764310134----5625664456-5316764200
Q 537021.9.peg.4  144 TE-IRKIP------ITVLSRC--QRFDLHRISI--GDLIE----LFTKILQEESI----EFDPEAVAMI-ARASDGSARD  203 (369)
Q Consensus       144 ~~-~~~ll------~TI~SRc--q~~~f~~l~~--~~i~~----~L~~i~~~E~i----~~d~~~l~~i-a~~s~GslR~  203 (369)
                      +. +..+.      +-.-.|-  ..+.++|+..  ++|..    ++.+.+...+.    .+++++++.+ .+-.-||+|.
T Consensus       149 ~~~l~~lv~~g~fr~dLy~rL~~~~I~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrE  228 (325)
T PRK11608        149 NADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRE  228 (325)
T ss_pred             CHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHH
T ss_conf             22089999839567999856530111586845471019999999999999982999888889999999961999965999


Q ss_pred             HHHCCCCCCCHHHC
Q ss_conf             11000111000000
Q 537021.9.peg.4  204 GLSLLDQAIARCND  217 (369)
Q Consensus       204 Al~lLeq~i~~~~~  217 (369)
                      --+.+++++....+
T Consensus       229 L~n~ierav~~~~~  242 (325)
T PRK11608        229 LKNVVERSVYRHGT  242 (325)
T ss_pred             HHHHHHHHHHHCCC
T ss_conf             99999999985688


No 142
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.47  E-value=1.5e-06  Score=68.41  Aligned_cols=197  Identities=15%  Similarity=0.234  Sum_probs=111.0

Q ss_pred             CCCHHHHHHHHHHHHH-CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHHCCCCCCCC
Q ss_conf             9284899999999998-28767062010787988889999999996146877788665-878999779999779877822
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFK-SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV-EFEGFGEHCQAIIRGNHVDVV   78 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~-~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~-~~c~~c~~c~~i~~~~~~d~~   78 (369)
                      |||+....+.+....+ --...-..|++|..|+||..+|+++-    ..+.....|-. --|+.-+.          ++.
T Consensus       206 iig~S~~m~~v~~~a~r~A~~d~pVLI~GEsGTGKellAraIH----~~S~R~~~pFv~vnC~alp~----------~l~  271 (513)
T PRK10820        206 IVAVSPKMKHVVEQARKLAMLSAPLLITGDTGTGKDLFAYACH----LASPRAKKPYLALNCASIPE----------DAV  271 (513)
T ss_pred             HEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHH----HCCCCCCCCCEEEECCCCCH----------HHH
T ss_conf             5108999999999999985989988998989824999999999----66887899826888998996----------789


Q ss_pred             C--CCC---CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC-----------CCCCCEEEE
Q ss_conf             2--453---322334555665554456542046523775115664800167899999721-----------221114665
Q 537021.9.peg.4   79 E--LDA---ASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP-----------PPHVKFIFA  142 (369)
Q Consensus        79 e--~~~---~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP-----------p~~~~fil~  142 (369)
                      |  +-|   .++.|.           +.  .+..-.+++||.+.|+.+.|-.||+.|+|.           |-++.+|-+
T Consensus       272 eseLFG~a~~~~~G~-----------fe--~A~gGTLfLdEI~~l~~~~Q~kLLr~Lq~~~~~rvG~~~~~~~dvRiIaa  338 (513)
T PRK10820        272 ESELFGHAPEGKKGF-----------FE--QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICA  338 (513)
T ss_pred             HHHHCCCCCCCCCCC-----------EE--ECCCCEEEEECHHHCCHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEEC
T ss_conf             998638766688975-----------57--85898899978365999999999999868979965998535677899962


Q ss_pred             ECCC-CC------CCHHHHHHH--HHHHCCCCCC--HHHH----HHHHHHHHHCCC---CCCHHHHHHH-HHCCCCCCCH
Q ss_conf             0675-43------303567543--3321024540--0135----678764310134---5625664456-5316764200
Q 537021.9.peg.4  143 TTEI-RK------IPITVLSRC--QRFDLHRISI--GDLI----ELFTKILQEESI---EFDPEAVAMI-ARASDGSARD  203 (369)
Q Consensus       143 t~~~-~~------ll~TI~SRc--q~~~f~~l~~--~~i~----~~L~~i~~~E~i---~~d~~~l~~i-a~~s~GslR~  203 (369)
                      |+.. ..      +-+-.--|-  ..+.++|+..  ++|.    .++.+.+.+.|.   .++++++..+ .+-.-||+|.
T Consensus       339 T~~dL~~lv~~g~FReDLyyRL~v~~I~lPpLReR~eDI~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNVRE  418 (513)
T PRK10820        339 TQKNLVELVQKGLFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLSADLSTVLTRYGWPGNVRQ  418 (513)
T ss_pred             CCHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHH
T ss_conf             65309999872985088999861672558883446556999999999999997599989847999999970899979999


Q ss_pred             HHHCCCCCCCHHHC-CCCHHHH
Q ss_conf             11000111000000-1210322
Q 537021.9.peg.4  204 GLSLLDQAIARCND-KIVTSSV  224 (369)
Q Consensus       204 Al~lLeq~i~~~~~-~i~~e~v  224 (369)
                      --|.+++++..+++ .++.+++
T Consensus       419 L~n~iera~~~~~g~~i~~~di  440 (513)
T PRK10820        419 LKNAIYRALTQLEGYELRPQDI  440 (513)
T ss_pred             HHHHHHHHHHHCCCCCCCHHHC
T ss_conf             9999999999579985349982


No 143
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.46  E-value=3.9e-06  Score=65.42  Aligned_cols=135  Identities=21%  Similarity=0.351  Sum_probs=92.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCC--------CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHC-
Q ss_conf             92848999999999982876--------706201078798888999999999614687778866587899977999977-
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRI--------AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIR-   71 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~--------~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~-   71 (369)
                      ||||+++++.+.++|+..|.        --++||.||.|+|||-+|+++|..|+-......  ..+- ..-..-+.++. 
T Consensus       493 ViGQd~AV~~v~~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~ali--R~DM-SEy~EkHsVSrL  569 (786)
T COG0542         493 VIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALI--RIDM-SEYMEKHSVSRL  569 (786)
T ss_pred             EECHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCE--EECH-HHHHHHHHHHHH
T ss_conf             0173999999999999985699999987357886678865699999999999659974445--5456-877778779987


Q ss_pred             -CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC-----------CCCCE
Q ss_conf             -987782224533223345556655544565420465237751156648001678999997212-----------21114
Q 537021.9.peg.4   72 -GNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP-----------PHVKF  139 (369)
Q Consensus        72 -~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp-----------~~~~f  139 (369)
                       |.-|-+        .|-|+=-.|.+.++.+||+    |+++||.|+=.++-+|-||-.|+.--           .||++
T Consensus       570 IGaPPGY--------VGyeeGG~LTEaVRr~PyS----ViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiI  637 (786)
T COG0542         570 IGAPPGY--------VGYEEGGQLTEAVRRKPYS----VILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTII  637 (786)
T ss_pred             HCCCCCC--------CEECCCCCHHHHHHCCCCE----EEEECHHHHCCHHHHHHHHHHHCCCCEECCCCCEEECCEEEE
T ss_conf             2799987--------2006554003766069986----888412644088999999998467805548998884300289


Q ss_pred             EEEECCCCCCC
Q ss_conf             66506754330
Q 537021.9.peg.4  140 IFATTEIRKIP  150 (369)
Q Consensus       140 il~t~~~~~ll  150 (369)
                      |+++|--...+
T Consensus       638 ImTSN~Gs~~i  648 (786)
T COG0542         638 IMTSNAGSEEI  648 (786)
T ss_pred             EEECCCCHHHH
T ss_conf             98450265989


No 144
>KOG0743 consensus
Probab=98.45  E-value=6.6e-07  Score=71.07  Aligned_cols=137  Identities=20%  Similarity=0.364  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHCC----CCC----EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf             9999999999828----767----06201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4    6 PMIKTLTNAFKSG----RIA----QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV   77 (369)
Q Consensus         6 ~~~~~l~~~~~~~----~~~----ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~   77 (369)
                      .|+.-|..+++..    |++    -.||++||||+||+|+.-++|..|++.                            +
T Consensus       212 ~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~yd----------------------------I  263 (457)
T KOG0743         212 RIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYD----------------------------I  263 (457)
T ss_pred             HHHHHHHHHHHCCHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCC----------------------------E
T ss_conf             999999999722357886484500041204799998889999997205873----------------------------6


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHC---CC---------------CHHHHHHHHHHHCCCCC--
Q ss_conf             22453322334555665554456542046523775115664---80---------------01678999997212211--
Q 537021.9.peg.4   78 VELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQML---ST---------------AAFNGLLKTLEEPPPHV--  137 (369)
Q Consensus        78 ~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m---~~---------------~a~NaLLK~lEEPp~~~--  137 (369)
                      .-++-++...=++.|.|+-..   |.   .-|++|++.|.=   +.               -+.-.||..+.=.-..+  
T Consensus       264 ydLeLt~v~~n~dLr~LL~~t---~~---kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~  337 (457)
T KOG0743         264 YDLELTEVKLDSDLRHLLLAT---PN---KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGD  337 (457)
T ss_pred             EEEEECCCCCCHHHHHHHHHC---CC---CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHCCCCCCCCC
T ss_conf             774400236838999999728---99---718999612432304434555664546776606647756641343004887


Q ss_pred             --CEEEEECCCCCCCHHHHH--HH-HHHHCCCCCCHHHHHHHHH
Q ss_conf             --146650675433035675--43-3321024540013567876
Q 537021.9.peg.4  138 --KFIFATTEIRKIPITVLS--RC-QRFDLHRISIGDLIELFTK  176 (369)
Q Consensus       138 --~fil~t~~~~~ll~TI~S--Rc-q~~~f~~l~~~~i~~~L~~  176 (369)
                        ++||+|+.++||=|++.=  |. -++.+.-.+.+.......+
T Consensus       338 ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~n  381 (457)
T KOG0743         338 ERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASN  381 (457)
T ss_pred             CEEEEEECCCHHHCCHHHCCCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf             34999946871006886628875225667266987999999998


No 145
>PRK09087 hypothetical protein; Validated
Probab=98.45  E-value=2.2e-06  Score=67.26  Aligned_cols=181  Identities=12%  Similarity=0.149  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf             48999999999982876706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4    4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA   83 (369)
Q Consensus         4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~   83 (369)
                      ++.++..+.+ ....--+ ...++||.|+|||-++.++++.-++..                              +++ 
T Consensus        29 N~~a~~~l~~-~~~w~~~-~~~L~Gp~gsGKTHL~~~~~~~~~a~~------------------------------~~~-   75 (226)
T PRK09087         29 NRAAVSLVDR-WPNWPSP-VVVLAGPVGSGKTHLASIWREKADALL------------------------------VHP-   75 (226)
T ss_pred             HHHHHHHHHH-CCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCEE------------------------------ECH-
T ss_conf             9999999984-7267777-589989999988699999999809968------------------------------366-


Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC-CCCCEEEEECC-CCC---CCHHHHHHH-
Q ss_conf             223345556655544565420465237751156648001678999997212-21114665067-543---303567543-
Q 537021.9.peg.4   84 SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP-PHVKFIFATTE-IRK---IPITVLSRC-  157 (369)
Q Consensus        84 s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp-~~~~fil~t~~-~~~---ll~TI~SRc-  157 (369)
                      .....+    .   .    .....+.++||++|....+ ..+|.-++.+-- .+..+++++.. |..   -+|=.+||. 
T Consensus        76 ~~~~~~----~---~----~~~~~~~~~idd~d~~~~d-Ee~LFhl~N~~~~~~~~LLlts~~~p~~l~~~L~DL~SRL~  143 (226)
T PRK09087         76 NEIGSD----A---A----NAAAERPVLIEDIDAGGFD-ETGLFHLINSVRQAGTSLLMTSRLWPSAWNVKLPDLKSRLK  143 (226)
T ss_pred             HHCCHH----H---H----HHHCCCCEEEECCCCCCCC-HHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHH
T ss_conf             874746----6---7----6532798899748777747-89999999999853987999889895666762468999985


Q ss_pred             --HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCC---CCCHHHCCCCHHHHHHCCC
Q ss_conf             --33210245400135678764310134562566445653167642001100011---1000000121032200013
Q 537021.9.peg.4  158 --QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQ---AIARCNDKIVTSSVRLMLA  229 (369)
Q Consensus       158 --q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq---~i~~~~~~i~~e~v~~llg  229 (369)
                        ..+.+.+++++.+...|.+.+..-|+.++++.+..|++..+=|+..+..++++   .......+||..-+.+++.
T Consensus       144 ~~~~~~I~~pdD~ll~~~L~k~~~~r~l~l~~~v~~yll~r~~Rs~~~l~~~l~~LD~~SL~~kr~ITiplikevL~  220 (226)
T PRK09087        144 AATVVEIGEPDDALLSGVIFKLFADRQLYVEPHVVYYLVSRMERSLFAAQTIVERLDRLALERKSRITRALAAEVLN  220 (226)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             78579835999899999999998757657888899999984588999999999999999998189998999999998


No 146
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=98.44  E-value=5e-07  Score=71.95  Aligned_cols=88  Identities=19%  Similarity=0.265  Sum_probs=48.7

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC---CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             2010787988889999999996146877788665878999779999779877822---2453322334555665554456
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVV---ELDAASHTSIDDVREIIDQIYY  100 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~---e~~~~s~~~id~ir~l~~~~~~  100 (369)
                      .||+||+|+|||++|+.+|+.+. ..+...    -.|+..-+        --|++   .+.. +  +.    ...+..-.
T Consensus         2 vll~Gp~G~GKT~la~~la~~l~-~~~~~~----i~~~~~~~--------~~dl~G~~~~~~-~--~~----~~~~g~l~   61 (139)
T pfam07728         2 VLLVGPPGTGKSELAERLAAALS-NRPVFY----VQLTRDTT--------EEDLKGRRNIAN-G--TT----SWVDGPLV   61 (139)
T ss_pred             EEEECCCCCHHHHHHHHHHHHCC-CCCCHH----HCCCCCCC--------HHHCCCCEECCC-C--CE----EEECCHHH
T ss_conf             89998997569999999999807-983111----21465565--------222057342379-9--35----78155141


Q ss_pred             HHHCCCCCEEEEECHHHCCCCHHHHHHHHHHH
Q ss_conf             54204652377511566480016789999972
Q 537021.9.peg.4  101 KPISARFRVYIMDEVQMLSTAAFNGLLKTLEE  132 (369)
Q Consensus       101 ~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEE  132 (369)
                      ...+ .-.|+++||.++++.+.+++|+..||+
T Consensus        62 ~a~~-~g~vl~lDEin~a~~~v~~~L~~~le~   92 (139)
T pfam07728        62 RAAR-EGEIAVLDEINRANPDVLNSLLSLLDE   92 (139)
T ss_pred             CCCC-CCCEEEECCHHHCCHHHHHHHHHHHCC
T ss_conf             0101-286899634344899999999999748


No 147
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.42  E-value=3.6e-07  Score=73.00  Aligned_cols=116  Identities=23%  Similarity=0.216  Sum_probs=64.6

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             70620107879888899999999961468777886658789997799997798778222453322334555665554456
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYY  100 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~  100 (369)
                      ++.+++.||+|+|||++++.+|+.+.+....    +...+............ .......+.....++..++.+.+.+..
T Consensus         2 ~~~ill~G~~GsGKTtl~~~la~~~~~~~~~----v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPGGG----VIYIDGEDILEEVLDQL-LLIIVGGKKASGSGELRLRLALALARK   76 (148)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHCCCCCC----EEEEEHHHHHHHHHHHH-HHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             9789999999702999999999872668996----89987599898889876-530001122105199999999999984


Q ss_pred             HHHCCCCCEEEEECHHHCCCCHHHHHHHH--------HHHCCCCCCEEEEECC
Q ss_conf             54204652377511566480016789999--------9721221114665067
Q 537021.9.peg.4  101 KPISARFRVYIMDEVQMLSTAAFNGLLKT--------LEEPPPHVKFIFATTE  145 (369)
Q Consensus       101 ~p~~~~~kv~iid~a~~m~~~a~NaLLK~--------lEEPp~~~~fil~t~~  145 (369)
                      .+    +.|++|||++.+.......++..        ...+..+..+|++++.
T Consensus        77 ~~----~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~n~  125 (148)
T smart00382       77 LK----PDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND  125 (148)
T ss_pred             CC----CCEEEEECCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECC
T ss_conf             49----98999827502147620799999999998517657899899995699


No 148
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.42  E-value=1.6e-07  Score=75.53  Aligned_cols=108  Identities=28%  Similarity=0.384  Sum_probs=67.9

Q ss_pred             CCCHHHHHHHHHHHH-------HCC-C-----CCE-EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             928489999999999-------828-7-----670-62010787988889999999996146877788665878999779
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAF-------KSG-R-----IAQ-SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHC   66 (369)
Q Consensus         1 iiGq~~~~~~l~~~~-------~~~-~-----~~h-a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c   66 (369)
                      ||||+.+++.|.-++       ..+ .     +.. ..|+-||.|+|||.+|..+|+.||-.-.-.+..+.         
T Consensus        63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtL---------  133 (408)
T COG1219          63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTL---------  133 (408)
T ss_pred             EECCHHHHCEEEEEEEHHHHHHHCCCCCCCEEEEECCEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCH---------
T ss_conf             32625431034664106889986048877635320317998889975779999999984898475144412---------


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCHHHHHH----HHHHHHHHHHCCCCCEEEEECHHHCCCC--------------HHHHHHH
Q ss_conf             999779877822245332233455566----5554456542046523775115664800--------------1678999
Q 537021.9.peg.4   67 QAIIRGNHVDVVELDAASHTSIDDVRE----IIDQIYYKPISARFRVYIMDEVQMLSTA--------------AFNGLLK  128 (369)
Q Consensus        67 ~~i~~~~~~d~~e~~~~s~~~id~ir~----l~~~~~~~p~~~~~kv~iid~a~~m~~~--------------a~NaLLK  128 (369)
                        -.            |+-.| |++.+    |+..+-|--..+.+-|+.|||.|+..+-              -|.||||
T Consensus       134 --TE------------AGYVG-EDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSen~SITRDVSGEGVQQALLK  198 (408)
T COG1219         134 --TE------------AGYVG-EDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLK  198 (408)
T ss_pred             --HH------------CCCCC-HHHHHHHHHHHHHCCCCHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             --10------------66355-0089999999987645888882885998510254205789872343673589999999


Q ss_pred             HHHH
Q ss_conf             9972
Q 537021.9.peg.4  129 TLEE  132 (369)
Q Consensus       129 ~lEE  132 (369)
                      .+|-
T Consensus       199 iiEG  202 (408)
T COG1219         199 IIEG  202 (408)
T ss_pred             HHCC
T ss_conf             9707


No 149
>pfam01078 Mg_chelatase Magnesium chelatase, subunit ChlI. Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Probab=98.41  E-value=1.4e-06  Score=68.62  Aligned_cols=114  Identities=23%  Similarity=0.275  Sum_probs=64.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHC--CC-----
Q ss_conf             92848999999999982876706201078798888999999999614687778866587899977999977--98-----
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIR--GN-----   73 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~--~~-----   73 (369)
                      |+||+.++..|.-+..-+   |.+|+.||||+|||++|+.++.-|-    ..     ... +.-.+..|.+  |.     
T Consensus         5 i~GQ~~akrAl~iAaaG~---H~lLl~GpPG~GKTmlA~rl~~iLP----~l-----~~~-e~le~~~i~S~~g~~~~~~   71 (207)
T pfam01078         5 VKGQEQAKRALEIAAAGG---HNLLMIGPPGSGKTMLAKRLPGILP----PL-----TEQ-EALEVTAIHSVAGLGGDGG   71 (207)
T ss_pred             HCCCHHHHHHHHHHHCCC---CCEEEECCCCCCHHHHHHHHHCCCC----CC-----CHH-HHHHHHHHHCCCCCCCCCC
T ss_conf             638599999999985478---7589788998029999976301489----98-----789-9887776423036877777


Q ss_pred             ---CCCCCCCCCCCCCCHHHHHHHHHH-HHHHH---HCCCCCEEEEECHHHCCCCHHHHHHHHHHH
Q ss_conf             ---778222453322334555665554-45654---204652377511566480016789999972
Q 537021.9.peg.4   74 ---HVDVVELDAASHTSIDDVREIIDQ-IYYKP---ISARFRVYIMDEVQMLSTAAFNGLLKTLEE  132 (369)
Q Consensus        74 ---~~d~~e~~~~s~~~id~ir~l~~~-~~~~p---~~~~~kv~iid~a~~m~~~a~NaLLK~lEE  132 (369)
                         ++-+...    |.++- ...++.. ...+|   +.+..=|.++||+..++....++|+.-||+
T Consensus        72 l~~~rPfr~P----Hhs~s-~~aliGGg~~~~PGeIslAH~GVLFLDE~~Ef~~~vle~LrqpLE~  132 (207)
T pfam01078        72 LIRRRPFRAP----HHSAS-AAALVGGGSIPRPGEISLAHNGVLFLDELPEFSRRVLESLRQPLED  132 (207)
T ss_pred             CCCCCCCCCC----CCCCC-HHHCCCCCCCCCCCCEEECCCCEEEECCHHHCCHHHHHHHHHHHCC
T ss_conf             4457986578----87643-6332268888999706663687888476465398899999876604


No 150
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487   ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent  molecular chaperone and is the regulatory subunit of the ClpXP protease .   ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates .    The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA .  ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=98.38  E-value=6.3e-07  Score=71.21  Aligned_cols=111  Identities=30%  Similarity=0.436  Sum_probs=70.8

Q ss_pred             CCCHHHHHHHHHHHH----------HCC-C-----------------C--CEEEHHCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             928489999999999----------828-7-----------------6--706201078798888999999999614687
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAF----------KSG-R-----------------I--AQSYMLSGTRGIGKTTTARIIARSLNYKTA   50 (369)
Q Consensus         1 iiGq~~~~~~l~~~~----------~~~-~-----------------~--~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~   50 (369)
                      ||||+++++.|.=||          ++| +                 |  +. .|+-||.|+|||.+|..||+.||-.-.
T Consensus       103 VIGQe~AKKVLsVAVYNHYKRl~~~~~n~~~d~~D~nvelehleeVEL~KSN-ILLiGPTGSGKTLLAqTLA~~L~VPfA  181 (452)
T TIGR00382       103 VIGQEQAKKVLSVAVYNHYKRLNLKEKNKKSDNGDSNVELEHLEEVELSKSN-ILLIGPTGSGKTLLAQTLARILNVPFA  181 (452)
T ss_pred             CCCCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECCCCCCHHHHHHHHHHHCCCCEE
T ss_conf             1231010525432411246665324304555884000235444443330066-245468885268999999987388742


Q ss_pred             CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH----HHHHHHHHHHCCCCCEEEEECHHHCC-------
Q ss_conf             7788665878999779999779877822245332233455566----55544565420465237751156648-------
Q 537021.9.peg.4   51 HIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVRE----IIDQIYYKPISARFRVYIMDEVQMLS-------  119 (369)
Q Consensus        51 ~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~----l~~~~~~~p~~~~~kv~iid~a~~m~-------  119 (369)
                      -.+.-+..           .            |+=-| |||-+    |+..+-|--..+.+=|+.|||.|+.+       
T Consensus       182 iADATtLT-----------E------------AGYVG-EDVENIL~~Llq~ad~DV~kA~kGIiYIDEIDKIaRkSEN~S  237 (452)
T TIGR00382       182 IADATTLT-----------E------------AGYVG-EDVENILLKLLQAADYDVEKAQKGIIYIDEIDKIARKSENPS  237 (452)
T ss_pred             ECCHHHHH-----------C------------CCCCC-CCHHHHHHHHHHHCCCCHHHHCCCEEEEECCCCHHHHCCCCE
T ss_conf             11111020-----------0------------66424-228899999987414552452785089842231012157780


Q ss_pred             -------CCHHHHHHHHHHH-----CCCC
Q ss_conf             -------0016789999972-----1221
Q 537021.9.peg.4  120 -------TAAFNGLLKTLEE-----PPPH  136 (369)
Q Consensus       120 -------~~a~NaLLK~lEE-----Pp~~  136 (369)
                             +.-|.||||.+|=     ||.+
T Consensus       238 ITRDVSGEGVQQALLKi~EGTvA~vPPqG  266 (452)
T TIGR00382       238 ITRDVSGEGVQQALLKIIEGTVANVPPQG  266 (452)
T ss_pred             EEEEECCCHHHHHHHHHHHCCEEEECCCC
T ss_conf             11221755499999987603234317544


No 151
>KOG2227 consensus
Probab=98.38  E-value=6.3e-07  Score=71.22  Aligned_cols=200  Identities=18%  Similarity=0.196  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC-CCCCCCCC
Q ss_conf             99999999982876706201078798888999999999614687778866587899977999977987782-22453322
Q 537021.9.peg.4    7 MIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV-VELDAASH   85 (369)
Q Consensus         7 ~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~-~e~~~~s~   85 (369)
                      +...+++.+..+. +-++-.+|-||+||+.+-..+=..+-|+..... .+.-.|-+-..-..+..+.|-.+ .+..+ ..
T Consensus       162 v~~F~~~hle~~t-~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~-~v~inc~sl~~~~aiF~kI~~~~~q~~~s-~~  238 (529)
T KOG2227         162 VREFFSLHLELNT-SGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPV-TVYINCTSLTEASAIFKKIFSSLLQDLVS-PG  238 (529)
T ss_pred             HHHHHHHHHHCCC-CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCE-EEEEEECCCCCHHHHHHHHHHHHHHHHCC-CC
T ss_conf             9999985431266-764575179986548899999874034316651-69985123542588999998889887428-95


Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC---CCCCCEEEEECCC---CCCCHHHHHHH--
Q ss_conf             334555665554456542046523775115664800167899999721---2211146650675---43303567543--
Q 537021.9.peg.4   86 TSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP---PPHVKFIFATTEI---RKIPITVLSRC--  157 (369)
Q Consensus        86 ~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP---p~~~~fil~t~~~---~~ll~TI~SRc--  157 (369)
                      .+.+..+.+.......   ...=|++.||-|.+-...+-+|.-..|=|   ..+.+.|-+++..   +++||++.+||  
T Consensus       239 ~~~~~~~~~~~h~~q~---k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~  315 (529)
T KOG2227         239 TGMQHLEKFEKHTKQS---KFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTI  315 (529)
T ss_pred             HHHHHHHHHHHHHHCC---CCEEEEEECHHHHHHHCCCCEEEEEHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCC
T ss_conf             0478999999987525---6338987212567760465314321001367766056664001355777776665402578


Q ss_pred             --HHHHCCCCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHH---CCCCCCCHHHHCCCCCC
Q ss_conf             --332102454001356787643101345-62566445653---16764200110001110
Q 537021.9.peg.4  158 --QRFDLHRISIGDLIELFTKILQEESIE-FDPEAVAMIAR---ASDGSARDGLSLLDQAI  212 (369)
Q Consensus       158 --q~~~f~~l~~~~i~~~L~~i~~~E~i~-~d~~~l~~ia~---~s~GslR~Al~lLeq~i  212 (369)
                        +.+.|+|.+.++|...|.+-+..+... +-+.+++++|+   ..-|++|+||-+.-.++
T Consensus       316 ~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai  376 (529)
T KOG2227         316 KPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI  376 (529)
T ss_pred             CCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             8746655687889999999999740544333038999999986257612899999998788


No 152
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.37  E-value=4.6e-06  Score=64.82  Aligned_cols=163  Identities=21%  Similarity=0.247  Sum_probs=103.1

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHH-------CCCCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf             928489999999999828767062010787988889999999996-------1468777886658789997799997798
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSL-------NYKTAHIDVPTVEFEGFGEHCQAIIRGN   73 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l-------~c~~~~~~~~~~~~c~~c~~c~~i~~~~   73 (369)
                      ++||+.....|--....-++.-+ |+.|++|+||||+||++|.-|       .|.-+-..  . +|-..|+.|+.-....
T Consensus        19 ivGqd~lk~aL~l~av~P~iggv-LI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP--~-~P~~~c~~c~~k~~e~   94 (423)
T COG1239          19 IVGQDPLKLALGLNAVDPQIGGA-LIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDP--D-DPEEMCDECRAKGDEL   94 (423)
T ss_pred             HCCCHHHHHHHHHHHCCCCCCEE-EEECCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCC--C-CHHHHHHHHHHHCCCC
T ss_conf             43753777887653026310426-876688752779999999867963321688788998--8-7055519998620232


Q ss_pred             CCCC----CC------CCCCCC----CCHHHHHHHHHH-HHHHH---HCCCCCEEEEECHHHCCCCHHHHHHHHHHHC--
Q ss_conf             7782----22------453322----334555665554-45654---2046523775115664800167899999721--
Q 537021.9.peg.4   74 HVDV----VE------LDAASH----TSIDDVREIIDQ-IYYKP---ISARFRVYIMDEVQMLSTAAFNGLLKTLEEP--  133 (369)
Q Consensus        74 ~~d~----~e------~~~~s~----~~id~ir~l~~~-~~~~p---~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP--  133 (369)
                       -++    ..      .++++.    .++|=++-+.+. -.|.|   .++.+-|+.|||.-.+...=+|+||-.++|-  
T Consensus        95 -~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~n  173 (423)
T COG1239          95 -EWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVN  173 (423)
T ss_pred             -CCCCCCCEECCEECCCCCCCHHHHCCCCCHHHHHHCCCCCCCCCCHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf             -4454221003122388763043300456799997268300277511003588798723343518999999999971774


Q ss_pred             ---------CCCCCEEEE-ECCCC--CCCHHHHHH-HHHHHCCCCCCH
Q ss_conf             ---------221114665-06754--330356754-333210245400
Q 537021.9.peg.4  134 ---------PPHVKFIFA-TTEIR--KIPITVLSR-CQRFDLHRISIG  168 (369)
Q Consensus       134 ---------p~~~~fil~-t~~~~--~ll~TI~SR-cq~~~f~~l~~~  168 (369)
                               +-..-|+|+ |.||+  .|-|.++-| -..+...+++.-
T Consensus       174 ~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~  221 (423)
T COG1239         174 DVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDL  221 (423)
T ss_pred             EEEECCEEECCCCCEEEEEECCCCCCCCCHHHHHHHCCEEECCCCCCH
T ss_conf             033575031367617999644854466324667541115623478878


No 153
>KOG0734 consensus
Probab=98.35  E-value=2.6e-06  Score=66.68  Aligned_cols=151  Identities=22%  Similarity=0.330  Sum_probs=89.7

Q ss_pred             CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             28767062010787988889999999996146877788665878999779999779877822245332233455566555
Q 537021.9.peg.4   17 SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIID   96 (369)
Q Consensus        17 ~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~   96 (369)
                      -|++|...|++||||+|||.+||+.|-.    .+.   |..           +.+|+-.|=..+    --|.-.||+|-.
T Consensus       333 GGKLPKGVLLvGPPGTGKTlLARAvAGE----A~V---PFF-----------~~sGSEFdEm~V----GvGArRVRdLF~  390 (752)
T KOG0734         333 GGKLPKGVLLVGPPGTGKTLLARAVAGE----AGV---PFF-----------YASGSEFDEMFV----GVGARRVRDLFA  390 (752)
T ss_pred             CCCCCCCEEEECCCCCCHHHHHHHHHCC----CCC---CEE-----------ECCCCCHHHHHH----CCCHHHHHHHHH
T ss_conf             4758885387689997556999986055----689---747-----------416620445422----014899999999


Q ss_pred             HHHHHHHCCCCCEEEEECHHHC-----------CCCHHHHHHHHHHHC--CCCCCEEEEECCCCCCCHHHHHHHH----H
Q ss_conf             4456542046523775115664-----------800167899999721--2211146650675433035675433----3
Q 537021.9.peg.4   97 QIYYKPISARFRVYIMDEVQML-----------STAAFNGLLKTLEEP--PPHVKFIFATTEIRKIPITVLSRCQ----R  159 (369)
Q Consensus        97 ~~~~~p~~~~~kv~iid~a~~m-----------~~~a~NaLLK~lEEP--p~~~~fil~t~~~~~ll~TI~SRcq----~  159 (369)
                      .+.-+.    .-||+|||.|..           .++.-|-||--|.-.  -+.+++|-+|+-|+.|=+.+. |-=    +
T Consensus       391 aAk~~A----PcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~-RPGRFD~~  465 (752)
T KOG0734         391 AAKARA----PCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALT-RPGRFDRH  465 (752)
T ss_pred             HHHHCC----CEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHC-CCCCCCEE
T ss_conf             987349----8599972002205667862778999899999998428676886699951687455568734-88755336


Q ss_pred             HHCCCCCC---HHH-HHHHHHHHHHCCCCCCHHHHHHHHHCCCC
Q ss_conf             21024540---013-56787643101345625664456531676
Q 537021.9.peg.4  160 FDLHRISI---GDL-IELFTKILQEESIEFDPEAVAMIARASDG  199 (369)
Q Consensus       160 ~~f~~l~~---~~i-~~~L~~i~~~E~i~~d~~~l~~ia~~s~G  199 (369)
                      +..+.++-   .+| ..||.+|...+++  |+   ..||+-.-|
T Consensus       466 v~Vp~PDv~GR~eIL~~yl~ki~~~~~V--D~---~iiARGT~G  504 (752)
T KOG0734         466 VTVPLPDVRGRTEILKLYLSKIPLDEDV--DP---KIIARGTPG  504 (752)
T ss_pred             EECCCCCCCCHHHHHHHHHHCCCCCCCC--CH---HHHCCCCCC
T ss_conf             7468977332899999998348765677--87---672268898


No 154
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=98.35  E-value=5.4e-07  Score=71.70  Aligned_cols=85  Identities=28%  Similarity=0.372  Sum_probs=49.5

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC---CCCCCCCCHHHHHHHHHHHH
Q ss_conf             620107879888899999999961468777886658789997799997798778222---45332233455566555445
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVE---LDAASHTSIDDVREIIDQIY   99 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e---~~~~s~~~id~ir~l~~~~~   99 (369)
                      -.|+.||||+|||++|+.+|+.+...-....      |. ++       -.--|++-   .+...  +     +.  ...
T Consensus         1 hVLL~GppG~GKT~l~~~lA~~~~~~~~~i~------~~-~~-------~~~~Dl~G~~~~~~~~--~-----~~--~~~   57 (131)
T pfam07726         1 HVLLEGVPGLAKTLLARTLARSLGLDFRRIQ------FT-PD-------LLPSDITGTEVYDQKT--R-----EF--EFR   57 (131)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHCCCCEEEE------EC-CC-------CCCCCCCCCEEECCCC--C-----EE--EEE
T ss_conf             9878989987699999999999599816888------33-77-------6700036845423787--4-----08--984


Q ss_pred             HHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHH
Q ss_conf             654204652377511566480016789999972
Q 537021.9.peg.4  100 YKPISARFRVYIMDEVQMLSTAAFNGLLKTLEE  132 (369)
Q Consensus       100 ~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEE  132 (369)
                      -.|.-+  .|+++||.++++.+.+|+||-.|+|
T Consensus        58 ~G~l~~--~vl~lDEin~a~~~v~~~Ll~~l~e   88 (131)
T pfam07726        58 PGPIFA--NVLLADEINRAPPKTQSALLEAMQE   88 (131)
T ss_pred             CCCCCC--CCEEEEHHHCCCHHHHHHHHHHHHC
T ss_conf             573103--7056401203998999999976326


No 155
>KOG1514 consensus
Probab=98.34  E-value=1.6e-05  Score=60.90  Aligned_cols=191  Identities=21%  Similarity=0.335  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             99999999998287670620107879888899999999961468777886658789997799997798778222453322
Q 537021.9.peg.4    6 PMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASH   85 (369)
Q Consensus         6 ~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~   85 (369)
                      .|-..++-++...-.+-++-.+|-||+|||.+.+..-+.|.-...+...|                  -.+++||+|--=
T Consensus       407 ~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p------------------~f~yveINgm~l  468 (767)
T KOG1514         407 EIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELP------------------KFDYVEINGLRL  468 (767)
T ss_pred             HHHHHHHHHCCCCCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHCCCC------------------CCCEEEECCEEE
T ss_conf             99999997627777740799846999883212999999999877505789------------------860798714461


Q ss_pred             CCHHHHH------------------HHHHHHHHH-HHC-CCCCEEEEECHHHCCCCHHHHHHHHHHHCCC---CCCEEEE
Q ss_conf             3345556------------------655544565-420-4652377511566480016789999972122---1114665
Q 537021.9.peg.4   86 TSIDDVR------------------EIIDQIYYK-PIS-ARFRVYIMDEVQMLSTAAFNGLLKTLEEPPP---HVKFIFA  142 (369)
Q Consensus        86 ~~id~ir------------------~l~~~~~~~-p~~-~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~---~~~fil~  142 (369)
                      .+-+++=                  +.++ .++. |-. .+--|++|||.|.|=...|.-|--+++=|..   ..+.|-+
T Consensus       469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~-~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~I  547 (767)
T KOG1514         469 ASPREIYEKIWEALSGERVTWDAALEALN-FRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAI  547 (767)
T ss_pred             CCHHHHHHHHHHHCCCCCCCHHHHHHHHH-HHHCCCCCCCCCEEEEECCHHHHHCCCHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf             58899999999975557430778899998-65416787878779996357877352098897774077678986699995


Q ss_pred             ECC---CCCCCH-HHHHHH--HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHC---CCCCCCHHHHCCCCCCC
Q ss_conf             067---543303-567543--332102454001356787643101345625664456531---67642001100011100
Q 537021.9.peg.4  143 TTE---IRKIPI-TVLSRC--QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARA---SDGSARDGLSLLDQAIA  213 (369)
Q Consensus       143 t~~---~~~ll~-TI~SRc--q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~---s~GslR~Al~lLeq~i~  213 (369)
                      ++.   |++++. -|-||-  +++.|.|.+.+++.+.+..-+..- -.++.++.+++|+.   --||.|+|+.+.+++.-
T Consensus       548 aNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~E  626 (767)
T KOG1514         548 ANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAAE  626 (767)
T ss_pred             CCCCCCHHHHHCCCHHHHCCCEEEECCCCCHHHHHHHHHHHCCCH-HHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             165647798854311233065055137788999999999860315-4314248999998877504227888899899999


Q ss_pred             HHH
Q ss_conf             000
Q 537021.9.peg.4  214 RCN  216 (369)
Q Consensus       214 ~~~  216 (369)
                      .++
T Consensus       627 ia~  629 (767)
T KOG1514         627 IAE  629 (767)
T ss_pred             HHH
T ss_conf             754


No 156
>KOG0731 consensus
Probab=98.34  E-value=1.6e-05  Score=60.92  Aligned_cols=126  Identities=23%  Similarity=0.348  Sum_probs=75.3

Q ss_pred             CCCHHHHHHHHHHHHH-----------CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             9284899999999998-----------28767062010787988889999999996146877788665878999779999
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFK-----------SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAI   69 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~-----------~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i   69 (369)
                      |.|.+.+++.|...|.           --++|+.-|++||||||||.+|++.|..    +   ..|....+|        
T Consensus       313 VAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGE----A---gVPF~svSG--------  377 (774)
T KOG0731         313 VAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGE----A---GVPFFSVSG--------  377 (774)
T ss_pred             CCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCC----C---CCCEEEECH--------
T ss_conf             2670899999999999843989998747767675178789998678999988530----5---896464133--------


Q ss_pred             HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HHHCCCCCEEEEECHHHCC---------------CCHHHHHHHHHHH-
Q ss_conf             7798778222453322334555665554456-5420465237751156648---------------0016789999972-
Q 537021.9.peg.4   70 IRGNHVDVVELDAASHTSIDDVREIIDQIYY-KPISARFRVYIMDEVQMLS---------------TAAFNGLLKTLEE-  132 (369)
Q Consensus        70 ~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~-~p~~~~~kv~iid~a~~m~---------------~~a~NaLLK~lEE-  132 (369)
                           .+++|+-.  .-+-.-||+|-..+.- .|     -|+.|||.|...               .+..|.||--|.- 
T Consensus       378 -----SEFvE~~~--g~~asrvr~lf~~ar~~aP-----~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf  445 (774)
T KOG0731         378 -----SEFVEMFV--GVGASRVRDLFPLARKNAP-----SIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGF  445 (774)
T ss_pred             -----HHHHHHHC--CCCHHHHHHHHHHHHCCCC-----EEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             -----78888760--3434888999987432698-----07971454200312556666788807888999887875277


Q ss_pred             -CCCCCCEEEEECCCCCCCHHH
Q ss_conf             -122111466506754330356
Q 537021.9.peg.4  133 -PPPHVKFIFATTEIRKIPITV  153 (369)
Q Consensus       133 -Pp~~~~fil~t~~~~~ll~TI  153 (369)
                       ...+|+|+=.|+.|+-+=+..
T Consensus       446 ~~~~~vi~~a~tnr~d~ld~al  467 (774)
T KOG0731         446 ETSKGVIVLAATNRPDILDPAL  467 (774)
T ss_pred             CCCCCEEEEECCCCCCCCCHHH
T ss_conf             6778479981168866428876


No 157
>KOG0740 consensus
Probab=98.30  E-value=8.2e-06  Score=63.01  Aligned_cols=166  Identities=22%  Similarity=0.254  Sum_probs=97.5

Q ss_pred             CCHHHHHHHHHHHHH-----------CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             284899999999998-----------287670620107879888899999999961468777886658789997799997
Q 537021.9.peg.4    2 IGQKPMIKTLTNAFK-----------SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAII   70 (369)
Q Consensus         2 iGq~~~~~~l~~~~~-----------~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~   70 (369)
                      -|.+.+.+.|..++.           -...+-++|+.||||+||+.++++.|....-  ..                   
T Consensus       156 ~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~a--tf-------------------  214 (428)
T KOG0740         156 AGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGA--TF-------------------  214 (428)
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHEECCCCCCHHHHHHHHHHHHCC--EE-------------------
T ss_conf             405668998654232204553765235445311120058988447999999862066--57-------------------


Q ss_pred             CCCCCCCCCCCCCCCCC--HH----HHHHHHHHHHHHHHCCCCCEEEEECHHHC-CCCHHH----------HHHHHH---
Q ss_conf             79877822245332233--45----55665554456542046523775115664-800167----------899999---
Q 537021.9.peg.4   71 RGNHVDVVELDAASHTS--ID----DVREIIDQIYYKPISARFRVYIMDEVQML-STAAFN----------GLLKTL---  130 (369)
Q Consensus        71 ~~~~~d~~e~~~~s~~~--id----~ir~l~~~~~~~p~~~~~kv~iid~a~~m-~~~a~N----------aLLK~l---  130 (369)
                             .-+.|+|=++  +.    -||.+..-++    ...+-|++|||+|.+ ++..=|          -+|=..   
T Consensus       215 -------f~iSassLtsK~~Ge~eK~vralf~vAr----~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~  283 (428)
T KOG0740         215 -------FNISASSLTSKYVGESEKLVRALFKVAR----SLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGK  283 (428)
T ss_pred             -------EECCHHHHHHHCCCHHHHHHHHHHHHHH----HCCCEEEEECHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             -------6306888653246707789999999987----13970898402567886368754544555655777654044


Q ss_pred             -HHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHCCCCCCHHHHHHHHHCCCC
Q ss_conf             -72122111466506754330356754333210245400135-6787643101345625664456531676
Q 537021.9.peg.4  131 -EEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLI-ELFTKILQEESIEFDPEAVAMIARASDG  199 (369)
Q Consensus       131 -EEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~-~~L~~i~~~E~i~~d~~~l~~ia~~s~G  199 (369)
                       --|.+++++|-+|+.|..+=+.++=|-+.+-+-|+|..+-. ..+.+.+.+.+....+..+..+|+..+|
T Consensus       284 ~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Teg  354 (428)
T KOG0740         284 NSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEG  354 (428)
T ss_pred             CCCCCCEEEEEECCCCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
T ss_conf             57888707998158883677888888710315535988789999999999768787417789999988617


No 158
>pfam05673 DUF815 Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.
Probab=98.29  E-value=1.7e-05  Score=60.59  Aligned_cols=122  Identities=23%  Similarity=0.415  Sum_probs=71.8

Q ss_pred             CCCHHHHHHHH---HHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf             92848999999---999982876706201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4    1 MIGQKPMIKTL---TNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV   77 (369)
Q Consensus         1 iiGq~~~~~~l---~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~   77 (369)
                      ++|-+.-++.|   ......|.-+|-.|++|.+|+||+|+.+++-....                         ....-+
T Consensus        30 L~Gie~Qk~~l~~NT~~F~~G~pAnnvLLwG~RGtGKSSlVKall~~~~-------------------------~~gLrl   84 (248)
T pfam05673        30 LVGIDRQKEALLRNTEQFLAGLPANNVLLWGARGTGKSSLVKALLNEYA-------------------------DQGLRL   84 (248)
T ss_pred             HCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHH-------------------------HCCCEE
T ss_conf             3493999999999999998089861367676898988899999999863-------------------------149569


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-EEEEECHHHCCCCHHHHHHHH-----HHHCCCCCCEEEEECCCCCCCH
Q ss_conf             2245332233455566555445654204652-377511566480016789999-----9721221114665067543303
Q 537021.9.peg.4   78 VELDAASHTSIDDVREIIDQIYYKPISARFR-VYIMDEVQMLSTAAFNGLLKT-----LEEPPPHVKFIFATTEIRKIPI  151 (369)
Q Consensus        78 ~e~~~~s~~~id~ir~l~~~~~~~p~~~~~k-v~iid~a~~m~~~a~NaLLK~-----lEEPp~~~~fil~t~~~~~ll~  151 (369)
                      +|++.   ..+.++-+|++.++-.|    +| |+.+|+---=..++.-..||+     +|.+|+|++|.-+++--+-+++
T Consensus        85 IEv~k---~~L~~Lp~i~~~l~~~~----~kFIiF~DDLSFe~~d~~yk~LKs~LeG~l~~~p~NvliYaTSNRRHLi~e  157 (248)
T pfam05673        85 IEVDK---DDLGDLPDIVDLLRGRP----YRFILFCDDLSFEEGESSYKALKSVLEGGLEARPDNVLIYATSNRRHLIPE  157 (248)
T ss_pred             EEECH---HHHCCHHHHHHHHHCCC----CCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCHHCCCH
T ss_conf             99878---88721999999996499----757999635576789736999999965764468873899984270003633


Q ss_pred             HHH
Q ss_conf             567
Q 537021.9.peg.4  152 TVL  154 (369)
Q Consensus       152 TI~  154 (369)
                      +-.
T Consensus       158 ~~~  160 (248)
T pfam05673       158 YMS  160 (248)
T ss_pred             HHC
T ss_conf             323


No 159
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.29  E-value=2.8e-06  Score=66.47  Aligned_cols=205  Identities=20%  Similarity=0.257  Sum_probs=112.8

Q ss_pred             CCCHHHHHHHHHHHHHCC-CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCHHHHHHHC--CCCCC
Q ss_conf             928489999999999828-7670620107879888899999999961468777886658-7899977999977--98778
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSG-RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVE-FEGFGEHCQAIIR--GNHVD   76 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~-~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~-~c~~c~~c~~i~~--~~~~d   76 (369)
                      +||+....+.+.+.+..= +-.-..|++|+.|+||..+||++-.    .+.....|.+. -|+.-+. ..+..  ..|  
T Consensus       141 liG~S~am~~v~~~i~~~A~s~~pVLI~GE~GTGK~~~Ar~IH~----~S~r~~~pfv~vnC~~l~~-~l~eseLFG~--  213 (441)
T PRK10365        141 MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHA----SSARSEKPLVTLNCAALNE-SLLESELFGH--  213 (441)
T ss_pred             CEECCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHH----CCCCCCCCCEEEECCCCCH-HHHHHHHCCC--
T ss_conf             66689999999999999848899489989998109999999996----5787789807987898984-5558986177--


Q ss_pred             CCCCCCCCCCCHHHHHH-HHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC-----------CCCCCEEEEEC
Q ss_conf             22245332233455566-5554456542046523775115664800167899999721-----------22111466506
Q 537021.9.peg.4   77 VVELDAASHTSIDDVRE-IIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP-----------PPHVKFIFATT  144 (369)
Q Consensus        77 ~~e~~~~s~~~id~ir~-l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP-----------p~~~~fil~t~  144 (369)
                        +- + .-+|.+.-+. +.       ..+..-.+++||.+.|+...|..||+.||+-           +.++.+|.+|+
T Consensus       214 --~~-g-aftga~~~~~g~~-------~~A~gGTLfLdeI~~l~~~~Q~kLl~~l~~~~~~~~g~~~~~~~d~RiIaat~  282 (441)
T PRK10365        214 --EK-G-AFTGADKRREGRF-------VEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATH  282 (441)
T ss_pred             --CC-C-CCCCCCCCCCCCE-------EECCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEECCC
T ss_conf             --55-6-8789653468987-------78899825502315299999999998777521000588734413637998378


Q ss_pred             CC-CCC------CHHHHHHH--HHHHCCCCCC--HHHHH----HHHHHHHHCCC---CCCHHHHHHH-HHCCCCCCCHHH
Q ss_conf             75-433------03567543--3321024540--01356----78764310134---5625664456-531676420011
Q 537021.9.peg.4  145 EI-RKI------PITVLSRC--QRFDLHRISI--GDLIE----LFTKILQEESI---EFDPEAVAMI-ARASDGSARDGL  205 (369)
Q Consensus       145 ~~-~~l------l~TI~SRc--q~~~f~~l~~--~~i~~----~L~~i~~~E~i---~~d~~~l~~i-a~~s~GslR~Al  205 (369)
                      .. ...      -+-.--|-  ..+.++|+..  ++|..    +|.+.+.+.+.   .+++++++.+ .+-.-||+|.--
T Consensus       283 ~~l~~~v~~g~Fr~dLy~rL~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvREL~  362 (441)
T PRK10365        283 RDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE  362 (441)
T ss_pred             CCHHHHHHCCCCHHHHHHHHCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHH
T ss_conf             89999988198258999886011137826000620099999999999999849998888999999997099998999999


Q ss_pred             HCCCCCCCHHHCC-CCHHH
Q ss_conf             0001110000001-21032
Q 537021.9.peg.4  206 SLLDQAIARCNDK-IVTSS  223 (369)
Q Consensus       206 ~lLeq~i~~~~~~-i~~e~  223 (369)
                      +.+++++..+.+. |+.++
T Consensus       363 n~iera~~~~~~~~i~~~~  381 (441)
T PRK10365        363 NAVERAVVLLTGEYISERE  381 (441)
T ss_pred             HHHHHHHHHCCCCCCCHHH
T ss_conf             9999999957898688465


No 160
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.27  E-value=1.3e-05  Score=61.56  Aligned_cols=203  Identities=17%  Similarity=0.236  Sum_probs=103.6

Q ss_pred             CCCHHHHHHHH-HHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHHC---CCCC
Q ss_conf             92848999999-9999828767062010787988889999999996146877788665-87899977999977---9877
Q 537021.9.peg.4    1 MIGQKPMIKTL-TNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV-EFEGFGEHCQAIIR---GNHV   75 (369)
Q Consensus         1 iiGq~~~~~~l-~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~-~~c~~c~~c~~i~~---~~~~   75 (369)
                      ++|+....... ..+-+--+-.-..|+.|..|+||+++|+++-..    +.....|.+ --|+.-+. ..+..   |.. 
T Consensus       327 l~g~s~~~~~~~~~a~~~a~~~~pVLI~GE~GtGKe~lAraIH~~----S~r~~~pfv~vnC~ai~~-~~~e~elfG~~-  400 (639)
T PRK11388        327 MPQDSPQMRRLIHFGRQAAKSSFPILLCGEEGVGKALLAQAIHNE----SERAAGPYIAVNCQLLPD-EALAEEFLGSD-  400 (639)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHC----CCCCCCCEEEEECCCCCH-HHHHHHHCCCC-
T ss_conf             467999999999999999688996898898981099999999955----777899818987898984-67899873877-


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC-----------CCCCCEEEEEC
Q ss_conf             8222453322334555665554456542046523775115664800167899999721-----------22111466506
Q 537021.9.peg.4   76 DVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP-----------PPHVKFIFATT  144 (369)
Q Consensus        76 d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP-----------p~~~~fil~t~  144 (369)
                           .++...+      ....+    ..+.--.+++||++.|..+.|..||+.|||-           |-++.+|-+|+
T Consensus       401 -----~~~~~~g------~~g~~----e~A~gGTL~LdeI~~lp~~~Q~~LlrvL~~~~~~r~g~~~~~~vdvRiiaat~  465 (639)
T PRK11388        401 -----RTDSENG------RLSKF----ELAHGGTLFLEKVEYLSVELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTT  465 (639)
T ss_pred             -----CCCCCCC------CCCHH----HCCCCCEEEECCHHHCCHHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEEECC
T ss_conf             -----6764346------68624----40369828846726499999999999986593785699946664279997364


Q ss_pred             CC-CCC------CHHHHHHH--HHHHCCCCCC--HHHHHH----HHHHHHHC--CCCCCHHHHHHHH-HCCCCCCCHHHH
Q ss_conf             75-433------03567543--3321024540--013567----87643101--3456256644565-316764200110
Q 537021.9.peg.4  145 EI-RKI------PITVLSRC--QRFDLHRISI--GDLIEL----FTKILQEE--SIEFDPEAVAMIA-RASDGSARDGLS  206 (369)
Q Consensus       145 ~~-~~l------l~TI~SRc--q~~~f~~l~~--~~i~~~----L~~i~~~E--~i~~d~~~l~~ia-~~s~GslR~Al~  206 (369)
                      .. ..+      -+-.--|-  ..+.++|+..  ++|...    |..+....  .+.++++++..+. +-.-||+|.--+
T Consensus       466 ~~l~~~v~~g~fr~dLyyrl~~~~i~lPpLReR~~Di~~L~~~~l~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n  545 (639)
T PRK11388        466 ADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRS  545 (639)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHH
T ss_conf             50899987498549999876744105733232534399999999999999719999989999999972899979999999


Q ss_pred             CCCCCCCHHHCC-CCHHHH
Q ss_conf             001110000001-210322
Q 537021.9.peg.4  207 LLDQAIARCNDK-IVTSSV  224 (369)
Q Consensus       207 lLeq~i~~~~~~-i~~e~v  224 (369)
                      .+++++..+++. |+.++.
T Consensus       546 vl~~a~~~~~~~~I~~~~L  564 (639)
T PRK11388        546 VIENLALSSDNGRIRLSDL  564 (639)
T ss_pred             HHHHHHHHCCCCCCCHHHC
T ss_conf             9999998389984267978


No 161
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.25  E-value=6e-05  Score=56.64  Aligned_cols=156  Identities=14%  Similarity=0.270  Sum_probs=104.5

Q ss_pred             EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC----------CCCCHHHH
Q ss_conf             06201078798888999999999614687778866587899977999977987782224533----------22334555
Q 537021.9.peg.4   22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA----------SHTSIDDV   91 (369)
Q Consensus        22 ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~----------s~~~id~i   91 (369)
                      ..+.++|+.|.|||-+-.+.+..+. +.                        ...++++.+.          .+..+++.
T Consensus       142 NPLfIyG~~GlGKTHLL~AIgn~i~-~~------------------------~~kV~Yvtae~F~~~~v~ai~~~~~~~F  196 (455)
T PRK12422        142 NPIYLFGPEGSGKTHLMQAAVSALR-ES------------------------GGKILYVSSELFTEHLVSAIRSGEMQRF  196 (455)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHH-CC------------------------CCEEEEECHHHHHHHHHHHHHCCCHHHH
T ss_conf             8758878999978999999999853-79------------------------9869997499999999999975889999


Q ss_pred             HHHHHHHHHHHHCCCCCEEEEECHHHCC--CCHHHHHHHHHHHC-CCCCCEEEEECCCC----CCCHHHHHHHH---HHH
Q ss_conf             6655544565420465237751156648--00167899999721-22111466506754----33035675433---321
Q 537021.9.peg.4   92 REIIDQIYYKPISARFRVYIMDEVQMLS--TAAFNGLLKTLEEP-PPHVKFIFATTEIR----KIPITVLSRCQ---RFD  161 (369)
Q Consensus        92 r~l~~~~~~~p~~~~~kv~iid~a~~m~--~~a~NaLLK~lEEP-p~~~~fil~t~~~~----~ll~TI~SRcq---~~~  161 (369)
                      |+-     |+    ..-|.+|||.+.+.  ...|.-|.-|+..- -.+-.+||++..+-    .+-+-++||..   .+.
T Consensus       197 r~~-----yr----~~DvLLIDDIQfl~gK~~tqeEff~tfN~L~~~~KQIVitsDr~P~el~~l~~RL~SRf~~GL~v~  267 (455)
T PRK12422        197 RSF-----YR----NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSSYAPGDLKAMEERLISRFEWGIAIP  267 (455)
T ss_pred             HHH-----HH----CCCEEEEEHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCEEEC
T ss_conf             999-----96----388776314788728488999999999999985996999689895765126899998863761321


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCC
Q ss_conf             02454001356787643101345625664456531676420011000111
Q 537021.9.peg.4  162 LHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQA  211 (369)
Q Consensus       162 f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~  211 (369)
                      ..|++.+.....|.+-++..+++++++.++.||..-.+|+|.-...+.++
T Consensus       268 I~~Pd~etr~~Il~~k~~~~~~~l~~ev~~~iA~~i~~niReLeGal~~l  317 (455)
T PRK12422        268 IHPLTREGLRSFLMRQAEQLSIRIEETALDFLIQALSSNVKTLLHALTLL  317 (455)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             68999899999999999871888844689999999755179999999999


No 162
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.25  E-value=7.2e-06  Score=63.41  Aligned_cols=194  Identities=21%  Similarity=0.255  Sum_probs=106.0

Q ss_pred             CCCHHHHHHHHHHHHH---CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHHC--CCC
Q ss_conf             9284899999999998---28767062010787988889999999996146877788665-87899977999977--987
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFK---SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV-EFEGFGEHCQAIIR--GNH   74 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~---~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~-~~c~~c~~c~~i~~--~~~   74 (369)
                      +|||..+.+.|++.+.   ....|  .|++|..|+||..+|+++=..    +...+.|-+ --|+.-+. ..+.+  ..|
T Consensus       188 lIG~S~~m~~l~~~i~~vA~sd~p--VLI~GEtGTGKelvAr~IH~~----S~R~~~Pfv~vNCaalpe-~l~EseLFGh  260 (510)
T PRK05022        188 MIGQSPAMQQLKKEIEVVAASDLN--VLITGETGVGKELVARAIHQA----SPRAVKPLVYLNCAALPE-SLAESELFGH  260 (510)
T ss_pred             EEECCHHHHHHHHHHHHHHCCCCC--EEEECCCCCCHHHHHHHHHHC----CCCCCCCCEEEECCCCCH-HHHHHHHCCC
T ss_conf             520899999999999999689998--898898981399999999966----887899857888999985-6789986597


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC-----------CCCCCEEEEE
Q ss_conf             78222453322334555665554456542046523775115664800167899999721-----------2211146650
Q 537021.9.peg.4   75 VDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP-----------PPHVKFIFAT  143 (369)
Q Consensus        75 ~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP-----------p~~~~fil~t  143 (369)
                           ..++- +|...-|.  ..+.    .++.-.+++||.+.|+.+.|-.||++||+-           +-++.+|-+|
T Consensus       261 -----~kGaF-tGA~~~r~--G~fe----~A~gGTLfLDEI~~Lpl~~Q~KLLrvLq~g~iqrvG~~~~~~vdvRIIAAT  328 (510)
T PRK05022        261 -----VKGAF-TGAISNRS--GKFE----LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAAT  328 (510)
T ss_pred             -----CCCCC-CCCCCCCC--CCEE----ECCCCEEEEECHHHCCHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEEEC
T ss_conf             -----77886-88655678--8101----778987987574549999999999998479588558994666668999607


Q ss_pred             CCCCCCCHHHHH---------H--HHHHHCCCCCC--HHHHH----HHHHHHHHCC---CCCCHHHHHHHHH-CCCCCCC
Q ss_conf             675433035675---------4--33321024540--01356----7876431013---4562566445653-1676420
Q 537021.9.peg.4  144 TEIRKIPITVLS---------R--CQRFDLHRISI--GDLIE----LFTKILQEES---IEFDPEAVAMIAR-ASDGSAR  202 (369)
Q Consensus       144 ~~~~~ll~TI~S---------R--cq~~~f~~l~~--~~i~~----~L~~i~~~E~---i~~d~~~l~~ia~-~s~GslR  202 (369)
                      +.  .+-.-+..         |  +..+.++|+..  ++|..    +|.+...+.|   ..++++++..+.. -.-||+|
T Consensus       329 nr--dL~~~V~~G~FR~DLYyRLsv~~I~vPPLRER~eDI~lLa~~FLe~~~~~~g~~~~~ls~eAl~~L~~Y~WPGNVR  406 (510)
T PRK05022        329 NR--DLREEVLAGRFRADLYHRLSVFPLPVPPLRERGDDVLLLAGYFLEQNRLRLGLSSLRLSPDAQAALLQYDWPGNVR  406 (510)
T ss_pred             CC--CHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHH
T ss_conf             83--5999988396389999876204034808655554099999999999999829898988899999997099997899


Q ss_pred             HHHHCCCCCCCHH
Q ss_conf             0110001110000
Q 537021.9.peg.4  203 DGLSLLDQAIARC  215 (369)
Q Consensus       203 ~Al~lLeq~i~~~  215 (369)
                      .--+.++++...+
T Consensus       407 ELenvIeRA~lla  419 (510)
T PRK05022        407 ELEHVISRAALLA  419 (510)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999971


No 163
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.22  E-value=7.5e-06  Score=63.28  Aligned_cols=170  Identities=20%  Similarity=0.307  Sum_probs=96.9

Q ss_pred             CHHHHHHHHHHHHHC-----------C-CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             848999999999982-----------8-7670620107879888899999999961468777886658789997799997
Q 537021.9.peg.4    3 GQKPMIKTLTNAFKS-----------G-RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAII   70 (369)
Q Consensus         3 Gq~~~~~~l~~~~~~-----------~-~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~   70 (369)
                      |=+.-++.++.+|+-           | .-|...|++||||+|||.+|++.|..-+|.--...+.        .--+++ 
T Consensus       155 GL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgS--------ElVqKY-  225 (406)
T COG1222         155 GLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGS--------ELVQKY-  225 (406)
T ss_pred             CHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCH--------HHHHHH-
T ss_conf             88999999999840336688899974999997127668999758899999872058669994219--------999998-


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC-----------CCHHHHHHHHHHH-----CC
Q ss_conf             7987782224533223345556655544565420465237751156648-----------0016789999972-----12
Q 537021.9.peg.4   71 RGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS-----------TAAFNGLLKTLEE-----PP  134 (369)
Q Consensus        71 ~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~-----------~~a~NaLLK~lEE-----Pp  134 (369)
                               | |   -|--=||++-+-+.-+    ..-|++|||.|..-           .+-|-.+|-.|-|     |-
T Consensus       226 ---------i-G---EGaRlVRelF~lArek----aPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~  288 (406)
T COG1222         226 ---------I-G---EGARLVRELFELAREK----APSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR  288 (406)
T ss_pred             ---------H-C---CCHHHHHHHHHHHHHC----CCEEEEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf             ---------3-4---1169999999987414----984999831122311113688885099999999999860588978


Q ss_pred             CCCCEEEEECCCCCCCHHHHH--HH-HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHCCCCC
Q ss_conf             211146650675433035675--43-3321024540013567876431013456256-644565316764
Q 537021.9.peg.4  135 PHVKFIFATTEIRKIPITVLS--RC-QRFDLHRISIGDLIELFTKILQEESIEFDPE-AVAMIARASDGS  200 (369)
Q Consensus       135 ~~~~fil~t~~~~~ll~TI~S--Rc-q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~-~l~~ia~~s~Gs  200 (369)
                      .++..|.+|+-++-|=|.+.=  |- ..+.|+.++.+.=...|+ |-. -+++.+++ .++.+|+..+|.
T Consensus       289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~-IHt-rkM~l~~dvd~e~la~~~~g~  356 (406)
T COG1222         289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILK-IHT-RKMNLADDVDLELLARLTEGF  356 (406)
T ss_pred             CCEEEEEECCCCCCCCHHHCCCCCCCCEEECCCCCHHHHHHHHH-HHH-HHCCCCCCCCHHHHHHHCCCC
T ss_conf             87689985588555576650887545301168989789999999-876-214676676999998753899


No 164
>KOG2170 consensus
Probab=98.19  E-value=1.8e-05  Score=60.46  Aligned_cols=132  Identities=23%  Similarity=0.273  Sum_probs=85.1

Q ss_pred             CCCHHHHHHHHHHHHH----CC--CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH-H-HCC
Q ss_conf             9284899999999998----28--76706201078798888999999999614687778866587899977999-9-779
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFK----SG--RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQA-I-IRG   72 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~----~~--~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~-i-~~~   72 (369)
                      +.||.-+++..-++++    +.  +-|-.+=|+|++|+||.-.|+++|..+.-.            |.-..|.. + ...
T Consensus        84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~------------Gl~S~~V~~fvat~  151 (344)
T KOG2170          84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRG------------GLRSPFVHHFVATL  151 (344)
T ss_pred             HHCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC------------CCCCHHHHHHHHHC
T ss_conf             632087999999999998628999987589830899875648999999998751------------12562688765541


Q ss_pred             CCCCCCCCCCCCCCCHHHHH-HHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCC-------CCCEEEEEC
Q ss_conf             87782224533223345556-6555445654204652377511566480016789999972122-------111466506
Q 537021.9.peg.4   73 NHVDVVELDAASHTSIDDVR-EIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPP-------HVKFIFATT  144 (369)
Q Consensus        73 ~~~d~~e~~~~s~~~id~ir-~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~-------~~~fil~t~  144 (369)
                      .+|+--        .|++-| +|..++.-.-....+-++|+||+|+|...=-.+|--+|+-+|.       +++|||.++
T Consensus       152 hFP~~~--------~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN  223 (344)
T KOG2170         152 HFPHAS--------KIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSN  223 (344)
T ss_pred             CCCCHH--------HHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECC
T ss_conf             599767--------899999999999999998557754873105435876999876663046321355455148999717


Q ss_pred             CCCCCCHH
Q ss_conf             75433035
Q 537021.9.peg.4  145 EIRKIPIT  152 (369)
Q Consensus       145 ~~~~ll~T  152 (369)
                      --...++-
T Consensus       224 ~gg~eI~~  231 (344)
T KOG2170         224 AGGSEIAR  231 (344)
T ss_pred             CCCHHHHH
T ss_conf             86147799


No 165
>KOG0736 consensus
Probab=98.17  E-value=4.1e-05  Score=57.87  Aligned_cols=169  Identities=20%  Similarity=0.343  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHCC--------CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf             489999999999828--------767062010787988889999999996146877788665878999779999779877
Q 537021.9.peg.4    4 QKPMIKTLTNAFKSG--------RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHV   75 (369)
Q Consensus         4 q~~~~~~l~~~~~~~--------~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~   75 (369)
                      ++..+..+.+.+.-.        ++.-+.|++|++|+||+++.+++|+.|--+-  ...          +|..+...+  
T Consensus       406 ~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~--~ev----------dc~el~~~s--  471 (953)
T KOG0736         406 LEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHL--LEV----------DCYELVAES--  471 (953)
T ss_pred             CHHHHHHHHHHHCCCCCCCHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCE--EEC----------CHHHHHHCC--
T ss_conf             027999999984865585300133553799867999875799999999838725--701----------389886436--


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHH----HHHHHHH------H---CCCCCCEEEE
Q ss_conf             8222453322334555665554456542046523775115664800167----8999997------2---1221114665
Q 537021.9.peg.4   76 DVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFN----GLLKTLE------E---PPPHVKFIFA  142 (369)
Q Consensus        76 d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~N----aLLK~lE------E---Pp~~~~fil~  142 (369)
                             +++   .+.. +....+ +.-....-|+.+...|-+..++.+    -++|.++      -   +-++++|+-+
T Consensus       472 -------~~~---~etk-l~~~f~-~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t  539 (953)
T KOG0736         472 -------ASH---TETK-LQAIFS-RARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVAT  539 (953)
T ss_pred             -------CCH---HHHH-HHHHHH-HHHHCCCEEEEEECCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
T ss_conf             -------331---3789-999999-8752686289872242455337774427799999999720235677996599996


Q ss_pred             ECCCCCCCHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
Q ss_conf             067543303567543-332102454001356787643101345625664456531676
Q 537021.9.peg.4  143 TTEIRKIPITVLSRC-QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDG  199 (369)
Q Consensus       143 t~~~~~ll~TI~SRc-q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~G  199 (369)
                      |++.+.++++|+|-. ..+.+..++.++=.++|++....+.+.- +..++.+|+...|
T Consensus       540 ~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~-~v~~k~~a~~t~g  596 (953)
T KOG0736         540 TSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQ-DVNLKQLARKTSG  596 (953)
T ss_pred             CCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHCCC
T ss_conf             25302398789875265213778887889999999983065235-7787899986589


No 166
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.17  E-value=1e-05  Score=62.32  Aligned_cols=130  Identities=22%  Similarity=0.317  Sum_probs=82.1

Q ss_pred             CCCHHHHHHHHHHHHH-----------CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             9284899999999998-----------28767062010787988889999999996146877788665878999779999
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFK-----------SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAI   69 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~-----------~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i   69 (369)
                      |.|.+.+++.|...|.           -+++|.-.|+.||||+|||.+|++.|-.-       +.|.             
T Consensus       152 VAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-------~VPF-------------  211 (596)
T COG0465         152 VAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-------GVPF-------------  211 (596)
T ss_pred             HCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHCCC-------CCCC-------------
T ss_conf             41867999999999998638556675235345652685599987278999984546-------8983-------------


Q ss_pred             HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HHCCCCCEEEEECHHHCC--------------CCHHHHHHHHHHHCC
Q ss_conf             77987782224533223345556655544565-420465237751156648--------------001678999997212
Q 537021.9.peg.4   70 IRGNHVDVVELDAASHTSIDDVREIIDQIYYK-PISARFRVYIMDEVQMLS--------------TAAFNGLLKTLEEPP  134 (369)
Q Consensus        70 ~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~-p~~~~~kv~iid~a~~m~--------------~~a~NaLLK~lEEPp  134 (369)
                      ..-+-.|++|+--  --|...+|++-+.+... |     =|++|||.|...              .|.-|-||-.|+-..
T Consensus       212 f~iSGS~FVemfV--GvGAsRVRdLF~qAkk~aP-----~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~  284 (596)
T COG0465         212 FSISGSDFVEMFV--GVGASRVRDLFEQAKKNAP-----CIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG  284 (596)
T ss_pred             EECCCHHHHHHHC--CCCCHHHHHHHHHHHCCCC-----CEEEEEHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             5303444644314--7883888999998551599-----66987634331454577889980699999988885201578


Q ss_pred             CCC-CEEEEECC-CCCCCHHHHHHHH
Q ss_conf             211-14665067-5433035675433
Q 537021.9.peg.4  135 PHV-KFIFATTE-IRKIPITVLSRCQ  158 (369)
Q Consensus       135 ~~~-~fil~t~~-~~~ll~TI~SRcq  158 (369)
                      .+. +.++++|| |+-+-|+ ..|=-
T Consensus       285 ~~~gviviaaTNRpdVlD~A-LlRpg  309 (596)
T COG0465         285 GNEGVIVIAATNRPDVLDPA-LLRPG  309 (596)
T ss_pred             CCCCEEEECCCCCCCCCHHH-HCCCC
T ss_conf             88754885267874333176-52887


No 167
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.15  E-value=0.00048  Score=50.00  Aligned_cols=182  Identities=12%  Similarity=0.153  Sum_probs=95.6

Q ss_pred             HHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH------HHHHHC---CCCCCCCCC
Q ss_conf             99999982876706201078798888999999999614687778866587899977------999977---987782224
Q 537021.9.peg.4   10 TLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEH------CQAIIR---GNHVDVVEL   80 (369)
Q Consensus        10 ~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~------c~~i~~---~~~~d~~e~   80 (369)
                      .|.+.+....-....++++|.|.||||++.-+++.-.  ...+-  ..+.....+.      |..+..   +.-++...+
T Consensus        21 rL~~~L~~~~~~~l~lv~APaG~GKTtl~a~w~~~~~--~~~Wl--sld~~d~~~~~f~~~l~~al~~~~~~~~~~~~~~   96 (903)
T PRK04841         21 RLLAKLSGANNYRLVLVRSPAGYGKTTLASQWAAGKN--NVGWY--SLDESDNQPERFASYLIAALQQATNGHCSKSEAL   96 (903)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCC--CEEEE--ECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHC
T ss_conf             7999998515899799977999889999999983499--85998--5885448999999999999998565433112311


Q ss_pred             -CCCCCCCHHHH-HHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHH-HHHHCCCCCCEEEEECC-CCCCCHHHHHH
Q ss_conf             -53322334555-6655544565420465237751156648001678999-99721221114665067-54330356754
Q 537021.9.peg.4   81 -DAASHTSIDDV-REIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLK-TLEEPPPHVKFIFATTE-IRKIPITVLSR  156 (369)
Q Consensus        81 -~~~s~~~id~i-r~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK-~lEEPp~~~~fil~t~~-~~~ll~TI~SR  156 (369)
                       ++.+..+++.+ .+++..+.   ..++.-+++||+.|.++......+|. .++..|+++.+|+++.+ |.--+...+.+
T Consensus        97 ~~~~~~~~~~~~~~~l~~~l~---~~~~~~~lvlDD~h~i~~~~~~~~l~~Ll~~~p~~l~lvl~sR~~p~l~l~~l~~~  173 (903)
T PRK04841         97 AEKRQYASLTSLFAQLFIELS---DWHQPLYLVLDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVR  173 (903)
T ss_pred             CCCCCCCCHHHHHHHHHHHHH---CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHC
T ss_conf             355665549999999999975---58998699986836488868999999999838988389987689998752457745


Q ss_pred             HHHHHCC----CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCC
Q ss_conf             3332102----45400135678764310134562566445653167642
Q 537021.9.peg.4  157 CQRFDLH----RISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSA  201 (369)
Q Consensus       157 cq~~~f~----~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~Gsl  201 (369)
                      -+.+.+.    +.+.+|+..++..   .-|..++++.++.+.+.++|=+
T Consensus       174 ~~l~~i~~~dL~Ft~~E~~~~~~~---~~g~~l~~~~~~~l~~~TeGW~  219 (903)
T PRK04841        174 DQLLEIGSQQLAFDHQEAQQFFDQ---RLSSPIEAAESSRLCDRVEGWP  219 (903)
T ss_pred             CEEEEECHHHCCCCHHHHHHHHHH---CCCCCCCHHHHHHHHHHHCCHH
T ss_conf             956998688759999999999986---2599999999999999708789


No 168
>KOG0744 consensus
Probab=98.15  E-value=3.6e-06  Score=65.68  Aligned_cols=128  Identities=21%  Similarity=0.388  Sum_probs=76.7

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC-------CC------CHH
Q ss_conf             62010787988889999999996146877788665878999779999779877822245332-------23------345
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAAS-------HT------SID   89 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s-------~~------~id   89 (369)
                      -.|++||||+|||++-+++|+.|--.....+.                   +--++||+..|       ..      -.+
T Consensus       179 liLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~-------------------~~~liEinshsLFSKWFsESgKlV~kmF~  239 (423)
T KOG0744         179 LILLHGPPGTGKTSLCKALAQKLSIRTNDRYY-------------------KGQLIEINSHSLFSKWFSESGKLVAKMFQ  239 (423)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHEEEECCCCC-------------------CCEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89985799988227999998751465237644-------------------40699970467889887121138999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECHHHCC---------------CCHHHHHHHHHHHCCCC-CCEEEEECCC-CCCCHH
Q ss_conf             556655544565420465237751156648---------------00167899999721221-1146650675-433035
Q 537021.9.peg.4   90 DVREIIDQIYYKPISARFRVYIMDEVQMLS---------------TAAFNGLLKTLEEPPPH-VKFIFATTEI-RKIPIT  152 (369)
Q Consensus        90 ~ir~l~~~~~~~p~~~~~kv~iid~a~~m~---------------~~a~NaLLK~lEEPp~~-~~fil~t~~~-~~ll~T  152 (369)
                      +|.++.+.      +|..--++|||++.+.               ...-||||--|..--.+ -+.||+|.|. +.|=..
T Consensus       240 kI~ELv~d------~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~A  313 (423)
T KOG0744         240 KIQELVED------RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVA  313 (423)
T ss_pred             HHHHHHHC------CCCEEEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHH
T ss_conf             99999717------896899980787888999875413799821899999999989986047977999626267777888


Q ss_pred             HHHHHH-HHHCCCCCCHHHHHHHH
Q ss_conf             675433-32102454001356787
Q 537021.9.peg.4  153 VLSRCQ-RFDLHRISIGDLIELFT  175 (369)
Q Consensus       153 I~SRcq-~~~f~~l~~~~i~~~L~  175 (369)
                      -.-|.- +++..+++..-+...|+
T Consensus       314 fVDRADi~~yVG~Pt~~ai~~Ilk  337 (423)
T KOG0744         314 FVDRADIVFYVGPPTAEAIYEILK  337 (423)
T ss_pred             HHHHHHHEEECCCCCHHHHHHHHH
T ss_conf             611754211038963999999999


No 169
>KOG0733 consensus
Probab=98.14  E-value=4.9e-05  Score=57.28  Aligned_cols=164  Identities=20%  Similarity=0.247  Sum_probs=92.3

Q ss_pred             CHHHHHHHHHHHHHCC------------CCCEEEHHCCCCCCCHHHHHHHHHHHH--CCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             8489999999999828------------767062010787988889999999996--14687778866587899977999
Q 537021.9.peg.4    3 GQKPMIKTLTNAFKSG------------RIAQSYMLSGTRGIGKTTTARIIARSL--NYKTAHIDVPTVEFEGFGEHCQA   68 (369)
Q Consensus         3 Gq~~~~~~l~~~~~~~------------~~~ha~lf~G~~G~GK~~~a~~~A~~l--~c~~~~~~~~~~~~c~~c~~c~~   68 (369)
                      |++++...|..+|..-            ..|...|++||||||||.+|++.|..-  |.-+-.                 
T Consensus       515 aL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVK-----------------  577 (802)
T KOG0733         515 ALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVK-----------------  577 (802)
T ss_pred             CHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEC-----------------
T ss_conf             499999999999860023888999828889872387579986188999998503047547623-----------------


Q ss_pred             HHCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCC-----------CHHHHHHHHHHHC--
Q ss_conf             9779877822--245332233455566555445654204652377511566480-----------0167899999721--
Q 537021.9.peg.4   69 IIRGNHVDVV--ELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLST-----------AAFNGLLKTLEEP--  133 (369)
Q Consensus        69 i~~~~~~d~~--e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~-----------~a~NaLLK~lEEP--  133 (369)
                           -|.++  ++ |.|.   --||.+-..++-    +-.=||++||.|.|..           ---|-||--|.--  
T Consensus       578 -----GPELlNkYV-GESE---rAVR~vFqRAR~----saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~  644 (802)
T KOG0733         578 -----GPELLNKYV-GESE---RAVRQVFQRARA----SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEE  644 (802)
T ss_pred             -----CHHHHHHHH-HHHH---HHHHHHHHHHHC----CCCEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             -----889998774-2378---999999998623----898389851112027655777750589999999987316211


Q ss_pred             CCCCCEEEEECCCCCCCHHHHH--HHH-HHHCCCCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHC
Q ss_conf             2211146650675433035675--433-3210245400135678764310134562566-4456531
Q 537021.9.peg.4  134 PPHVKFIFATTEIRKIPITVLS--RCQ-RFDLHRISIGDLIELFTKILQEESIEFDPEA-VAMIARA  196 (369)
Q Consensus       134 p~~~~fil~t~~~~~ll~TI~S--Rcq-~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~-l~~ia~~  196 (369)
                      -.+|+.|-+|+.|+.|=|.|.=  |-- .+....++.++=...|+.+.+..+..++++. ++-||+.
T Consensus       645 R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~  711 (802)
T KOG0733         645 RRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARN  711 (802)
T ss_pred             CCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHC
T ss_conf             1425999506897655565518775574245069987889999999853579988754589998512


No 170
>pfam00493 MCM MCM2/3/5 family.
Probab=98.09  E-value=2.1e-05  Score=59.96  Aligned_cols=141  Identities=18%  Similarity=0.183  Sum_probs=80.1

Q ss_pred             CCCHHHHHHHHHHHHHCCC------------CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             9284899999999998287------------6706201078798888999999999614687778866587899977999
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGR------------IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQA   68 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~------------~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~   68 (369)
                      |-|++.++..+--++-.|-            =.| .|+.|.||+||+.+.+..++..    +...+    .+|...+-  
T Consensus        26 i~G~~~vK~ai~l~l~gg~~~~~~~~~~~Rg~ih-iLLvGdPG~gKSqlLk~~~~~~----pr~~~----tsg~~ss~--   94 (327)
T pfam00493        26 IYGHEDVKKAILLQLFGGVKKNLPDGTRLRGDIN-VLLVGDPGTAKSQLLKYVAKLA----PRAVY----TSGKGSSA--   94 (327)
T ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE-EEEECCCCCCHHHHHHHHHHHC----CCCEE----ECCCCCCC--
T ss_conf             2498799999999980898765888862036511-8984699815609999999868----87088----31776656--


Q ss_pred             HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---HCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCC--------
Q ss_conf             9779877822245332233455566555445654---20465237751156648001678999997212211--------
Q 537021.9.peg.4   69 IIRGNHVDVVELDAASHTSIDDVREIIDQIYYKP---ISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHV--------  137 (369)
Q Consensus        69 i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p---~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~--------  137 (369)
                            ..   +.++-  .-|..  --++ .+.+   .-++.-|+.|||.++|+...+.||+-.||+=.-.+        
T Consensus        95 ------~G---LTa~~--~~d~~--~~~~-~leaGalvlAd~Gv~cIDEfdk~~~~d~saL~EAMEqqtVsIaKaGi~~t  160 (327)
T pfam00493        95 ------AG---LTAAV--VRDPD--TGEW-TLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGIVAT  160 (327)
T ss_pred             ------CC---CEEEE--EEECC--CCCE-EEECCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCEEEEECCCEEEE
T ss_conf             ------77---61589--98068--8836-98368477558982785005558876799999999868177633853897


Q ss_pred             ----CEEEEECCCCC--------------CCHHHHHHH-HHHHCCCCC
Q ss_conf             ----14665067543--------------303567543-332102454
Q 537021.9.peg.4  138 ----KFIFATTEIRK--------------IPITVLSRC-QRFDLHRIS  166 (369)
Q Consensus       138 ----~fil~t~~~~~--------------ll~TI~SRc-q~~~f~~l~  166 (369)
                          ..||+|.||-.              +++++.||- ..+-+.-.+
T Consensus       161 L~ar~sVlAaaNP~~g~yd~~~~~~~ni~Lp~~lLsRFDLif~l~D~~  208 (327)
T pfam00493       161 LNARCSVLAAANPIFGRYDPKKSVAENINLPPPLLSRFDLIFVLLDKP  208 (327)
T ss_pred             ECCCCEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCEEEEEEEECCC
T ss_conf             258717998527767737888898885589767745010798840689


No 171
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=98.04  E-value=8.2e-06  Score=63.02  Aligned_cols=113  Identities=24%  Similarity=0.287  Sum_probs=61.9

Q ss_pred             CCCHHHHHHHHHHHHHC-CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCHHHHHHHC---CCCC
Q ss_conf             92848999999999982-87670620107879888899999999961468777886658-7899977999977---9877
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKS-GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVE-FEGFGEHCQAIIR---GNHV   75 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~-~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~-~c~~c~~c~~i~~---~~~~   75 (369)
                      +||+....+.+++.++. .+-....|+.|++|+||+.+|+++-..-    .....|... -|+.-+. ..+..   |.  
T Consensus         1 lIG~S~~m~~l~~~i~~~a~~~~pVLI~GE~GtGK~~lAr~IH~~S----~r~~~pfi~vnc~~~~~-~~le~~LFG~--   73 (168)
T pfam00158         1 LIGESPAMQEVLELAKRVAPTDATVLITGESGTGKELFARAIHQLS----PRADGPFVAVNCAAIPE-ELLESELFGH--   73 (168)
T ss_pred             CEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHC----CCCCCCCCCCCCCCCCH-HHHHHHHCCC--
T ss_conf             9738999999999999995889988998999888899999999852----43568831256789987-7999987587--


Q ss_pred             CCCCCCCCCCCCHHHHH-HHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHH
Q ss_conf             82224533223345556-6555445654204652377511566480016789999972
Q 537021.9.peg.4   76 DVVELDAASHTSIDDVR-EIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEE  132 (369)
Q Consensus        76 d~~e~~~~s~~~id~ir-~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEE  132 (369)
                         + .++ -++..+.+ -++       ..+..-..++||++.|+.+.|..||+.||+
T Consensus        74 ---~-~g~-f~ga~~~~~G~l-------e~A~gGTL~LdeI~~L~~~~Q~~Ll~~L~~  119 (168)
T pfam00158        74 ---E-KGA-FTGAVSDRKGLF-------ELADGGTLFLDEIGELPLELQAKLLRVLQE  119 (168)
T ss_pred             ---C-CCC-CCCCCCCCCCCE-------EECCCCEEECCCHHHCCHHHHHHHHHHHHC
T ss_conf             ---6-676-689875789964-------226998788024413999999999999857


No 172
>KOG0737 consensus
Probab=98.04  E-value=2e-05  Score=60.21  Aligned_cols=169  Identities=18%  Similarity=0.300  Sum_probs=97.4

Q ss_pred             CHHHHHHHHHHHHH----------CCCC---CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             84899999999998----------2876---7062010787988889999999996146877788665878999779999
Q 537021.9.peg.4    3 GQKPMIKTLTNAFK----------SGRI---AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAI   69 (369)
Q Consensus         3 Gq~~~~~~l~~~~~----------~~~~---~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i   69 (369)
                      |=+.+++.|+..|.          .+++   +-..|++||||+|||.+|.+.|+..-+.--..                 
T Consensus        96 gLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv-----------------  158 (386)
T KOG0737          96 GLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINV-----------------  158 (386)
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCEE-----------------
T ss_conf             528999999987752012466641453146864305118998218899999998727971000-----------------


Q ss_pred             HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCC------HHHHHHHH---------HHHCC
Q ss_conf             7798778222453322334555665554456542046523775115664800------16789999---------97212
Q 537021.9.peg.4   70 IRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTA------AFNGLLKT---------LEEPP  134 (369)
Q Consensus        70 ~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~------a~NaLLK~---------lEEPp  134 (369)
                      ..++.+| -|.        -+-..+...+..-|+.=..-|+.|||+|.|..+      -+-+-.|+         .-.+.
T Consensus       159 ~~s~lt~-KWf--------gE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~  229 (386)
T KOG0737         159 SVSNLTS-KWF--------GEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDS  229 (386)
T ss_pred             ECCCCCH-HHH--------HHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             1365532-667--------7788899999820653486156566588898640464279999999999998616467887


Q ss_pred             CCCCEEE-EECCCCCCCHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
Q ss_conf             2111466-5067543303567543-332102454001356787643101345625664456531676
Q 537021.9.peg.4  135 PHVKFIF-ATTEIRKIPITVLSRC-QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDG  199 (369)
Q Consensus       135 ~~~~fil-~t~~~~~ll~TI~SRc-q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~G  199 (369)
                      . .+.+| +|+.|..+=..|++|- ++|...-+...+=.+.|+=|++.|+++ ++=.+..+|+..+|
T Consensus       230 ~-rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~G  294 (386)
T KOG0737         230 E-RVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEG  294 (386)
T ss_pred             C-EEEEEECCCCCCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHCCC
T ss_conf             1-59997079998437899998476436537984444999999994243468-77698888876089


No 173
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.01  E-value=3.2e-05  Score=58.62  Aligned_cols=200  Identities=19%  Similarity=0.274  Sum_probs=117.3

Q ss_pred             CCCHHHHHHHHHHHHH---CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHH------
Q ss_conf             9284899999999998---28767062010787988889999999996146877788665-8789997799997------
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFK---SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV-EFEGFGEHCQAII------   70 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~---~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~-~~c~~c~~c~~i~------   70 (369)
                      +||+....+.+++.+.   .-..|  .|++|+.|+||-.+||++=+.    ++...+|-+ --|+..+.- .+.      
T Consensus       143 liG~S~am~~l~~~i~kvA~s~a~--VLI~GESGtGKElvAr~IH~~----S~R~~~PFVavNcaAip~~-l~ESELFGh  215 (464)
T COG2204         143 LVGESPAMQQLRRLIAKVAPSDAS--VLITGESGTGKELVARAIHQA----SPRAKGPFIAVNCAAIPEN-LLESELFGH  215 (464)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCC--EEEECCCCCCHHHHHHHHHHH----CCCCCCCCEEEECCCCCHH-HHHHHHHCC
T ss_conf             520699999999999998477997--899778987589999999860----7445899256334648988-877776145


Q ss_pred             -CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC-----------CCCC
Q ss_conf             -7987782224533223345556655544565420465237751156648001678999997212-----------2111
Q 537021.9.peg.4   71 -RGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP-----------PHVK  138 (369)
Q Consensus        71 -~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp-----------~~~~  138 (369)
                       .|.|.      +|...++       ..+..  ..|  =..++||...|..+.|..||+.|+|--           -+|.
T Consensus       216 ekGAFT------GA~~~r~-------G~fE~--A~G--GTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvR  278 (464)
T COG2204         216 EKGAFT------GAITRRI-------GRFEQ--ANG--GTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVR  278 (464)
T ss_pred             CCCCCC------CCCCCCC-------CCEEE--CCC--CEEEEECCCCCCHHHHHHHHHHHHCCEEEECCCCCEECEEEE
T ss_conf             656767------7643457-------61577--379--658732311099999999999987070673588860000169


Q ss_pred             EEEEECCC-------CCCCHHHHHHHHHHHC--CCCCC--HHH----HHHHHHHHHHCC---CCCCHHHHHHH-HHCCCC
Q ss_conf             46650675-------4330356754333210--24540--013----567876431013---45625664456-531676
Q 537021.9.peg.4  139 FIFATTEI-------RKIPITVLSRCQRFDL--HRISI--GDL----IELFTKILQEES---IEFDPEAVAMI-ARASDG  199 (369)
Q Consensus       139 fil~t~~~-------~~ll~TI~SRcq~~~f--~~l~~--~~i----~~~L~~i~~~E~---i~~d~~~l~~i-a~~s~G  199 (369)
                      +|-+|+..       .+.-+-.-.|--++++  +|+..  ++|    ..+|.+.+...|   ..++++++..+ ++-.-|
T Consensus       279 iIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPG  358 (464)
T COG2204         279 IIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPG  358 (464)
T ss_pred             EEEECCCCHHHHHHCCCCHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCH
T ss_conf             99605778999988197378888652331104876223620079999999999999809998887999999997389981


Q ss_pred             CCCHHHHCCCCCCCHHHCC-CCHHHH
Q ss_conf             4200110001110000001-210322
Q 537021.9.peg.4  200 SARDGLSLLDQAIARCNDK-IVTSSV  224 (369)
Q Consensus       200 slR~Al~lLeq~i~~~~~~-i~~e~v  224 (369)
                      |+|.--|..+++...+++. ++.++.
T Consensus       359 NVREL~N~ver~~il~~~~~i~~~~l  384 (464)
T COG2204         359 NVRELENVVERAVILSEGPEIEVEDL  384 (464)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCHHHC
T ss_conf             89999999999985178654665441


No 174
>pfam05621 TniB Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.
Probab=98.00  E-value=0.00011  Score=54.59  Aligned_cols=195  Identities=13%  Similarity=0.150  Sum_probs=103.2

Q ss_pred             CCHHHHHHHHHHHH------HCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf             28489999999999------828767062010787988889999999996146877788665878999779999779877
Q 537021.9.peg.4    2 IGQKPMIKTLTNAF------KSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHV   75 (369)
Q Consensus         2 iGq~~~~~~l~~~~------~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~   75 (369)
                      ||...+.+.|.+.-      ...|.|. +|+.|+.|.|||++++.|++.-.-.   .+ +..   ..|+- -.+....-|
T Consensus        37 IgY~~A~~~L~~Le~Ll~~P~~~Rmp~-lLlvGdsnnGKT~Iv~rF~~~hp~~---~d-~~~---~~~PV-l~vq~P~~p  107 (302)
T pfam05621        37 IGYPRAVEALNRLEALYAWPNKQRMPN-LLLVGPTNNGKSMIVEKFRRAHPAG---SD-ADQ---EHIPV-LVVQMPSEP  107 (302)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCC-EEEEECCCCCHHHHHHHHHHHCCCC---CC-CCC---CCCEE-EEEECCCCC
T ss_conf             277899999999999984686468875-5887079887899999999967998---78-666---70218-999769998


Q ss_pred             CCCCC---------CC-CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHC---CCCHHHHH---HHHHHHCCCCCCE
Q ss_conf             82224---------53-322334555665554456542046523775115664---80016789---9999721221114
Q 537021.9.peg.4   76 DVVEL---------DA-ASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQML---STAAFNGL---LKTLEEPPPHVKF  139 (369)
Q Consensus        76 d~~e~---------~~-~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m---~~~a~NaL---LK~lEEPp~~~~f  139 (369)
                      |...+         .+ ..+..+.+-++....+   =-.-+-|++||||+|.+   |...|.++   ||.|--= -.+-+
T Consensus       108 ~~~~lY~~IL~~l~aP~~~~~~~~~~~~~~~~l---l~~~~vrmLIIDEiHnlL~Gs~~~qr~~ln~LK~L~Ne-l~Ipi  183 (302)
T pfam05621       108 SVIRFYVALLAAMGAPLRPRPRLPEMEQLALAL---LRKVGVRMLVIDELHNVLAGNSVNRREFLNLLRFLGNE-LRIPL  183 (302)
T ss_pred             CHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH---HHHCCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHHHC-CCCCE
T ss_conf             868999999998378778887789999999999---99749878998543656048688999999999998636-58786


Q ss_pred             EEEECC-CCCCCHH---HHHHHHHHHCCCCCCHHHHHH-HHHH---H--H-HCCCCCCHHHHHHHHHCCCCCCCHHHHCC
Q ss_conf             665067-5433035---675433321024540013567-8764---3--1-01345625664456531676420011000
Q 537021.9.peg.4  140 IFATTE-IRKIPIT---VLSRCQRFDLHRISIGDLIEL-FTKI---L--Q-EESIEFDPEAVAMIARASDGSARDGLSLL  208 (369)
Q Consensus       140 il~t~~-~~~ll~T---I~SRcq~~~f~~l~~~~i~~~-L~~i---~--~-~E~i~~d~~~l~~ia~~s~GslR~Al~lL  208 (369)
                      +++.+. .-..+.|   +.||...+.+++-..++=... |..+   +  . ..++ .+++....|...|+|.+++--.++
T Consensus       184 V~vGt~eA~~ai~tD~QlasRF~~~~Lp~W~~d~ef~~LL~sfe~~LPL~~~S~L-~~~~~a~~I~~~SeG~iGei~~Ll  262 (302)
T pfam05621       184 VGVGTRDAYLAIRSDDQLENRFEPMLLPPWEANDDCCSLLASFAASLPLRRPSPI-ATLDMARYLLTRSEGTIGELAHLL  262 (302)
T ss_pred             EEECCHHHHHHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             9953199999970688888505861168888980899999999986888777688-889999999998599287999999


Q ss_pred             CC
Q ss_conf             11
Q 537021.9.peg.4  209 DQ  210 (369)
Q Consensus       209 eq  210 (369)
                      .+
T Consensus       263 ~~  264 (302)
T pfam05621       263 MA  264 (302)
T ss_pred             HH
T ss_conf             99


No 175
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.99  E-value=0.00021  Score=52.58  Aligned_cols=124  Identities=19%  Similarity=0.378  Sum_probs=71.0

Q ss_pred             CCCHHHHHHHH---HHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf             92848999999---999982876706201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4    1 MIGQKPMIKTL---TNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV   77 (369)
Q Consensus         1 iiGq~~~~~~l---~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~   77 (369)
                      ++|-+...+.|   .....+|.-+.--|++|.+|+||+++.+++-...                         .+..+++
T Consensus        62 l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~-------------------------~~~glrL  116 (287)
T COG2607          62 LVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY-------------------------ADEGLRL  116 (287)
T ss_pred             HHCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHH-------------------------HHCCCEE
T ss_conf             727318999999989999728865236776377777479999999998-------------------------7417707


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE-ECHHHCCCCHHHHHHHH-----HHHCCCCCCEEEEECCCCCCCH
Q ss_conf             22453322334555665554456542046523775-11566480016789999-----9721221114665067543303
Q 537021.9.peg.4   78 VELDAASHTSIDDVREIIDQIYYKPISARFRVYIM-DEVQMLSTAAFNGLLKT-----LEEPPPHVKFIFATTEIRKIPI  151 (369)
Q Consensus        78 ~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~ii-d~a~~m~~~a~NaLLK~-----lEEPp~~~~fil~t~~~~~ll~  151 (369)
                      +|++..   -+...-.|.+.+.-.|    .|+||+ |+---=.-+.+-..||+     +|.+|.||+|.-+++--+-++.
T Consensus       117 VEV~k~---dl~~Lp~l~~~Lr~~~----~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e  189 (287)
T COG2607         117 VEVDKE---DLATLPDLVELLRARP----EKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPE  189 (287)
T ss_pred             EEECHH---HHHHHHHHHHHHHCCC----CEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCH
T ss_conf             997688---8865799999996188----608999567777778138999999853885568870799971587533627


Q ss_pred             HHHHH
Q ss_conf             56754
Q 537021.9.peg.4  152 TVLSR  156 (369)
Q Consensus       152 TI~SR  156 (369)
                      ...-|
T Consensus       190 ~~~dn  194 (287)
T COG2607         190 DMKDN  194 (287)
T ss_pred             HHHHC
T ss_conf             66427


No 176
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482   This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=97.98  E-value=3.8e-06  Score=65.45  Aligned_cols=40  Identities=30%  Similarity=0.390  Sum_probs=34.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHH
Q ss_conf             9284899999999998287670620107879888899999999
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIAR   43 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~   43 (369)
                      |+||++.++.|.=++.-|   |-+||.||||+|||.+|+.+--
T Consensus       196 v~GQ~~akRAleIAaAGG---HNlll~GPPGsGKTmla~r~~g  235 (505)
T TIGR00368       196 VKGQQHAKRALEIAAAGG---HNLLLLGPPGSGKTMLASRLQG  235 (505)
T ss_pred             CCCHHHCCHHHHHHHHCC---CCEEEECCCCCCHHHHHHHHHC
T ss_conf             545101102677753135---6437678249626899987510


No 177
>KOG0739 consensus
Probab=97.98  E-value=0.00026  Score=51.97  Aligned_cols=271  Identities=14%  Similarity=0.203  Sum_probs=128.3

Q ss_pred             CCCHHHHHHHHHHHH----------HCCCCC-EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             928489999999999----------828767-062010787988889999999996146877788665878999779999
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAF----------KSGRIA-QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAI   69 (369)
Q Consensus         1 iiGq~~~~~~l~~~~----------~~~~~~-ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i   69 (369)
                      |-|-+.+++.|+.+|          ..+|.| .++|++||||+||+-+|.+.|-.-|.+  .                  
T Consensus       135 VAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST--F------------------  194 (439)
T KOG0739         135 VAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST--F------------------  194 (439)
T ss_pred             HCCCHHHHHHHHHHEEECCCCHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCC--E------------------
T ss_conf             01405689998754350002535415887754257886799975779999987414770--6------------------


Q ss_pred             HCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC----CCHHHHHHHHHHHCC---------
Q ss_conf             779877822--24533223345556655544565420465237751156648----001678999997212---------
Q 537021.9.peg.4   70 IRGNHVDVV--ELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS----TAAFNGLLKTLEEPP---------  134 (369)
Q Consensus        70 ~~~~~~d~~--e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~----~~a~NaLLK~lEEPp---------  134 (369)
                      .+-+.-|++  |+        .+-..|..++.-..-+.+.-||+|||.|.|.    ..-..|-+++=-|.-         
T Consensus       195 FSvSSSDLvSKWm--------GESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d  266 (439)
T KOG0739         195 FSVSSSDLVSKWM--------GESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGND  266 (439)
T ss_pred             EEEEHHHHHHHHH--------CCHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             8730178899873--------21799999999998734994798634444326887771177777777888764066658


Q ss_pred             CCCCEEEEECC-CCCCCHHHHHHHH-HHHCCCCCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCC
Q ss_conf             21114665067-5433035675433-3210245400135678764-3101345625664456531676420011000111
Q 537021.9.peg.4  135 PHVKFIFATTE-IRKIPITVLSRCQ-RFDLHRISIGDLIELFTKI-LQEESIEFDPEAVAMIARASDGSARDGLSLLDQA  211 (369)
Q Consensus       135 ~~~~fil~t~~-~~~ll~TI~SRcq-~~~f~~l~~~~i~~~L~~i-~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~  211 (369)
                      ..-+.+|-+|| |-.|=..||-|.- ++.. |++..-...+.-++ +-.---.+.+.....+++..+|=-+.-+++.-+-
T Consensus       267 ~~gvLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrD  345 (439)
T KOG0739         267 NDGVLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRD  345 (439)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHCCEEC-CCCCHHHHHHHHEECCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEHH
T ss_conf             886489723788436779999876502301-0873787655503204788641335669999764378776754778666


Q ss_pred             CCH-HHCCC-CHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             000-00012-1032200013567777788887630136334678876543-04762135787775348999999745741
Q 537021.9.peg.4  212 IAR-CNDKI-VTSSVRLMLALADRNRIMDLFGYLIKGDIINVLQEFSSQY-DSGVNPSVILHDLAEFTHLVTRIKYIPEM  288 (369)
Q Consensus       212 i~~-~~~~i-~~e~v~~llg~~~~~~i~~Ll~ai~~~d~~~al~~l~~l~-~~g~d~~~iL~~Ll~~~rdll~~k~~~~~  288 (369)
                      ..+ .--++ +.-...+.-|-...+.+.+++.-+.-+|...+-..|.+.- +.-.+|..-+.+++.-   +..       
T Consensus       346 almePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~---l~~-------  415 (439)
T KOG0739         346 ALMEPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKS---LSR-------  415 (439)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHCCCCHHHCCCCCCCHHHHHHH---HHH-------
T ss_conf             4423588751023220068999834303456889999962266543028786605997409999999---862-------


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCH
Q ss_conf             22344998899999999862998
Q 537021.9.peg.4  289 ADTLLYSEAENARALQYSKEVSI  311 (369)
Q Consensus       289 ~~~~~~~~~e~~~i~~~a~~i~~  311 (369)
                       ....+++++.....++.+-++.
T Consensus       416 -tkPTvn~~Dl~k~~~Ft~dFGq  437 (439)
T KOG0739         416 -TKPTVNEDDLLKHEKFTEDFGQ  437 (439)
T ss_pred             -CCCCCCHHHHHHHHHHHHHHCC
T ss_conf             -4897777889999998876342


No 178
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937    Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12).     Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , .   More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=97.95  E-value=2.8e-05  Score=59.13  Aligned_cols=156  Identities=21%  Similarity=0.301  Sum_probs=90.7

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC-CCCCCCCHHHHHHHHHHHH
Q ss_conf             706201078798888999999999614687778866587899977999977987782224-5332233455566555445
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL-DAASHTSIDDVREIIDQIY   99 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~-~~~s~~~id~ir~l~~~~~   99 (369)
                      |...|++||||+|||.+|+++|...+.+--..-       |     ..+..      .+| +     |.-=||++-+=+.
T Consensus       156 PKGvLLyGPPGtGKTLlAKAvA~et~ATFIrvV-------g-----SElV~------KyIGE-----GArLV~~~F~LAk  212 (364)
T TIGR01242       156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV-------G-----SELVR------KYIGE-----GARLVREVFELAK  212 (364)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEE-------H-----HHHHH------HHHCC-----HHHHHHHHHHHHH
T ss_conf             986570075797688999986314551268860-------4-----44444------44133-----1689999999853


Q ss_pred             HHHHCCCCCEEEEECHHHCC-----------CCHHHHHHHHHHH-----CCCCCCEEEEECCCCCCCHHHHHHH---HHH
Q ss_conf             65420465237751156648-----------0016789999972-----1221114665067543303567543---332
Q 537021.9.peg.4  100 YKPISARFRVYIMDEVQMLS-----------TAAFNGLLKTLEE-----PPPHVKFIFATTEIRKIPITVLSRC---QRF  160 (369)
Q Consensus       100 ~~p~~~~~kv~iid~a~~m~-----------~~a~NaLLK~lEE-----Pp~~~~fil~t~~~~~ll~TI~SRc---q~~  160 (369)
                          +--.-|++|||.|...           ++-+-.|+-.|=|     |-.+|..|-+||.++-|=|+|.-=-   +.+
T Consensus       213 ----EKaPsIiFIDEiDAiaakR~~~~TsGdREV~RTlmQLLAElDGFd~rg~VkviaATNR~DilDPA~LRPGRFDR~I  288 (364)
T TIGR01242       213 ----EKAPSIIFIDEIDAIAAKRVDSSTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPAILRPGRFDRII  288 (364)
T ss_pred             ----CCCCCEEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHCCCCCCCCCCCCCEE
T ss_conf             ----0698168610133354321146778731578899999975248887676168872076202043214888613257


Q ss_pred             HCCCCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHCCCCCCCHHH
Q ss_conf             1024540013567876431013456256-64456531676420011
Q 537021.9.peg.4  161 DLHRISIGDLIELFTKILQEESIEFDPE-AVAMIARASDGSARDGL  205 (369)
Q Consensus       161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~-~l~~ia~~s~GslR~Al  205 (369)
                      .. |+|..+=.--+-+| ...++.+.++ .++.||+..+|..+.-|
T Consensus       289 EV-PlP~~~GR~eIlki-HTr~~~la~dVdl~~~A~~TeG~sGAdl  332 (364)
T TIGR01242       289 EV-PLPDFEGRLEILKI-HTRKMKLAEDVDLEAIAKLTEGASGADL  332 (364)
T ss_pred             EC-CCCCCCCHHHHHHH-HHCCCCCCCCCCHHHHHHHHCCCCCCHH
T ss_conf             31-69783220566555-2100001235687999987478866304


No 179
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.93  E-value=7.6e-05  Score=55.88  Aligned_cols=149  Identities=18%  Similarity=0.262  Sum_probs=77.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH--CCCCCC--
Q ss_conf             9284899999999998287670620107879888899999999961468777886658789997799997--798778--
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAII--RGNHVD--   76 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~--~~~~~d--   76 (369)
                      |.||+.++..|.=+..-+   |-+|+.||||+|||.+|+.+.--|-=....          +.-.+..|.  .|..++  
T Consensus       193 v~Gq~~akraleIAAAGg---HnlLl~GpPG~GKTMlA~rlp~ILPpLt~~----------e~lEv~~I~Svag~~~~~~  259 (506)
T PRK09862        193 VVGQEQGKRGLEITAAGG---HNLLLIGPPGTGKTMLASRINGLLPDLSNE----------EALESAAILSLVNAESVQK  259 (506)
T ss_pred             HCCCHHHHHHHHHHHCCC---CCEEEECCCCCCHHHHHHHHHHCCCCCCHH----------HHHHHHHHHHHHCCCCCCC
T ss_conf             369799999999974468---865987699945989997751238998989----------9999999998718987777


Q ss_pred             CCCCCC--CCCCCHHHHHHHH--------HHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHH-------------C
Q ss_conf             222453--3223345556655--------5445654204652377511566480016789999972-------------1
Q 537021.9.peg.4   77 VVELDA--ASHTSIDDVREII--------DQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEE-------------P  133 (369)
Q Consensus        77 ~~e~~~--~s~~~id~ir~l~--------~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEE-------------P  133 (369)
                      .+...+  +-|.++- .-.++        ..+++    +..=|.++||.-.++++.-++|+--||+             +
T Consensus       260 ~~~~rPfR~PHHs~S-~~aliGGG~~~~PGEISL----AH~GVLFLDElpEF~r~vLe~LRqPLE~g~I~IsRa~~~~~~  334 (506)
T PRK09862        260 QWRQRPFRSPHHSAS-LTAMVGGGAIPGPGEISL----AHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITY  334 (506)
T ss_pred             CCCCCCEECCCCCCC-HHHHHCCCCCCCCCCEEE----CCCCEEEECCHHCCCHHHHHHHHHHHCCCEEEEEECCCEEEE
T ss_conf             546685037887654-766637999999972221----357578845500068889998776224775999966867986


Q ss_pred             CCCCCEEEEECCC---CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             2211146650675---4330356754333210245400135678764
Q 537021.9.peg.4  134 PPHVKFIFATTEI---RKIPITVLSRCQRFDLHRISIGDLIELFTKI  177 (369)
Q Consensus       134 p~~~~fil~t~~~---~~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i  177 (369)
                      |.+..+|. +.||   ...... ..||        ++.++..|+.++
T Consensus       335 PA~F~LVa-AmNPCPCG~~~~~-~~~C--------t~~~~~rY~~rl  371 (506)
T PRK09862        335 PARFQLVA-AMNPSPTGHYQGN-HNRC--------TPEQTLRYLNRL  371 (506)
T ss_pred             CCHHHHEH-HCCCCCCCCCCCC-CCCC--------CHHHHHHHHHHC
T ss_conf             15331111-0378888889999-7778--------989999998656


No 180
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.93  E-value=0.00027  Score=51.75  Aligned_cols=186  Identities=18%  Similarity=0.197  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCC---CCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             4899999999998287670620107879888899999999961468777---8866587899977999977987782224
Q 537021.9.peg.4    4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHI---DVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~---~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      |+..+..+...++.|+-=  ...+|+-|+|||...|+++.+++-.....   +.|+...-+.|.  ..+....      -
T Consensus        36 h~e~l~~l~~~i~d~qg~--~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~--ai~~~l~------~  105 (269)
T COG3267          36 HNEALLMLHAAIADGQGI--LAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLE--AIVADLE------S  105 (269)
T ss_pred             HHHHHHHHHHHHHCCCCE--EEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHH--HHHHHHC------C
T ss_conf             159999977777517855--99974477763699999998557885179983576301788999--9999840------5


Q ss_pred             CCCCCC--CHHHHHHHHHHHHHHHHCCCC-CEEEEECHHHCCCCHHHHHHHHHHHCCCCCC--EEEEECCCCCC------
Q ss_conf             533223--345556655544565420465-2377511566480016789999972122111--46650675433------
Q 537021.9.peg.4   81 DAASHT--SIDDVREIIDQIYYKPISARF-RVYIMDEVQMLSTAAFNGLLKTLEEPPPHVK--FIFATTEIRKI------  149 (369)
Q Consensus        81 ~~~s~~--~id~ir~l~~~~~~~p~~~~~-kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~--fil~t~~~~~l------  149 (369)
                      ++..+.  ..+++   -..+.---.+|+| -+.++||||.++-++--+|+.+.|---+.+.  =|+..-+|.--      
T Consensus       106 ~p~~~~~~~~e~~---~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~  182 (269)
T COG3267         106 QPKVNVNAVLEQI---DRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLP  182 (269)
T ss_pred             CCCCHHHHHHHHH---HHHHHHHHHHCCCCEEEEEHHHHHHCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHCHH
T ss_conf             8320068899999---9999999981788737850167661754899999988620346672114550780114354428


Q ss_pred             -CHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHCCCCCCC
Q ss_conf             -0356754333-2102454001356787643101345---625664456531676420
Q 537021.9.peg.4  150 -PITVLSRCQR-FDLHRISIGDLIELFTKILQEESIE---FDPEAVAMIARASDGSAR  202 (369)
Q Consensus       150 -l~TI~SRcq~-~~f~~l~~~~i~~~L~~i~~~E~i~---~d~~~l~~ia~~s~GslR  202 (369)
                       +.-+.=||.. |.++|++.++...||++-++.-+-.   ++++++..|...++|=+|
T Consensus       183 ~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~  240 (269)
T COG3267         183 VLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPR  240 (269)
T ss_pred             HHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHH
T ss_conf             8985431677899538867478999999998505899666770578999998525548


No 181
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.90  E-value=9.5e-05  Score=55.16  Aligned_cols=111  Identities=23%  Similarity=0.340  Sum_probs=56.1

Q ss_pred             EEHHCCCCCCCHHHHH-HHHHHHHCCCCCCCCCCCCCCCC-CCHHHHHHHCCC---------CCCCCCCCCCCCCCHHHH
Q ss_conf             6201078798888999-99999961468777886658789-997799997798---------778222453322334555
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTA-RIIARSLNYKTAHIDVPTVEFEG-FGEHCQAIIRGN---------HVDVVELDAASHTSIDDV   91 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a-~~~A~~l~c~~~~~~~~~~~~c~-~c~~c~~i~~~~---------~~d~~e~~~~s~~~id~i   91 (369)
                      --+++|-||+||||+. +++|. |........ +.+..+. +.+...++.+.-         .++....     +. ++.
T Consensus       164 ~~vIsGGPGTGKTttV~~lLa~-l~~~~~~~~-l~I~LaAPTGKAAaRL~Esi~~~~~~l~~~~~~~~~-----~p-~~a  235 (607)
T PRK10875        164 ISVISGGPGTGKTTTVAKLLAA-LIQLADGER-CRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKR-----IP-EDA  235 (607)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH-HHHHCCCCC-CEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHC-----CC-CCC
T ss_conf             7899679998778899999999-999645899-708998822899999999998787534766566633-----76-556


Q ss_pred             HHHHHHHHHHHHCCC----------CCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf             665554456542046----------52377511566480016789999972122111466506
Q 537021.9.peg.4   92 REIIDQIYYKPISAR----------FRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATT  144 (369)
Q Consensus        92 r~l~~~~~~~p~~~~----------~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~  144 (369)
                      .-|..-+...|...+          +-|+|||||-|+...-..+||+-+   |+++.+||+..
T Consensus       236 ~TiHRLLg~~p~~~~f~~~~~nPL~~DvlIVDEASMVDl~Lm~~LL~Al---p~~aRLILvGD  295 (607)
T PRK10875        236 STLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMIDLPMMSRLIDAL---PDHARVIFLGD  295 (607)
T ss_pred             EEHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC---CCCCEEEEECC
T ss_conf             6589752967898765657799998898999073366599999999828---99988999656


No 182
>KOG0741 consensus
Probab=97.90  E-value=4.4e-05  Score=57.65  Aligned_cols=122  Identities=25%  Similarity=0.354  Sum_probs=70.8

Q ss_pred             HHHHHHHHHCCC----------CCE--EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf             999999998287----------670--62010787988889999999996146877788665878999779999779877
Q 537021.9.peg.4    8 IKTLTNAFKSGR----------IAQ--SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHV   75 (369)
Q Consensus         8 ~~~l~~~~~~~~----------~~h--a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~   75 (369)
                      ...++++..+.-          ++|  ..|++||||+|||.+||-+-+-||...+...      +|  +   .|...   
T Consensus       231 s~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIV------NG--P---eIL~K---  296 (744)
T KOG0741         231 SDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIV------NG--P---EILNK---  296 (744)
T ss_pred             HHHHHHHHHHHCCCHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC------CC--H---HHHHH---
T ss_conf             9999998776329988998719511235788779998701899998787457998634------75--7---88987---


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHH----HHHHHCCCCCEEEEECHHHCC-------------CCHHHHHHHHHH--HCCCC
Q ss_conf             82224533223345556655544----565420465237751156648-------------001678999997--21221
Q 537021.9.peg.4   76 DVVELDAASHTSIDDVREIIDQI----YYKPISARFRVYIMDEVQMLS-------------TAAFNGLLKTLE--EPPPH  136 (369)
Q Consensus        76 d~~e~~~~s~~~id~ir~l~~~~----~~~p~~~~~kv~iid~a~~m~-------------~~a~NaLLK~lE--EPp~~  136 (369)
                         ++ |   -+=+.||+|-.++    +-..-.++--|+|+||.|..-             -+--|-||--|.  |--.|
T Consensus       297 ---YV-G---eSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNN  369 (744)
T KOG0741         297 ---YV-G---ESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNN  369 (744)
T ss_pred             ---HH-C---CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHC
T ss_conf             ---60-6---3078899998757999984376677259996346799974488789886318999999985322876616


Q ss_pred             CCEEEEECCCCCCC
Q ss_conf             11466506754330
Q 537021.9.peg.4  137 VKFIFATTEIRKIP  150 (369)
Q Consensus       137 ~~fil~t~~~~~ll  150 (369)
                      .+-|-.|+..+-|=
T Consensus       370 ILVIGMTNR~DlID  383 (744)
T KOG0741         370 ILVIGMTNRKDLID  383 (744)
T ss_pred             EEEEECCCCHHHHH
T ss_conf             78994047366678


No 183
>KOG0735 consensus
Probab=97.86  E-value=0.00011  Score=54.62  Aligned_cols=171  Identities=16%  Similarity=0.295  Sum_probs=101.1

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             70620107879888899999999961468777886658789997799997798778222453322334555665554456
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYY  100 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~  100 (369)
                      +.+.|+.||+|+|||.+|+++++.+-  .+.....      .--+|..           +++   .+.+.|...+.++--
T Consensus       431 ~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv------~~v~Cs~-----------l~~---~~~e~iQk~l~~vfs  488 (952)
T KOG0735         431 HGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHV------EIVSCST-----------LDG---SSLEKIQKFLNNVFS  488 (952)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHC--CCCCEEE------EEEECHH-----------CCC---HHHHHHHHHHHHHHH
T ss_conf             66189867998777699999998751--5650699------9975221-----------042---048999999999999


Q ss_pred             HHHCCCCCEEEEECHHHCCC-----CHH-----H---HHH----HHHHHCCCCCCEEEEECCCCCCCHHHHHHH--H-HH
Q ss_conf             54204652377511566480-----016-----7---899----999721221114665067543303567543--3-32
Q 537021.9.peg.4  101 KPISARFRVYIMDEVQMLST-----AAF-----N---GLL----KTLEEPPPHVKFIFATTEIRKIPITVLSRC--Q-RF  160 (369)
Q Consensus       101 ~p~~~~~kv~iid~a~~m~~-----~a~-----N---aLL----K~lEEPp~~~~fil~t~~~~~ll~TI~SRc--q-~~  160 (369)
                      ..+.-..-|+++|+.|-+--     .++     +   ++|    |.--+.-..+.||....+.+.+.|+..|--  | +.
T Consensus       489 e~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~  568 (952)
T KOG0735         489 EALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVI  568 (952)
T ss_pred             HHHHHCCCEEEECCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHCCHHHCCCCCEEEEE
T ss_conf             98863780899705035405684447730289999999999999998706857999985143420385334763147888


Q ss_pred             HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCC-CHHHHCCCCCCC
Q ss_conf             10245400135678764310134562566445653167642-001100011100
Q 537021.9.peg.4  161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSA-RDGLSLLDQAIA  213 (369)
Q Consensus       161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~Gsl-R~Al~lLeq~i~  213 (369)
                      .++++...+=...|..++.+-......+.+++++...+|=. +|-.-+.|+++.
T Consensus       569 ~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~  622 (952)
T KOG0735         569 ALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIH  622 (952)
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             158923567999999999755345456789988876078440447999999999


No 184
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit; InterPro: IPR012804   Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) , . The corresponding cobalt chelatases are not homologous.   Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (IPR010388 from INTERPRO). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis, (IPR011953 from INTERPRO, IPR006537 from INTERPRO, IPR006538 from INTERPRO) .    The two pathways differ in the point of cobalt insertion during corrin ring formation . There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction .   Cobaltochelatase shows similarities with magnesium chelatase, which is also a complex ATP-dependent enzyme made up of two separable components. However, unlike the situation in cobaltochelatase, one of these two components is membrane bound in magnesium chelatase . .
Probab=97.85  E-value=1.8e-05  Score=60.40  Aligned_cols=272  Identities=17%  Similarity=0.197  Sum_probs=140.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHH-------CCCCCCCCCCCCCCCCCCHHHHHHHC--
Q ss_conf             928489999999999828767062010787988889999999996-------14687778866587899977999977--
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSL-------NYKTAHIDVPTVEFEGFGEHCQAIIR--   71 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l-------~c~~~~~~~~~~~~c~~c~~c~~i~~--   71 (369)
                      ||||+..+..|-=...+-+|.- .|+.|++||||+|+||.|+.-|       -|.-.-...   .|.-.|+.|+.-..  
T Consensus         6 iVGQe~LK~ALLL~Av~P~iGG-VLirG~KGTAKSTaaR~L~~LLP~i~~v~gC~f~cdP~---~P~~~C~~C~~~~~~~   81 (688)
T TIGR02442         6 IVGQEDLKLALLLNAVNPRIGG-VLIRGEKGTAKSTAARGLAALLPDIDVVAGCPFSCDPD---DPEEWCEECRRKLEEQ   81 (688)
T ss_pred             CCCHHHHHHHHHHEEECCCCCE-EEEECCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCC---CCCCCCHHHHHHHHCC
T ss_conf             2142798653210025266370-78877888627898884876160236640478887778---8704006767555204


Q ss_pred             CCCCC------CCCC-CCCCC----CCHHHHHHHHH-HHHHHHH---CCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf             98778------2224-53322----33455566555-4456542---046523775115664800167899999721221
Q 537021.9.peg.4   72 GNHVD------VVEL-DAASH----TSIDDVREIID-QIYYKPI---SARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPH  136 (369)
Q Consensus        72 ~~~~d------~~e~-~~~s~----~~id~ir~l~~-~~~~~p~---~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~  136 (369)
                      |+.+-      |+.+ =+|+.    .++|=-|-|.+ .-.|.|=   ++.+.|..|||+--|--+=-|-||=....=-- 
T Consensus        82 G~~~~~~~~~~~V~LPlgATEDRVvG~LDi~~al~~G~~~FqPGLLA~AhrGiLYiDEVNLLdDhlVD~lLDaaA~G~n-  160 (688)
T TIGR02442        82 GTLPSEQRPVPFVNLPLGATEDRVVGSLDIERALKEGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVN-  160 (688)
T ss_pred             CCCCCCCCCCEEEECCCCCCHHHHCCHHHHHHHHHHCHHHHCCCCHHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCCE-
T ss_conf             7753135873588658775233221305489998718566078861754687167852001441477899998764800-


Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH---CCCCCCCHHHHCCCCCCC
Q ss_conf             11466506754330356754333210245400135678764310134562566445653---167642001100011100
Q 537021.9.peg.4  137 VKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIAR---ASDGSARDGLSLLDQAIA  213 (369)
Q Consensus       137 ~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~---~s~GslR~Al~lLeq~i~  213 (369)
                                                              .++-||+++.-.+.-.++=   ==+|.||.=  |||+--.
T Consensus       161 ----------------------------------------~VEREG~S~~Hparf~L~GTMNPEEG~LRPQ--LLDRFGL  198 (688)
T TIGR02442       161 ----------------------------------------RVEREGLSVSHPARFVLIGTMNPEEGDLRPQ--LLDRFGL  198 (688)
T ss_pred             ----------------------------------------EEEECCCCHHCHHHHHHHCCCCCCHHHHCHH--HHHHHHC
T ss_conf             ----------------------------------------6763574300114553220378522110223--2424401


Q ss_pred             HHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH----HHHHHHHHHCCCCC
Q ss_conf             00001210322000135677777888876301363346788765430476213578777534----89999997457412
Q 537021.9.peg.4  214 RCNDKIVTSSVRLMLALADRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEF----THLVTRIKYIPEMA  289 (369)
Q Consensus       214 ~~~~~i~~e~v~~llg~~~~~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~----~rdll~~k~~~~~~  289 (369)
                                               .++.-...|...-++.++.-.....||..|...|..-    -..++..+.   ..
T Consensus       199 -------------------------~V~v~~~~d~~~R~Ev~~Rrl~~d~dP~~F~~~~~~~~~~L~~~I~~AR~---lL  250 (688)
T TIGR02442       199 -------------------------CVDVAASRDPEERVEVIRRRLAFDADPEAFAARWAAEQEELRERIAAARS---LL  250 (688)
T ss_pred             -------------------------EEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH---HC
T ss_conf             -------------------------15502435866899999999754026778899999999999999999997---54


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHH
Q ss_conf             23449988999999998629989999--9999999999983027--8889999999999953
Q 537021.9.peg.4  290 DTLLYSEAENARALQYSKEVSITFLS--RFWQMILKGISEIEGF--SRPMEAVEMVLIRLAH  347 (369)
Q Consensus       290 ~~~~~~~~e~~~i~~~a~~i~~~~L~--~~lq~l~~a~~~Lk~n--~np~L~lE~lLlkL~~  347 (369)
                      ..+.+++....++.+++..++....-  -++--...|.-.+.+-  ++..-+-+..-|=|.|
T Consensus       251 p~V~l~d~~~~~I~~lc~~~~V~GhRAdi~~~raArAlAAl~GR~~V~~eDv~~Aa~LvL~H  312 (688)
T TIGR02442       251 PSVRLSDSLLRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAELVLPH  312 (688)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHH
T ss_conf             77658889999999999972888525999999999999877288535377899999875232


No 185
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.85  E-value=3.7e-05  Score=58.14  Aligned_cols=41  Identities=29%  Similarity=0.391  Sum_probs=34.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHH
Q ss_conf             92848999999999982876706201078798888999999999
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARS   44 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~   44 (369)
                      |+||++++..|.-+..-|   |.+||.||||+|||.+|..+..-
T Consensus       181 V~GQ~~AKrAleiAAAGg---HnLl~~GpPGtGKTmla~Rl~~l  221 (490)
T COG0606         181 VKGQEQAKRALEIAAAGG---HNLLLVGPPGTGKTMLASRLPGL  221 (490)
T ss_pred             HCCCHHHHHHHHHHHHCC---CCEEEECCCCCCHHHHHHHHHCC
T ss_conf             438499999999998438---86787569988656764231025


No 186
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938    The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=97.83  E-value=0.00024  Score=52.21  Aligned_cols=175  Identities=21%  Similarity=0.241  Sum_probs=108.7

Q ss_pred             CCHHHHHHHHHHHHHCC------------CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             28489999999999828------------767062010787988889999999996146877788665878999779999
Q 537021.9.peg.4    2 IGQKPMIKTLTNAFKSG------------RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAI   69 (369)
Q Consensus         2 iGq~~~~~~l~~~~~~~------------~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i   69 (369)
                      =|-+.+.+.|+.+++--            +-|...|++||||+|||.+|++.|..-    .. +.               
T Consensus       544 GGlee~kq~lreaveWPlk~~~~f~k~G~~PP~Gvll~GPPGtGktllakava~es----~a-nf---------------  603 (980)
T TIGR01243       544 GGLEEVKQELREAVEWPLKAPEVFEKLGIRPPKGVLLFGPPGTGKTLLAKAVATES----GA-NF---------------  603 (980)
T ss_pred             CCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCC----CC-CE---------------
T ss_conf             66789999998775234440589986078899734874689861688888774014----56-46---------------


Q ss_pred             HCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC-------------CCHHHHHHHHHHH--
Q ss_conf             779877822--24533223345556655544565420465237751156648-------------0016789999972--
Q 537021.9.peg.4   70 IRGNHVDVV--ELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS-------------TAAFNGLLKTLEE--  132 (369)
Q Consensus        70 ~~~~~~d~~--e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~-------------~~a~NaLLK~lEE--  132 (369)
                      -+-.-|.++  |+ |.   +=..||++.+.+++.    -.-|+++||.|.+.             -.--|.||--|.-  
T Consensus       604 i~v~GPe~lskWv-Ge---se~~ir~if~~arq~----aP~~~f~deidaiaP~rG~~~~~~~vtd~~~nqll~e~dG~~  675 (980)
T TIGR01243       604 IAVRGPEILSKWV-GE---SEKAIREIFRKARQA----APAIIFFDEIDAIAPARGASLDEKGVTDRIVNQLLTELDGLE  675 (980)
T ss_pred             EEECCCHHHHHHH-CH---HHHHHHHHHHHHHHC----CCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             7740731223440-32---479999999986412----873787302111054124421001026899999998640443


Q ss_pred             CCCCCCEEEEECCCCCCCHHHHH--HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHCCCCCCCHHH
Q ss_conf             12211146650675433035675--433321024540013567876431013456256-64456531676420011
Q 537021.9.peg.4  133 PPPHVKFIFATTEIRKIPITVLS--RCQRFDLHRISIGDLIELFTKILQEESIEFDPE-AVAMIARASDGSARDGL  205 (369)
Q Consensus       133 Pp~~~~fil~t~~~~~ll~TI~S--Rcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~-~l~~ia~~s~GslR~Al  205 (369)
                      ++.+++.|-+|+.|+-+=|++.-  |.-++-+-|.|+++...-+-+|-.+ .+.+.++ .+.-+|+..+|--+.-+
T Consensus       676 ~~~~vvvi~atnrPdi~dPallrPGr~dr~i~vP~Pd~~ar~~ifk~ht~-~~~l~~dv~l~~la~~teGytGadi  750 (980)
T TIGR01243       676 ELSDVVVIAATNRPDILDPALLRPGRLDRLILVPAPDEEARLEIFKIHTR-SMPLAEDVDLEELAKKTEGYTGADI  750 (980)
T ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHC-CCCCCCCCCHHHHHHHHCCCCCHHH
T ss_conf             43665898615887423610048874121686059855676767655311-1353013438999865168763229


No 187
>pfam00931 NB-ARC NB-ARC domain.
Probab=97.83  E-value=5e-05  Score=57.18  Aligned_cols=184  Identities=17%  Similarity=0.166  Sum_probs=86.4

Q ss_pred             HHHHHHHHHH--CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCH---HHHHHHCCCCCCCCCC
Q ss_conf             9999999998--2876706201078798888999999999614687778866-58789997---7999977987782224
Q 537021.9.peg.4    7 MIKTLTNAFK--SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPT-VEFEGFGE---HCQAIIRGNHVDVVEL   80 (369)
Q Consensus         7 ~~~~l~~~~~--~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~-~~~c~~c~---~c~~i~~~~~~d~~e~   80 (369)
                      -++.|.+.+.  .+.+.- .=.+|+.|+||||+|+.+-........ ++.-+ +.....+.   -.+.|...-     ..
T Consensus         4 ~~~~i~~~L~~~~~~~~v-I~I~G~gGiGKTtLA~~v~~~~~i~~~-F~~~~wv~vs~~~~~~~i~~~i~~~l-----~~   76 (285)
T pfam00931         4 MIEALIEKLLEMSENLGV-VGIVGMGGVGKTTLAKQIYNDDSVGGH-FDSVAWVVVSKTYTEFRLQKDILQEL-----GL   76 (285)
T ss_pred             HHHHHHHHHHCCCCCCEE-EEEECCCCCCHHHHHHHHHCCHHHHHC-CCEEEEEEECCCCCHHHHHHHHHHHH-----CC
T ss_conf             999999998648989539-998899956399999999716556505-98389999797666899999999985-----66


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             53322334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4   81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF  160 (369)
Q Consensus        81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~  160 (369)
                      .. +.....+..++...+.-. ..+++=.+|+|++..  ..-++.+...+-.-..+.. |++||.-..+..+....+..+
T Consensus        77 ~~-~~~~~~~~~~l~~~l~~~-L~~kr~LiVLDDVw~--~~~~~~l~~~~~~~~~gSr-IIvTTR~~~V~~~~~~~~~~~  151 (285)
T pfam00931        77 DD-SDWVEKNESELAVKIKEA-LLRKRFLLVLDDVWE--KNDWDKIGVPFPDGENGSR-VIVTTRSESVAGRMGGTSKPH  151 (285)
T ss_pred             CC-CCCCCCCHHHHHHHHHHH-HCCCCEEEEECCCCC--HHHHHHHHCCCCCCCCCCE-EEEECCCHHHHHHCCCCCCEE
T ss_conf             65-455557899999999999-727966999638887--8999997345757899827-998557589998737888347


Q ss_pred             HCCCCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHCCCCCCC
Q ss_conf             10245400135678764310134562---5664456531676420
Q 537021.9.peg.4  161 DLHRISIGDLIELFTKILQEESIEFD---PEAVAMIARASDGSAR  202 (369)
Q Consensus       161 ~f~~l~~~~i~~~L~~i~~~E~i~~d---~~~l~~ia~~s~GslR  202 (369)
                      ++.+++.++-.+.+.+.+-......+   ++...-|++.++|.+-
T Consensus       152 ~l~~L~~~es~~Lf~~~a~~~~~~~~~~l~~~~~~Iv~~C~GlPL  196 (285)
T pfam00931       152 EVESLEPEESWELFSNKVFEKELPPCPELEEVAKEIVEKCKGLPL  196 (285)
T ss_pred             ECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHH
T ss_conf             616898799999999984689899976799999999998589949


No 188
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.80  E-value=0.003  Score=44.08  Aligned_cols=174  Identities=13%  Similarity=0.251  Sum_probs=112.1

Q ss_pred             HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHH---------HCCCCCCCCCCCC-----------CCCCCCHHHHH
Q ss_conf             999999982876706201078798888999999999---------6146877788665-----------87899977999
Q 537021.9.peg.4    9 KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARS---------LNYKTAHIDVPTV-----------EFEGFGEHCQA   68 (369)
Q Consensus         9 ~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~---------l~c~~~~~~~~~~-----------~~c~~c~~c~~   68 (369)
                      ..|.+-+.++.=.-..+|+-|.|.||||++-.|+..         +.|...+.+ |..           ---+.|++|..
T Consensus        25 ~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dnd-p~rF~~yLi~al~~~~p~~~~~a~~  103 (894)
T COG2909          25 PRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDND-PARFLSYLIAALQQATPTLGDEAQT  103 (894)
T ss_pred             HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCC-HHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf             899999860778438998678877588999999986476554357645776678-8999999999998747232478999


Q ss_pred             HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HHHHCCCCCEEEEECHHHCCCCHHH-HHHHHHHHCCCCCCEEEEECC
Q ss_conf             9779877822245332233455566555445--6542046523775115664800167-899999721221114665067
Q 537021.9.peg.4   69 IIRGNHVDVVELDAASHTSIDDVREIIDQIY--YKPISARFRVYIMDEVQMLSTAAFN-GLLKTLEEPPPHVKFIFATTE  145 (369)
Q Consensus        69 i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~--~~p~~~~~kv~iid~a~~m~~~a~N-aLLK~lEEPp~~~~fil~t~~  145 (369)
                      +...             ++-+.+..+++.+-  +.++.|+ =..++||-|..+..+-+ +|...++--|+|+..|++|.+
T Consensus       104 l~q~-------------~~~~~l~~l~~~L~~Ela~~~~p-l~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~  169 (894)
T COG2909         104 LLQK-------------HQYVSLESLLSSLLNELASYEGP-LYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRS  169 (894)
T ss_pred             HHHH-------------CCCCCHHHHHHHHHHHHHHHCCC-EEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf             9873-------------35565999999999998751496-499953532257602899999999719987499997656


Q ss_pred             -CCCCCHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCC
Q ss_conf             -543303567543332102----4540013567876431013456256644565316764
Q 537021.9.peg.4  146 -IRKIPITVLSRCQRFDLH----RISIGDLIELFTKILQEESIEFDPEAVAMIARASDGS  200 (369)
Q Consensus       146 -~~~ll~TI~SRcq~~~f~----~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~Gs  200 (369)
                       |.--+.+.|=|=+.+.+.    +++.+|..+++..   .-+..+|...++.+-..++|=
T Consensus       170 rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~---~~~l~Ld~~~~~~L~~~teGW  226 (894)
T COG2909         170 RPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLND---RGSLPLDAADLKALYDRTEGW  226 (894)
T ss_pred             CCCCCCCCEEEHHHHHHCCHHHHCCCHHHHHHHHHH---CCCCCCCHHHHHHHHHHCCCH
T ss_conf             888764420112167751858645785999999997---189977858898788502439


No 189
>KOG0745 consensus
Probab=97.76  E-value=3.2e-05  Score=58.62  Aligned_cols=88  Identities=24%  Similarity=0.361  Sum_probs=54.5

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHH
Q ss_conf             2010787988889999999996146877788665878999779999779877822245332233455-566555445654
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDD-VREIIDQIYYKP  102 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~-ir~l~~~~~~~p  102 (369)
                      .|+-||.|+|||.+|..+|+.||-.           ..-|+.-..-.+|.-=+          .||. |..|...+.+--
T Consensus       229 vLllGPtGsGKTllaqTLAr~ldVP-----------faIcDcTtLTQAGYVGe----------DVEsvi~KLl~~A~~nV  287 (564)
T KOG0745         229 VLLLGPTGSGKTLLAQTLARVLDVP-----------FAICDCTTLTQAGYVGE----------DVESVIQKLLQEAEYNV  287 (564)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCC-----------EEEECCCCHHHCCCCCC----------CHHHHHHHHHHHCCCCH
T ss_conf             7997788876438999999970887-----------68732552200553454----------29999999999725789


Q ss_pred             HCCCCCEEEEECHHHCC--------------CCHHHHHHHHHHH
Q ss_conf             20465237751156648--------------0016789999972
Q 537021.9.peg.4  103 ISARFRVYIMDEVQMLS--------------TAAFNGLLKTLEE  132 (369)
Q Consensus       103 ~~~~~kv~iid~a~~m~--------------~~a~NaLLK~lEE  132 (369)
                      -.+-.-|+++||+|+++              +.-|.||||.||-
T Consensus       288 ekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEG  331 (564)
T KOG0745         288 EKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEG  331 (564)
T ss_pred             HHHHCCEEEEEHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf             98826738876012441367654544456626699999998526


No 190
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.68  E-value=0.00091  Score=47.93  Aligned_cols=112  Identities=21%  Similarity=0.248  Sum_probs=56.5

Q ss_pred             HHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             99828767062010787988889999999996146877788665878999779999779877822245332233455566
Q 537021.9.peg.4   14 AFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVRE   93 (369)
Q Consensus        14 ~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~   93 (369)
                      .+.+=+.-.-.++.||||+|||-+|+.||.+|..+... +..+.-+...--+-..+..|--|+-...  ...-|  -..+
T Consensus       187 ~~~sLktKknvIL~G~pGtGKT~lAk~lA~~l~g~~~~-~rv~~VqfhpsysYEDfi~Gyrp~~~gf--~~~~G--~f~~  261 (459)
T PRK11331        187 ILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAP-QRVNMVQFHQSYSYEDFIQGYRPNGVGF--RRKDG--IFYN  261 (459)
T ss_pred             HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCC-CCEEEEEECCCCCHHHHHCCCCCCCCCC--EECCC--HHHH
T ss_conf             99985458827965899988789999999997078877-8468998358866178764605688861--32683--6999


Q ss_pred             HHHHHHHHHHCCCCCEEEEECHHHCCCCH-HHHHHHHHHH
Q ss_conf             55544565420465237751156648001-6789999972
Q 537021.9.peg.4   94 IIDQIYYKPISARFRVYIMDEVQMLSTAA-FNGLLKTLEE  132 (369)
Q Consensus        94 l~~~~~~~p~~~~~kv~iid~a~~m~~~a-~NaLLK~lEE  132 (369)
                      +++.+.--|.  ..=++||||..+=|.+- +--||-.||.
T Consensus       262 ~~~~A~~~p~--~~y~~iideinr~~~~~~fgel~~liE~  299 (459)
T PRK11331        262 FCQQAKEQPE--KKYVFIIDEINRANLSKVFGEVMMLMEH  299 (459)
T ss_pred             HHHHHHHCCC--CCEEEEEEHHHCCCHHHHHHHHHHHHHH
T ss_conf             9999984989--8769998432033889999999999641


No 191
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I; InterPro: IPR011775    This entry represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll . This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. It is also found in certain archaea not known to make chlorins.; GO: 0005524 ATP binding, 0016851 magnesium chelatase activity, 0006779 porphyrin biosynthetic process.
Probab=97.67  E-value=8.5e-05  Score=55.52  Aligned_cols=164  Identities=21%  Similarity=0.321  Sum_probs=101.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHH-------CCCCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf             928489999999999828767062010787988889999999996-------1468777886658789997799997798
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSL-------NYKTAHIDVPTVEFEGFGEHCQAIIRGN   73 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l-------~c~~~~~~~~~~~~c~~c~~c~~i~~~~   73 (369)
                      ||||++.+..|-=.+-.-+|+- -|.-|.+||||+|+.|+||.-|       +|.-+....   .+-+.|+.|+...+.+
T Consensus         6 IVGQ~emKlAllL~vidP~IGG-VmvmGdRGTgKSTavRALAalLP~IkaVagcP~n~~Ps---~~~~~c~e~r~~~~~~   81 (340)
T TIGR02030         6 IVGQEEMKLALLLTVIDPKIGG-VMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSAPS---DREELCEEVRILEDSS   81 (340)
T ss_pred             EECHHHHHHHHHHEEECCCCCE-EEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCC---CCCCCCHHHHHHHHCC
T ss_conf             6416888777752000688562-88867789835689999997499407861768788888---8613576777753126


Q ss_pred             ----CCCCCCC-----C---CCCC----CCHHHHHHHHHHH-HHHHH---CCCCCEEEEECHHHCCCCHHHHHH------
Q ss_conf             ----7782224-----5---3322----3345556655544-56542---046523775115664800167899------
Q 537021.9.peg.4   74 ----HVDVVEL-----D---AASH----TSIDDVREIIDQI-YYKPI---SARFRVYIMDEVQMLSTAAFNGLL------  127 (369)
Q Consensus        74 ----~~d~~e~-----~---~~s~----~~id~ir~l~~~~-~~~p~---~~~~kv~iid~a~~m~~~a~NaLL------  127 (369)
                          .|-+++.     |   |+..    ..+|=-|.|-+-. .|.|-   .+.+=+..|||+--|--.=-.-||      
T Consensus        82 Gkt~~~~~i~~pvpvVDLPLGaTEDRVcGtlDIerALt~GvkAFePGLLArANRG~LYiDEVNLLeDHlVDvLLDvAasG  161 (340)
T TIGR02030        82 GKTKKLAVIEKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGYLYIDEVNLLEDHLVDVLLDVAASG  161 (340)
T ss_pred             CCCCCCEEEECCCCEEECCCCCCCCCEECHHHHHHHHHCCCCCCCCCCHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCC
T ss_conf             86567515515765364798862131344024767750472103663046661784255210001245665665220478


Q ss_pred             -HHHHHCCCC------CCEEEEE-CCCC--CCCHHHHHHH-HHHHCCCCCCHHH
Q ss_conf             -999721221------1146650-6754--3303567543-3321024540013
Q 537021.9.peg.4  128 -KTLEEPPPH------VKFIFAT-TEIR--KIPITVLSRC-QRFDLHRISIGDL  170 (369)
Q Consensus       128 -K~lEEPp~~------~~fil~t-~~~~--~ll~TI~SRc-q~~~f~~l~~~~i  170 (369)
                       .++|.  ++      ..|+|+. =||+  .|=|=+.=|- .+...+.+.+-+.
T Consensus       162 ~NvVER--EG~SiRHPARFVLVGSGNPEEGeLRPQLLDRFGlhaeirt~rdve~  213 (340)
T TIGR02030       162 VNVVER--EGVSIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVEE  213 (340)
T ss_pred             CEEEEE--CCEEEECCCCEEEECCCCCCCCCCCCHHHHHCCCEEEEECCCCHHH
T ss_conf             305863--5602303763587157888766667401524465278722677222


No 192
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462    The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=97.63  E-value=0.00011  Score=54.65  Aligned_cols=114  Identities=27%  Similarity=0.332  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHC----CCCCCCCCCCCCCCCCCHHHHHHHCCCCCC-CCCCC
Q ss_conf             9999999998287670620107879888899999999961----468777886658789997799997798778-22245
Q 537021.9.peg.4    7 MIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLN----YKTAHIDVPTVEFEGFGEHCQAIIRGNHVD-VVELD   81 (369)
Q Consensus         7 ~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~----c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d-~~e~~   81 (369)
                      +...-.+.++.|+-=|   |.||.|+||||+|+.+|+.+.    .-+++....+.+.-|.-..   ....+-.| ++.  
T Consensus        10 v~~R~l~yL~~G~PvH---l~GPaG~GKT~LA~hvA~~r~RPV~l~~Gd~eL~~~DLvG~~~g---~~~~kv~Dqfih--   81 (265)
T TIGR02640        10 VTSRALRYLKSGYPVH---LRGPAGTGKTTLAMHVARKRDRPVVLINGDAELTTSDLVGSYAG---YTRKKVVDQFIH--   81 (265)
T ss_pred             HHHHHHHHHCCCCCEE---EECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC---CEEEEEEECCEE--
T ss_conf             9998766322788667---44788855689999999736896899865823265442315467---522223201211--


Q ss_pred             CCCCCC-HHHHHH-HHH-HHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHH
Q ss_conf             332233-455566-555-445654204652377511566480016789999972
Q 537021.9.peg.4   82 AASHTS-IDDVRE-IID-QIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEE  132 (369)
Q Consensus        82 ~~s~~~-id~ir~-l~~-~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEE  132 (369)
                        |-.| -|++++ ..+ .+-.+ .+-+| -.|-||.-+=.+.+-|-||=.+||
T Consensus        82 --nV~K~~d~~~~~W~D~rLt~A-v~eG~-TLVYdEF~RskP~~nNVLLSvlEE  131 (265)
T TIGR02640        82 --NVVKLEDIVRQNWVDNRLTLA-VREGF-TLVYDEFTRSKPETNNVLLSVLEE  131 (265)
T ss_pred             --EEECCCCCCCCCCCCCHHHHH-HHCCC-EEEECCCCCCCCHHHHHHHHHHHH
T ss_conf             --134251220026678357899-75697-276647578862045656755552


No 193
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=97.62  E-value=0.00028  Score=51.70  Aligned_cols=137  Identities=15%  Similarity=0.100  Sum_probs=65.6

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCC-CCCCCCCCCCCCCCCHHHHHHHHH-HH
Q ss_conf             7062010787988889999999996146877788665878999779999779-877822245332233455566555-44
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRG-NHVDVVELDAASHTSIDDVREIID-QI   98 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~-~~~d~~e~~~~s~~~id~ir~l~~-~~   98 (369)
                      |+-.+|.||.|+||||++--+|..+.-...   ....-.|.+-.. -.++.- .+.+...+.--.....++..++.. -+
T Consensus         1 P~vi~lvGptGvGKTTTiaKLAa~~~~~~~---~V~lit~Dt~R~-gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l   76 (196)
T pfam00448         1 PNVILLVGLQGSGKTTTIAKLAAYLKKQGK---KVLLVAADTFRA-AAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAV   76 (196)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCC---EEEEEECCCCCH-HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
T ss_conf             969999899999889999999999997799---289997587768-8999999999863981781487778789999999


Q ss_pred             HHHHHCCCCCEEEEECHHHCCCCHH--HHHHHHHHH-CCCCCCEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf             5654204652377511566480016--789999972-122111466506754330356754333210
Q 537021.9.peg.4   99 YYKPISARFRVYIMDEVQMLSTAAF--NGLLKTLEE-PPPHVKFIFATTEIRKIPITVLSRCQRFDL  162 (369)
Q Consensus        99 ~~~p~~~~~kv~iid~a~~m~~~a~--NaLLK~lEE-Pp~~~~fil~t~~~~~ll~TI~SRcq~~~f  162 (369)
                      ... ...++.+++||-|-+...+..  .-|-+..+. +|..++++|.++.-..-+..+..+...+.+
T Consensus        77 ~~~-~~~~~D~IlIDTaGr~~~d~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~  142 (196)
T pfam00448        77 EKA-KAENYDVVLVDTAGRLQNDKNLMDELKKIKRVIAPDEVLLVLDATTGQNALNQAKAFNEAVGI  142 (196)
T ss_pred             HHH-HHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf             998-846899999989998747677899999998522873028998567782137899987600477


No 194
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=97.59  E-value=0.0067  Score=41.50  Aligned_cols=26  Identities=27%  Similarity=0.337  Sum_probs=19.8

Q ss_pred             CCCCCEEEHHCCCCCCCHHHHHHHHHH
Q ss_conf             287670620107879888899999999
Q 537021.9.peg.4   17 SGRIAQSYMLSGTRGIGKTTTARIIAR   43 (369)
Q Consensus        17 ~~~~~ha~lf~G~~G~GK~~~a~~~A~   43 (369)
                      .+.++|. +..||.|.|||++.-.++.
T Consensus       423 ~~d~GHt-~I~G~TGsGKTtll~fL~a  448 (789)
T PRK13853        423 EHDVGMT-AIFGPIGRGKTTLMTFILA  448 (789)
T ss_pred             CCCCCCE-EEECCCCCCHHHHHHHHHH
T ss_conf             7887744-8878999988999999999


No 195
>PRK12377 putative replication protein; Provisional
Probab=97.58  E-value=0.00053  Score=49.65  Aligned_cols=98  Identities=15%  Similarity=0.210  Sum_probs=57.0

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH---
Q ss_conf             70620107879888899999999961468777886658789997799997798778222453322334555665554---
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQ---   97 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~---   97 (369)
                      +|.++|+||||+|||-+|-+++..+ |..+...                        +.+..+.  =++++++-.++   
T Consensus       101 ~~NlIf~G~pGtGKTHLA~AIg~~a-~~~G~sV------------------------lF~t~~d--Lv~~L~~a~~~g~~  153 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRL-LAKGRSV------------------------IVVTVPD--VMSRLHESYDNGQS  153 (248)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH-HHCCCEE------------------------EEEEHHH--HHHHHHHHHHCCCC
T ss_conf             8608998999987889999999999-9879969------------------------9988999--99999999984850


Q ss_pred             -HHHHHHCCCCCEEEEECH--HHCCCCHHHHHHHHHHH-CCCCCCEEEEECC
Q ss_conf             -456542046523775115--66480016789999972-1221114665067
Q 537021.9.peg.4   98 -IYYKPISARFRVYIMDEV--QMLSTAAFNGLLKTLEE-PPPHVKFIFATTE  145 (369)
Q Consensus        98 -~~~~p~~~~~kv~iid~a--~~m~~~a~NaLLK~lEE-Pp~~~~fil~t~~  145 (369)
                       -.+.-.-.++.+.||||.  ..++..+++-|-..+.+ +-...-.|++|+-
T Consensus       154 ~~k~l~~l~~~dLLIIDElG~~~~s~~~~~llfqlI~~Ry~~~ks~IiTTNL  205 (248)
T PRK12377        154 GEKFLQELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL  205 (248)
T ss_pred             HHHHHHHHHCCCEEEEHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf             9999999733898986000578898679999999999998557986897589


No 196
>PRK09183 transposase/IS protein; Provisional
Probab=97.57  E-value=0.00017  Score=53.21  Aligned_cols=99  Identities=17%  Similarity=0.149  Sum_probs=60.5

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-
Q ss_conf             7062010787988889999999996146877788665878999779999779877822245332233455566555445-
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIY-   99 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~-   99 (369)
                      ++..+|.||+|+|||-+|-+++... |..+.....+                +-+|+          +++.+.-...-+ 
T Consensus       101 ~~Nvil~G~~GtGKThLA~Alg~~A-~~~G~~v~f~----------------~~~~L----------~~~L~~a~~~~~~  153 (258)
T PRK09183        101 NENIVLLGPSGVGKTHLAIALGYEA-VRAGIKVRFT----------------TAADL----------LLQLSTAQRQGRY  153 (258)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHH-HHCCCEEEEE----------------EHHHH----------HHHHHHHHHCCCH
T ss_conf             8867998999986899999999999-9879939997----------------89999----------9999999876859


Q ss_pred             ---HHHHCCCCCEEEEECHH--HCCCCHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf             ---65420465237751156--648001678999997212211146650675
Q 537021.9.peg.4  100 ---YKPISARFRVYIMDEVQ--MLSTAAFNGLLKTLEEPPPHVKFIFATTEI  146 (369)
Q Consensus       100 ---~~p~~~~~kv~iid~a~--~m~~~a~NaLLK~lEEPp~~~~fil~t~~~  146 (369)
                         ++-.-.++.+.||||.-  .++...++-|..++++=-+..-.|++|+-|
T Consensus       154 ~~~l~r~l~~~dLLIiDdlG~~~~~~~~~~~lfeli~~Rye~~S~IiTSn~~  205 (258)
T PRK09183        154 KTTLQRGVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGAMILTSNLP  205 (258)
T ss_pred             HHHHHHHHCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             9999987434651443133154688889999999999985767789988999


No 197
>KOG1808 consensus
Probab=97.57  E-value=0.00016  Score=53.42  Aligned_cols=149  Identities=21%  Similarity=0.317  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC--
Q ss_conf             899999999998287670620107879888899999999961468777886658789997799997798778222453--
Q 537021.9.peg.4    5 KPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDA--   82 (369)
Q Consensus         5 ~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~--   82 (369)
                      +.....+.+++..|+.|  .||-||.|+|||+++..+|++.                 |..|.+|..-.|.|+.|.=+  
T Consensus       426 q~~la~~~~a~~~~~~p--illqG~tssGKtsii~~la~~~-----------------g~~~vrinnhehtd~qeyig~y  486 (1856)
T KOG1808         426 QKNLADLARAISSGKFP--ILLQGPTSSGKTSIIKELARAT-----------------GKNIVRINNHEHTDLQEYIGTY  486 (1856)
T ss_pred             HHHHHHHHHHHHCCCCC--EEEECCCCCCCHHHHHHHHHHH-----------------CCCCEEHHCCCCCHHHHHHHHH
T ss_conf             98899999999658998--6775476768115999999985-----------------4673420024633399998665


Q ss_pred             -CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHH------CCCCC------CE-EEEECCCC-
Q ss_conf             -32233455566555445654204652377511566480016789999972------12211------14-66506754-
Q 537021.9.peg.4   83 -ASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEE------PPPHV------KF-IFATTEIR-  147 (369)
Q Consensus        83 -~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEE------Pp~~~------~f-il~t~~~~-  147 (369)
                       ++.++--..|+...  .-....|  ..+++|+.+.-+.+-.+||.++++.      |-...      -| ++.|.+|. 
T Consensus       487 ~~~~~g~l~freg~L--V~Alr~G--~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~  562 (1856)
T KOG1808         487 VADDNGDLVFREGVL--VQALRNG--DWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPG  562 (1856)
T ss_pred             EECCCCCEEEEHHHH--HHHHHHC--CEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHCCCCC
T ss_conf             007889725534689--9998708--779840201240678999984045404125634432322470123454307766


Q ss_pred             ------CCCHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             ------33035675433321024540013567876
Q 537021.9.peg.4  148 ------KIPITVLSRCQRFDLHRISIGDLIELFTK  176 (369)
Q Consensus       148 ------~ll~TI~SRcq~~~f~~l~~~~i~~~L~~  176 (369)
                            -+.-.+++|-+-++|.-++.+++..-+..
T Consensus       563 ~y~grk~lsRa~~~rf~e~~f~~~~e~e~~~i~~~  597 (1856)
T KOG1808         563 TYGGRKILSRALRNRFIELHFDDIGEEELEEILEH  597 (1856)
T ss_pred             CCCHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHCC
T ss_conf             65315665531444002353552571455556402


No 198
>KOG0730 consensus
Probab=97.55  E-value=0.00082  Score=48.24  Aligned_cols=169  Identities=18%  Similarity=0.285  Sum_probs=100.5

Q ss_pred             CHHHHHHHHHHHHH-----------CC-CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             84899999999998-----------28-7670620107879888899999999961468777886658789997799997
Q 537021.9.peg.4    3 GQKPMIKTLTNAFK-----------SG-RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAII   70 (369)
Q Consensus         3 Gq~~~~~~l~~~~~-----------~~-~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~   70 (369)
                      |++.++..|+.+|.           -| .-|...||+||||||||++|+++|..--|.--...         ++.-... 
T Consensus       438 GlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvk---------gpEL~sk-  507 (693)
T KOG0730         438 GLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVK---------GPELFSK-  507 (693)
T ss_pred             CHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEECC---------CHHHHHH-
T ss_conf             789999999999861665659998725788754777789986247899998646358726415---------7899877-


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCH-----------HHHHHHHHHHCC-CCCC
Q ss_conf             7987782224533223345556655544565420465237751156648001-----------678999997212-2111
Q 537021.9.peg.4   71 RGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAA-----------FNGLLKTLEEPP-PHVK  138 (369)
Q Consensus        71 ~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a-----------~NaLLK~lEEPp-~~~~  138 (369)
                              ++ |.   +=.-+|++-..++..+-    -|+++||+|.+..+=           -|.||+-|.=-- ...+
T Consensus       508 --------~v-Ge---SEr~ir~iF~kAR~~aP----~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V  571 (693)
T KOG0730         508 --------YV-GE---SERAIREVFRKARQVAP----CIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNV  571 (693)
T ss_pred             --------HC-CC---HHHHHHHHHHHHHHCCC----EEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCE
T ss_conf             --------51-82---58999999999862698----3774466666663047875514899999999870041014708


Q ss_pred             EEEE-ECCCCCCCHHHHH--HH-HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHCCCC
Q ss_conf             4665-0675433035675--43-3321024540013567876431013456256-64456531676
Q 537021.9.peg.4  139 FIFA-TTEIRKIPITVLS--RC-QRFDLHRISIGDLIELFTKILQEESIEFDPE-AVAMIARASDG  199 (369)
Q Consensus       139 fil~-t~~~~~ll~TI~S--Rc-q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~-~l~~ia~~s~G  199 (369)
                      ||+. ||-|+.|=+.+..  |- +++++++++.+-=.+.|+.-  .++++++++ .++.+|...+|
T Consensus       572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~--~kkmp~~~~vdl~~La~~T~g  635 (693)
T KOG0730         572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQC--AKKMPFSEDVDLEELAQATEG  635 (693)
T ss_pred             EEEECCCCHHHCCHHHCCCCCCCEEEEECCCCHHHHHHHHHHH--HHCCCCCCCCCHHHHHHHHCC
T ss_conf             9995058810126977598653305751583478899999999--733999865569999998546


No 199
>PRK06526 transposase; Provisional
Probab=97.53  E-value=0.00031  Score=51.36  Aligned_cols=101  Identities=21%  Similarity=0.235  Sum_probs=60.4

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC-CCCCCCCCCHHHHHHHHHHHH
Q ss_conf             7062010787988889999999996146877788665878999779999779877822-245332233455566555445
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVV-ELDAASHTSIDDVREIIDQIY   99 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~-e~~~~s~~~id~ir~l~~~~~   99 (369)
                      ++..+|.||+|+|||-+|-+++... |..+....     +-++.           +++ ++..+...     ..+...  
T Consensus        98 ~~Nvil~G~~GtGKThLA~Alg~~A-~~~G~~v~-----f~~~~-----------~L~~~L~~a~~~-----g~~~~~--  153 (254)
T PRK06526         98 KENVVFLGPPGTGKTHLAIGLGIRA-CQAGHRVL-----FATAA-----------QWVARLAAAHHA-----GRLQDE--  153 (254)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHH-HHCCCCEE-----EEEHH-----------HHHHHHHHHHHC-----CCHHHH--
T ss_conf             8878998999986899999999999-98699679-----98779-----------999999998855-----809999--


Q ss_pred             HHHHCCCCCEEEEECHH--HCCCCHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf             65420465237751156--648001678999997212211146650675
Q 537021.9.peg.4  100 YKPISARFRVYIMDEVQ--MLSTAAFNGLLKTLEEPPPHVKFIFATTEI  146 (369)
Q Consensus       100 ~~p~~~~~kv~iid~a~--~m~~~a~NaLLK~lEEPp~~~~fil~t~~~  146 (369)
                      ++ .-.++.+.||||.-  .++...++-|...+++=-++.-.|++++-|
T Consensus       154 ~~-~l~~~dLLIiDe~g~~~~~~~~a~~lf~li~~Rye~~S~IiTSn~~  201 (254)
T PRK06526        154 LV-KLGRIPLLIVDEVGYIPFEAEAANLFFQLVSSRYERASLIVTSNKP  201 (254)
T ss_pred             HH-HHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             99-8513687765021364478899999999999997458867665898


No 200
>PRK08116 hypothetical protein; Validated
Probab=97.53  E-value=0.00088  Score=48.03  Aligned_cols=114  Identities=19%  Similarity=0.212  Sum_probs=59.2

Q ss_pred             HHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC-CCCC-CCCC
Q ss_conf             9999998287670620107879888899999999961468777886658789997799997798778222-4533-2233
Q 537021.9.peg.4   10 TLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVE-LDAA-SHTS   87 (369)
Q Consensus        10 ~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e-~~~~-s~~~   87 (369)
                      ...+.-..+.-+..++|+||+|+|||-+|-++|..|. +.+..   +.             --+.|+++. +-.+ ++.+
T Consensus        97 Y~~~f~~~~~~~~GLll~G~~GtGKThLa~aIa~~l~-~~g~~---V~-------------~~~~~~ll~~lk~~~~~~~  159 (262)
T PRK08116         97 YVKKFEEMKKESVGLLLWGSPGNGKTYLAAAIANELI-EKGVP---VV-------------FVNVPELLNRIKSTYNSEG  159 (262)
T ss_pred             HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHH-HCCCE---EE-------------EEEHHHHHHHHHHHHHCCC
T ss_conf             9998987364686189989899989999999999999-87993---99-------------9889999999999986356


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEECH--HHCCCCHHHHHHHHHHHC-CCCCCEEEEECCC
Q ss_conf             4555665554456542046523775115--664800167899999721-2211146650675
Q 537021.9.peg.4   88 IDDVREIIDQIYYKPISARFRVYIMDEV--QMLSTAAFNGLLKTLEEP-PPHVKFIFATTEI  146 (369)
Q Consensus        88 id~ir~l~~~~~~~p~~~~~kv~iid~a--~~m~~~a~NaLLK~lEEP-p~~~~fil~t~~~  146 (369)
                      -+.-.++++.     + ...-+.||||.  +..|.-+..-|.-++..= -.+--.|++|+-+
T Consensus       160 ~~~~~e~l~~-----l-~~~dLLIiDDlG~e~~t~w~~e~lf~IIn~Ry~~~kptIiTTNl~  215 (262)
T PRK08116        160 KEDENEIIRA-----L-DNADLLILDDLGAEKDTEWVREKLYNIIDSRYRKGLPTIFTTNLS  215 (262)
T ss_pred             CHHHHHHHHH-----H-HCCCEEEEEHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             1019999998-----6-129989983221456987899999999999997699989987999


No 201
>smart00350 MCM minichromosome  maintenance proteins.
Probab=97.52  E-value=0.00055  Score=49.53  Aligned_cols=131  Identities=18%  Similarity=0.249  Sum_probs=70.4

Q ss_pred             CCCHHHHHHHHHHHHHC-------------CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             92848999999999982-------------87670620107879888899999999961468777886658789997799
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKS-------------GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQ   67 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~-------------~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~   67 (369)
                      |-|++.++..|-=++-.             |. .| .|+.|.||+||+.+-+..++--    +...+    .+|+..+-.
T Consensus       205 I~G~~~vK~allL~L~GG~~~~~~~g~~~Rg~-ih-iLLvGDPGtgKSqlLk~~~~ia----prsvy----tsG~gsS~a  274 (509)
T smart00350      205 IYGHEDIKKAILLLLFGGVHKNLPDGMKIRGD-IN-ILLLGDPGTAKSQLLKYVEKTA----PRAVY----TTGKGSSAV  274 (509)
T ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCCCEECCC-EE-EEEECCCCCCHHHHHHHHHHHC----CCEEE----EECCCCCCC
T ss_conf             23878899999999708876648988504154-14-9984699823629999999858----86068----734445557


Q ss_pred             HHHCCCCCCCCCCCCCCCCCHHHH-HH-HHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf             997798778222453322334555-66-5554456542046523775115664800167899999721221114665067
Q 537021.9.peg.4   68 AIIRGNHVDVVELDAASHTSIDDV-RE-IIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTE  145 (369)
Q Consensus        68 ~i~~~~~~d~~e~~~~s~~~id~i-r~-l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~  145 (369)
                      ..           .++  ..-|.. .+ .++-=.+  .-++.-|+.|||.|+|+.+..+||+-.||   .+++-|=    
T Consensus       275 GL-----------Taa--v~rd~~~ge~~leaGAL--VlAD~GiccIDEfdKm~~~dr~alhEaME---QQtisia----  332 (509)
T smart00350      275 GL-----------TAA--VTRDPETREFTLEGGAL--VLADNGVCCIDEFDKMDDSDRTAIHEAME---QQTISIA----  332 (509)
T ss_pred             CC-----------EEE--EEECCCCCCEEECCCCE--ECCCCCEEEEEEHHHCCHHHHHHHHHHHH---HCEEEEE----
T ss_conf             70-----------689--99817888378725641--20567547852132078778999999997---4877874----


Q ss_pred             CCCCCHHHHHHHHHHHCC
Q ss_conf             543303567543332102
Q 537021.9.peg.4  146 IRKIPITVLSRCQRFDLH  163 (369)
Q Consensus       146 ~~~ll~TI~SRcq~~~f~  163 (369)
                      -.-+..|+.+||-++.-.
T Consensus       333 KaGi~~tL~aR~sVlAAa  350 (509)
T smart00350      333 KAGITTTLNARCSVLAAA  350 (509)
T ss_pred             CCCEEEEEECCCEEEEEE
T ss_conf             375179985573599865


No 202
>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=97.51  E-value=0.00067  Score=48.91  Aligned_cols=146  Identities=25%  Similarity=0.331  Sum_probs=94.0

Q ss_pred             EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC----CCCCHHHHHHHHHH
Q ss_conf             06201078798888999999999614687778866587899977999977987782224533----22334555665554
Q 537021.9.peg.4   22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA----SHTSIDDVREIIDQ   97 (369)
Q Consensus        22 ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~----s~~~id~ir~l~~~   97 (369)
                      | .-|+|.||+||||.|...|+.|.-..-                  +..|.-.-+..=|-.    +|+ .-..+++++ 
T Consensus        60 h-m~ftG~PGtGkttva~~m~~~l~~lGy------------------~r~G~~~~~trddlvGqy~Ght-aPktke~lk-  118 (284)
T TIGR02880        60 H-MSFTGNPGTGKTTVALRMAQILHRLGY------------------VRKGHLVSVTRDDLVGQYIGHT-APKTKEVLK-  118 (284)
T ss_pred             E-EEECCCCCCCHHHHHHHHHHHHHHCCC------------------CCCCCEEEEEHHHHHHHHHCCC-CCHHHHHHH-
T ss_conf             6-775168987248999999999987154------------------0036267853001311221257-722689998-


Q ss_pred             HHHHHHCCCCCEEEEECHHHC---------CCCHHHHHHHHHHHCCCCCCEEEEECC-----CCCCCHHHHHHH-HHHHC
Q ss_conf             456542046523775115664---------800167899999721221114665067-----543303567543-33210
Q 537021.9.peg.4   98 IYYKPISARFRVYIMDEVQML---------STAAFNGLLKTLEEPPPHVKFIFATTE-----IRKIPITVLSRC-QRFDL  162 (369)
Q Consensus        98 ~~~~p~~~~~kv~iid~a~~m---------~~~a~NaLLK~lEEPp~~~~fil~t~~-----~~~ll~TI~SRc-q~~~f  162 (369)
                         + ..|+  |.+||||--+         -.+|-.-||..+|.--...+.||+.-.     --.--|-+.||. .|+.|
T Consensus       119 ---~-a~GG--vlfideayyly~P~nerdyG~eaieillq~men~r~~lvvi~aGy~~rm~~f~~snPG~~sr~a~h~~f  192 (284)
T TIGR02880       119 ---R-AMGG--VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGLSSRVAHHVDF  192 (284)
T ss_pred             ---H-HCCC--EEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCHHHHHHHHCCC
T ss_conf             ---7-4287--366422033217764102237999999998723655378887170788888751178624677643158


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             24540013567876431013456256644565
Q 537021.9.peg.4  163 HRISIGDLIELFTKILQEESIEFDPEAVAMIA  194 (369)
Q Consensus       163 ~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia  194 (369)
                      +-.+.+++...-..++...++.++.++-..+.
T Consensus       193 Pdy~~~~l~~ia~~~l~~~~y~~~~~~~~~~~  224 (284)
T TIGR02880       193 PDYSEEELLAIAELMLEEQQYRLSAEAEEALA  224 (284)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             88776789999999886541211188999999


No 203
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491   This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome.    ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=97.50  E-value=0.00013  Score=54.05  Aligned_cols=46  Identities=33%  Similarity=0.576  Sum_probs=38.5

Q ss_pred             CCCHHHHHHH----HHHHHHCCC---------CCEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             9284899999----999998287---------670620107879888899999999961
Q 537021.9.peg.4    1 MIGQKPMIKT----LTNAFKSGR---------IAQSYMLSGTRGIGKTTTARIIARSLN   46 (369)
Q Consensus         1 iiGq~~~~~~----l~~~~~~~~---------~~ha~lf~G~~G~GK~~~a~~~A~~l~   46 (369)
                      ||||+.+++.    |+|-+++-+         .|--.|--||.|+|||-.||.+||-.+
T Consensus        14 IiGQ~~AKk~VAiALrNRyrR~~L~~~L~~EV~PKNILMiGpTGVGKTEIARRlAKL~~   72 (463)
T TIGR00390        14 IIGQDEAKKAVAIALRNRYRRSQLEEELKDEVTPKNILMIGPTGVGKTEIARRLAKLAN   72 (463)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             20636678899999886677612871113565874304327889854479999999844


No 204
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.47  E-value=0.00086  Score=48.11  Aligned_cols=120  Identities=21%  Similarity=0.260  Sum_probs=64.1

Q ss_pred             CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHH----
Q ss_conf             2876706201078798888999999999614687778866587899977999977987782224533223345556----
Q 537021.9.peg.4   17 SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVR----   92 (369)
Q Consensus        17 ~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir----   92 (369)
                      +|.-+|-++.-|+.|+||+|+|+.+|+.|.|.--+.+.     .-.-.+-.++.+|.-.+            |+-|    
T Consensus         4 ~~~~~~iiVVMGVsGsGKSTig~~LA~~l~~~fiegDd-----fHp~~Ni~KM~~GiPLt------------D~DR~pWL   66 (177)
T PRK11545          4 TNHDHHIYVLMGVSGSGKSAVASAVAHQLHAAFLDGDF-----LHPRCNIEKMASGEPLN------------DDDRKPWL   66 (177)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEECCCC-----CCCHHHHHHHHCCCCCC------------HHHHHHHH
T ss_conf             67887599998479899999999999981998553655-----58999999862899998------------68889999


Q ss_pred             -HHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             -65554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4   93 -EIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF  160 (369)
Q Consensus        93 -~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~  160 (369)
                       .|.+.+.-. ...+.-.++--.  .|.+.=    +..|-+..+++.||.+.-+.+-+..-+..|--||
T Consensus        67 ~~l~~~~~~~-~~~~~~~VlaCS--ALKr~Y----Rd~Lr~~~~~~~fv~L~g~~~~i~~Rl~~R~~HF  128 (177)
T PRK11545         67 QALNDAAFAM-QRTNKVSLIVCS--ALKKHY----RDLLREGNPNLSFIYLKGDFDVIESRLKARKGHF  128 (177)
T ss_pred             HHHHHHHHHH-HCCCCCEEEEEC--CCCHHH----HHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCC
T ss_conf             9999999999-726996699870--111999----9999806997599997299999999997464689


No 205
>KOG0652 consensus
Probab=97.46  E-value=0.0014  Score=46.61  Aligned_cols=167  Identities=22%  Similarity=0.272  Sum_probs=80.4

Q ss_pred             CHHHHHHHHHHHHH-----------C-CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             84899999999998-----------2-87670620107879888899999999961468777886658789997799997
Q 537021.9.peg.4    3 GQKPMIKTLTNAFK-----------S-GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAII   70 (369)
Q Consensus         3 Gq~~~~~~l~~~~~-----------~-~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~   70 (369)
                      |-+.-++.|..++.           - =+-|...|.+||||+|||.+||++|..-|.+-....+|..         .++.
T Consensus       175 GldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL---------VQMf  245 (424)
T KOG0652         175 GLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL---------VQMF  245 (424)
T ss_pred             CHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHHCCHHH---------HHHH
T ss_conf             5789999999886145656878874688899722765799975779999998740106887326477---------7665


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC-----------CCHHHHHHHHH---HH--CC
Q ss_conf             7987782224533223345556655544565420465237751156648-----------00167899999---72--12
Q 537021.9.peg.4   71 RGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS-----------TAAFNGLLKTL---EE--PP  134 (369)
Q Consensus        71 ~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~-----------~~a~NaLLK~l---EE--Pp  134 (369)
                      -|        |||     .-+|+-.   .+. -+-..-|++|||.|..-           ++-|-..|-.|   .-  |.
T Consensus       246 IG--------dGA-----kLVRDAF---aLA-KEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~  308 (424)
T KOG0652         246 IG--------DGA-----KLVRDAF---ALA-KEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD  308 (424)
T ss_pred             HC--------CHH-----HHHHHHH---HHH-HCCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf             33--------418-----8999999---875-334983899730023233436531234389999999999860489975


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHH----HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHCCC
Q ss_conf             21114665067543303567543----33210245400135678764310134562566-445653167
Q 537021.9.peg.4  135 PHVKFIFATTEIRKIPITVLSRC----QRFDLHRISIGDLIELFTKILQEESIEFDPEA-VAMIARASD  198 (369)
Q Consensus       135 ~~~~fil~t~~~~~ll~TI~SRc----q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~-l~~ia~~s~  198 (369)
                      ..+..| ++|+--.++.+-.=|.    ..+.| |.+.++-..++.+|-.. ++...++. .+-+|+..+
T Consensus       309 ~~vKvi-AATNRvDiLDPALlRSGRLDRKIEf-P~Pne~aRarIlQIHsR-KMnv~~DvNfeELaRsTd  374 (424)
T KOG0652         309 DRVKVI-AATNRVDILDPALLRSGRLDRKIEF-PHPNEEARARILQIHSR-KMNVSDDVNFEELARSTD  374 (424)
T ss_pred             CCEEEE-EECCCCCCCCHHHHHCCCCCCCCCC-CCCCHHHHHHHHHHHHH-CCCCCCCCCHHHHHHCCC
T ss_conf             626788-5216434348888644664444348-89977898899988640-057788879899853335


No 206
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=97.42  E-value=9.1e-05  Score=55.28  Aligned_cols=145  Identities=17%  Similarity=0.173  Sum_probs=68.2

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCCC-CCCCCHH---HHHHHCCCCCCCCCCCCCC-----CCCH--HHH
Q ss_conf             201078798888999999999614687-77886658-7899977---9999779877822245332-----2334--555
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLNYKTA-HIDVPTVE-FEGFGEH---CQAIIRGNHVDVVELDAAS-----HTSI--DDV   91 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~-~~~~~~~~-~c~~c~~---c~~i~~~~~~d~~e~~~~s-----~~~i--d~i   91 (369)
                      ++++|+||+||||+.+-++..|--..- -....|.+ -.+....   +..+..|..--+-..+..+     +..|  +..
T Consensus         2 i~ITG~pGvGKTTli~kv~~~l~~~~~~v~GF~T~evre~g~R~GF~iv~l~~g~~~~la~~~~~~~~~vGky~v~~~~f   81 (168)
T pfam03266         2 IFITGPPGVGKTTLVKKVIELLKSEGVKVGGFYTPEVREGGRRIGFDIVDLASGERGPLARVGGVSGPRVGKYVVNLEEF   81 (168)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCEECCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCEECHHHH
T ss_conf             89978999889999999999998679707489930212589378999999047826774440688775457716668999


Q ss_pred             HHH-HHHHHHHHHCCCCCEEEEECHHHC---CCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH--HHHHHCCCC
Q ss_conf             665-554456542046523775115664---80016789999972122111466506754330356754--333210245
Q 537021.9.peg.4   92 REI-IDQIYYKPISARFRVYIMDEVQML---STAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSR--CQRFDLHRI  165 (369)
Q Consensus        92 r~l-~~~~~~~p~~~~~kv~iid~a~~m---~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SR--cq~~~f~~l  165 (369)
                      -.+ .+-+...  .....++||||.-.|   +..-..++.+.|+- +..++..+--.....++..|+.|  +..|.+.+-
T Consensus        82 e~~~~~~L~~a--~~~~dlivIDEIG~mEl~s~~F~~~v~~~l~~-~~~vl~ti~~~~~~~~v~~i~~~~d~~i~~vt~~  158 (168)
T pfam03266        82 EEIALPALRRA--LEEADLIIIDEIGPMELKSPKFREAIEEVLSS-NKPVLAVVHRRSDSPLVERIRRRPDVKIFVVTEE  158 (168)
T ss_pred             HHHHHHHHHHC--CCCCCEEEEECCCHHHHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCHHHHHHHCCCCCEEEEECHH
T ss_conf             99999999840--66898999976314533149999999999669-9979999972589838999741799389997868


Q ss_pred             CCHHHH
Q ss_conf             400135
Q 537021.9.peg.4  166 SIGDLI  171 (369)
Q Consensus       166 ~~~~i~  171 (369)
                      ..+.+.
T Consensus       159 NRd~l~  164 (168)
T pfam03266       159 NRDALP  164 (168)
T ss_pred             HHHHHH
T ss_conf             866446


No 207
>PRK08181 transposase; Validated
Probab=97.41  E-value=0.00049  Score=49.88  Aligned_cols=104  Identities=14%  Similarity=0.174  Sum_probs=61.7

Q ss_pred             HHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             99982876706201078798888999999999614687778866587899977999977987782224533223345556
Q 537021.9.peg.4   13 NAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVR   92 (369)
Q Consensus        13 ~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir   92 (369)
                      ++++++   +..+|.||+|+|||-+|-+++... |..+..                        |....+.  .=+++.+
T Consensus       101 ~fi~~~---~Nvil~Gp~GtGKThLA~Alg~~A-~~~G~~------------------------V~f~~~~--~L~~~L~  150 (269)
T PRK08181        101 SWLAKG---ANLLLFGPPGGGKSHLAAAIGLAL-IENGWR------------------------VLFTRTT--DLVQKLQ  150 (269)
T ss_pred             HHHHCC---CEEEEECCCCCCHHHHHHHHHHHH-HHCCCE------------------------EEEEEHH--HHHHHHH
T ss_conf             588648---708998999987889999999999-987993------------------------9997899--9999999


Q ss_pred             HHH---HHHHHHHHCCCCCEEEEECHH--HCCCCHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf             655---544565420465237751156--648001678999997212211146650675
Q 537021.9.peg.4   93 EII---DQIYYKPISARFRVYIMDEVQ--MLSTAAFNGLLKTLEEPPPHVKFIFATTEI  146 (369)
Q Consensus        93 ~l~---~~~~~~p~~~~~kv~iid~a~--~m~~~a~NaLLK~lEEPp~~~~fil~t~~~  146 (369)
                      .-.   ....+.-.-.++.+.||||.-  .++...++-|...+++=-+..-.|++|+-|
T Consensus       151 ~a~~~~~~~~~~~~l~~~dLLIiDe~G~~~~~~~~~~~lf~lI~~Rye~~S~IITSn~~  209 (269)
T PRK08181        151 VARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP  209 (269)
T ss_pred             HHHHCCCHHHHHHHHHCCCEEEEHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             97755839999999744460122010566799899999999999985788889988999


No 208
>KOG0736 consensus
Probab=97.33  E-value=0.00083  Score=48.19  Aligned_cols=126  Identities=21%  Similarity=0.280  Sum_probs=68.8

Q ss_pred             CHHHHHHHHHHHHHC----------CCC-CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf             848999999999982----------876-706201078798888999999999614687778866587899977999977
Q 537021.9.peg.4    3 GQKPMIKTLTNAFKS----------GRI-AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIR   71 (369)
Q Consensus         3 Gq~~~~~~l~~~~~~----------~~~-~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~   71 (369)
                      |=+.+++.+...|+-          |-- --..||+||||+|||.+|++.|-..  .-....       =+.+.-.-+.-
T Consensus       676 GLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc--sL~FlS-------VKGPELLNMYV  746 (953)
T KOG0736         676 GLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC--SLNFLS-------VKGPELLNMYV  746 (953)
T ss_pred             CHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHC--EEEEEE-------ECCHHHHHHHH
T ss_conf             789999999987547543756651254313505887799985579999987543--036785-------05889988774


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHH-------------HHHHHHHHC---CC
Q ss_conf             98778222453322334555665554456542046523775115664800167-------------899999721---22
Q 537021.9.peg.4   72 GNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFN-------------GLLKTLEEP---PP  135 (369)
Q Consensus        72 ~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~N-------------aLLK~lEEP---p~  135 (369)
                      |.             +=+.+|++-++++-    +..=|+++||.|.+-..--|             -||--|.--   +.
T Consensus       747 Gq-------------SE~NVR~VFerAR~----A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s  809 (953)
T KOG0736         747 GQ-------------SEENVREVFERARS----AAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSS  809 (953)
T ss_pred             CC-------------HHHHHHHHHHHHHC----CCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf             30-------------18889999998544----69749983121232756788788654089999999998626667888


Q ss_pred             CCCEEEEECC-CCCCCHHHH
Q ss_conf             1114665067-543303567
Q 537021.9.peg.4  136 HVKFIFATTE-IRKIPITVL  154 (369)
Q Consensus       136 ~~~fil~t~~-~~~ll~TI~  154 (369)
                      .-+||+-+|| |+-|=|...
T Consensus       810 ~~VFViGATNRPDLLDpALL  829 (953)
T KOG0736         810 QDVFVIGATNRPDLLDPALL  829 (953)
T ss_pred             CCEEEEECCCCCCCCCHHHC
T ss_conf             86599825888554576553


No 209
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=97.32  E-value=0.00059  Score=49.32  Aligned_cols=99  Identities=21%  Similarity=0.273  Sum_probs=56.9

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC-CCCC-CCCCHHHHHHHHHHH
Q ss_conf             70620107879888899999999961468777886658789997799997798778222-4533-223345556655544
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVE-LDAA-SHTSIDDVREIIDQI   98 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e-~~~~-s~~~id~ir~l~~~~   98 (369)
                      ++..+|+||+|+|||-+|-+++..+ |..+....                --+-||+++ +..+ ...+   ..+++   
T Consensus        47 ~~Nlll~G~~GtGKThLA~Ai~~~~-~~~g~~v~----------------f~~~~~L~~~l~~~~~~~~---~~~~l---  103 (178)
T pfam01695        47 AENLLLLGPPGVGKTHLACALGHQA-CRAGYSVL----------------FTRTPDLVEQLKRARGDGR---LARTL---  103 (178)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHH-HHCCCEEE----------------EEECHHHHHHHHHHHHCCC---HHHHH---
T ss_conf             8768998999987899999999999-98698599----------------9961679999998752674---99999---


Q ss_pred             HHHHHCCCCCEEEEECH--HHCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf             56542046523775115--664800167899999721221114665067
Q 537021.9.peg.4   99 YYKPISARFRVYIMDEV--QMLSTAAFNGLLKTLEEPPPHVKFIFATTE  145 (369)
Q Consensus        99 ~~~p~~~~~kv~iid~a--~~m~~~a~NaLLK~lEEPp~~~~fil~t~~  145 (369)
                        + .-.+..+.||||.  +.++..+++-|...+++=-++.-.|++|+.
T Consensus       104 --~-~~~~~dlLIiDDlG~~~~s~~~~~~lf~li~~Rye~~stIiTSN~  149 (178)
T pfam01695       104 --Q-RLAKADLLILDDIGYLPLSQEAAHLLFELISDRYERRSTILTSNL  149 (178)
T ss_pred             --H-HHHCCCEEEEEHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf             --9-962589788720016568989999999999999756886877689


No 210
>KOG0735 consensus
Probab=97.29  E-value=0.0013  Score=46.74  Aligned_cols=164  Identities=21%  Similarity=0.299  Sum_probs=88.6

Q ss_pred             CHHHHHHHHHHHHHC------------CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             848999999999982------------87670620107879888899999999961468777886658789997799997
Q 537021.9.peg.4    3 GQKPMIKTLTNAFKS------------GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAII   70 (369)
Q Consensus         3 Gq~~~~~~l~~~~~~------------~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~   70 (369)
                      |-..+++.|...+.-            =|++-..|++||||||||.+|-+.|...+-.--...+                
T Consensus       671 g~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKG----------------  734 (952)
T KOG0735         671 GLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKG----------------  734 (952)
T ss_pred             CHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCEEEEEECC----------------
T ss_conf             5899999999998554103678860886665545887799985788888888537805998258----------------


Q ss_pred             CCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHC-----------CCCHHHHHHHHHHH--CCC
Q ss_conf             79877822--2453322334555665554456542046523775115664-----------80016789999972--122
Q 537021.9.peg.4   71 RGNHVDVV--ELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQML-----------STAAFNGLLKTLEE--PPP  135 (369)
Q Consensus        71 ~~~~~d~~--e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m-----------~~~a~NaLLK~lEE--Pp~  135 (369)
                          |.++  +| |+   +=+.||++-+.++.    ++.=|.++||.|.+           |-.--|-||--|.-  --.
T Consensus       735 ----PElL~KyI-Ga---SEq~vR~lF~rA~~----a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~  802 (952)
T KOG0735         735 ----PELLSKYI-GA---SEQNVRDLFERAQS----AKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLD  802 (952)
T ss_pred             ----HHHHHHHH-CC---CHHHHHHHHHHHHC----CCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf             ----89999874-50---07889999998651----49748971210243766687777742999999987603633445


Q ss_pred             CCCEEEE-ECCCCCCCHHHHH--HHHHHHCCCCCCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
Q ss_conf             1114665-0675433035675--4333210245400----1356787643101345625664456531676
Q 537021.9.peg.4  136 HVKFIFA-TTEIRKIPITVLS--RCQRFDLHRISIG----DLIELFTKILQEESIEFDPEAVAMIARASDG  199 (369)
Q Consensus       136 ~~~fil~-t~~~~~ll~TI~S--Rcq~~~f~~l~~~----~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~G  199 (369)
                      + ++|++ |+.|+-|=|.+.-  |--+.-+-++|.+    +|.+.|.+   . -..-++-.++.+|...+|
T Consensus       803 G-V~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~---s-~~~~~~vdl~~~a~~T~g  868 (952)
T KOG0735         803 G-VYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSN---S-LLKDTDVDLECLAQKTDG  868 (952)
T ss_pred             E-EEEEEECCCCCCCCHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHH---C-CCCCCCCCHHHHHHHCCC
T ss_conf             3-8999733783436776628876540156799892899999999853---4-577521016887652178


No 211
>KOG0727 consensus
Probab=97.28  E-value=0.0011  Score=47.28  Aligned_cols=124  Identities=22%  Similarity=0.299  Sum_probs=64.3

Q ss_pred             CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             67062010787988889999999996146877788665878999779999779877822245332233455566555445
Q 537021.9.peg.4   20 IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIY   99 (369)
Q Consensus        20 ~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~   99 (369)
                      -|...|++||||||||.+|++.|..-   ...+.    .-.| ..-.++.. |          .   |---+|++.   +
T Consensus       188 pprgvllygppg~gktml~kava~~t---~a~fi----rvvg-sefvqkyl-g----------e---gprmvrdvf---r  242 (408)
T KOG0727         188 PPRGVLLYGPPGTGKTMLAKAVANHT---TAAFI----RVVG-SEFVQKYL-G----------E---GPRMVRDVF---R  242 (408)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHCC---CHHEE----EECC-HHHHHHHH-C----------C---CCHHHHHHH---H
T ss_conf             98622775799975789999986126---11144----6301-89999985-5----------4---838999999---9


Q ss_pred             HHHHCCCCCEEEEECHHHCCC-----------CHHHHHHHHHH-----HCCCCCCEEEEECCCCCCCHHHHHHH---HHH
Q ss_conf             654204652377511566480-----------01678999997-----21221114665067543303567543---332
Q 537021.9.peg.4  100 YKPISARFRVYIMDEVQMLST-----------AAFNGLLKTLE-----EPPPHVKFIFATTEIRKIPITVLSRC---QRF  160 (369)
Q Consensus       100 ~~p~~~~~kv~iid~a~~m~~-----------~a~NaLLK~lE-----EPp~~~~fil~t~~~~~ll~TI~SRc---q~~  160 (369)
                      +. -+.-.-|++|||.|...+           +-|--|+..|-     .+..|+..|++|+..+-+=|.+.---   ..+
T Consensus       243 la-kenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrki  321 (408)
T KOG0727         243 LA-KENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKI  321 (408)
T ss_pred             HH-HCCCCCEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCCC
T ss_conf             87-61698379862245676641244446318999999999975147676665589983275556687662876434443


Q ss_pred             HCCCCCCHH
Q ss_conf             102454001
Q 537021.9.peg.4  161 DLHRISIGD  169 (369)
Q Consensus       161 ~f~~l~~~~  169 (369)
                      .|+-+...+
T Consensus       322 efplpdrrq  330 (408)
T KOG0727         322 EFPLPDRRQ  330 (408)
T ss_pred             CCCCCCHHH
T ss_conf             577985466


No 212
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.24  E-value=0.0021  Score=45.24  Aligned_cols=121  Identities=17%  Similarity=0.153  Sum_probs=63.0

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             20107879888899999999961468777886658789997799997798778222453322334555665554456542
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPI  103 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~  103 (369)
                      ++..|+.|+||||+|..||+.+.|..-..+..-     .-.+-.++..|.-++--     .  .....+.+...+...-.
T Consensus         2 iiv~GvsGsGKSTia~~La~~lg~~~i~~D~~h-----~~~n~~km~~G~pL~d~-----d--r~~wl~~l~~~~~~~~~   69 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERLGAPFIDGDDLH-----PPANIAKMAAGIPLNDE-----D--RWPWLQALTDALLAKLA   69 (150)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEECCCCCC-----CHHHHHHHHCCCCCCCC-----C--HHHHHHHHHHHHHHHHH
T ss_conf             899918999999999999997199564154335-----47689998679998852-----3--78999999999999998


Q ss_pred             CCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4  104 SARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF  160 (369)
Q Consensus       104 ~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~  160 (369)
                      .+++.|++  +|-.+.+.--+-|....++  .++.||++...++-+..=+..|--||
T Consensus        70 ~~g~~vVv--~cSaLk~~yR~~l~~~~~~--~~v~fi~L~~~~~~l~~Rl~~R~~hf  122 (150)
T cd02021          70 SAGEGVVV--ACSALKRIYRDILRGGAAN--PRVRFVHLDGPREVLAERLAARKGHF  122 (150)
T ss_pred             HCCCCEEE--EEHHHHHHHHHHHHHHCCC--CCEEEEEEECCHHHHHHHHHHCCCCC
T ss_conf             44998799--8433239999999952768--98589998699999999998463579


No 213
>KOG0741 consensus
Probab=97.23  E-value=0.0012  Score=47.12  Aligned_cols=102  Identities=31%  Similarity=0.531  Sum_probs=61.9

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             62010787988889999999996146877788665878999779999779877822245332233455566555445654
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKP  102 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p  102 (369)
                      +.||.||+|+|||++|--.|+.-       +.|-+.-|.-    ..        .+-+  ....++..|+.+-++++.+|
T Consensus       540 SvLl~Gp~~sGKTaLAA~iA~~S-------~FPFvKiiSp----e~--------miG~--sEsaKc~~i~k~F~DAYkS~  598 (744)
T KOG0741         540 SVLLEGPPGSGKTALAAKIALSS-------DFPFVKIISP----ED--------MIGL--SESAKCAHIKKIFEDAYKSP  598 (744)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHC-------CCCEEEEECH----HH--------HCCC--CHHHHHHHHHHHHHHHHCCC
T ss_conf             89986699887688999997527-------9984797377----87--------0374--66788999999888763386


Q ss_pred             HCCCCCEEEEECHHHC----------CCCHHHHHHHHHHHCCCC--CCEEEEECCCCCC
Q ss_conf             2046523775115664----------800167899999721221--1146650675433
Q 537021.9.peg.4  103 ISARFRVYIMDEVQML----------STAAFNGLLKTLEEPPPH--VKFIFATTEIRKI  149 (369)
Q Consensus       103 ~~~~~kv~iid~a~~m----------~~~a~NaLLK~lEEPp~~--~~fil~t~~~~~l  149 (369)
                      ..    |+|+|+.+++          +.---.||+-.|-++|+.  -+||++||+.--+
T Consensus       599 ls----iivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~v  653 (744)
T KOG0741         599 LS----IIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREV  653 (744)
T ss_pred             CE----EEEECCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHH
T ss_conf             50----89981556562002468403579999999995248988845999962407999


No 214
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938    The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=97.22  E-value=0.0012  Score=46.98  Aligned_cols=112  Identities=20%  Similarity=0.234  Sum_probs=66.5

Q ss_pred             CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             67062010787988889999999996146877788665878999779999779877822245332233455566555445
Q 537021.9.peg.4   20 IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIY   99 (369)
Q Consensus        20 ~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~   99 (369)
                      -|...|++||||+|||.+|+++|...+..--..++|-.            .+..      . |   -+=+..|++.+.+.
T Consensus       239 PPkG~ll~GPPGtGktllaka~ane~~a~f~~inGPei------------msky------~-G---e~e~~lr~if~eae  296 (980)
T TIGR01243       239 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFIAINGPEI------------MSKY------Y-G---ESEERLREIFKEAE  296 (980)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCHH------------HHHH------C-C---CCHHHHHHHHHHHH
T ss_conf             98735875589861789999987530551788506034------------4331------3-6---30789999998653


Q ss_pred             HHHHCCCCCEEEEECHHHCCC-----------CHHHHHHHHHHH--CCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf             654204652377511566480-----------016789999972--1221114665067543303567543
Q 537021.9.peg.4  100 YKPISARFRVYIMDEVQMLST-----------AAFNGLLKTLEE--PPPHVKFIFATTEIRKIPITVLSRC  157 (369)
Q Consensus       100 ~~p~~~~~kv~iid~a~~m~~-----------~a~NaLLK~lEE--Pp~~~~fil~t~~~~~ll~TI~SRc  157 (369)
                          +.-.-|++|||.|.+..           .--..||-.|.-  --..++.|-+|+.|+.+=|++|--.
T Consensus       297 ----enaP~iifideidaiaPkr~e~~Geve~r~v~qlltlmdGlk~rG~v~viGatnrP~a~dPalrrPG  363 (980)
T TIGR01243       297 ----ENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGKVIVIGATNRPDALDPALRRPG  363 (980)
T ss_pred             ----HCCCCEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHCCCC
T ss_conf             ----0587078741211007641000016889999999999740024872899814688500262242788


No 215
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.18  E-value=0.0016  Score=46.02  Aligned_cols=121  Identities=16%  Similarity=0.241  Sum_probs=67.1

Q ss_pred             EEHHCCCCCCCHHHHHHHHH-HHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC---------CC---CHH
Q ss_conf             62010787988889999999-996146877788665878999779999779877822245332---------23---345
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIA-RSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAAS---------HT---SID   89 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A-~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s---------~~---~id   89 (369)
                      .+.|.||.|+||||+.=-+| +..+-+.......+                  .|.+.|.|..         ++   -|.
T Consensus       225 vi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT------------------~DTYRIgAvEQLktYa~Il~iPv~vv~  286 (432)
T PRK12724        225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYT------------------TDNYRIAAIEQLKRYADTMGMPFYPVK  286 (432)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEE------------------CCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             99998999988899999999999997499279995------------------266537799999999998599459951


Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHH-----HHHHHHH-HHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf             5566555445654204652377511566480016-----7899999-721221114665067543303567543332102
Q 537021.9.peg.4   90 DVREIIDQIYYKPISARFRVYIMDEVQMLSTAAF-----NGLLKTL-EEPPPHVKFIFATTEIRKIPITVLSRCQRFDLH  163 (369)
Q Consensus        90 ~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~-----NaLLK~l-EEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f~  163 (369)
                      +..++.+-+.    +.++.+++||-|-+-.++..     ..|+... |.++-.++++|.+|.-.+-+..|..|-..+++.
T Consensus       287 ~~~el~~al~----~~~~DlILIDTAGrS~rd~~~~~eL~~ll~~~~~~~~ie~~LVLSaTtk~~dl~~ii~~f~~l~~~  362 (432)
T PRK12724        287 DIKKFKETLA----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYR  362 (432)
T ss_pred             CHHHHHHHHH----HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCC
T ss_conf             8999999998----569999999299989789999999999998636678851799997889989999999984269998


Q ss_pred             CC
Q ss_conf             45
Q 537021.9.peg.4  164 RI  165 (369)
Q Consensus       164 ~l  165 (369)
                      .+
T Consensus       363 ~l  364 (432)
T PRK12724        363 RI  364 (432)
T ss_pred             EE
T ss_conf             49


No 216
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.17  E-value=0.0023  Score=45.01  Aligned_cols=98  Identities=19%  Similarity=0.233  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             89999999999828767062010787988889999999996146877788665878999779999779877822245332
Q 537021.9.peg.4    5 KPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAAS   84 (369)
Q Consensus         5 ~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s   84 (369)
                      ..+...+...+..-.-+-.++|+||+|+|||-+|-++|..+. ..+..                        ++.+    
T Consensus        89 ~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKthLa~Ai~~~l~-~~g~s------------------------v~f~----  139 (254)
T COG1484          89 KKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAGIS------------------------VLFI----  139 (254)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHH-HCCCE------------------------EEEE----
T ss_conf             999999999998732588289989999879999999999999-83984------------------------9998----


Q ss_pred             CCCHHHHHHHHHHHH-------HHHHCCCCCEEEEECHHH--CCCCHHHHHHHHHHH
Q ss_conf             233455566555445-------654204652377511566--480016789999972
Q 537021.9.peg.4   85 HTSIDDVREIIDQIY-------YKPISARFRVYIMDEVQM--LSTAAFNGLLKTLEE  132 (369)
Q Consensus        85 ~~~id~ir~l~~~~~-------~~p~~~~~kv~iid~a~~--m~~~a~NaLLK~lEE  132 (369)
                       +-.|-+++|.....       +.-.-..+.|.||||.-.  ++...++-+.-++..
T Consensus       140 -~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~  195 (254)
T COG1484         140 -TAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEPFSQEEADLLFQLISR  195 (254)
T ss_pred             -EHHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf             -85999999999874552689999887528989982367766881558799999999


No 217
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=97.17  E-value=0.031  Score=36.62  Aligned_cols=89  Identities=17%  Similarity=0.231  Sum_probs=51.5

Q ss_pred             HHCCCCCEEEEECHHHC--C---CCHHHHHHHHHHHCCCCCCEEEEECCCC-----CCCHHHHHHHH-HHHCCCCCCHHH
Q ss_conf             42046523775115664--8---0016789999972122111466506754-----33035675433-321024540013
Q 537021.9.peg.4  102 PISARFRVYIMDEVQML--S---TAAFNGLLKTLEEPPPHVKFIFATTEIR-----KIPITVLSRCQ-RFDLHRISIGDL  170 (369)
Q Consensus       102 p~~~~~kv~iid~a~~m--~---~~a~NaLLK~lEEPp~~~~fil~t~~~~-----~ll~TI~SRcq-~~~f~~l~~~~i  170 (369)
                      ...|+..+++||||.++  +   ..-..-.|||+=.  .|++.+|+|.+|+     .+.++|+.=|. ++.|+.+...+ 
T Consensus       638 ~ldG~p~ii~iDE~W~~l~~~~f~~~i~~~lkt~RK--~N~~vv~aTQs~~d~~~s~i~~~iieq~~T~I~LPN~~A~~-  714 (800)
T PRK13898        638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK--LNTFVIFATQSVEDASKSAISDTLVQQTATQIFLPNLKATD-  714 (800)
T ss_pred             HCCCCCEEEEEECHHHHHCCHHHHHHHHHHHHHHHH--CCCEEEEEECCHHHHHCCCHHHHHHHHCCEEEECCCCCCHH-
T ss_conf             528982699960336663799999999999999987--39779998088999862846899998688579887811009-


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHCCCCC
Q ss_conf             567876431013456256644565316764
Q 537021.9.peg.4  171 IELFTKILQEESIEFDPEAVAMIARASDGS  200 (369)
Q Consensus       171 ~~~L~~i~~~E~i~~d~~~l~~ia~~s~Gs  200 (369)
                       .|.      +++.+++.-.+.|.....++
T Consensus       715 -~y~------~~f~Lt~~E~~~i~~~~~~s  737 (800)
T PRK13898        715 -IYR------SVFMLSEREYILIKHTDPTT  737 (800)
T ss_pred             -HHH------HHCCCCHHHHHHHHHCCCCC
T ss_conf             -999------86599999999997179657


No 218
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=97.17  E-value=0.0029  Score=44.23  Aligned_cols=131  Identities=20%  Similarity=0.318  Sum_probs=59.1

Q ss_pred             HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH--HHH----HHHC--CCCC-CCC-
Q ss_conf             99999998287670620107879888899999999961468777886658789997--799----9977--9877-822-
Q 537021.9.peg.4    9 KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGE--HCQ----AIIR--GNHV-DVV-   78 (369)
Q Consensus         9 ~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~--~c~----~i~~--~~~~-d~~-   78 (369)
                      +.+..+|++|.   ..+++|..|+||||=.   -+.++ +.+. ...+.-.|-+=.  +++    +|..  |... +.+ 
T Consensus        80 ~~i~~~i~~nq---Vvii~GeTGsGKTTQi---Pq~~l-e~g~-g~~~~I~~TQPRRiAA~svA~RVA~E~~~~lG~~VG  151 (1295)
T PRK11131         80 QDILEAIRDHQ---VVIVAGETGSGKTTQL---PKICL-ELGR-GIKGLIGHTQPRRLAARTVANRIAEELETELGGCVG  151 (1295)
T ss_pred             HHHHHHHHHCC---EEEEECCCCCCHHHHH---HHHHH-HCCC-CCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             99999999799---6999768999878899---99999-6279-999989977965999999999999981999899888


Q ss_pred             -CC---CCCC-CCCH----HHHHHHHHHHHHHHHCCCCCEEEEECHH--HCCCCHHHHHHHHHHHCCCCCCEEEE--ECC
Q ss_conf             -24---5332-2334----5556655544565420465237751156--64800167899999721221114665--067
Q 537021.9.peg.4   79 -EL---DAAS-HTSI----DDVREIIDQIYYKPISARFRVYIMDEVQ--MLSTAAFNGLLKTLEEPPPHVKFIFA--TTE  145 (369)
Q Consensus        79 -e~---~~~s-~~~i----d~ir~l~~~~~~~p~~~~~kv~iid~a~--~m~~~a~NaLLK~lEEPp~~~~fil~--t~~  145 (369)
                       -|   +..| ++.|    |-|  |+..+..-|.-.+|-++||||||  .++.+--=.+||.+=.--+....|+.  |-+
T Consensus       152 Y~VRf~~~~s~~t~i~~~TdGi--LL~e~~~d~~L~~y~~iIiDEaHERsl~~D~LLg~Lk~ll~~R~dLKvIimSATid  229 (1295)
T PRK11131        152 YKVRFNDQVSDNTMVKLMTDGI--LLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATID  229 (1295)
T ss_pred             EEECCCCCCCCCCEEEEECCHH--HHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             8945698879997799976569--99986209987887779986855688019999999999983399988999558689


Q ss_pred             CCCC
Q ss_conf             5433
Q 537021.9.peg.4  146 IRKI  149 (369)
Q Consensus       146 ~~~l  149 (369)
                      ++++
T Consensus       230 ~e~f  233 (1295)
T PRK11131        230 PERF  233 (1295)
T ss_pred             HHHH
T ss_conf             7999


No 219
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.17  E-value=0.0013  Score=46.66  Aligned_cols=44  Identities=20%  Similarity=0.335  Sum_probs=25.1

Q ss_pred             HCCCCCEEEEECHHHCCCCHHHHHHHHHHH-CCCCCCEEEEECCC
Q ss_conf             204652377511566480016789999972-12211146650675
Q 537021.9.peg.4  103 ISARFRVYIMDEVQMLSTAAFNGLLKTLEE-PPPHVKFIFATTEI  146 (369)
Q Consensus       103 ~~~~~kv~iid~a~~m~~~a~NaLLK~lEE-Pp~~~~fil~t~~~  146 (369)
                      ...++.++||||||.+....+...+..+-+ =+.+..+++.|..|
T Consensus       126 ~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~  170 (201)
T smart00487      126 ELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATP  170 (201)
T ss_pred             CCCCCEEEEEECHHHHHCCCCHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf             525431999989677512570999999999679999789992489


No 220
>PRK13695 putative NTPase; Provisional
Probab=97.17  E-value=0.0005  Score=49.86  Aligned_cols=144  Identities=22%  Similarity=0.192  Sum_probs=63.3

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCC-CCCCCCC--CCC--CHHHHHHHCCCCCCCCCCCCCCC-----CCH--
Q ss_conf             70620107879888899999999961468777-8866587--899--97799997798778222453322-----334--
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHI-DVPTVEF--EGF--GEHCQAIIRGNHVDVVELDAASH-----TSI--   88 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~-~~~~~~~--c~~--c~~c~~i~~~~~~d~~e~~~~s~-----~~i--   88 (369)
                      +.-.+++|+||+||||+.+-....|-+..... ...|.+-  .|.  .-.|..+..|...-+-..+..|.     .+|  
T Consensus         3 ~~kI~iTG~PGvGKTTli~Kv~~~L~~~g~~v~GF~T~Evre~G~R~GF~vv~l~~g~~~~lA~~~~~~~~~VgkY~V~~   82 (174)
T PRK13695          3 ALRIGITGMPGVGKTTLVLKIAELLAREGYKVGGFITEEVREGGKRIGFKIIDLDTGEEGILARVGAVSRPRVGKYVVNL   82 (174)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCEEEEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEH
T ss_conf             42999878999889999999999986369617469952560388285059999058856876753788985545668716


Q ss_pred             HHHHHH-HHHHHHHHHCCCCCEEEEECHHHC---CCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH-HHHHCC
Q ss_conf             555665-554456542046523775115664---800167899999721221114665067543303567543-332102
Q 537021.9.peg.4   89 DDVREI-IDQIYYKPISARFRVYIMDEVQML---STAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRC-QRFDLH  163 (369)
Q Consensus        89 d~ir~l-~~~~~~~p~~~~~kv~iid~a~~m---~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRc-q~~~f~  163 (369)
                      +..-.+ ..-++....  .-.++||||.-.|   +..-.++.++.|+-+. .  .+.+-+  ..++..|++|= ..|.+.
T Consensus        83 ~~~e~~~~~~l~~a~~--~~dlivIDEIG~MEl~s~~F~~~V~~~L~s~k-p--vl~tih--~p~v~~ik~~~~~v~~vT  155 (174)
T PRK13695         83 EDLERIAIPAISRALR--EADLIIIDEIGPMELKSKKFVSAVEEVLKSEK-P--VIATVH--RPVVQRIRSLGGEVFWLT  155 (174)
T ss_pred             HHHHHHHHHHHHHCCC--CCCEEEEECCCHHHHHHHHHHHHHHHHHCCCC-C--EEEEEC--HHHHHHHHCCCCEEEEEC
T ss_conf             8978998999983535--78799996310331104999999999973899-8--999977--588898633798999989


Q ss_pred             CCCCHHHH
Q ss_conf             45400135
Q 537021.9.peg.4  164 RISIGDLI  171 (369)
Q Consensus       164 ~l~~~~i~  171 (369)
                      +-..+.+.
T Consensus       156 ~~NRd~l~  163 (174)
T PRK13695        156 PENRNILP  163 (174)
T ss_pred             HHHHHHHH
T ss_conf             34677559


No 221
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.14  E-value=0.0022  Score=45.08  Aligned_cols=119  Identities=18%  Similarity=0.298  Sum_probs=61.8

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH-------
Q ss_conf             7062010787988889999999996146877788665878999779999779877822245332233455566-------
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVRE-------   93 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~-------   93 (369)
                      -+..-|.||.|+||||+.=-+|..+.-+.......+                  .|-+.|.     .+||.|.       
T Consensus       241 ~q~IALVGPTGVGKTTTIAKLAArf~~~~KkVALIT------------------tDTYRIG-----AVEQLKTYAeIMgV  297 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT------------------TDHSRIG-----TVQQLQDYVKTIGF  297 (436)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEE------------------CCCCHHH-----HHHHHHHHHHHHCC
T ss_conf             717999899998889999999999861698089998------------------0663476-----99999999998499


Q ss_pred             ----------HHHHHHHHHHCCCCCEEEEECHHHCCC--CHHHHHHHHHHH-CCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             ----------555445654204652377511566480--016789999972-1221114665067543303567543332
Q 537021.9.peg.4   94 ----------IIDQIYYKPISARFRVYIMDEVQMLST--AAFNGLLKTLEE-PPPHVKFIFATTEIRKIPITVLSRCQRF  160 (369)
Q Consensus        94 ----------l~~~~~~~p~~~~~kv~iid~a~~m~~--~a~NaLLK~lEE-Pp~~~~fil~t~~~~~ll~TI~SRcq~~  160 (369)
                                +..-+..-...+++.+++||-|-+--.  ..-.-|...++. +|..+.++|.++.-.+-+.-|..|-..+
T Consensus       298 PV~VV~dp~eL~~AL~~lkdka~~DLILIDTAGRS~RD~~~I~EL~~~l~~~~p~ev~LVLSATTK~~DL~eIi~rF~~l  377 (436)
T PRK11889        298 EVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDI  377 (436)
T ss_pred             CEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCC
T ss_conf             43996888999999998763368888999298988468999999999985127771699997889989999999972579


Q ss_pred             HC
Q ss_conf             10
Q 537021.9.peg.4  161 DL  162 (369)
Q Consensus       161 ~f  162 (369)
                      .+
T Consensus       378 ~i  379 (436)
T PRK11889        378 HI  379 (436)
T ss_pred             CC
T ss_conf             98


No 222
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.14  E-value=0.0056  Score=42.09  Aligned_cols=115  Identities=18%  Similarity=0.246  Sum_probs=53.8

Q ss_pred             CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH-----HHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             767062010787988889999999996146877788665878999779-----999779877822245332233455566
Q 537021.9.peg.4   19 RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHC-----QAIIRGNHVDVVELDAASHTSIDDVRE   93 (369)
Q Consensus        19 ~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c-----~~i~~~~~~d~~e~~~~s~~~id~ir~   93 (369)
                      .-|+-.+|.||.|+||||++=-+|..+.-..   ..+..-.|.+-+..     +.+...--.+++..        .+-.+
T Consensus        73 ~~~~vI~lvG~~G~GKTTT~AKLA~~~~~~~---~kV~lia~DtyR~aA~eQLk~~a~~l~v~~~~~--------~~~~~  141 (270)
T PRK06731         73 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKK---KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV--------RDEAA  141 (270)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCC---CEEEEEEECCCCHHHHHHHHHHHHHHCCCEECC--------CCHHH
T ss_conf             9981899988898988999999999998679---908999838888889999999999819953545--------88789


Q ss_pred             HHHHHHHHHHCCCCCEEEEECHHHCCCCH--HHHHHHHHHH-CCCCCCEEEEEC
Q ss_conf             55544565420465237751156648001--6789999972-122111466506
Q 537021.9.peg.4   94 IIDQIYYKPISARFRVYIMDEVQMLSTAA--FNGLLKTLEE-PPPHVKFIFATT  144 (369)
Q Consensus        94 l~~~~~~~p~~~~~kv~iid~a~~m~~~a--~NaLLK~lEE-Pp~~~~fil~t~  144 (369)
                      +...+......+++-++|||-|-++..+.  -+-|.+.+++ .|..++|++-++
T Consensus       142 ~~~~~~~~~~~~~~DvilIDTAGR~~~d~~lm~el~~~~~~~~p~~~~Lvldas  195 (270)
T PRK06731        142 MTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAS  195 (270)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf             999999999976999999979998714699999999986063898799998687


No 223
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=97.14  E-value=0.0047  Score=42.69  Aligned_cols=86  Identities=22%  Similarity=0.368  Sum_probs=45.5

Q ss_pred             HCCCCCEEEEECHHHC-CCCH-HH---HHHHHHHHCCCCCCEEEEECCCC-----CCCHHHHHHHH-HHHCCCCCCH--H
Q ss_conf             2046523775115664-8001-67---89999972122111466506754-----33035675433-3210245400--1
Q 537021.9.peg.4  103 ISARFRVYIMDEVQML-STAA-FN---GLLKTLEEPPPHVKFIFATTEIR-----KIPITVLSRCQ-RFDLHRISIG--D  169 (369)
Q Consensus       103 ~~~~~kv~iid~a~~m-~~~a-~N---aLLK~lEEPp~~~~fil~t~~~~-----~ll~TI~SRcq-~~~f~~l~~~--~  169 (369)
                      ..|+.-+++||||..+ .-.. +.   -.|||+=.  .|+..||+|.+|+     .|.+||+.-|. ++.|+.+...  +
T Consensus       635 lDGrptli~iDEaW~~L~~~~F~~~i~~wLkT~RK--~N~~vv~aTQS~~di~~S~I~~aiie~c~T~IfLPNp~A~~~~  712 (815)
T PRK13873        635 FDGRPTLLILDEGWLALDDPVFAAQLREWLKTLRK--KNASVIFATQSLADIDDSAIAPAIIESCPTRIFLPNERAIEPQ  712 (815)
T ss_pred             HCCCCEEEEHHHHHHHHCCHHHHHHHHHHHHHHHH--CCCEEEEECCCHHHHHCCCHHHHHHHHCCEEEECCCCCCCCCH
T ss_conf             58996699758658772898999999999999987--0877999778889986496689999868856987782227700


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf             356787643101345625664456531
Q 537021.9.peg.4  170 LIELFTKILQEESIEFDPEAVAMIARA  196 (369)
Q Consensus       170 i~~~L~~i~~~E~i~~d~~~l~~ia~~  196 (369)
                      +..+-      +++..++.-+++|++.
T Consensus       713 ~~~~Y------~~fGLn~rqieiIa~a  733 (815)
T PRK13873        713 IAAIY------RRFGLNDRQIEILARA  733 (815)
T ss_pred             HHHHH------HHCCCCHHHHHHHHHC
T ss_conf             68999------8749999999999733


No 224
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892    Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=97.14  E-value=0.00024  Score=52.16  Aligned_cols=46  Identities=30%  Similarity=0.426  Sum_probs=34.1

Q ss_pred             HHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
Q ss_conf             010787988889999999996146877788665878999779999779877822245
Q 537021.9.peg.4   25 MLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELD   81 (369)
Q Consensus        25 lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~   81 (369)
                      ..+||||+||||.|+.+|+.|+...-..+           .-|.++...=.|+.|..
T Consensus         4 ~ISGpPGSGktTvA~~lA~~Lsl~~iSaG-----------~iRelA~~~Gldl~E~~   49 (173)
T TIGR02173         4 TISGPPGSGKTTVAKILAEKLSLKLISAG-----------DIRELAEKMGLDLAESK   49 (173)
T ss_pred             EEECCCCCCHHHHHHHHHHHCCCCEECCC-----------HHHHHHHHCCCCHHHHH
T ss_conf             87358968647899999986398312020-----------07889864298877734


No 225
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.08  E-value=0.01  Score=40.22  Aligned_cols=117  Identities=18%  Similarity=0.280  Sum_probs=61.7

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHH-HCCCCC-CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHH------
Q ss_conf             706201078798888999999999-614687-778866587899977999977987782224533223345556------
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARS-LNYKTA-HIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVR------   92 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~-l~c~~~-~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir------   92 (369)
                      +..+.|.||.|+||||++=-+|.. .+-+.. .....+.                  |.+.|.     .+||.|      
T Consensus       210 ~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~------------------DtyRig-----A~eQLk~Ya~il  266 (412)
T PRK05703        210 GGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITL------------------DTYRIG-----AVEQLKTYAKIM  266 (412)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEE------------------CCCCHH-----HHHHHHHHHHHC
T ss_conf             736999888887567699999999999729981799983------------------767777-----999999999971


Q ss_pred             -----------HHHHHHHHHHHCCCCCEEEEECHHHCCCCH-H-HHHHHHHHH-CCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf             -----------655544565420465237751156648001-6-789999972-12211146650675433035675433
Q 537021.9.peg.4   93 -----------EIIDQIYYKPISARFRVYIMDEVQMLSTAA-F-NGLLKTLEE-PPPHVKFIFATTEIRKIPITVLSRCQ  158 (369)
Q Consensus        93 -----------~l~~~~~~~p~~~~~kv~iid~a~~m~~~a-~-NaLLK~lEE-Pp~~~~fil~t~~~~~ll~TI~SRcq  158 (369)
                                 ++.+-+   ..-.++.+++||-|-+=..+. . .-|..+++. ||..++.+|.++.-..-+..|.+|..
T Consensus       267 gvp~~v~~~~~~l~~al---~~~~~~dlILIDTaG~s~~d~~~~~eL~~~~~~~~~~~~~LVlsat~~~~dl~~i~~~f~  343 (412)
T PRK05703        267 GIPVKVAYDPKELAKAL---EQLANCDLILIDTAGRSQRDPRLISELKALIENSKPIDVYLVLSATTKYRDLKDIVKHFS  343 (412)
T ss_pred             CCEEEEECCHHHHHHHH---HHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC
T ss_conf             97379847999999999---871589979996898897899999999999862488718999759899899999999846


Q ss_pred             HHHCC
Q ss_conf             32102
Q 537021.9.peg.4  159 RFDLH  163 (369)
Q Consensus       159 ~~~f~  163 (369)
                      .+.+.
T Consensus       344 ~~~~~  348 (412)
T PRK05703        344 RLPLD  348 (412)
T ss_pred             CCCCC
T ss_conf             79998


No 226
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=97.07  E-value=0.0024  Score=44.85  Aligned_cols=143  Identities=17%  Similarity=0.162  Sum_probs=64.2

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC----CCCCCCCHHHHHHHHHHHH
Q ss_conf             201078798888999999999614687778866587899977999977987782224----5332233455566555445
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL----DAASHTSIDDVREIIDQIY   99 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~----~~~s~~~id~ir~l~~~~~   99 (369)
                      .++.|++|+||||+++.+|....  .+.... . ...--+-.|+.+.......+.+.    -+.....++++   .....
T Consensus         3 i~i~G~aG~GKTtll~kl~~~wa--~g~~~~-~-~~~vf~~~~r~~~~~~~~sl~~ll~~~~~~~~~~~~~~---~~~~~   75 (165)
T pfam05729         3 VILQGEAGSGKTTLLQKLALLWA--QGKLPQ-D-FDFVFFLPCRELSRSGEASLADLLFSQWPEPAAPVSEV---WAVIL   75 (165)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH--CCCCCC-C-CCEEEEEEHHHHCCCCCCCHHHHHHHHCCCCCCCHHHH---HHHHH
T ss_conf             99982798989999999999998--698436-9-72899999567077766899999998767745763789---99998


Q ss_pred             HHHHCCCCCEEEEECHHHCCCC--------HHHH-HHHHHHHC-CCCCCEEEEECCCCCC--CHHHHHHHHHHHCCCCCC
Q ss_conf             6542046523775115664800--------1678-99999721-2211146650675433--035675433321024540
Q 537021.9.peg.4  100 YKPISARFRVYIMDEVQMLSTA--------AFNG-LLKTLEEP-PPHVKFIFATTEIRKI--PITVLSRCQRFDLHRISI  167 (369)
Q Consensus       100 ~~p~~~~~kv~iid~a~~m~~~--------a~Na-LLK~lEEP-p~~~~fil~t~~~~~l--l~TI~SRcq~~~f~~l~~  167 (369)
                         ...+.=++|+|..|.+..+        .... |...+... -+++ .+++|+.|...  ++-....-+++.....++
T Consensus        76 ---~~~~k~L~ilDGlDE~~~~~~~~~~~~~~~~~l~~ll~~~~lp~~-~vliTsRp~~~~~l~~~~~~~~~~ei~GFs~  151 (165)
T pfam05729        76 ---ELPERVLLILDGLDELASDLGQLDGPLPVLTLLSSLLRKKLLPGA-SLLLTSRPDALRDLRRGLEEPRYLEVLGFSE  151 (165)
T ss_pred             ---HCCCCEEEEECCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCC-EEEEEECCCHHHHHHHHCCCCCEEEECCCCH
T ss_conf             ---397728999648455144435644457799999999841527886-4999968037988577648871899889999


Q ss_pred             HHHHHHHHHH
Q ss_conf             0135678764
Q 537021.9.peg.4  168 GDLIELFTKI  177 (369)
Q Consensus       168 ~~i~~~L~~i  177 (369)
                      +++.+|+.+-
T Consensus       152 ~~~~~yi~~~  161 (165)
T pfam05729       152 EDRKQYVRKY  161 (165)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999986


No 227
>KOG0732 consensus
Probab=97.06  E-value=0.0024  Score=44.81  Aligned_cols=132  Identities=18%  Similarity=0.185  Sum_probs=69.3

Q ss_pred             CHHHHHHHHHHHHHC----------CC--CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             848999999999982----------87--670620107879888899999999961468777886658789997799997
Q 537021.9.peg.4    3 GQKPMIKTLTNAFKS----------GR--IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAII   70 (369)
Q Consensus         3 Gq~~~~~~l~~~~~~----------~~--~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~   70 (369)
                      |=++++..|+..|-.          -+  -|-..||+||||+|||..||++|.++  ......             ..+.
T Consensus       269 gl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~--s~~~~k-------------isff  333 (1080)
T KOG0732         269 GLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAAC--SRGNRK-------------ISFF  333 (1080)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHH--CCCCCC-------------CCHH
T ss_conf             5788899999988767640567641266898632302899872568888666540--541102-------------0244


Q ss_pred             CCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC-----CCHH------HHHHHHHHHCC--C
Q ss_conf             79877822--24533223345556655544565420465237751156648-----0016------78999997212--2
Q 537021.9.peg.4   71 RGNHVDVV--ELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS-----TAAF------NGLLKTLEEPP--P  135 (369)
Q Consensus        71 ~~~~~d~~--e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~-----~~a~------NaLLK~lEEPp--~  135 (369)
                      ...+.|..  ++.-+    =.|.|.+-+.++..    .+-|+.+|+.|.+-     ++.|      -.||-.|--=+  +
T Consensus       334 mrkgaD~lskwvgEa----ERqlrllFeeA~k~----qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRg  405 (1080)
T KOG0732         334 MRKGADCLSKWVGEA----ERQLRLLFEEAQKT----QPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRG  405 (1080)
T ss_pred             HHCCCHHHCCCCCCH----HHHHHHHHHHHHCC----CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             314844332544757----78899889887444----8517730555664656536677744567777887604777778


Q ss_pred             CCCEEEEECCCCCCCHHHHHHH
Q ss_conf             1114665067543303567543
Q 537021.9.peg.4  136 HVKFIFATTEIRKIPITVLSRC  157 (369)
Q Consensus       136 ~~~fil~t~~~~~ll~TI~SRc  157 (369)
                      .|+.|-+|+.|+.+=|..|=+-
T Consensus       406 qVvvigATnRpda~dpaLRRPg  427 (1080)
T KOG0732         406 QVVVIGATNRPDAIDPALRRPG  427 (1080)
T ss_pred             CEEEECCCCCCCCCCHHHCCCC
T ss_conf             6589715678332465442886


No 228
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.05  E-value=0.00041  Score=50.51  Aligned_cols=116  Identities=22%  Similarity=0.295  Sum_probs=64.7

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHH-----HHH
Q ss_conf             706201078798888999999999614687778866587899977999977987782224533223345556-----655
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVR-----EII   95 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir-----~l~   95 (369)
                      +.||+.-|+.|+||||+++.||+.|.|.--+.+.     .-.-.+-.+|..|.-.            -|+-|     .|.
T Consensus         3 ~~a~VVmGVsGsGKSTvg~~LA~~L~~~fiegDd-----~Hp~~Ni~KM~~GiPL------------~D~DR~pWL~~l~   65 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDD-----LHPAKNIDKMSQGIPL------------TDEDRLPWLERLN   65 (176)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHCCCEECCCC-----CCCHHHHHHHHCCCCC------------CHHHHHHHHHHHH
T ss_conf             8579998289899899999999995987762344-----3789899998689998------------8667999999999


Q ss_pred             HHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             54456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4   96 DQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF  160 (369)
Q Consensus        96 ~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~  160 (369)
                      +.+. .-...+.-+++.-.|  |.+.    -+..|-.-.+++.|+.+.-+.+-|..-+..|--||
T Consensus        66 ~~~~-~~~~~~~~~VvaCSA--LK~~----YRd~Lr~~~~~v~fv~L~g~~~~i~~Rl~~R~gHF  123 (176)
T PRK09825         66 DASY-SLYKKNETGFIVCSS--LKKQ----YRDILRKSSPNVHFLWLDGDYETILARMQRRAGHF  123 (176)
T ss_pred             HHHH-HHHHCCCCEEEEEHH--HHHH----HHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCCCC
T ss_conf             9999-999649982997188--6799----99999747998799997189999999997460379


No 229
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=97.04  E-value=0.0069  Score=41.45  Aligned_cols=129  Identities=18%  Similarity=0.185  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHH-HHHHHHCCCCCCCC-CCCCCCCC--CCHHHHHHHCCCCCCC----
Q ss_conf             9999999999828767062010787988889999-99999614687778-86658789--9977999977987782----
Q 537021.9.peg.4    6 PMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTAR-IIARSLNYKTAHID-VPTVEFEG--FGEHCQAIIRGNHVDV----   77 (369)
Q Consensus         6 ~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~-~~A~~l~c~~~~~~-~~~~~~c~--~c~~c~~i~~~~~~d~----   77 (369)
                      .+...|.+++.++.   ..++.||+|+||||..= .|...    ..... ..|.+|--  -+.-.+++.....-.+    
T Consensus         8 ~~~~~i~~~l~~~~---~~vl~a~tGsGKtTqvP~~ll~~----~~~~g~I~~~qPRR~AA~s~A~RvA~e~~e~~G~~V   80 (812)
T PRK11664          8 AVLPELLTALKTAP---QVLLKAPTGAGKSTWLPLQLLQQ----GGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV   80 (812)
T ss_pred             HHHHHHHHHHHHCC---EEEEEECCCCCHHHHHHHHHHHC----CCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf             89999999999799---79999089999899999999964----688993899388399999999999997299999867


Q ss_pred             -CCCCCCC----CCCHHHH--HHHHHHHHHHHHCCCCCEEEEECHHH--CCCCHHHHHHHHH-HHCCCCCCEEE
Q ss_conf             -2245332----2334555--66555445654204652377511566--4800167899999-72122111466
Q 537021.9.peg.4   78 -VELDAAS----HTSIDDV--REIIDQIYYKPISARFRVYIMDEVQM--LSTAAFNGLLKTL-EEPPPHVKFIF  141 (369)
Q Consensus        78 -~e~~~~s----~~~id~i--r~l~~~~~~~p~~~~~kv~iid~a~~--m~~~a~NaLLK~l-EEPp~~~~fil  141 (369)
                       +.+...+    +++|.=+  --+...+..-|.-.+|-++||||+|-  ++.+-.=+|++-+ ..--++...|+
T Consensus        81 GY~vR~e~~~s~~Tri~~~T~GiLlr~l~~dp~L~~~~~vI~DE~HER~l~~Dl~l~l~~~~~~~~r~dLklvv  154 (812)
T PRK11664         81 GYRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLI  154 (812)
T ss_pred             EEEECCCCCCCCCCEEEEECHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             57825677889985799975589999972497767788899957546875189999999999986189828999


No 230
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.00  E-value=0.0063  Score=41.73  Aligned_cols=133  Identities=19%  Similarity=0.249  Sum_probs=65.6

Q ss_pred             CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCC-CCCCCCCCC------------CC
Q ss_conf             76706201078798888999999999614687778866587899977999977987-782224533------------22
Q 537021.9.peg.4   19 RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNH-VDVVELDAA------------SH   85 (369)
Q Consensus        19 ~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~-~d~~e~~~~------------s~   85 (369)
                      +.++-...+||||+||||++.-+|..|--..-       ..+|-  -|..+..|.+ .-+.-+|-+            |.
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~-------kvgGf--~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~   73 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGY-------KVGGF--ITPEVREGGKRIGFKIVDLATGEEGILARVGFSR   73 (179)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC-------EEEEE--EEEEEECCCEEEEEEEEECCCCCEEEEEECCCCC
T ss_conf             75459998679984589999999999985596-------65139--8311420882751599981479557988847887


Q ss_pred             C-----C--HHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC---CCCCEEEEECCCCCCCHHHHH
Q ss_conf             3-----3--45556655544565420465237751156648001678999997212---211146650675433035675
Q 537021.9.peg.4   86 T-----S--IDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP---PHVKFIFATTEIRKIPITVLS  155 (369)
Q Consensus        86 ~-----~--id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp---~~~~fil~t~~~~~ll~TI~S  155 (369)
                      .     +  +|..-++...+-.+..+. -.|+||||.-.| .-..+.+.+.+||--   ..+++.+--.+-+-++.-|++
T Consensus        74 ~rvGkY~V~v~~le~i~~~al~rA~~~-aDvIIIDEIGpM-Elks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik~  151 (179)
T COG1618          74 PRVGKYGVNVEGLEEIAIPALRRALEE-ADVIIIDEIGPM-ELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRIKK  151 (179)
T ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHC-CCEEEEECCCCH-HHCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH
T ss_conf             621047862788899868999988634-998999433633-020088999999996589937999962567758998642


Q ss_pred             HHHHHHC
Q ss_conf             4333210
Q 537021.9.peg.4  156 RCQRFDL  162 (369)
Q Consensus       156 Rcq~~~f  162 (369)
                      +--.+-|
T Consensus       152 ~~~v~v~  158 (179)
T COG1618         152 LGGVYVF  158 (179)
T ss_pred             CCCEEEE
T ss_conf             4877999


No 231
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.00  E-value=0.0076  Score=41.14  Aligned_cols=60  Identities=13%  Similarity=0.138  Sum_probs=39.2

Q ss_pred             CCCCEEEEECHHHCCCCH-HHHHHHHHHH--CCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf             465237751156648001-6789999972--12211146650675433035675433321024
Q 537021.9.peg.4  105 ARFRVYIMDEVQMLSTAA-FNGLLKTLEE--PPPHVKFIFATTEIRKIPITVLSRCQRFDLHR  164 (369)
Q Consensus       105 ~~~kv~iid~a~~m~~~a-~NaLLK~lEE--Pp~~~~fil~t~~~~~ll~TI~SRcq~~~f~~  164 (369)
                      .++.+++||-|-+=..+. ..-.++.|.+  +|-.++.+|.+|....-+.-|..|...+.+..
T Consensus       253 ~~~dlILIDTaGrs~rD~~~~e~l~~l~~~~~~~~~~LVLsat~~~~dl~~i~~~f~~~~~~~  315 (404)
T PRK06995        253 RNKHIVLIDTVGMSQRDRMVSEQIAMLHGAGAPVQRLLLLNATSHGDTLNEVVQAYRGPGLAG  315 (404)
T ss_pred             CCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCE
T ss_conf             899999980999897688899999999735788528999779899999999999844699983


No 232
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.99  E-value=0.0027  Score=44.48  Aligned_cols=49  Identities=31%  Similarity=0.510  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHCCCCCEEEEECHHH--CCCCHHHHHHHH-HHHCCCCCCEEEE
Q ss_conf             555445654204652377511566--480016789999-9721221114665
Q 537021.9.peg.4   94 IIDQIYYKPISARFRVYIMDEVQM--LSTAAFNGLLKT-LEEPPPHVKFIFA  142 (369)
Q Consensus        94 l~~~~~~~p~~~~~kv~iid~a~~--m~~~a~NaLLK~-lEEPp~~~~fil~  142 (369)
                      |...+..-|.-.+|-++||||||-  ++.+-.=+|||- +..-++....|+.
T Consensus       150 Llrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIim  201 (845)
T COG1643         150 LLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIM  201 (845)
T ss_pred             HHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             9999843802045877997013355688899999999998646887059997


No 233
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.97  E-value=0.0054  Score=42.23  Aligned_cols=41  Identities=24%  Similarity=0.340  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHCC-CCCEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             9999999999828-7670620107879888899999999961
Q 537021.9.peg.4    6 PMIKTLTNAFKSG-RIAQSYMLSGTRGIGKTTTARIIARSLN   46 (369)
Q Consensus         6 ~~~~~l~~~~~~~-~~~ha~lf~G~~G~GK~~~a~~~A~~l~   46 (369)
                      .+++..++.+.+= .-...++|+|++|+|||-+|-+.|++|.
T Consensus       167 ~i~~~~~~fi~~F~~~~~nLlf~G~~G~GKTfLa~~IA~ell  208 (330)
T PRK06835        167 NILEKCLNFIKNFDKNNENLLFYGNTGTGKTFLSNCIAKELL  208 (330)
T ss_pred             HHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             999999999872478888669889999988999999999999


No 234
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.96  E-value=0.0016  Score=46.09  Aligned_cols=51  Identities=20%  Similarity=0.173  Sum_probs=35.5

Q ss_pred             CCCCEEEEECH-HHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf             46523775115-664800167899999721221114665067543303567543
Q 537021.9.peg.4  105 ARFRVYIMDEV-QMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRC  157 (369)
Q Consensus       105 ~~~kv~iid~a-~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRc  157 (369)
                      -+.|++++||| ..|-++....|.-.+.+-=+.+.+|-+++.+.  +++-.+|+
T Consensus       532 ~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~t--l~~~h~~~  583 (604)
T COG4178         532 HKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPT--LWNFHSRQ  583 (604)
T ss_pred             CCCCEEEEECCHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCHH--HHHHHHHH
T ss_conf             09998998060112595789999999985489978999556000--57887543


No 235
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.95  E-value=0.00095  Score=47.79  Aligned_cols=46  Identities=30%  Similarity=0.512  Sum_probs=37.6

Q ss_pred             CCCHHHHHHH----HHHHHHCCC---------CCEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             9284899999----999998287---------670620107879888899999999961
Q 537021.9.peg.4    1 MIGQKPMIKT----LTNAFKSGR---------IAQSYMLSGTRGIGKTTTARIIARSLN   46 (369)
Q Consensus         1 iiGq~~~~~~----l~~~~~~~~---------~~ha~lf~G~~G~GK~~~a~~~A~~l~   46 (369)
                      ||||+.+++.    |+|-+++.+         .|...|.-||.|+|||-.||.+|+-.+
T Consensus        17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~   75 (444)
T COG1220          17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAG   75 (444)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             40717778899999998999975478776225755358888888768899999999848


No 236
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.93  E-value=0.0039  Score=43.26  Aligned_cols=23  Identities=48%  Similarity=0.645  Sum_probs=18.9

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             20107879888899999999961
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLN   46 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~   46 (369)
                      .+|.||+|+||||+.--+|..+.
T Consensus         3 i~lvGptGvGKTTTiaKLA~~~~   25 (173)
T cd03115           3 ILLVGLQGVGKTTTAAKLALYLK   25 (173)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
T ss_conf             99989999988999999999999


No 237
>KOG0651 consensus
Probab=96.92  E-value=0.0044  Score=42.88  Aligned_cols=110  Identities=22%  Similarity=0.295  Sum_probs=60.1

Q ss_pred             CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             76706201078798888999999999614687778866587899977999977987782224533223345556655544
Q 537021.9.peg.4   19 RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQI   98 (369)
Q Consensus        19 ~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~   98 (369)
                      +.|...++|||||+|||-+|++.|+.+-|.--....            ..+..++      + +.   +---||+.-..+
T Consensus       164 k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~s------------s~lv~ky------i-GE---saRlIRemf~yA  221 (388)
T KOG0651         164 KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVS------------SALVDKY------I-GE---SARLIRDMFRYA  221 (388)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEH------------HHHHHHH------C-CC---HHHHHHHHHHHH
T ss_conf             788256876799986459999999865985477447------------6663300------2-65---788999999778


Q ss_pred             HHHHHCCCCCEEEEECHHHC-----CCCHHH------HHHHHHHH-----CCCCCCEEEEECCCCCCCHHHH
Q ss_conf             56542046523775115664-----800167------89999972-----1221114665067543303567
Q 537021.9.peg.4   99 YYKPISARFRVYIMDEVQML-----STAAFN------GLLKTLEE-----PPPHVKFIFATTEIRKIPITVL  154 (369)
Q Consensus        99 ~~~p~~~~~kv~iid~a~~m-----~~~a~N------aLLK~lEE-----Pp~~~~fil~t~~~~~ll~TI~  154 (369)
                      +-.   - .=|+.|||.|..     |+.+.|      .|.-.+.+     --..|..|.+|+.|+-|=|++.
T Consensus       222 ~~~---~-pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLl  289 (388)
T KOG0651         222 REV---I-PCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALL  289 (388)
T ss_pred             HHH---C-CEEEEEHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCEEEECCCCCCCCHHHC
T ss_conf             652---7-5577510123114577335552059999999999874214012066317985388665665542


No 238
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.87  E-value=0.012  Score=39.72  Aligned_cols=37  Identities=27%  Similarity=0.355  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             9999999999828767062010787988889999999996
Q 537021.9.peg.4    6 PMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus         6 ~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      .+...|+.+|+.++   ..+++|+.|+||||++++++..+
T Consensus       148 ~~~~fL~~aV~~r~---NilI~G~TgSGKTTll~aL~~~i  184 (332)
T PRK13900        148 KIKEFLEHAVISKK---NIIISGGTSTGKTTFTNAALREI  184 (332)
T ss_pred             HHHHHHHHHHHCCC---CEEEECCCCCCHHHHHHHHHHCC
T ss_conf             79999999986487---19998888988999999998358


No 239
>pfam09848 DUF2075 Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.
Probab=96.82  E-value=0.0012  Score=46.93  Aligned_cols=106  Identities=24%  Similarity=0.238  Sum_probs=51.5

Q ss_pred             EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC--CCCCCC---HHHHHHHHH
Q ss_conf             062010787988889999999996146877788665878999779999779877822245--332233---455566555
Q 537021.9.peg.4   22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELD--AASHTS---IDDVREIID   96 (369)
Q Consensus        22 ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~--~~s~~~---id~ir~l~~   96 (369)
                      +-++.+|-||+|||-+|.-+...|. .......            ..+..+|||=+..+-  -+.+.+   ....+....
T Consensus         2 ~v~~V~G~pGtGKTvv~l~l~~~l~-~~~~~~~------------~~~l~~N~~~~~~l~~~l~~~~~~~~~~~~~~~~~   68 (348)
T pfam09848         2 AVFLVTGGPGTGKTVVALNLFAELS-DSDLGRT------------AVFLSGNHPLVLVLYEALAGDLKVRKKKLFRKPTS   68 (348)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH-HCCCCCC------------EEEEECCHHHHHHHHHHHHHHCCHHHCCCCCCCHH
T ss_conf             7999977799389999999999986-4402682------------08995786699999999860412001020007252


Q ss_pred             HHH-HHHHCCCCCEEEEECHHHCCCC--------HHHHHHHHHHHCCCCCCEEE
Q ss_conf             445-6542046523775115664800--------16789999972122111466
Q 537021.9.peg.4   97 QIY-YKPISARFRVYIMDEVQMLSTA--------AFNGLLKTLEEPPPHVKFIF  141 (369)
Q Consensus        97 ~~~-~~p~~~~~kv~iid~a~~m~~~--------a~NaLLK~lEEPp~~~~fil  141 (369)
                      +++ .......+.|+|+||||+|...        ..|-|..++.-- .-++|++
T Consensus        69 fi~~~~~~~~~~dvvivDEAhRl~~k~~~~~~~~~~~ql~~i~~~a-~v~V~~~  121 (348)
T pfam09848        69 FINNLHKAPPHEDVVIVDEAHRLWTKSDLYFNFSGPNQLDEIMKRA-KVVVFFI  121 (348)
T ss_pred             HHCCCCCCCCCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHC-CEEEEEE
T ss_conf             3165235798677899831786654336556778579999999752-8599998


No 240
>pfam05707 Zot Zonular occludens toxin (Zot). This family consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophages present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers
Probab=96.79  E-value=0.0017  Score=45.92  Aligned_cols=65  Identities=14%  Similarity=0.150  Sum_probs=46.1

Q ss_pred             CEEEEECHHHC-CCCHHH----HHHHHHHHCC-CCCCEEEEECCCCCCCHHHHHHHH-HHHCCCCCCHHHHH
Q ss_conf             23775115664-800167----8999997212-211146650675433035675433-32102454001356
Q 537021.9.peg.4  108 RVYIMDEVQML-STAAFN----GLLKTLEEPP-PHVKFIFATTEIRKIPITVLSRCQ-RFDLHRISIGDLIE  172 (369)
Q Consensus       108 kv~iid~a~~m-~~~a~N----aLLK~lEEPp-~~~~fil~t~~~~~ll~TI~SRcq-~~~f~~l~~~~i~~  172 (369)
                      -++|||||++. +..+.+    ..+..+++-- -+.=|||+|.+|..|-..||.+|. ++++++.+.-.+..
T Consensus        72 ~liViDE~~~~~~~r~~~~~~~~~i~~l~~HRH~G~DiiliTQ~~~~id~~ir~lve~~~~~~r~~~~g~~~  143 (183)
T pfam05707        72 ALLVIDEAQTWFPSRRGGDKVPPVLDAFSTHRHLGWDIILITQNPSKIDKQIRALVEHHVHCRRLTALGIKG  143 (183)
T ss_pred             CEEEEECCHHHCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCEEEEEEECCCCCCCC
T ss_conf             799998976554887778888389999998077882089991897997299998614899999533468863


No 241
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.77  E-value=0.0087  Score=40.67  Aligned_cols=115  Identities=17%  Similarity=0.290  Sum_probs=58.8

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHHH--CCCCCC--CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHH----
Q ss_conf             7062010787988889999999996--146877--78866587899977999977987782224533223345556----
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARSL--NYKTAH--IDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVR----   92 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~l--~c~~~~--~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir----   92 (369)
                      +.-+.|.||.|+||||+.--+|..+  +-....  ....+                  .|.+.+.     .+||.|    
T Consensus       174 ~~vi~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit------------------~DtyRig-----AveQLktya~  230 (388)
T PRK12723        174 KRIFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIIT------------------IDNYRIG-----AKKQIQTYGD  230 (388)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE------------------ECCCCHH-----HHHHHHHHHH
T ss_conf             6289998998875787999999999986267677379998------------------0787588-----9999999999


Q ss_pred             -------------HHHHHHHHHHHCCCCCEEEEECHHHCCCCHH--HHHHHHHHHC-C-CCCCEEEEECCCCCCCHHHHH
Q ss_conf             -------------6555445654204652377511566480016--7899999721-2-211146650675433035675
Q 537021.9.peg.4   93 -------------EIIDQIYYKPISARFRVYIMDEVQMLSTAAF--NGLLKTLEEP-P-PHVKFIFATTEIRKIPITVLS  155 (369)
Q Consensus        93 -------------~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~--NaLLK~lEEP-p-~~~~fil~t~~~~~ll~TI~S  155 (369)
                                   ++.+-+.   ...++.+++||-|-+...+..  +-|-+.++.- | ..+.+++.++.-..-+..|..
T Consensus       231 il~vp~~v~~~~~dl~~~l~---~~~~~D~IlIDTAGrs~~d~~~~~el~~~~~~~~~~~~~~Lvlsat~~~~d~~~i~~  307 (388)
T PRK12723        231 IMGIPVKAIESFKDLKEEIT---QSKDFDLVLIDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDIKEIFH  307 (388)
T ss_pred             HHCCCEEEECCHHHHHHHHH---HHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf             97880698578899999999---724999999958998856899999999999741898459999879899999999999


Q ss_pred             HHHHHH
Q ss_conf             433321
Q 537021.9.peg.4  156 RCQRFD  161 (369)
Q Consensus       156 Rcq~~~  161 (369)
                      |-..+.
T Consensus       308 ~f~~~~  313 (388)
T PRK12723        308 QFSPFS  313 (388)
T ss_pred             HHCCCC
T ss_conf             842799


No 242
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.77  E-value=0.0052  Score=42.31  Aligned_cols=141  Identities=21%  Similarity=0.213  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             89999999999828767062010787988889999999996146877788665878999779999779877822245332
Q 537021.9.peg.4    5 KPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAAS   84 (369)
Q Consensus         5 ~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s   84 (369)
                      +++++..--++-.|  -| .++.||||+||+.+||.++.++ +....+             -..+...+-|+  |+-   
T Consensus        26 e~~i~l~lLaalag--eh-vlllGPPGtAKS~larrl~~~~-~~a~~F-------------eyLltRFstPe--ElF---   83 (498)
T PRK13531         26 SHAIRLCLLAALSG--ES-VFLLGPPGIAKSLIARRLKFAF-QHARAF-------------EYLMTRFSTPE--EVF---   83 (498)
T ss_pred             HHHHHHHHHHHHCC--CC-EEEECCCCHHHHHHHHHHHHHH-CCCHHH-------------HHHHHCCCCHH--HHC---
T ss_conf             99999999999728--94-6988899513889999999985-574089-------------99987469888--853---


Q ss_pred             CCCHHHHHHHHHH-HHHHHHCC---CCCEEEEECHHHCCCCHHHHHHHHHHHCC----------CCCCEEEEECC-CC--
Q ss_conf             2334555665554-45654204---65237751156648001678999997212----------21114665067-54--
Q 537021.9.peg.4   85 HTSIDDVREIIDQ-IYYKPISA---RFRVYIMDEVQMLSTAAFNGLLKTLEEPP----------PHVKFIFATTE-IR--  147 (369)
Q Consensus        85 ~~~id~ir~l~~~-~~~~p~~~---~~kv~iid~a~~m~~~a~NaLLK~lEEPp----------~~~~fil~t~~-~~--  147 (369)
                        |==+|+.+.+. -..+-++|   .--|.++||.-+-|..--|+||-.|-|--          +-..+|-++++ |+  
T Consensus        84 --GP~si~~Lk~~g~y~R~t~G~LP~A~iaFLDEIfKansAILNtLLtilNEr~f~nG~~~~~vPL~~li~ASNElP~~~  161 (498)
T PRK13531         84 --GPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVAASNELPEAD  161 (498)
T ss_pred             --CCCCHHHHHHCCEEEEECCCCCCCCEEEHHHHHHHCCHHHHHHHHHHHHHHEECCCCCEECCCHHHHHHCCCCCCCCC
T ss_conf             --833299871178489722675886613157878614889999999986464034798313044688643046799998


Q ss_pred             CCCHHHHHHHH-HHHCCCCCCHH
Q ss_conf             33035675433-32102454001
Q 537021.9.peg.4  148 KIPITVLSRCQ-RFDLHRISIGD  169 (369)
Q Consensus       148 ~ll~TI~SRcq-~~~f~~l~~~~  169 (369)
                      .=+..+--|.. ++...++....
T Consensus       162 ~~L~AlyDRfL~R~~v~~v~~~~  184 (498)
T PRK13531        162 SSLEALYDRMLIRLWLDKVQDKA  184 (498)
T ss_pred             CCHHHHHHHHHHHEECCCCCCHH
T ss_conf             40788887644102231316766


No 243
>PRK03839 putative kinase; Provisional
Probab=96.75  E-value=0.004  Score=43.16  Aligned_cols=26  Identities=38%  Similarity=0.754  Sum_probs=22.2

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             20107879888899999999961468
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLNYKT   49 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~c~~   49 (369)
                      .+++|.||+||||+|+.||+.+.+..
T Consensus         3 I~ITGTPGtGKTTva~~La~~lg~~~   28 (180)
T PRK03839          3 IAITGTPGVGKTTISKLLAEKLGYEY   28 (180)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCEE
T ss_conf             99978999998999999999769879


No 244
>KOG0922 consensus
Probab=96.72  E-value=0.0056  Score=42.11  Aligned_cols=133  Identities=25%  Similarity=0.393  Sum_probs=61.3

Q ss_pred             HHHHHHHHCCCCCEEEHHCCCCCCCHHHHH-HHHHHHHCCCCCCCCCCCCCCCC-CCHH-HHHHHC--CCCC--CC-CCC
Q ss_conf             999999982876706201078798888999-99999961468777886658789-9977-999977--9877--82-224
Q 537021.9.peg.4    9 KTLTNAFKSGRIAQSYMLSGTRGIGKTTTA-RIIARSLNYKTAHIDVPTVEFEG-FGEH-CQAIIR--GNHV--DV-VEL   80 (369)
Q Consensus         9 ~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a-~~~A~~l~c~~~~~~~~~~~~c~-~c~~-c~~i~~--~~~~--d~-~e~   80 (369)
                      ..|-.++++++   -.+..|+.|+||+|=. ..++.+-.+..+..  -|..|-- -|-+ .++++.  |.-.  +| +-|
T Consensus        57 ~~il~~ve~nq---vlIviGeTGsGKSTQipQyL~eaG~~~~g~I--~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~I  131 (674)
T KOG0922          57 DQILYAVEDNQ---VLIVIGETGSGKSTQIPQYLAEAGFASSGKI--ACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTI  131 (674)
T ss_pred             HHHHHHHHHCC---EEEEECCCCCCCCCCHHHHHHHCCCCCCCCE--EEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf             99999998787---7999848989853327699986265668827--750671677888999999985897676222699


Q ss_pred             ---CCCC-CCCH----HHHHHHHHHHHHHHHCCCCCEEEEECHH--HCCCCHHHHHHHH-HHHCCCCCCEEE-EECCCCC
Q ss_conf             ---5332-2334----5556655544565420465237751156--6480016789999-972122111466-5067543
Q 537021.9.peg.4   81 ---DAAS-HTSI----DDVREIIDQIYYKPISARFRVYIMDEVQ--MLSTAAFNGLLKT-LEEPPPHVKFIF-ATTEIRK  148 (369)
Q Consensus        81 ---~~~s-~~~i----d~ir~l~~~~~~~p~~~~~kv~iid~a~--~m~~~a~NaLLK~-lEEPp~~~~fil-~t~~~~~  148 (369)
                         |..| .++|    |-  -|+..+-.-|.-.+|-|+||||||  .++++--=+|||- +.+.|+--++|. +|-+.++
T Consensus       132 RFed~ts~~TrikymTDG--~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimSATlda~k  209 (674)
T KOG0922         132 RFEDSTSKDTRIKYMTDG--MLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMSATLDAEK  209 (674)
T ss_pred             EECCCCCCCEEEEEECCH--HHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECHHH
T ss_conf             845667873369996135--999988508764544489983223101578899999999873277836999923524899


No 245
>KOG0729 consensus
Probab=96.72  E-value=0.0038  Score=43.30  Aligned_cols=126  Identities=22%  Similarity=0.306  Sum_probs=67.6

Q ss_pred             CHHHHHHHHHHHHH-----------CC-CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             84899999999998-----------28-7670620107879888899999999961468777886658789997799997
Q 537021.9.peg.4    3 GQKPMIKTLTNAFK-----------SG-RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAII   70 (369)
Q Consensus         3 Gq~~~~~~l~~~~~-----------~~-~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~   70 (369)
                      |-..-++.|+.-++           -| .-|...|++||||+|||.+||+.|..-            ++|=.---.....
T Consensus       181 GCKeqIEklREVVE~PlL~PErfv~LGIdPPKGvllyGPPGtGKTL~ARAVANRT------------dAcFIRViGSELV  248 (435)
T KOG0729         181 GCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT------------DACFIRVIGSELV  248 (435)
T ss_pred             CHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCC------------CCEEEEEHHHHHH
T ss_conf             6699999999988432558888875278998733786899986108999874566------------7458763118999


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC-------CCHHHHHHHHHHH---------CC
Q ss_conf             7987782224533223345556655544565420465237751156648-------0016789999972---------12
Q 537021.9.peg.4   71 RGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS-------TAAFNGLLKTLEE---------PP  134 (369)
Q Consensus        71 ~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~-------~~a~NaLLK~lEE---------Pp  134 (369)
                      ..      ++ +   -|.--+|+|.+-+.-+    +-=|+++||.|..-       ...-|-.-+||=|         |-
T Consensus       249 QK------Yv-G---EGARMVRElFeMAr~K----KACiiFFDEiDAiGGaRFDDg~ggDNEVQRTMLEli~QLDGFDpR  314 (435)
T KOG0729         249 QK------YV-G---EGARMVRELFEMARTK----KACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR  314 (435)
T ss_pred             HH------HH-H---HHHHHHHHHHHHHCCC----CEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf             99------86-2---4689999999985236----527998410102267203578887279999999999860377888


Q ss_pred             CCCCEEEEECCCCCCCHHHH
Q ss_conf             21114665067543303567
Q 537021.9.peg.4  135 PHVKFIFATTEIRKIPITVL  154 (369)
Q Consensus       135 ~~~~fil~t~~~~~ll~TI~  154 (369)
                      .|....++|+.|+-|=|.+.
T Consensus       315 GNIKVlmATNRPdtLDpALl  334 (435)
T KOG0729         315 GNIKVLMATNRPDTLDPALL  334 (435)
T ss_pred             CCEEEEEECCCCCCCCHHHC
T ss_conf             87589863489887687662


No 246
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=96.68  E-value=0.027  Score=37.10  Aligned_cols=58  Identities=21%  Similarity=0.289  Sum_probs=31.8

Q ss_pred             CCCCCEEEHHCCCCCCCHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf             28767062010787988889999999996-14687778866587899977999977987782
Q 537021.9.peg.4   17 SGRIAQSYMLSGTRGIGKTTTARIIARSL-NYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV   77 (369)
Q Consensus        17 ~~~~~ha~lf~G~~G~GK~~~a~~~A~~l-~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~   77 (369)
                      .+.++| -+..||.|.|||++--.++... -+.....  -..+--..|....+...|.|-|+
T Consensus       453 ~~dvGH-tlIiGpTGsGKTvll~fl~aq~~ky~~~~v--f~FDKd~s~~i~~~a~GG~y~~l  511 (818)
T PRK13830        453 VDDVGH-TLIFGPTGSGKSTLLALIAAQFRRYAGAQI--FAFDKGRSMLPLTLAAGGDHYEI  511 (818)
T ss_pred             CCCCCE-EEEECCCCCCHHHHHHHHHHHHHHCCCCEE--EEECCCCCHHHHHHHHCCEEEEE
T ss_conf             898650-589899999889999999999864279838--99748876899999809925873


No 247
>KOG1051 consensus
Probab=96.66  E-value=0.016  Score=38.64  Aligned_cols=167  Identities=19%  Similarity=0.242  Sum_probs=95.2

Q ss_pred             CCCH--HHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
Q ss_conf             9284--89999999999828767062010787988889999999996146877788665878999779999779877822
Q 537021.9.peg.4    1 MIGQ--KPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVV   78 (369)
Q Consensus         1 iiGq--~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~   78 (369)
                      ++|.  +.+...+.-..+..+ .+ .++.|.+|+||+.++.-+|+.+                        ..|--|+..
T Consensus       188 vigr~deeirRvi~iL~Rr~k-~N-PvLVG~~gvgktaiv~gla~ri------------------------~~G~vp~~l  241 (898)
T KOG1051         188 VIGRHDEEIRRVIEILSRKTK-NN-PVLVGEPGVGKTAIVEGLAQRI------------------------ATGDVPETL  241 (898)
T ss_pred             CCCCCHHHHHHHHHHHHCCCC-CC-CEEEECCCCCCHHHHHHHHHHH------------------------HCCCCCCCC
T ss_conf             658852889999999814678-99-6698368777216899999876------------------------617888533


Q ss_pred             C------------CCCCCCCC-H-HHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHH-------HHHHHHHHCCCCC
Q ss_conf             2------------45332233-4-555665554456542046523775115664800167-------8999997212211
Q 537021.9.peg.4   79 E------------LDAASHTS-I-DDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFN-------GLLKTLEEPPPHV  137 (369)
Q Consensus        79 e------------~~~~s~~~-i-d~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~N-------aLLK~lEEPp~~~  137 (369)
                      .            ++++...+ + +.++++.+.+.-   .|+--|..|||.|.+..+..|       .+||.+.--.. .
T Consensus       242 ~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~---~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~rg~-l  317 (898)
T KOG1051         242 KDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVES---GGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLARGG-L  317 (898)
T ss_pred             CCCCEEEEEHHHCCCCCCCCHHHHHHHHHHHHHHHC---CCCCEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHCCC-E
T ss_conf             455248987000035864212788999999999854---798689983214322048874118999986588885597-4


Q ss_pred             CEEEEECCCC--CC---CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHHCC
Q ss_conf             1466506754--33---0356754333210245400135678764310----13456256644565316
Q 537021.9.peg.4  138 KFIFATTEIR--KI---PITVLSRCQRFDLHRISIGDLIELFTKILQE----ESIEFDPEAVAMIARAS  197 (369)
Q Consensus       138 ~fil~t~~~~--~l---l~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~----E~i~~d~~~l~~ia~~s  197 (369)
                      -||-+||.-.  +.   =|++-.|-|.+.+.-++.++....|......    .|+.+.++++...+..+
T Consensus       318 ~~IGatT~e~Y~k~iekdPalErrw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s  386 (898)
T KOG1051         318 WCIGATTLETYRKCIEKDPALERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLS  386 (898)
T ss_pred             EEEECCCHHHHHHHHHHCCCHHHCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
T ss_conf             897225099999987638205418551671357655314565554342011347712543342202101


No 248
>KOG0728 consensus
Probab=96.65  E-value=0.009  Score=40.59  Aligned_cols=128  Identities=20%  Similarity=0.285  Sum_probs=67.9

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             70620107879888899999999961468777886658789997799997798778222453322334555665554456
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYY  100 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~  100 (369)
                      |...|++||||+|||.+||+.|-.-.|.--..++       . .-.+++          |.    -|---+|++.--+  
T Consensus       181 PKGvlLygppgtGktLlaraVahht~c~firvsg-------s-elvqk~----------ig----egsrmvrelfvma--  236 (404)
T KOG0728         181 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG-------S-ELVQKY----------IG----EGSRMVRELFVMA--  236 (404)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHCCEEEEEECH-------H-HHHHHH----------HH----HHHHHHHHHHHHH--
T ss_conf             7604884699975629999987541407999644-------9-999998----------50----1389999999998--


Q ss_pred             HHHCCCCCEEEEECHHHCC-----------CCHHHHHHHHHH-----HCCCCCCEEEEECCCCCCCHHHHHHH---HHHH
Q ss_conf             5420465237751156648-----------001678999997-----21221114665067543303567543---3321
Q 537021.9.peg.4  101 KPISARFRVYIMDEVQMLS-----------TAAFNGLLKTLE-----EPPPHVKFIFATTEIRKIPITVLSRC---QRFD  161 (369)
Q Consensus       101 ~p~~~~~kv~iid~a~~m~-----------~~a~NaLLK~lE-----EPp~~~~fil~t~~~~~ll~TI~SRc---q~~~  161 (369)
                        -+--.-|+++||.|..-           .+-|-..|-.|-     |...+...|++|+..+-+=|.+.---   ..+.
T Consensus       237 --rehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkie  314 (404)
T KOG0728         237 --REHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIE  314 (404)
T ss_pred             --HHCCCCEEEEHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCCCC
T ss_conf             --750882675000012123434578986389999999999740240003662699841642224686638775455564


Q ss_pred             CCCCCCHHHHHHH
Q ss_conf             0245400135678
Q 537021.9.peg.4  162 LHRISIGDLIELF  174 (369)
Q Consensus       162 f~~l~~~~i~~~L  174 (369)
                      |+|++.+.=.+.|
T Consensus       315 fp~p~e~ar~~il  327 (404)
T KOG0728         315 FPPPNEEARLDIL  327 (404)
T ss_pred             CCCCCHHHHHHHH
T ss_conf             8998778887899


No 249
>KOG1803 consensus
Probab=96.65  E-value=0.0026  Score=44.52  Aligned_cols=44  Identities=36%  Similarity=0.542  Sum_probs=36.9

Q ss_pred             CCEEEEECH-HHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf             523775115-6648001678999997212211146650675433035675433
Q 537021.9.peg.4  107 FRVYIMDEV-QMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQ  158 (369)
Q Consensus       107 ~kv~iid~a-~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq  158 (369)
                      +-++||||| ..|-.++|=++||.       -.|||+ -+|-+|+|||.|+=-
T Consensus       359 fD~vIIDEaaQamE~~cWipvlk~-------kk~ILa-GDp~QLpP~v~S~~a  403 (649)
T KOG1803         359 FDLVIIDEAAQAMEPQCWIPVLKG-------KKFILA-GDPKQLPPTVLSDKA  403 (649)
T ss_pred             CCEEEEEHHHHHCCCHHHHHHHCC-------CCEEEE-CCCCCCCCCCCCCHH
T ss_conf             888998125432350130677627-------736992-880017860024233


No 250
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.64  E-value=0.0073  Score=41.24  Aligned_cols=42  Identities=21%  Similarity=0.311  Sum_probs=23.8

Q ss_pred             CCCCCEEEEECHHHCCCCHHHH-HHHHHHHCCCCCCEEEEECC
Q ss_conf             0465237751156648001678-99999721221114665067
Q 537021.9.peg.4  104 SARFRVYIMDEVQMLSTAAFNG-LLKTLEEPPPHVKFIFATTE  145 (369)
Q Consensus       104 ~~~~kv~iid~a~~m~~~a~Na-LLK~lEEPp~~~~fil~t~~  145 (369)
                      ..+++++||||||.|..+..-. .+..+..-+++..+++.|.-
T Consensus       101 ~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT  143 (144)
T cd00046         101 LKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSAT  143 (144)
T ss_pred             CCCCCEEEEECHHHHHCCCCHHHHHHHHHHCCCCCCEEEECCC
T ss_conf             5510099998888764379699999999967999948998289


No 251
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=96.63  E-value=0.0052  Score=42.32  Aligned_cols=46  Identities=28%  Similarity=0.365  Sum_probs=36.6

Q ss_pred             CCCHHHHHHHHHHHHH------CCCCCEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             9284899999999998------287670620107879888899999999961
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFK------SGRIAQSYMLSGTRGIGKTTTARIIARSLN   46 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~------~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~   46 (369)
                      +.||.-+.+.+.+++.      +.+-|=.+-|.|++|+||+-+|+++|+.|.
T Consensus        27 lfGQhla~~~v~~al~~~l~~~~p~KpLVlSfHG~tGtGKn~vs~liA~~Ly   78 (127)
T pfam06309        27 LFGQHLVKQLVVRSVKGHWENPKPRKPLVLSFHGWTGTGKNFVAEIIADNLY   78 (127)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf             3477989999999999997489999974887018999879899999999987


No 252
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=96.62  E-value=0.019  Score=38.18  Aligned_cols=32  Identities=22%  Similarity=0.299  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHH
Q ss_conf             489999999999828767062010787988889999999
Q 537021.9.peg.4    4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIA   42 (369)
Q Consensus         4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A   42 (369)
                      |..++..+.+       ++..+..+|.|+|||..+.+-+
T Consensus         4 Q~~~i~~~~~-------g~~~iv~~pTGsGKT~~~~~~~   35 (167)
T pfam00270         4 QAEAIPAILE-------GKDVLVQAPTGSGKTLAFLLPA   35 (167)
T ss_pred             HHHHHHHHHC-------CCCEEEECCCCCCHHHHHHHHH
T ss_conf             9999999976-------9978998899975899999999


No 253
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.61  E-value=0.011  Score=39.83  Aligned_cols=30  Identities=37%  Similarity=0.607  Sum_probs=24.8

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf             201078798888999999999614687778
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLNYKTAHID   53 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~   53 (369)
                      ..|.|++|+||||+++++|+.|++.--+.+
T Consensus         2 I~LiG~~G~GKstigk~la~~l~~~fiD~D   31 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD   31 (154)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEECC
T ss_conf             899889999889999999999798979685


No 254
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222   This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=96.61  E-value=0.011  Score=40.05  Aligned_cols=142  Identities=20%  Similarity=0.304  Sum_probs=72.9

Q ss_pred             HHHHHHHHCCCCCEEEHHCCCCCCCHHH-------------------------HHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             9999999828767062010787988889-------------------------999999996146877788665878999
Q 537021.9.peg.4    9 KTLTNAFKSGRIAQSYMLSGTRGIGKTT-------------------------TARIIARSLNYKTAHIDVPTVEFEGFG   63 (369)
Q Consensus         9 ~~l~~~~~~~~~~ha~lf~G~~G~GK~~-------------------------~a~~~A~~l~c~~~~~~~~~~~~c~~c   63 (369)
                      +-+.+||+.|.   -.+++|..|+||||                         +||-.|..+==+=+.       |-|.|
T Consensus        75 edI~~AI~~nQ---VviiAGETGSGKTTQLPKICLELGrG~~GlIGHTQPRRlAAR~VA~R~AeELgt-------plGe~  144 (1320)
T TIGR01967        75 EDIAKAIAENQ---VVIIAGETGSGKTTQLPKICLELGRGSRGLIGHTQPRRLAARSVAERVAEELGT-------PLGEL  144 (1320)
T ss_pred             HHHHHHHHHCC---EEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-------CCCCC
T ss_conf             99999998489---899972448762023216777542787654124714688999999999998388-------98861


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCHHHHHH--HHHHHHHHHHCCCCCEEEEECHH--HCCCCHHHHHHHHHHHCCCCCCE
Q ss_conf             779999779877822245332233455566--55544565420465237751156--64800167899999721221114
Q 537021.9.peg.4   64 EHCQAIIRGNHVDVVELDAASHTSIDDVRE--IIDQIYYKPISARFRVYIMDEVQ--MLSTAAFNGLLKTLEEPPPHVKF  139 (369)
Q Consensus        64 ~~c~~i~~~~~~d~~e~~~~s~~~id~ir~--l~~~~~~~p~~~~~kv~iid~a~--~m~~~a~NaLLK~lEEPp~~~~f  139 (369)
                      =-   + .=.|-|-+    .+++.|.=+=+  |+..++.==+-..|=-|||||||  -||.+--=.+||.|=.=-+.-.+
T Consensus       145 VG---Y-kVRF~D~v----~~~t~VKLmTDGiLLAE~Q~DRfL~~YDTIIIDEAHERSLNIDFLLGYLK~lL~rRPDLKi  216 (1320)
T TIGR01967       145 VG---Y-KVRFEDQV----SSNTLVKLMTDGILLAETQQDRFLERYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKI  216 (1320)
T ss_pred             CC---C-EEEECCCC----CCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCE
T ss_conf             32---0-36631426----8854363032235899852002221067336511231123388999888763266886525


Q ss_pred             EEEE--CCCCC----------CCHHHHH---HHHHHHC--CCCCCH
Q ss_conf             6650--67543----------3035675---4333210--245400
Q 537021.9.peg.4  140 IFAT--TEIRK----------IPITVLS---RCQRFDL--HRISIG  168 (369)
Q Consensus       140 il~t--~~~~~----------ll~TI~S---Rcq~~~f--~~l~~~  168 (369)
                      |.++  =++++          -+.+|.+   |+..+..  +||..+
T Consensus       217 IITSATID~ERFs~HFn~AeGkPaPIIEVSGRTyPVe~RYRPL~~~  262 (1320)
T TIGR01967       217 IITSATIDPERFSRHFNNAEGKPAPIIEVSGRTYPVEVRYRPLVEE  262 (1320)
T ss_pred             EEECCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCEEECCCCCC
T ss_conf             7400235744687862278889887555278546651111687644


No 255
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB.  This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.60  E-value=0.028  Score=36.89  Aligned_cols=141  Identities=18%  Similarity=0.134  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             89999999999828767062010787988889999999996146877788665878999779999779877822245332
Q 537021.9.peg.4    5 KPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAAS   84 (369)
Q Consensus         5 ~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s   84 (369)
                      +.....|+.+++.++   ..|++||.|+||||+.++++..+.-....   -+      ......+. -.||++..+....
T Consensus        12 ~~~~~~L~~~v~~~~---nIlIsG~tGSGKTTll~al~~~i~~~~ri---vt------iEd~~El~-l~~~~~v~l~~~~   78 (186)
T cd01130          12 PLQAAYLWLAVEARK---NILISGGTGSGKTTLLNALLAFIPPDERI---IT------IEDTAELQ-LPHPNWVRLVTRP   78 (186)
T ss_pred             HHHHHHHHHHHHCCC---CEEEECCCCCCHHHHHHHHHHHCCCCCCE---EE------ECCCHHHC-CCCCCEEEEEEEC
T ss_conf             999999999998599---89998999998999999999613345645---98------41535404-7777568888604


Q ss_pred             -----CCCHHHHHHHHH-HHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf             -----233455566555-44565420465237751156648001678999997212211146650675433035675433
Q 537021.9.peg.4   85 -----HTSIDDVREIID-QIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQ  158 (369)
Q Consensus        85 -----~~~id~ir~l~~-~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq  158 (369)
                           ...+ ...++++ -+++.     ...+++-|.-.  .+|+ .+++.+.--...   .++|-..+....+ .+|..
T Consensus        79 ~~~~~~~~~-~~~~li~~aLR~~-----pd~iivGEiR~--~Ea~-~~l~a~~tGh~g---~ltTiHa~s~~~a-i~Rl~  145 (186)
T cd01130          79 GNVEGSGEV-TMADLLRSALRMR-----PDRIIVGEVRG--GEAL-DLLQAMNTGHPG---GMTTIHANSAEEA-LTRLE  145 (186)
T ss_pred             CCCCCCCEE-CHHHHHHHHCCCC-----CCEEECCCCCC--HHHH-HHHHHHHCCCCC---CCCCCCCCCHHHH-HHHHH
T ss_conf             645786503-4999988736689-----97373175683--9999-999999748986---0303158999999-99999


Q ss_pred             H-HHCCCCCCHHHH
Q ss_conf             3-210245400135
Q 537021.9.peg.4  159 R-FDLHRISIGDLI  171 (369)
Q Consensus       159 ~-~~f~~l~~~~i~  171 (369)
                      . ....+.+.+.+.
T Consensus       146 ~l~~~~~~~~~~~~  159 (186)
T cd01130         146 LLPSNVPLGRPLLR  159 (186)
T ss_pred             HHHHCCCCCHHHHH
T ss_conf             88754799999999


No 256
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.59  E-value=0.0034  Score=43.72  Aligned_cols=24  Identities=38%  Similarity=0.577  Sum_probs=22.4

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             620107879888899999999961
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSLN   46 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l~   46 (369)
                      .+||+||+|+|||-+|-++|.+|.
T Consensus        98 gLlF~G~~GTGKThLA~aIan~Li  121 (242)
T PRK07952         98 SFIFSGKPGTGKNHLAAAICNELL  121 (242)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             179978999978999999999999


No 257
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.57  E-value=0.062  Score=34.37  Aligned_cols=135  Identities=12%  Similarity=0.175  Sum_probs=73.5

Q ss_pred             HHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCC-----CCCCCCC-----
Q ss_conf             999998287670620107879888899999999961468777886658789997799997798-----7782224-----
Q 537021.9.peg.4   11 LTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGN-----HVDVVEL-----   80 (369)
Q Consensus        11 l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~-----~~d~~e~-----   80 (369)
                      +.+.+...+.|=-.|+.|..|+||+|+|-.+|..|+-..--          ..++-|.+..+.     .|.++.=     
T Consensus        82 ~~r~~r~~~~pliILigGtsGvGKSTlA~~LA~rLgI~~vi----------sTD~IREVmR~~~~~el~P~Lh~SSy~Aw  151 (306)
T PRK04220         82 LWRRIRKSKEPIIILIGGASGVGTSTIAFELASRLGIRSVI----------GTDSIREVMRKIISKELLPTLHESSYTAW  151 (306)
T ss_pred             HHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEE----------CCHHHHHHHHHCCCCCCCCHHHCCCHHHH
T ss_conf             99998536998799985899887899999999970988342----------22169999985248301751322751310


Q ss_pred             -----CCCCCC----C-HHHHHHH---HHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf             -----533223----3-4555665---55445654204652377511566480016789999972122111466506754
Q 537021.9.peg.4   81 -----DAASHT----S-IDDVREI---IDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIR  147 (369)
Q Consensus        81 -----~~~s~~----~-id~ir~l---~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~  147 (369)
                           +..+..    | .+|...+   ++.+--+.. -..+=+||+.+|-.. .   -+.+..-+.|.-+.|+++-.+.+
T Consensus       152 k~l~~~~~~~~~~I~Gf~~Q~~~V~~gI~aiI~Ra~-~eg~slIIEGVHlvP-~---~i~~~~~~~~~vi~fll~i~dEe  226 (306)
T PRK04220        152 KSLRRPPWEEPDHILGFERHVEPVLVGVEAVIERAL-KEGISVIIEGVHIVP-G---FIKEKYLNMPNVFMFVLTLSDEE  226 (306)
T ss_pred             HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCEEEEEECCCH-H---HHHHHHHCCCCEEEEEEEECCHH
T ss_conf             023678778657999999999999999999999999-729968998430377-8---87777643883899999978889


Q ss_pred             CCCHHHHHHHHHH
Q ss_conf             3303567543332
Q 537021.9.peg.4  148 KIPITVLSRCQRF  160 (369)
Q Consensus       148 ~ll~TI~SRcq~~  160 (369)
                      .-..-..+|+..-
T Consensus       227 ~H~~RF~~Ra~~~  239 (306)
T PRK04220        227 THKARFYARARVS  239 (306)
T ss_pred             HHHHHHHHHCCCC
T ss_conf             9999999850447


No 258
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345   These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=96.56  E-value=0.013  Score=39.33  Aligned_cols=134  Identities=18%  Similarity=0.284  Sum_probs=74.0

Q ss_pred             HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHH---HC-----CCCC-CCCCCCCCCCC-CCHHHHHHHCCCCCCCC
Q ss_conf             999999982876706201078798888999999999---61-----4687-77886658789-99779999779877822
Q 537021.9.peg.4    9 KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARS---LN-----YKTA-HIDVPTVEFEG-FGEHCQAIIRGNHVDVV   78 (369)
Q Consensus         9 ~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~---l~-----c~~~-~~~~~~~~~c~-~c~~c~~i~~~~~~d~~   78 (369)
                      +.|..+ .++|   -.+++|=||+||||+.|+.+..   +-     ..+. ..+.++ ..|. +.+..|++.+-+     
T Consensus       357 ~AL~~~-~~~K---v~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd~~v-~LaAPTGrAAkRl~E~T-----  426 (769)
T TIGR01448       357 EALKTA-IQDK---VVILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDDLPV-VLAAPTGRAAKRLAEVT-----  426 (769)
T ss_pred             HHHHHH-HCCC---EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE-EEECCCHHHHHHCCCCC-----
T ss_conf             999998-6094---8998577888616899999999987168775531245677648-87377437888511002-----


Q ss_pred             CCCCCCCCCHHHHHHHHHHHH----HH---HHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCH
Q ss_conf             245332233455566555445----65---42046523775115664800167899999721221114665067543303
Q 537021.9.peg.4   79 ELDAASHTSIDDVREIIDQIY----YK---PISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPI  151 (369)
Q Consensus        79 e~~~~s~~~id~ir~l~~~~~----~~---p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~  151 (369)
                         |..   --.|..++.+=.    ..   --.-++..+||||.-||-.-=++.||-.+   |+++..||+... ++|  
T Consensus       427 ---G~~---a~TIHRLlG~~~~~~~~~k~~~~~~~~DL~IvDE~SM~Dt~L~~~lL~a~---P~~a~lllVGD~-DQL--  494 (769)
T TIGR01448       427 ---GLE---ALTIHRLLGYGSDTKSENKNLEDPIDADLLIVDESSMVDTWLASSLLAAV---PDHARLLLVGDA-DQL--  494 (769)
T ss_pred             ---CCH---HHHHHHHHCCCCCCCCCCHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHC---CCCCEEEEECCC-CCC--
T ss_conf             ---621---23477863689888732110113478776998146218899999998617---977779888376-888--


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             567543332102454001356787
Q 537021.9.peg.4  152 TVLSRCQRFDLHRISIGDLIELFT  175 (369)
Q Consensus       152 TI~SRcq~~~f~~l~~~~i~~~L~  175 (369)
                                 +++.+-.+.+-|-
T Consensus       495 -----------PSV~pG~VL~DLi  507 (769)
T TIGR01448       495 -----------PSVGPGQVLKDLI  507 (769)
T ss_pred             -----------CCCCCCHHHHHHH
T ss_conf             -----------9886440899998


No 259
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=96.55  E-value=0.0097  Score=40.32  Aligned_cols=93  Identities=26%  Similarity=0.254  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf             48999999999982876706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4    4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA   83 (369)
Q Consensus         4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~   83 (369)
                      |+.+++.+   .++++    .++..|.|+|||.++..+++.+.- ...                        .++.+-+ 
T Consensus         8 Q~~a~~~~---~~~~~----~~i~~pTGsGKT~~~~~~i~~~~~-~~~------------------------~~lvlvp-   54 (103)
T pfam04851         8 QIEAIRNL---LEKKR----GLIVMATGSGKTLTAAKLIARLLK-GKK------------------------KVLFLVP-   54 (103)
T ss_pred             HHHHHHHH---HHCCC----EEEEECCCCCHHHHHHHHHHHHHH-CCC------------------------CEEEEEC-
T ss_conf             99999999---96398----699958999879999999999984-699------------------------2999908-


Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf             2233455566555445654204652377511566480016789999972122111466506
Q 537021.9.peg.4   84 SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATT  144 (369)
Q Consensus        84 s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~  144 (369)
                      ++.=++|.++   ++          ++|+||||....+.  ..-+.++..++..++=|++|
T Consensus        55 ~~~L~~Q~~~---~~----------lii~DE~H~~~a~~--~~~~l~~~~~~~~~lGlTAT  100 (103)
T pfam04851        55 RKDLLEQALE---EF----------VIIIDEAHHSSAKT--KYRKILEYFKPAFLLGLTAT  100 (103)
T ss_pred             CHHHHHHHHH---HH----------HHHHHHHHHCCCHH--HHHHHHHHCCCCEEEEEEEC
T ss_conf             2999999999---65----------64601635235378--99999995772608998008


No 260
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.53  E-value=0.012  Score=39.65  Aligned_cols=33  Identities=15%  Similarity=0.356  Sum_probs=23.7

Q ss_pred             HHHHHHCCCCC--EEEHHCCCCCCCHHHHHHHHHHH
Q ss_conf             99999828767--06201078798888999999999
Q 537021.9.peg.4   11 LTNAFKSGRIA--QSYMLSGTRGIGKTTTARIIARS   44 (369)
Q Consensus        11 l~~~~~~~~~~--ha~lf~G~~G~GK~~~a~~~A~~   44 (369)
                      |-+.+ .|-+|  +.+|++|++|+|||++|.-|+..
T Consensus        21 lD~~l-~GG~p~g~~~li~G~~G~GKt~~~~~f~~~   55 (241)
T PRK06067         21 IDRKL-GGGIPFGSLILIEGENDTGKSVLSQQFVWG   55 (241)
T ss_pred             HHHHC-CCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             78650-699779908999807998879999999999


No 261
>PRK13948 shikimate kinase; Provisional
Probab=96.52  E-value=0.013  Score=39.34  Aligned_cols=35  Identities=29%  Similarity=0.352  Sum_probs=27.3

Q ss_pred             CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf             76706201078798888999999999614687778
Q 537021.9.peg.4   19 RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHID   53 (369)
Q Consensus        19 ~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~   53 (369)
                      |.+--..|.|++|+||||+++.+|+.|+..--+.+
T Consensus         8 ~~~~~IvLIG~mGsGKStiGk~LA~~l~~~fiD~D   42 (182)
T PRK13948          8 RPATFVALAGFMGTGKSRIGWELSRALALHFVDTD   42 (182)
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECH
T ss_conf             99981898899999889999999999695988884


No 262
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.48  E-value=0.0036  Score=43.52  Aligned_cols=26  Identities=38%  Similarity=0.523  Sum_probs=22.7

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             62010787988889999999996146
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSLNYK   48 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l~c~   48 (369)
                      -.+|+|+||+||||+|+.+|+.|--.
T Consensus         3 LiIlTGyPgsGKTtfakeLak~L~~~   28 (261)
T COG4088           3 LIILTGYPGSGKTTFAKELAKELRQE   28 (261)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf             69982699988017899999999972


No 263
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.47  E-value=0.0066  Score=41.57  Aligned_cols=22  Identities=27%  Similarity=0.244  Sum_probs=18.4

Q ss_pred             EEEHHCCCCCCCHHHHHHHHHH
Q ss_conf             0620107879888899999999
Q 537021.9.peg.4   22 QSYMLSGTRGIGKTTTARIIAR   43 (369)
Q Consensus        22 ha~lf~G~~G~GK~~~a~~~A~   43 (369)
                      .-+.++||+|+|||+++.-+|.
T Consensus        20 ~itEi~G~~GsGKTql~lqla~   41 (235)
T cd01123          20 SITEIFGEFGSGKTQLCHQLAV   41 (235)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
T ss_conf             7999999999849999999999


No 264
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=96.45  E-value=0.038  Score=35.94  Aligned_cols=181  Identities=13%  Similarity=0.181  Sum_probs=90.1

Q ss_pred             CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHHC---CCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             67062010787988889999999996146877788665-87899977999977---987782224533223345556655
Q 537021.9.peg.4   20 IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV-EFEGFGEHCQAIIR---GNHVDVVELDAASHTSIDDVREII   95 (369)
Q Consensus        20 ~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~-~~c~~c~~c~~i~~---~~~~d~~e~~~~s~~~id~ir~l~   95 (369)
                      +-..+|+.|..|+||-.+|+++-.+    ++...+|-. --|..-+.- ...+   |.-|-     ..++.|+       
T Consensus       226 lDAPLLI~GeTGTGKdLlAkaCH~~----S~R~~~pFlalNCA~lPe~-~aEsElFG~apg-----~~gk~Gf-------  288 (511)
T COG3283         226 LDAPLLITGETGTGKDLLAKACHLA----SPRHSKPFLALNCASLPED-AAESELFGHAPG-----DEGKKGF-------  288 (511)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHC----CCCCCCCEEEEECCCCCHH-HHHHHHHCCCCC-----CCCCCCH-------
T ss_conf             3787687448886188999987443----8455897367644779666-767777356888-----7776346-------


Q ss_pred             HHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHH-----------CCCCCCEEEEECCCC--C------CCHHHHHH
Q ss_conf             5445654204652377511566480016789999972-----------122111466506754--3------30356754
Q 537021.9.peg.4   96 DQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEE-----------PPPHVKFIFATTEIR--K------IPITVLSR  156 (369)
Q Consensus        96 ~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEE-----------Pp~~~~fil~t~~~~--~------ll~TI~SR  156 (369)
                        +-+  ..|  --+++|+.-.|+..-|-.||++|-.           -..+ +=++|+|+.+  .      .-.-.--|
T Consensus       289 --fE~--Ang--GTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vd-VRVIcatq~nL~~lv~~g~fReDLfyR  361 (511)
T COG3283         289 --FEQ--ANG--GTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVD-VRVICATQVNLVELVQKGKFREDLFYR  361 (511)
T ss_pred             --HHH--CCC--CEEEEEHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEE-EEEEECCCCCHHHHHHCCCHHHHHHHH
T ss_conf             --340--269--7488500332499899999998627760003775457877-899961666699998637258878877


Q ss_pred             HHHH--HCCCCCC--HHH----HHHHHHHHHHCCC---CCCHHHHHHHHH-CCCCCCCHHHHCCCCCCCHHHCC-CCHHH
Q ss_conf             3332--1024540--013----5678764310134---562566445653-16764200110001110000001-21032
Q 537021.9.peg.4  157 CQRF--DLHRISI--GDL----IELFTKILQEESI---EFDPEAVAMIAR-ASDGSARDGLSLLDQAIARCNDK-IVTSS  223 (369)
Q Consensus       157 cq~~--~f~~l~~--~~i----~~~L~~i~~~E~i---~~d~~~l~~ia~-~s~GslR~Al~lLeq~i~~~~~~-i~~e~  223 (369)
                      --++  +++|+..  ++|    .-++.+++.+-|+   +.+++.+..+.+ ...|++|.-.|.+=++.+.+++. +..++
T Consensus       362 LNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~Eg~~l~i~~  441 (511)
T COG3283         362 LNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTLLEGYELRIED  441 (511)
T ss_pred             HHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf             50134238850006521068999999999997589987668789999987799960999999999999985167444320


Q ss_pred             H
Q ss_conf             2
Q 537021.9.peg.4  224 V  224 (369)
Q Consensus       224 v  224 (369)
                      +
T Consensus       442 i  442 (511)
T COG3283         442 I  442 (511)
T ss_pred             C
T ss_conf             0


No 265
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2.  The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia.  Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole.  In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells.  CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.44  E-value=0.019  Score=38.14  Aligned_cols=52  Identities=25%  Similarity=0.478  Sum_probs=33.6

Q ss_pred             CCCCEEEEECH-HHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             46523775115-6648001678999997212211146650675433035675433321
Q 537021.9.peg.4  105 ARFRVYIMDEV-QMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFD  161 (369)
Q Consensus       105 ~~~kv~iid~a-~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~  161 (369)
                      .+.+|+|+||+ -.|-..+...+.+++++-..++..|++|+.++.    +. .|.++-
T Consensus       155 ~~p~IllLDEpTs~LD~~te~~i~~~l~~~~~~~TvI~itHrl~~----~~-~~DrIl  207 (275)
T cd03289         155 SKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEA----ML-ECQRFL  207 (275)
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHH----HH-HCCEEE
T ss_conf             199989997976689999999999999997299989999438888----98-699999


No 266
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.41  E-value=0.012  Score=39.71  Aligned_cols=13  Identities=23%  Similarity=0.204  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             8999999999995
Q 537021.9.peg.4  334 PMEAVEMVLIRLA  346 (369)
Q Consensus       334 p~L~lE~lLlkL~  346 (369)
                      +|+++=.++++=.
T Consensus       486 QRialARall~~~  498 (581)
T PRK11176        486 QRIAIARALLRDS  498 (581)
T ss_pred             HHHHHHHHHHCCC
T ss_conf             9999999996799


No 267
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2.  A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.40  E-value=0.0062  Score=41.75  Aligned_cols=29  Identities=21%  Similarity=0.334  Sum_probs=21.6

Q ss_pred             EEEHHCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             06201078798888999999999614687
Q 537021.9.peg.4   22 QSYMLSGTRGIGKTTTARIIARSLNYKTA   50 (369)
Q Consensus        22 ha~lf~G~~G~GK~~~a~~~A~~l~c~~~   50 (369)
                      .-+-+.||.|+||||+.+.+...+.+..+
T Consensus        31 ~~v~ivG~sGsGKSTLl~ll~gl~~p~~G   59 (220)
T cd03245          31 EKVAIIGRVGSGKSTLLKLLAGLYKPTSG   59 (220)
T ss_pred             CEEEEECCCCCHHHHHHHHHHCCCCCCCC
T ss_conf             99999999998599999999672547865


No 268
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.40  E-value=0.015  Score=39.04  Aligned_cols=12  Identities=8%  Similarity=0.019  Sum_probs=4.3

Q ss_pred             CCCCCCHHHHHH
Q ss_conf             787988889999
Q 537021.9.peg.4   28 GTRGIGKTTTAR   39 (369)
Q Consensus        28 G~~G~GK~~~a~   39 (369)
                      +..|+--..+.+
T Consensus        28 ~~~G~sl~~l~~   39 (694)
T TIGR03375        28 EDGRLTPELLPR   39 (694)
T ss_pred             CCCCCCHHHHHH
T ss_conf             999999999999


No 269
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.39  E-value=0.025  Score=37.30  Aligned_cols=36  Identities=31%  Similarity=0.483  Sum_probs=26.0

Q ss_pred             HHHHHHHCCCCCEE-EHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             99999982876706-2010787988889999999996
Q 537021.9.peg.4   10 TLTNAFKSGRIAQS-YMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        10 ~l~~~~~~~~~~ha-~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      .|-+.+--|=+|-+ .|+.|.||+||+|+..-.|..+
T Consensus        70 ElDRVLGGGiVpGSvvLlgGePGIGKSTLLLQia~~l  106 (372)
T cd01121          70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARL  106 (372)
T ss_pred             HHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             6654005773067179982599886889999999999


No 270
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.36  E-value=0.088  Score=33.28  Aligned_cols=132  Identities=17%  Similarity=0.260  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             99999999982876706201078798888999999999614687778866587899977999977987782224533223
Q 537021.9.peg.4    7 MIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHT   86 (369)
Q Consensus         7 ~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~   86 (369)
                      ....+.+.+...  |++.++.||+++||||+...+.+.+.-.  ...      -..|+            ..   . ...
T Consensus        25 ~~~~l~~~~~~~--~~i~~i~GpR~~GKTtllk~l~~~~~~~--~iy------~~~~d------------~~---~-~~~   78 (398)
T COG1373          25 LLPRLIKKLDLR--PFIILILGPRQVGKTTLLKLLIKGLLEE--IIY------INFDD------------LR---L-DRI   78 (398)
T ss_pred             HHHHHHHHHCCC--CCEEEEECCCCCCHHHHHHHHHHHCCCC--EEE------EECCC------------CC---C-CHH
T ss_conf             779987650357--8549998886477899999999747773--599------97362------------00---0-135


Q ss_pred             C-HHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHHHHHHHHH
Q ss_conf             3-45556655544565420465237751156648001678999997212211146650675----433035675433321
Q 537021.9.peg.4   87 S-IDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEI----RKIPITVLSRCQRFD  161 (369)
Q Consensus        87 ~-id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~----~~ll~TI~SRcq~~~  161 (369)
                      . .|..+.+.+   ....  +...+++||++.. .+=++++-.....++.  -|++++.+.    .++.++..=|--.+.
T Consensus        79 ~l~d~~~~~~~---~~~~--~~~yifLDEIq~v-~~W~~~lk~l~d~~~~--~v~itgsss~ll~~~~s~~L~GR~~~~~  150 (398)
T COG1373          79 ELLDLLRAYIE---LKER--EKSYIFLDEIQNV-PDWERALKYLYDRGNL--DVLITGSSSSLLSKEISESLAGRGKDLE  150 (398)
T ss_pred             HHHHHHHHHHH---HHCC--CCCEEEEEEECCC-HHHHHHHHHHHCCCCC--EEEEECCCHHHHCCCHHHHCCCCEEEEE
T ss_conf             67789999998---5222--5745999833376-1089999999756775--0999837167541330232499823789


Q ss_pred             CCCCCCHHHHH
Q ss_conf             02454001356
Q 537021.9.peg.4  162 LHRISIGDLIE  172 (369)
Q Consensus       162 f~~l~~~~i~~  172 (369)
                      +.|+|-.+...
T Consensus       151 l~PlSF~Efl~  161 (398)
T COG1373         151 LYPLSFREFLK  161 (398)
T ss_pred             ECCCCHHHHHH
T ss_conf             84888899864


No 271
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.35  E-value=0.034  Score=36.31  Aligned_cols=30  Identities=37%  Similarity=0.634  Sum_probs=25.2

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf             201078798888999999999614687778
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLNYKTAHID   53 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~   53 (369)
                      ..|.|++|+||||+++.+|+.|++.--+.+
T Consensus         7 I~liG~~GsGKTtvgk~LA~~L~~~fiD~D   36 (175)
T PRK00131          7 IVLIGMMGAGKSTIGRLLAKRLGYEFIDTD   36 (175)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf             898889999989999999999596902398


No 272
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1).  NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters.  Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear.  The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed.  MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.35  E-value=0.012  Score=39.78  Aligned_cols=24  Identities=29%  Similarity=0.358  Sum_probs=19.9

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             620107879888899999999961
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSLN   46 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l~   46 (369)
                      -+-+.||.|+||+|+++.++..+.
T Consensus        36 ~v~ivG~sGsGKSTLl~ll~g~~~   59 (207)
T cd03369          36 KIGIVGRTGAGKSTLILALFRFLE   59 (207)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             999999999879999999998728


No 273
>PRK13947 shikimate kinase; Provisional
Probab=96.34  E-value=0.027  Score=37.07  Aligned_cols=30  Identities=33%  Similarity=0.500  Sum_probs=25.1

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf             201078798888999999999614687778
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLNYKTAHID   53 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~   53 (369)
                      ..|.|++|+||||+++.+|+.|++.--+.+
T Consensus         4 I~LiG~mGsGKTtiGk~La~~L~~~fiD~D   33 (171)
T PRK13947          4 IVLIGFMGTGKTTVGKKVATTLSFGFIDTD   33 (171)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEECH
T ss_conf             899799999889999999999796989874


No 274
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.31  E-value=0.028  Score=36.90  Aligned_cols=12  Identities=8%  Similarity=0.003  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             899999999999
Q 537021.9.peg.4  334 PMEAVEMVLIRL  345 (369)
Q Consensus       334 p~L~lE~lLlkL  345 (369)
                      +|+.+-..+++=
T Consensus       483 QRiaiARAll~~  494 (575)
T PRK11160        483 RRLGIARALLHD  494 (575)
T ss_pred             HHHHHHHHHHCC
T ss_conf             999999999459


No 275
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.  This family is also known as MRP (mulrtidrug resisitance-associated protein).  Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear.  The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed.  MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.30  E-value=0.017  Score=38.53  Aligned_cols=23  Identities=22%  Similarity=0.299  Sum_probs=18.8

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             62010787988889999999996
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      -+-+.||.|+||+|+++.++..+
T Consensus        32 ~v~ivG~sGsGKSTLl~ll~gl~   54 (221)
T cd03244          32 KVGIVGRTGSGKSSLLLALFRLV   54 (221)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             99999999998999999996797


No 276
>pfam07693 KAP_NTPase KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.
Probab=96.30  E-value=0.13  Score=32.12  Aligned_cols=41  Identities=20%  Similarity=0.262  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHCCCC--CEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             999999999982876--70620107879888899999999961
Q 537021.9.peg.4    6 PMIKTLTNAFKSGRI--AQSYMLSGTRGIGKTTTARIIARSLN   46 (369)
Q Consensus         6 ~~~~~l~~~~~~~~~--~ha~lf~G~~G~GK~~~a~~~A~~l~   46 (369)
                      ...+.|.+.+.+-..  |-..=+.|+=|+|||++-..+.+.|.
T Consensus         3 ~~a~~la~~i~~~~~~~~~vIgl~G~WGsGKTs~l~~~~~~L~   45 (301)
T pfam07693         3 KYAENLAKLLVEPSLAPGFVIGLYGAWGSGKTSFLNLLEDELK   45 (301)
T ss_pred             HHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             7899999999577789997999989899999999999999986


No 277
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.30  E-value=0.023  Score=37.61  Aligned_cols=12  Identities=25%  Similarity=0.332  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             899999999999
Q 537021.9.peg.4  334 PMEAVEMVLIRL  345 (369)
Q Consensus       334 p~L~lE~lLlkL  345 (369)
                      +|+++=..+++=
T Consensus       483 QRiaiARall~~  494 (593)
T PRK10790        483 QLLALARVLVET  494 (593)
T ss_pred             HHHHHHHHHHCC
T ss_conf             999999999559


No 278
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.27  E-value=0.016  Score=38.79  Aligned_cols=24  Identities=25%  Similarity=0.484  Sum_probs=20.5

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             7062010787988889999999996
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      -| |.+.||.|.||||+.++++...
T Consensus        58 e~-W~I~G~NGsGKTTLL~ll~~~~   81 (257)
T COG1119          58 EH-WAIVGPNGAGKTTLLSLLTGEH   81 (257)
T ss_pred             CC-EEEECCCCCCHHHHHHHHHCCC
T ss_conf             84-7998889877899999996125


No 279
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.26  E-value=0.02  Score=37.96  Aligned_cols=30  Identities=37%  Similarity=0.510  Sum_probs=25.0

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf             201078798888999999999614687778
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLNYKTAHID   53 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~   53 (369)
                      ..+.|++|+||||+++.+|+.|+..--+.+
T Consensus         7 I~LiG~mGsGKstvgk~LA~~l~~~fiD~D   36 (172)
T PRK05057          7 IFLVGPMGAGKSTIGRQLAQQLNMEFYDSD   36 (172)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEECH
T ss_conf             898899999889999999999699968780


No 280
>cd03288 ABCC_SUR2 The SUR domain 2.  The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family.  Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel.  Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism.  It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.26  E-value=0.022  Score=37.78  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=19.3

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             620107879888899999999961
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSLN   46 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l~   46 (369)
                      -.-+.||.|+||+|+++.++..+.
T Consensus        49 ~vaIvG~sGsGKSTL~~ll~gl~~   72 (257)
T cd03288          49 KVGICGRTGSGKSSLSLAFFRMVD   72 (257)
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf             999999999819999999960566


No 281
>KOG0478 consensus
Probab=96.24  E-value=0.0031  Score=44.02  Aligned_cols=146  Identities=18%  Similarity=0.196  Sum_probs=79.4

Q ss_pred             CCCHHHHHHHHHHHHHCC---------CC---CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             928489999999999828---------76---706201078798888999999999614687778866587899977999
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSG---------RI---AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQA   68 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~---------~~---~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~   68 (369)
                      |-|++.+++.|--++-.|         |.   -| .|++|.||+||+-+-...++.+-   +..     -..|+..+...
T Consensus       431 Iye~edvKkglLLqLfGGt~k~~~~~~~~R~~IN-ILL~GDPGtsKSqlLqyv~~l~p---Rg~-----yTSGkGsSavG  501 (804)
T KOG0478         431 IYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDIN-ILLVGDPGTSKSQLLQYCHRLLP---RGV-----YTSGKGSSAVG  501 (804)
T ss_pred             HHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCE-EEEECCCCCCHHHHHHHHHHHCC---CCE-----EECCCCCCHHC
T ss_conf             5344226666778875687632233444245522-89946998678999999997477---540-----40587630220


Q ss_pred             HHCCCCCCCCCCCCCCCCCHHHHHHHH-HHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCC-----C-----
Q ss_conf             977987782224533223345556655-54456542046523775115664800167899999721221-----1-----
Q 537021.9.peg.4   69 IIRGNHVDVVELDAASHTSIDDVREII-DQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPH-----V-----  137 (369)
Q Consensus        69 i~~~~~~d~~e~~~~s~~~id~ir~l~-~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~-----~-----  137 (369)
                      ....-            ++--+-|++. +.-.+  .-++.-|+-|||.|+|+..+.+-|+-.||--.-.     .     
T Consensus       502 LTayV------------trd~dtkqlVLesGAL--VLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLN  567 (804)
T KOG0478         502 LTAYV------------TKDPDTRQLVLESGAL--VLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLN  567 (804)
T ss_pred             CEEEE------------EECCCCCEEEEECCCE--EECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECC
T ss_conf             03567------------7657655466504848--972896577112333327788999999987631174302234216


Q ss_pred             --CEEEEECCCC--------------CCCHHHHHHHHHHHCCCCCCHH
Q ss_conf             --1466506754--------------3303567543332102454001
Q 537021.9.peg.4  138 --KFIFATTEIR--------------KIPITVLSRCQRFDLHRISIGD  169 (369)
Q Consensus       138 --~fil~t~~~~--------------~ll~TI~SRcq~~~f~~l~~~~  169 (369)
                        -=||+|.||.              .|+||+.||.-.+.+--=.+++
T Consensus       568 AR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE  615 (804)
T KOG0478         568 ARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDE  615 (804)
T ss_pred             CCCEEEEEECCCCCCCCCCCCHHHCCCCCHHHHHHHCEEEEEECCCCH
T ss_conf             653034453543245799976232167880564323378998427532


No 282
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.23  E-value=0.047  Score=35.26  Aligned_cols=13  Identities=15%  Similarity=0.054  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             8999999999995
Q 537021.9.peg.4  334 PMEAVEMVLIRLA  346 (369)
Q Consensus       334 p~L~lE~lLlkL~  346 (369)
                      +|+++=.++++=.
T Consensus       458 QRialARAll~~p  470 (569)
T PRK10789        458 QRISIARALLLNA  470 (569)
T ss_pred             HHHHHHHHHHCCC
T ss_conf             9999999995499


No 283
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344   This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=96.22  E-value=0.026  Score=37.13  Aligned_cols=139  Identities=19%  Similarity=0.316  Sum_probs=67.9

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC-----CCCCCCCHH-HHHHHCCCCCCCC-C---CCCCC----CCCH
Q ss_conf             6201078798888999999999614687778866-----587899977-9999779877822-2---45332----2334
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPT-----VEFEGFGEH-CQAIIRGNHVDVV-E---LDAAS----HTSI   88 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~-----~~~c~~c~~-c~~i~~~~~~d~~-e---~~~~s----~~~i   88 (369)
                      -.|++|=|||||||++-.+=.+|+-.......|-     .-|=|+--. -..+...+.-++- +   ||++-    ...+
T Consensus       244 f~li~GGPGTGKTTTv~~LL~al~~~~~~~G~~~~~I~l~APTGKAa~RL~esl~~~~~~L~~~~~aid~~~~~~~~~~~  323 (753)
T TIGR01447       244 FSLITGGPGTGKTTTVARLLLALIKQSPKQGKPRLRIALAAPTGKAAARLAESLRKAVKKLAAENMAIDEDLIAALPSEA  323 (753)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHH
T ss_conf             68998798897789999999999998986499740478866844799999999998863223423665879854872045


Q ss_pred             HHHHHHHHHHH-----HHHHCC---CCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCC--------EEEEECCCCCCCHH
Q ss_conf             55566555445-----654204---652377511566480016789999972122111--------46650675433035
Q 537021.9.peg.4   89 DDVREIIDQIY-----YKPISA---RFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVK--------FIFATTEIRKIPIT  152 (369)
Q Consensus        89 d~ir~l~~~~~-----~~p~~~---~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~--------fil~t~~~~~ll~T  152 (369)
                      ..|..|+....     ++-.+.   .+=|+|||||=|++-.=--.|++++   |+++.        .||+... ++|   
T Consensus       324 ~TiHrLLG~~~I~~~~fr~h~~N~L~~DVLvvDEaSMVdl~lm~kL~~A~---~~~~k~~KLy~~~LIllGD~-nQL---  396 (753)
T TIGR01447       324 TTIHRLLGIKPIDTKRFRHHERNPLPLDVLVVDEASMVDLPLMAKLLKAL---PPNTKDKKLYADRLILLGDK-NQL---  396 (753)
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCHHCCHHHHHHHHHHC---CCCCCCCCHHHCCCCEECCC-CCC---
T ss_conf             68888616614787677677778898552787060022679999999722---63001320101020012267-888---


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf             67543332102454001356787643
Q 537021.9.peg.4  153 VLSRCQRFDLHRISIGDLIELFTKIL  178 (369)
Q Consensus       153 I~SRcq~~~f~~l~~~~i~~~L~~i~  178 (369)
                                +|+...++-.-|...+
T Consensus       397 ----------~sveaG~Vl~~l~~~~  412 (753)
T TIGR01447       397 ----------PSVEAGAVLGDLCELA  412 (753)
T ss_pred             ----------CCCCHHHHHHHHHHHH
T ss_conf             ----------8754355579999997


No 284
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.21  E-value=0.025  Score=37.30  Aligned_cols=35  Identities=23%  Similarity=0.224  Sum_probs=23.9

Q ss_pred             HHHHHHCCCCC-EEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             99999828767-062010787988889999999996
Q 537021.9.peg.4   11 LTNAFKSGRIA-QSYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        11 l~~~~~~~~~~-ha~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      |-+.+.-|=.+ ...+++||||+|||++|.-+|...
T Consensus        12 lD~~LgGGi~~G~itei~G~pG~GKTtl~lq~a~~~   47 (224)
T PRK09361         12 LDELLGGGIERGTITQIYGPPGSGKTNICIQLAVEA   47 (224)
T ss_pred             HHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             998626998888799998999985999999999999


No 285
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.20  E-value=0.026  Score=37.13  Aligned_cols=127  Identities=20%  Similarity=0.211  Sum_probs=60.5

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCC---CCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             2010787988889999999996146877788665878999779999779---8778222453322334555665554456
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRG---NHVDVVELDAASHTSIDDVREIIDQIYY  100 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~---~~~d~~e~~~~s~~~id~ir~l~~~~~~  100 (369)
                      ..|.|+.|+||||+++.+|+.|+..--+.+.             .|...   +-+++++-.|.     +.-|++-..+-.
T Consensus         5 IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~-------------~Ie~~~g~sI~eIF~~~GE-----~~FR~~E~~vl~   66 (172)
T COG0703           5 IVLIGFMGAGKSTIGRALAKALNLPFIDTDQ-------------EIEKRTGMSIAEIFEEEGE-----EGFRRLETEVLK   66 (172)
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCHH-------------HHHHHHCCCHHHHHHHHHH-----HHHHHHHHHHHH
T ss_conf             8997179997768999999981998022469-------------9999979699999999828-----999999999999


Q ss_pred             HHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHH-HHHHHHHH
Q ss_conf             54204652377511566480016789999972122111466506754330356754333210245400135-67876431
Q 537021.9.peg.4  101 KPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLI-ELFTKILQ  179 (369)
Q Consensus       101 ~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~-~~L~~i~~  179 (369)
                      .-......|+=--.-=-|+.+.-++|.+       +.+-|++..    =++++..|++.-+=+|+-...-. +.|.++.+
T Consensus        67 ~l~~~~~~ViaTGGG~v~~~enr~~l~~-------~g~vv~L~~----~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~  135 (172)
T COG0703          67 ELLEEDNAVIATGGGAVLSEENRNLLKK-------RGIVVYLDA----PFETLYERLQRDRKRPLLQTEDPREELEELLE  135 (172)
T ss_pred             HHHHCCCEEEECCCCCCCCHHHHHHHHH-------CCEEEEEEC----CHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             9862699599779861168999999984-------885899969----99999998234667986567776899999999


No 286
>KOG0726 consensus
Probab=96.17  E-value=0.036  Score=36.13  Aligned_cols=135  Identities=21%  Similarity=0.301  Sum_probs=70.7

Q ss_pred             CHHHHHHHHHHHHHC-----------C-CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             848999999999982-----------8-7670620107879888899999999961468777886658789997799997
Q 537021.9.peg.4    3 GQKPMIKTLTNAFKS-----------G-RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAII   70 (369)
Q Consensus         3 Gq~~~~~~l~~~~~~-----------~-~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~   70 (369)
                      |-+.-++.++.+++-           | +-|...+++|+||+|||.+|.+.|..   ++..+--    .-|+  .-.+-.
T Consensus       189 Gle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANq---TSATFlR----vvGs--eLiQky  259 (440)
T KOG0726         189 GLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQ---TSATFLR----VVGS--ELIQKY  259 (440)
T ss_pred             CHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCC---CCHHHHH----HHHH--HHHHHH
T ss_conf             578999999986338889878999728899970588679997536888877245---5212455----6508--999987


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHCCCCCEEEEECHHHCC-----------CCHHHHHHHHHHH-----C
Q ss_conf             79877822245332233455566555445-65420465237751156648-----------0016789999972-----1
Q 537021.9.peg.4   71 RGNHVDVVELDAASHTSIDDVREIIDQIY-YKPISARFRVYIMDEVQMLS-----------TAAFNGLLKTLEE-----P  133 (369)
Q Consensus        71 ~~~~~d~~e~~~~s~~~id~ir~l~~~~~-~~p~~~~~kv~iid~a~~m~-----------~~a~NaLLK~lEE-----P  133 (369)
                      -|             -|-.-+|++..-+. .+|     -|++|||.|..-           ++-|-.+|-.|-.     -
T Consensus       260 lG-------------dGpklvRqlF~vA~e~ap-----SIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds  321 (440)
T KOG0726         260 LG-------------DGPKLVRELFRVAEEHAP-----SIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS  321 (440)
T ss_pred             HC-------------CCHHHHHHHHHHHHHCCC-----CEEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             36-------------551999999988875298-----269864001104521347885078999999999874268665


Q ss_pred             CCCCCEEEEECCCCCCCHHH-HHHH--HHHHCCC
Q ss_conf             22111466506754330356-7543--3321024
Q 537021.9.peg.4  134 PPHVKFIFATTEIRKIPITV-LSRC--QRFDLHR  164 (369)
Q Consensus       134 p~~~~fil~t~~~~~ll~TI-~SRc--q~~~f~~  164 (369)
                      -..+..|++|+..+.|=|.+ |--+  ..+.|..
T Consensus       322 rgDvKvimATnrie~LDPaLiRPGrIDrKIef~~  355 (440)
T KOG0726         322 RGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL  355 (440)
T ss_pred             CCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCCC
T ss_conf             6775899741653446775527875431112579


No 287
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001    This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=96.16  E-value=0.041  Score=35.73  Aligned_cols=121  Identities=23%  Similarity=0.301  Sum_probs=72.1

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC-----CCC-----CH-----
Q ss_conf             201078798888999999999614687778866587899977999977987782224533-----223-----34-----
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA-----SHT-----SI-----   88 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~-----s~~-----~i-----   88 (369)
                      |++-|+.||||||+|..+|+.|-                         .-+||...|||.     -|+     |+     
T Consensus         1 ~VlmGvaG~GKs~~a~~l~~~lg-------------------------~iyPd~~yieGDdLHP~~Ni~KMs~GiPL~Dd   55 (175)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLG-------------------------DIYPDAKYIEGDDLHPAANIEKMSRGIPLNDD   55 (175)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH-------------------------HHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
T ss_conf             96760278628899999999854-------------------------31578875688666787779873178888701


Q ss_pred             ---HHHHHHHHHHHHHHHCCCCC-EEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf             ---55566555445654204652-37751156648001678999997212211146650675433035675433321024
Q 537021.9.peg.4   89 ---DDVREIIDQIYYKPISARFR-VYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHR  164 (369)
Q Consensus        89 ---d~ir~l~~~~~~~p~~~~~k-v~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f~~  164 (369)
                         +.-..+.+.+...-..++-+ ++|.-.|  |=+.==.-|+..+|++++++-||...-...-++.=..+|-=||    
T Consensus        56 DR~pWL~~l~~~~~~~~~~~~~~~~~~~CSA--LKr~YRD~LR~s~~~~~~~~~FiyL~~~~~~~~~R~~~RkGHF----  129 (175)
T TIGR01313        56 DRWPWLKNLADALAQAAAKNKVHLVIITCSA--LKRKYRDILRSSLEEAEPELHFIYLSGSKEVILKRMKSRKGHF----  129 (175)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCEEEEEEC--CHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCC----
T ss_conf             2043799999999999845774544788401--1135556654220268984378863689899999961078998----


Q ss_pred             CCCHHHHHHHH
Q ss_conf             54001356787
Q 537021.9.peg.4  165 ISIGDLIELFT  175 (369)
Q Consensus       165 l~~~~i~~~L~  175 (369)
                      .+...|...++
T Consensus       130 Mka~m~~SQf~  140 (175)
T TIGR01313       130 MKADMLESQFE  140 (175)
T ss_pred             CCCHHHHHHHH
T ss_conf             62047899999


No 288
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=96.16  E-value=0.033  Score=36.45  Aligned_cols=203  Identities=20%  Similarity=0.258  Sum_probs=106.8

Q ss_pred             CCCHHHHHHHHHHHHH---CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCHHHHHHHC--CCC
Q ss_conf             9284899999999998---287670620107879888899999999961468777886658-7899977999977--987
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFK---SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVE-FEGFGEHCQAIIR--GNH   74 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~---~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~-~c~~c~~c~~i~~--~~~   74 (369)
                      |||+..+...+...|+   ....+  .|+.|..|+||--+||++-+.    ++..+.|-+. -|.--+.- ...+  ..|
T Consensus       225 iIG~S~am~~ll~~i~~VA~Sd~t--VLi~GETGtGKElvAraIH~~----S~R~~kPfV~~NCAAlPes-LlESELFGH  297 (550)
T COG3604         225 IIGRSPAMRQLLKEIEVVAKSDST--VLIRGETGTGKELVARAIHQL----SPRRDKPFVKLNCAALPES-LLESELFGH  297 (550)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCE--EEEECCCCCCHHHHHHHHHHH----CCCCCCCCEEEECCCCCHH-HHHHHHHCC
T ss_conf             230699999999999987268980--798458885389999999873----7555798666312225378-888887453


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC-----------CCCCEEEEE
Q ss_conf             782224533223345556655544565420465237751156648001678999997212-----------211146650
Q 537021.9.peg.4   75 VDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP-----------PHVKFIFAT  143 (369)
Q Consensus        75 ~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp-----------~~~~fil~t  143 (369)
                          |- ||- +|..--|  ..  .|--..|  --.++||.-.|.-.-|-.||+.|-|--           -.|..|-+ 
T Consensus       298 ----eK-GAF-TGA~~~r--~G--rFElAdG--GTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAA-  364 (550)
T COG3604         298 ----EK-GAF-TGAINTR--RG--RFELADG--GTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAA-  364 (550)
T ss_pred             ----CC-CCC-CCCHHCC--CC--CEEECCC--CEEECHHHCCCCHHHHHHHHHHHHHCCEEECCCCCEEEEEEEEEEC-
T ss_conf             ----32-233-3510146--76--3565579--7576022036787788999999863652534799636777899821-


Q ss_pred             CCCC--------CCCHHHHHHHHHHHC--CCCCC--HHH----HHHHHHHHHHCC---CCCCHHHHHHHHHC-CCCCCCH
Q ss_conf             6754--------330356754333210--24540--013----567876431013---45625664456531-6764200
Q 537021.9.peg.4  144 TEIR--------KIPITVLSRCQRFDL--HRISI--GDL----IELFTKILQEES---IEFDPEAVAMIARA-SDGSARD  203 (369)
Q Consensus       144 ~~~~--------~ll~TI~SRcq~~~f--~~l~~--~~i----~~~L~~i~~~E~---i~~d~~~l~~ia~~-s~GslR~  203 (369)
                      ||-+        +.-.-.--|--+|++  +|+-.  ++|    ..++++....-|   +.+++++++.+.++ .-||+|.
T Consensus       365 TNRDL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRE  444 (550)
T COG3604         365 TNRDLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRE  444 (550)
T ss_pred             CCHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCHHH
T ss_conf             35309999874951554532102001378983458866799999999999886397640339899999973999971999


Q ss_pred             HHHCCCCCCCHHHCCCCHHH
Q ss_conf             11000111000000121032
Q 537021.9.peg.4  204 GLSLLDQAIARCNDKIVTSS  223 (369)
Q Consensus       204 Al~lLeq~i~~~~~~i~~e~  223 (369)
                      -.+.++++....+..++.++
T Consensus       445 Len~veRavlla~~~~~~~d  464 (550)
T COG3604         445 LENVVERAVLLAGRLTRRGD  464 (550)
T ss_pred             HHHHHHHHHHHCCCCCCCCC
T ss_conf             99899999997047677765


No 289
>PRK13946 shikimate kinase; Provisional
Probab=96.15  E-value=0.037  Score=36.08  Aligned_cols=39  Identities=28%  Similarity=0.377  Sum_probs=28.9

Q ss_pred             HHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9999982876706201078798888999999999614687778
Q 537021.9.peg.4   11 LTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHID   53 (369)
Q Consensus        11 l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~   53 (369)
                      +..++..+    ...|.|++|+||||+++.+|+.|++.--+.+
T Consensus        14 ~~~~l~kk----nIvLIG~mGsGKStvGk~LA~~L~~~fiD~D   52 (195)
T PRK13946         14 IRAALGKR----TVVLVGLMGAGKSTVGRRLATMLGLPFLDAD   52 (195)
T ss_pred             HHHHHCCC----CEEEECCCCCCHHHHHHHHHHHHCCCEEECH
T ss_conf             99985899----5899899999889999999999797989885


No 290
>PRK13949 shikimate kinase; Provisional
Probab=96.12  E-value=0.026  Score=37.18  Aligned_cols=30  Identities=37%  Similarity=0.535  Sum_probs=25.2

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf             201078798888999999999614687778
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLNYKTAHID   53 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~   53 (369)
                      ..|.|++|+||||+++.+|+.|++.--+.+
T Consensus         4 I~LiG~mGsGKstiGk~La~~l~~~fiD~D   33 (169)
T PRK13949          4 IFLVGYMGAGKTTLGKALARELGLSFIDLD   33 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEECC
T ss_conf             899799999889999999999599979784


No 291
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939    This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=96.12  E-value=0.0038  Score=43.35  Aligned_cols=90  Identities=24%  Similarity=0.292  Sum_probs=50.3

Q ss_pred             HHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             98287670620107879888899999999961468777886658789997799997798778222453322334555665
Q 537021.9.peg.4   15 FKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREI   94 (369)
Q Consensus        15 ~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l   94 (369)
                      ++.|-|-+   ++||||+|||+++...|.    .+.                   ..|  -.+++||-.+--++|-+|.+
T Consensus         9 vE~G~iTQ---iYGp~G~GKTn~c~~~a~----~a~-------------------~~G--k~v~YiDTEGGLS~ER~~q~   60 (223)
T TIGR02237         9 VERGIITQ---IYGPPGSGKTNICLILAV----NAA-------------------RQG--KKVVYIDTEGGLSPERFKQI   60 (223)
T ss_pred             CCCCEEEE---EECCCCCCHHHHHHHHHH----HHH-------------------HCC--CCEEEEECCCCCHHHHHHHH
T ss_conf             12035889---875899867899999999----998-------------------618--95899962898328999998


Q ss_pred             HHHHHHHHHCCCCCEEEEECHHHCCCCH--HHHHHHHHHHC
Q ss_conf             5544565420465237751156648001--67899999721
Q 537021.9.peg.4   95 IDQIYYKPISARFRVYIMDEVQMLSTAA--FNGLLKTLEEP  133 (369)
Q Consensus        95 ~~~~~~~p~~~~~kv~iid~a~~m~~~a--~NaLLK~lEEP  133 (369)
                      .+.-..-|-..--+++| -+++.++.|.  -....|+++.-
T Consensus        61 ~~~~~~D~e~~~~~~iv-~~~~~f~eQ~~ai~~~~~~~~~~  100 (223)
T TIGR02237        61 AEDRALDPERVLSNVIV-FEVFDFDEQEVAIQKTSKLIDRD  100 (223)
T ss_pred             HHCCCCCHHHHHCCEEE-ECCCCHHHHHHHHHHHHHHHHCC
T ss_conf             63058898888415355-23535678999999999998606


No 292
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria.  Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.09  E-value=0.016  Score=38.72  Aligned_cols=23  Identities=30%  Similarity=0.483  Sum_probs=18.8

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             62010787988889999999996
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      -+-+.||.|+||||+++.+...+
T Consensus        29 ~v~ivG~sGsGKSTLl~ll~gl~   51 (236)
T cd03253          29 KVAIVGPSGSGKSTILRLLFRFY   51 (236)
T ss_pred             EEEEECCCCCCHHHHHHHHCCCC
T ss_conf             99999999998999999974385


No 293
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.07  E-value=0.046  Score=35.36  Aligned_cols=137  Identities=15%  Similarity=0.188  Sum_probs=63.3

Q ss_pred             HHHHHHCCCCC--EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH-HHHCCCCCCCC---------
Q ss_conf             99999828767--0620107879888899999999961468777886658789997799-99779877822---------
Q 537021.9.peg.4   11 LTNAFKSGRIA--QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQ-AIIRGNHVDVV---------   78 (369)
Q Consensus        11 l~~~~~~~~~~--ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~-~i~~~~~~d~~---------   78 (369)
                      |-+.+. |.+|  ..+|..|.+|+||+.++.-|+... |.++..... ...-.+...-. .+.+ =..|+.         
T Consensus        13 ld~~lg-gGip~gs~~li~G~~GtGKsi~~~~~~~~~-l~~g~~~~y-is~e~t~~~~i~qm~s-~g~di~~~~~~G~l~   88 (230)
T PRK08533         13 LHKRLG-GGIPFGSIILIEGDESTGKSILSQRLAYGF-LQNGYSVSY-VSSQLTTTEFIKQMMS-LGYDINKKLISGKLL   88 (230)
T ss_pred             HHHHHC-CCCCCCCEEEEECCCCCCHHHHHHHHHHHH-HHCCCEEEE-EEECCCHHHHHHHHHH-CCCCCHHHHHCCCEE
T ss_conf             788717-898898489998689987899999999999-878986999-9943899999999998-699817997579679


Q ss_pred             CCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHC-----CCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCH
Q ss_conf             245332-2334555665554456542046523775115664-----800167899999721221114665067543303
Q 537021.9.peg.4   79 ELDAAS-HTSIDDVREIIDQIYYKPISARFRVYIMDEVQML-----STAAFNGLLKTLEEPPPHVKFIFATTEIRKIPI  151 (369)
Q Consensus        79 e~~~~s-~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m-----~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~  151 (369)
                      .++... ..+..+-+++++.+--.+..-...|+|||....+     +.++...++..+..--+.-..|++|-+|..+.+
T Consensus        89 ~i~~~~~~~~~~~~~~~L~~ll~~~~~~~~dvIIIDSlS~l~~~~~~~~~~~~~~~~lk~l~s~gktIilTv~p~~~~e  167 (230)
T PRK08533         89 YIPVYPLLSGNSEKRDFLDKLMNTRRFYEKDVVIIDSLSSLVSRDASEVQIRDLMAFFKRISSLNKVIILTANPKELPE  167 (230)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH
T ss_conf             9961343354045789999997326643798999905318851677789999999999999858988999956331362


No 294
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.06  E-value=0.037  Score=36.07  Aligned_cols=15  Identities=13%  Similarity=0.113  Sum_probs=9.1

Q ss_pred             CHHHHHHHHHHHHHH
Q ss_conf             889999999999953
Q 537021.9.peg.4  333 RPMEAVEMVLIRLAH  347 (369)
Q Consensus       333 np~L~lE~lLlkL~~  347 (369)
                      -+|+++=.++++=..
T Consensus       491 rQRiaiARAll~~~~  505 (588)
T PRK11174        491 AQRLALARALLQPCQ  505 (588)
T ss_pred             HHHHHHHHHHHCCCC
T ss_conf             999999999837989


No 295
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export.  They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins.  The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities.  The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD).  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.06  E-value=0.0092  Score=40.49  Aligned_cols=118  Identities=14%  Similarity=0.182  Sum_probs=61.1

Q ss_pred             EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH---HHHHHHC-----CCCCCCCCCCCCCCC-CHHHHH
Q ss_conf             0620107879888899999999961468777886658789997---7999977-----987782224533223-345556
Q 537021.9.peg.4   22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGE---HCQAIIR-----GNHVDVVELDAASHT-SIDDVR   92 (369)
Q Consensus        22 ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~---~c~~i~~-----~~~~d~~e~~~~s~~-~id~ir   92 (369)
                      .-+.+.||.|+||+|+.+.++..+....+...     ..|..-   +-..+..     .+.|-++.-.-..|+ +--|-+
T Consensus        29 e~i~ivG~sGsGKSTLl~ll~gl~~p~~G~I~-----i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~tv~eNiLSgGq~Q  103 (171)
T cd03228          29 EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL-----IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQ  103 (171)
T ss_pred             CEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE-----ECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHCCCHHHHH
T ss_conf             89999999998399999999767758974899-----9999988599899863189996668437577999774488999


Q ss_pred             HHHHHHHHHHHCCCCCEEEEECHH-HCCCCHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf             655544565420465237751156-6480016789999972122111466506754
Q 537021.9.peg.4   93 EIIDQIYYKPISARFRVYIMDEVQ-MLSTAAFNGLLKTLEEPPPHVKFIFATTEIR  147 (369)
Q Consensus        93 ~l~~~~~~~p~~~~~kv~iid~a~-~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~  147 (369)
                      .+   +--+..-.+.+|+|+||+- .|-..+...+.+.+.+-..+...|++|++++
T Consensus       104 ri---~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~Tvi~vtH~~~  156 (171)
T cd03228         104 RI---AIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLS  156 (171)
T ss_pred             HH---HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHH
T ss_conf             99---999999748998999577667998999999999999809998999957999


No 296
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.04  E-value=0.014  Score=39.14  Aligned_cols=45  Identities=22%  Similarity=0.313  Sum_probs=32.5

Q ss_pred             CCCHHH----HHHHHHHHHHCCCCC-EEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             928489----999999999828767-062010787988889999999996
Q 537021.9.peg.4    1 MIGQKP----MIKTLTNAFKSGRIA-QSYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus         1 iiGq~~----~~~~l~~~~~~~~~~-ha~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      +.|++.    ++..++.+.+.+... ..++|.||+|.||+|+++.+-+.+
T Consensus        53 ~fG~e~~i~~~V~~~k~AA~g~~~~k~IllL~GPvGsGKStl~~~Lk~~l  102 (361)
T smart00763       53 FFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL  102 (361)
T ss_pred             HCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             11648999999999999984467125699998899887799999999999


No 297
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules.  Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells.  Subsequently, virus-infected or malignantly transformed cells can be eliminated.  TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.01  E-value=0.021  Score=37.86  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=19.0

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             62010787988889999999996
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      -+-+.||.|+||+|+++.++..+
T Consensus        42 ~vaIvG~sGsGKSTL~~ll~gl~   64 (226)
T cd03248          42 VTALVGPSGSGKSTVVALLENFY   64 (226)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCC
T ss_conf             99999999984999999996454


No 298
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.01  E-value=0.066  Score=34.21  Aligned_cols=24  Identities=29%  Similarity=0.493  Sum_probs=18.9

Q ss_pred             EEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             062010787988889999999996
Q 537021.9.peg.4   22 QSYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        22 ha~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      .-+.+.||.|+||||+.+.++..+
T Consensus        37 e~vaivG~nGsGKSTLlk~l~Gll   60 (273)
T PRK13632         37 EYVAILGHNGSGKSTISKILTGLL   60 (273)
T ss_pred             CEEEEECCCCCHHHHHHHHHHCCC
T ss_conf             899999999986999999997387


No 299
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.00  E-value=0.068  Score=34.08  Aligned_cols=37  Identities=22%  Similarity=0.352  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             9999999999828767062010787988889999999996
Q 537021.9.peg.4    6 PMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus         6 ~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      .+...|+.+|+.++   ..+++|..|+||||+.+++...+
T Consensus       150 ~~~~fL~~aV~~r~---NIlIsGgTGSGKTTllnALl~~I  186 (343)
T PRK13851        150 DLEAFLHACVVGRL---TMLLCGPTGSGKTTMSKTLISAI  186 (343)
T ss_pred             HHHHHHHHHHHCCC---CEEEECCCCCCHHHHHHHHHHCC
T ss_conf             79999999997698---89998889861999999999628


No 300
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.99  E-value=0.066  Score=34.17  Aligned_cols=22  Identities=27%  Similarity=0.557  Sum_probs=18.5

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHH
Q ss_conf             6201078798888999999999
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARS   44 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~   44 (369)
                      -++++||.|+||+|++..+.+.
T Consensus         3 livl~GpsG~GK~tl~~~l~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
T ss_conf             9999899988999999999976


No 301
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780    The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane.    This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=95.97  E-value=0.017  Score=38.63  Aligned_cols=28  Identities=36%  Similarity=0.430  Sum_probs=24.4

Q ss_pred             CCCCEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             8767062010787988889999999996
Q 537021.9.peg.4   18 GRIAQSYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        18 ~~~~ha~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      ++-|+-+||.|=-|+||||++=-+|..|
T Consensus        99 ~~~P~vilmvGLQGsGKTTt~gKLA~~l  126 (439)
T TIGR00959        99 EKRPTVILMVGLQGSGKTTTAGKLALYL  126 (439)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             7868389973137885788999999999


No 302
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli.  The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane.  HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB.  This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport.  Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.96  E-value=0.028  Score=36.95  Aligned_cols=28  Identities=25%  Similarity=0.339  Sum_probs=20.9

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             6201078798888999999999614687
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSLNYKTA   50 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~   50 (369)
                      -+-+.||.|+||+|+++.+...+....+
T Consensus        30 ~vaivG~sGsGKSTll~ll~gl~~p~~G   57 (237)
T cd03252          30 VVGIVGRSGSGKSTLTKLIQRFYVPENG   57 (237)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCC
T ss_conf             9999999998599999999677657987


No 303
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=95.96  E-value=0.039  Score=35.91  Aligned_cols=40  Identities=20%  Similarity=0.212  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             9999999998287670620107879888899999999961
Q 537021.9.peg.4    7 MIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLN   46 (369)
Q Consensus         7 ~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~   46 (369)
                      ....|...+....=+|-.=++||||.||+|+.-.|++.+-
T Consensus        35 ~~~ll~~l~~~~g~a~~iGiTG~pG~GKStli~~l~~~~~   74 (325)
T PRK09435         35 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLI   74 (325)
T ss_pred             HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             9999998630179825997427999868899999999999


No 304
>KOG2543 consensus
Probab=95.91  E-value=0.041  Score=35.68  Aligned_cols=161  Identities=18%  Similarity=0.217  Sum_probs=86.7

Q ss_pred             CHHHHHHHHHHHHHCC--CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH----HHCC----
Q ss_conf             8489999999999828--76706201078798888999999999614687778866587899977999----9779----
Q 537021.9.peg.4    3 GQKPMIKTLTNAFKSG--RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQA----IIRG----   72 (369)
Q Consensus         3 Gq~~~~~~l~~~~~~~--~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~----i~~~----   72 (369)
                      +-+.-+..|...+-++  .+|-...++|-.|+|||.+.|.+=+.+|-++.-.      -|-.|-+-+-    |...    
T Consensus        10 ~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~------n~~ecft~~~lle~IL~~~~~~   83 (438)
T KOG2543          10 CRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWL------NCVECFTYAILLEKILNKSQLA   83 (438)
T ss_pred             CHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEE------EHHHHCCHHHHHHHHHHHHCCC
T ss_conf             4689999999984789866651579961478745599999986037863054------1577516799999999873567


Q ss_pred             -CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH--CCCCCEEEE-ECHHHCCCCHHH---HHHHHHHH-CCCCCCEEEEEC
Q ss_conf             -8778222453322334555665554456542--046523775-115664800167---89999972-122111466506
Q 537021.9.peg.4   73 -NHVDVVELDAASHTSIDDVREIIDQIYYKPI--SARFRVYIM-DEVQMLSTAAFN---GLLKTLEE-PPPHVKFIFATT  144 (369)
Q Consensus        73 -~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~--~~~~kv~ii-d~a~~m~~~a~N---aLLK~lEE-Pp~~~~fil~t~  144 (369)
                       .-+|..+.+      -+-+-+.+..+..-|.  +-+++|||| |.||.++.-.+|   .|++.=|= +-+.+.|||..+
T Consensus        84 d~dg~~~~~~------~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~  157 (438)
T KOG2543          84 DKDGDKVEGD------AENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAP  157 (438)
T ss_pred             CCCHHHHHHH------HHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             8740555427------9999999999984477644674499997477766306507889999899873777369998326


Q ss_pred             CCCCCCH--HHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             7543303--567543332102454001356787
Q 537021.9.peg.4  145 EIRKIPI--TVLSRCQRFDLHRISIGDLIELFT  175 (369)
Q Consensus       145 ~~~~ll~--TI~SRcq~~~f~~l~~~~i~~~L~  175 (369)
                      .+++.-.  |=.+---.+.|+..+.+++...|.
T Consensus       158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~  190 (438)
T KOG2543         158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILS  190 (438)
T ss_pred             CCHHHHHCCCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf             667775214677786478538778899999984


No 305
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis.  The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes.  CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space.  In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.91  E-value=0.012  Score=39.60  Aligned_cols=30  Identities=23%  Similarity=0.400  Sum_probs=23.0

Q ss_pred             EEEHHCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             062010787988889999999996146877
Q 537021.9.peg.4   22 QSYMLSGTRGIGKTTTARIIARSLNYKTAH   51 (369)
Q Consensus        22 ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~   51 (369)
                      .-+-+.||.|+||+|+.++++..+....+.
T Consensus        29 e~~aivG~sGsGKSTLl~~l~G~~~p~~G~   58 (178)
T cd03247          29 EKIALLGRSGSGKSTLLQLLTGDLKPQQGE   58 (178)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHCCCCCCCE
T ss_conf             999999999875999999998617667886


No 306
>KOG1805 consensus
Probab=95.90  E-value=0.014  Score=39.13  Aligned_cols=141  Identities=24%  Similarity=0.277  Sum_probs=72.7

Q ss_pred             HHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCC----------CCCC--CCCCCCCHHHHHHHCCCCC
Q ss_conf             999999998287670620107879888899999999961468777----------8866--5878999779999779877
Q 537021.9.peg.4    8 IKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHI----------DVPT--VEFEGFGEHCQAIIRGNHV   75 (369)
Q Consensus         8 ~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~----------~~~~--~~~c~~c~~c~~i~~~~~~   75 (369)
                      .+++.+++...  .+ .|..|.||+||||+.-.+-|.|.......          +...  ..+||.-----.-.+..||
T Consensus       675 r~A~~k~L~ae--dy-~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~~kih~  751 (1100)
T KOG1805         675 RQALLKALAAE--DY-ALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSEEKIHP  751 (1100)
T ss_pred             HHHHHHHHHCC--CH-HEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHCCCCCEEECCCCCCCCH
T ss_conf             99999987303--32-2032699898122599999999973881899850567889999987506711034487222446


Q ss_pred             CCCCCC---CCCCCCHHHHHHHHHHHHH---------HHHC--CCCCEEEEECHHHCCCCHHHHHHHHHHHCCCC-CCEE
Q ss_conf             822245---3322334555665554456---------5420--46523775115664800167899999721221-1146
Q 537021.9.peg.4   76 DVVELD---AASHTSIDDVREIIDQIYY---------KPIS--ARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPH-VKFI  140 (369)
Q Consensus        76 d~~e~~---~~s~~~id~ir~l~~~~~~---------~p~~--~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~-~~fi  140 (369)
                      |+.|..   +.|--++++++...+..+.         .|.-  -.|-++|||||-++...-.   |-    |-.. -.|+
T Consensus       752 ~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf~~R~FD~cIiDEASQI~lP~~---Lg----PL~~s~kFV  824 (1100)
T KOG1805         752 DVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLFVNRQFDYCIIDEASQILLPLC---LG----PLSFSNKFV  824 (1100)
T ss_pred             HHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCEEEECCCCCCCCCHH---HH----HHHHCCEEE
T ss_conf             89987123445453399999972897679997157886555214267899865111143421---21----021123589


Q ss_pred             EEECCCCCCCHHHHHHHHH
Q ss_conf             6506754330356754333
Q 537021.9.peg.4  141 FATTEIRKIPITVLSRCQR  159 (369)
Q Consensus       141 l~t~~~~~ll~TI~SRcq~  159 (369)
                      |+. ++.+|+|-.+||=-+
T Consensus       825 LVG-Dh~QLpPLV~s~ear  842 (1100)
T KOG1805         825 LVG-DHYQLPPLVRSSEAR  842 (1100)
T ss_pred             EEC-CCCCCCCCCCCHHHH
T ss_conf             964-633378630364555


No 307
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.90  E-value=0.018  Score=38.36  Aligned_cols=27  Identities=30%  Similarity=0.372  Sum_probs=20.6

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             201078798888999999999614687
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLNYKTA   50 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~   50 (369)
                      .-+-||.||||+|+=|++|--.....+
T Consensus        32 vsilGpSGcGKSTLLriiAGL~~p~~G   58 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLEKPTSG   58 (248)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf             999899978899999999687877775


No 308
>KOG4658 consensus
Probab=95.90  E-value=0.15  Score=31.55  Aligned_cols=175  Identities=19%  Similarity=0.263  Sum_probs=94.4

Q ss_pred             CCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC-CC
Q ss_conf             28489999999999828767062010787988889999999996146877788665878999779999779877822-24
Q 537021.9.peg.4    2 IGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVV-EL   80 (369)
Q Consensus         2 iGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~-e~   80 (369)
                      ||++..++.+.+.+-.....+ .=++|..|+||||+|+-+=   |-..                    .-++|.|.+ ++
T Consensus       161 VG~e~~~ekl~~~L~~d~~~i-vgi~GMGGvGKTTL~~qi~---N~~~--------------------~v~~~Fd~~iWV  216 (889)
T KOG4658         161 VGLETMLEKLWNRLMEDDVGI-VGIYGMGGVGKTTLARQIF---NKFD--------------------EVGNHFDGVIWV  216 (889)
T ss_pred             CCHHHHHHHHHHHHCCCCCCE-EEEECCCCCCHHHHHHHHH---HCCH--------------------HHCCCCCEEEEE
T ss_conf             468899999999840479968-9998897034999999984---1331--------------------223578749999


Q ss_pred             CCCCC----------------C--CHH--HHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCC---
Q ss_conf             53322----------------3--345--556655544565420465237751156648001678999997212211---
Q 537021.9.peg.4   81 DAASH----------------T--SID--DVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHV---  137 (369)
Q Consensus        81 ~~~s~----------------~--~id--~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~---  137 (369)
                      --...                .  .-+  .+.++...+ +.-.++++=++++|+...  +.+    ++-+.-|.+..   
T Consensus       217 ~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i-~~~L~~krfllvLDDIW~--~~d----w~~I~~~~p~~~~g  289 (889)
T KOG4658         217 VVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKL-LNLLEGKRFLLVLDDIWE--EVD----WDKIGVPFPSRENG  289 (889)
T ss_pred             EECCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH-HHHHCCCCEEEEEECCCC--CCC----HHHHCCCCCCCCCC
T ss_conf             97763108889999999844687100010288999999-998556855999825675--012----87718999875687


Q ss_pred             -CEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC--C-CHHHHHHHHHCCCCCCCHHHHCCC
Q ss_conf             -14665067543303567543332102454001356787643101345--6-256644565316764200110001
Q 537021.9.peg.4  138 -KFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIE--F-DPEAVAMIARASDGSARDGLSLLD  209 (369)
Q Consensus       138 -~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~--~-d~~~l~~ia~~s~GslR~Al~lLe  209 (369)
                       ..+|+|.+ ..+-.-.-.++-.++.+-+++++.=..+.+++-.-...  . =++..+.+|..+.|.+- |++.+.
T Consensus       290 ~KvvlTTRs-~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPL-Al~viG  363 (889)
T KOG4658         290 SKVVLTTRS-EEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPL-ALNVLG  363 (889)
T ss_pred             EEEEEEECC-HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHH-HHHHHH
T ss_conf             289999645-87763324778730054168300299999873664444452079998999877289379-999999


No 309
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.90  E-value=0.017  Score=38.49  Aligned_cols=24  Identities=42%  Similarity=0.661  Sum_probs=19.6

Q ss_pred             EEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             062010787988889999999996
Q 537021.9.peg.4   22 QSYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        22 ha~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      ..+.+.||.|+||||+.++++-.+
T Consensus        29 ei~~l~G~NGaGKTTLlk~i~Gl~   52 (206)
T PRK13539         29 EALVLTGPNGSGKTTLLRLLAGLL   52 (206)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             499998999998999999995887


No 310
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1.  In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD.  MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.87  E-value=0.03  Score=36.70  Aligned_cols=23  Identities=30%  Similarity=0.541  Sum_probs=18.8

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             62010787988889999999996
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      -+-+.||.|+||+|+++.+...+
T Consensus        31 ~iaIvG~sGsGKSTLl~ll~gl~   53 (238)
T cd03249          31 TVALVGSSGCGKSTVVSLLERFY   53 (238)
T ss_pred             EEEEECCCCCCHHHHHHHHHHCC
T ss_conf             99999999998999999982386


No 311
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain.  They export degradative enzymes by using a type I protein secretion system and  lack an N-terminal signal peptide, but contain a C-terminal secretion signal.  The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP).  For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli.  The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior.  HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels.  The spectrum of transport substra
Probab=95.87  E-value=0.013  Score=39.34  Aligned_cols=116  Identities=17%  Similarity=0.188  Sum_probs=55.8

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH---HHHHHC-----CCCCCCCCCCCCCCC-CHHHH-H
Q ss_conf             6201078798888999999999614687778866587899977---999977-----987782224533223-34555-6
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEH---CQAIIR-----GNHVDVVELDAASHT-SIDDV-R   92 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~---c~~i~~-----~~~~d~~e~~~~s~~-~id~i-r   92 (369)
                      -+-+.||.|+||+|+++.++..+....+...     .+|..-+   -..+..     .+.|.++.-.-..|+ +--|- |
T Consensus        30 ~vaIvG~sGsGKSTLl~ll~gl~~p~~G~i~-----i~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~ti~eNiLSGGQkQR  104 (173)
T cd03246          30 SLAIIGPSGSGKSTLARLILGLLRPTSGRVR-----LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQR  104 (173)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCEEE-----ECCEECCCCCHHHHHCCEEEEECCCEECCCCHHHHCCCHHHHHH
T ss_conf             9999999998099999999666667999899-----99999332899898420899908883677758997676999999


Q ss_pred             HHHHHHHHHHHCCCCCEEEEECHH-HCCCCHHHHHHHHHHHC-CCCCCEEEEECCCC
Q ss_conf             655544565420465237751156-64800167899999721-22111466506754
Q 537021.9.peg.4   93 EIIDQIYYKPISARFRVYIMDEVQ-MLSTAAFNGLLKTLEEP-PPHVKFIFATTEIR  147 (369)
Q Consensus        93 ~l~~~~~~~p~~~~~kv~iid~a~-~m~~~a~NaLLK~lEEP-p~~~~fil~t~~~~  147 (369)
                      --+.    +..-.+.+|+|+||+- .+-..+...+...+++- ..+...|++|++++
T Consensus       105 valA----Ral~~~p~ililDEpts~LD~~~e~~i~~~l~~l~~~~~Tvi~vtH~~~  157 (173)
T cd03246         105 LGLA----RALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE  157 (173)
T ss_pred             HHHH----HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf             9999----9982799999996876689989999999999978648989999847999


No 312
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome.  The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation.  To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes.  X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family.  The disease is characterized by a striking and unpredictable variation in phenotypic expression.  Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.86  E-value=0.0069  Score=41.42  Aligned_cols=106  Identities=16%  Similarity=0.251  Sum_probs=53.5

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH------
Q ss_conf             62010787988889999999996146877788665878999779999779877822245332233455566555------
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIID------   96 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~------   96 (369)
                      -+.+.||.|+||||+.++++..+-...+....+     +....   ..-.++|-+..         ..+|+.+.      
T Consensus        29 ~v~i~G~sGsGKSTLl~~l~Gl~~~~~G~i~~~-----~~~~i---~~v~Q~~~l~~---------~tl~e~l~~p~~~~   91 (166)
T cd03223          29 RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMP-----EGEDL---LFLPQRPYLPL---------GTLREQLIYPWDDV   91 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHCCCCCCCCCEEEEC-----CCCCE---EEECCCCCCCC---------CCHHHHHHCCCCCC
T ss_conf             999995899988999999869876998679976-----99879---99856466588---------75999963615467


Q ss_pred             -------HHHH-HHHCCCCCEEEEECHH-HCCCCHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf             -------4456-5420465237751156-6480016789999972122111466506754
Q 537021.9.peg.4   97 -------QIYY-KPISARFRVYIMDEVQ-MLSTAAFNGLLKTLEEPPPHVKFIFATTEIR  147 (369)
Q Consensus        97 -------~~~~-~p~~~~~kv~iid~a~-~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~  147 (369)
                             .+.+ +..-.+.+|+|+||+- .|-.++.+.+++.+.+..  +..|++|++++
T Consensus        92 LSGGqkQRvalARal~~~p~iliLDEpTs~LD~~~~~~l~~~l~~~~--~Tvi~VtH~~~  149 (166)
T cd03223          92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG--ITVISVGHRPS  149 (166)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCC--CEEEEEECCHH
T ss_conf             89999999999999964999999758533289999999999999779--98999943469


No 313
>PHA00350 putative assembly protein
Probab=95.85  E-value=0.016  Score=38.65  Aligned_cols=126  Identities=18%  Similarity=0.299  Sum_probs=67.5

Q ss_pred             EHHCCCCCCCHHHHHHHHH--HHHCCCCCCCCCCCCCCCCC-CHHHHHHHCCCCCC---CCCCCCCCCCCHHHHHHHHHH
Q ss_conf             2010787988889999999--99614687778866587899-97799997798778---222453322334555665554
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIA--RSLNYKTAHIDVPTVEFEGF-GEHCQAIIRGNHVD---VVELDAASHTSIDDVREIIDQ   97 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A--~~l~c~~~~~~~~~~~~c~~-c~~c~~i~~~~~~d---~~e~~~~s~~~id~ir~l~~~   97 (369)
                      .+.+|++|+||+.-|-+|-  -+|. +.+...  | ..-|. -+.-.++.. .+||   ++.|+-.+..+++.++   .+
T Consensus         4 ~~~~G~pGSyKS~~av~~~ilPALk-~GR~Vi--T-Ni~gl~le~i~k~~~-~~p~~~~liri~~~~~~~~~~~~---~~   75 (402)
T PHA00350          4 YAIVGRPGSYKSYEAVVYHIIPALK-DGRKVI--T-NIPGLNLDVFEKVFG-EFPDTAELIRIVDRNLEDFESMN---RP   75 (402)
T ss_pred             EEEECCCCCCCCEEEEHHHHHHHHH-CCCEEE--E-CCCCCCHHHHHHHCC-CCCCCHHEEEEECCCCCCHHHHH---CC
T ss_conf             9982599997660110867688985-699899--7-789988899998717-88360322787437864222220---20


Q ss_pred             HHHHHHCCCCCEEEEECHHHC-CCCHHHHHHHHHH-----------HCC------------CCCCEEEEECCCCCCCHHH
Q ss_conf             456542046523775115664-8001678999997-----------212------------2111466506754330356
Q 537021.9.peg.4   98 IYYKPISARFRVYIMDEVQML-STAAFNGLLKTLE-----------EPP------------PHVKFIFATTEIRKIPITV  153 (369)
Q Consensus        98 ~~~~p~~~~~kv~iid~a~~m-~~~a~NaLLK~lE-----------EPp------------~~~~fil~t~~~~~ll~TI  153 (369)
                      ..-+|. |  -.|+|||||+. +...--.-+|++-           +-|            -+.=+||+|.++.+|-.-|
T Consensus        76 f~W~p~-g--aliviDE~q~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~HRh~~wDI~L~Tp~~~~i~~~i  152 (402)
T PHA00350         76 FSWRPR-G--ALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRHRHYNWDIILLTPNIRKIHSDI  152 (402)
T ss_pred             CCCCCC-C--CEEEEECHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHH
T ss_conf             123677-7--7899963133246543300233212666420002678845699999973215866799678878985999


Q ss_pred             HHHHHHH
Q ss_conf             7543332
Q 537021.9.peg.4  154 LSRCQRF  160 (369)
Q Consensus       154 ~SRcq~~  160 (369)
                      ++.++.-
T Consensus       153 r~~~e~~  159 (402)
T PHA00350        153 RAMIEMT  159 (402)
T ss_pred             HHHHHHH
T ss_conf             9999887


No 314
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.81  E-value=0.031  Score=36.65  Aligned_cols=15  Identities=20%  Similarity=0.193  Sum_probs=8.9

Q ss_pred             CHHHHHHHHHHHHHH
Q ss_conf             889999999999953
Q 537021.9.peg.4  333 RPMEAVEMVLIRLAH  347 (369)
Q Consensus       333 np~L~lE~lLlkL~~  347 (369)
                      -+|+++=.++++=..
T Consensus       477 rQRialARAll~~p~  491 (585)
T PRK13657        477 RQRLAIARALLKDPP  491 (585)
T ss_pred             HHHHHHHHHHHCCCC
T ss_conf             999999999946989


No 315
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.79  E-value=0.064  Score=34.30  Aligned_cols=35  Identities=29%  Similarity=0.476  Sum_probs=25.2

Q ss_pred             HHHHHHCCCCCE-EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             999998287670-62010787988889999999996
Q 537021.9.peg.4   11 LTNAFKSGRIAQ-SYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        11 l~~~~~~~~~~h-a~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      |-+.+--|=+|- ..|+.|.||+||+|+..-.|..+
T Consensus        79 lDRVLGGGlV~GS~iLlgGePGIGKSTLlLQ~a~~l  114 (454)
T PRK11823         79 LDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAAL  114 (454)
T ss_pred             HHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             652215872066489950799888999999999998


No 316
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.79  E-value=0.053  Score=34.87  Aligned_cols=23  Identities=35%  Similarity=0.444  Sum_probs=19.2

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             20107879888899999999961
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLN   46 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~   46 (369)
                      .|+.||+|+|||+++.-+|....
T Consensus         2 ~li~g~~g~GKttl~~~~~~~~~   24 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNIA   24 (165)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
T ss_conf             89998999989999999999987


No 317
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.78  E-value=0.056  Score=34.74  Aligned_cols=59  Identities=12%  Similarity=0.086  Sum_probs=36.3

Q ss_pred             CCCCCEEEEECHHHCCCC-HHHHHHHHHHH-CCCCCCEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf             046523775115664800-16789999972-122111466506754330356754333210
Q 537021.9.peg.4  104 SARFRVYIMDEVQMLSTA-AFNGLLKTLEE-PPPHVKFIFATTEIRKIPITVLSRCQRFDL  162 (369)
Q Consensus       104 ~~~~kv~iid~a~~m~~~-a~NaLLK~lEE-Pp~~~~fil~t~~~~~ll~TI~SRcq~~~f  162 (369)
                      -.++++++||-+-+=..+ ....-|+.|.. +.-+++++|.++.-...+..|..+-+.+.+
T Consensus       424 l~~~~lvliDTaG~~~rd~~~~~~~~~l~~~~~~~~~Lvl~a~~~~~~l~~~~~~~~~~~~  484 (557)
T PRK12727        424 LRDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRFAHAKP  484 (557)
T ss_pred             HCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCC
T ss_conf             3699989994999884699999999987514776359999688998999999998537998


No 318
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=95.74  E-value=0.022  Score=37.74  Aligned_cols=125  Identities=22%  Similarity=0.262  Sum_probs=69.2

Q ss_pred             CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC-----CCCHHHHHH
Q ss_conf             767062010787988889999999996146877788665878999779999779877822245332-----233455566
Q 537021.9.peg.4   19 RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAAS-----HTSIDDVRE   93 (369)
Q Consensus        19 ~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s-----~~~id~ir~   93 (369)
                      .=|-|+++.|+||.|||++++.+...+.-    .+...+++    +    -....||++.++....     ...-.+.+.
T Consensus        10 ~~Pkai~laG~pGAGKS~~~~~~~~~~~~----~~~v~In~----D----~~r~~~P~y~~l~~~~~~~~~~~~~~~a~~   77 (191)
T pfam06414        10 ERPVAVLLGGQPGAGKTELARALLEELGG----GNVVRIDP----D----ELRTYHPDYDELQKADPKDASELTQPDASR   77 (191)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHCCC----CCCEEECC----H----HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             69879999579988889999999875378----99389713----5----878877747865540767789998999999


Q ss_pred             HHHHHHHHHHCCCCCEEEEECHHHC-CCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf             5554456542046523775115664-8001678999997212211146650675433035675433
Q 537021.9.peg.4   94 IIDQIYYKPISARFRVYIMDEVQML-STAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQ  158 (369)
Q Consensus        94 l~~~~~~~p~~~~~kv~iid~a~~m-~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq  158 (369)
                      +.+.+.-.-.++++- +|||..  | +.+..-.+.+.+.+-.-.|..+++++.++.=..-+..|-.
T Consensus        78 ~~~~~~~~a~~~r~n-~iiegT--~~~~~~~~~~~~~lk~~GY~v~v~~Va~~~e~S~~r~~~Ry~  140 (191)
T pfam06414        78 WVEKLIDYAIERGYN-IILEGT--LRSPDVARKLARKLKAAGYEVEVYVVAVPPELSWLGVLDRYE  140 (191)
T ss_pred             HHHHHHHHHHHCCCC-EEEECC--CCCHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHH
T ss_conf             999999999975999-898577--789799999999999789979999998899999999999998


No 319
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.72  E-value=0.036  Score=36.17  Aligned_cols=15  Identities=13%  Similarity=0.346  Sum_probs=8.9

Q ss_pred             CEEEEECHHHCCCCH
Q ss_conf             237751156648001
Q 537021.9.peg.4  108 RVYIMDEVQMLSTAA  122 (369)
Q Consensus       108 kv~iid~a~~m~~~a  122 (369)
                      ++++.|++.....-.
T Consensus        97 ~~~v~dp~~g~~~l~  111 (709)
T COG2274          97 KVVVLDPAKGIRRLS  111 (709)
T ss_pred             EEEEEECCCCCEECC
T ss_conf             599981787719817


No 320
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.70  E-value=0.034  Score=36.33  Aligned_cols=28  Identities=32%  Similarity=0.464  Sum_probs=21.6

Q ss_pred             HHCCCCC--EEEHHCCCCCCCHHHHHHHHH
Q ss_conf             9828767--062010787988889999999
Q 537021.9.peg.4   15 FKSGRIA--QSYMLSGTRGIGKTTTARIIA   42 (369)
Q Consensus        15 ~~~~~~~--ha~lf~G~~G~GK~~~a~~~A   42 (369)
                      +-.|-+|  +.||.+|+||+|||++|.-|.
T Consensus        16 iL~GGlp~g~~~LV~G~pGsGKTtla~QfL   45 (501)
T PRK09302         16 ITNGGLPKGRPTLVSGTAGTGKTLFALQFL   45 (501)
T ss_pred             HHCCCCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf             854898899779998389999999999999


No 321
>PRK13544 consensus
Probab=95.65  E-value=0.016  Score=38.66  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=19.3

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             62010787988889999999996
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      -+-+.||.|+||||+-+++|..+
T Consensus        29 i~~l~G~NGsGKSTLl~~i~Gl~   51 (208)
T PRK13544         29 LTLVIGNNGSGKTSLLRLLAGLI   51 (208)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             99999999998999999995880


No 322
>cd01393 recA_like RecA is a  bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response.  RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57.  Archaea have the RecA-like homologs radA and radB.
Probab=95.65  E-value=0.051  Score=35.02  Aligned_cols=27  Identities=30%  Similarity=0.305  Sum_probs=20.7

Q ss_pred             CCCC--EEEHHCCCCCCCHHHHHHHHHHH
Q ss_conf             8767--06201078798888999999999
Q 537021.9.peg.4   18 GRIA--QSYMLSGTRGIGKTTTARIIARS   44 (369)
Q Consensus        18 ~~~~--ha~lf~G~~G~GK~~~a~~~A~~   44 (369)
                      |-+|  .-..++||+|+|||++|.-+|..
T Consensus        14 GGip~G~ItEi~G~~gsGKT~l~lqla~~   42 (226)
T cd01393          14 GGIPTGRITEIFGEFGSGKTQLCLQLAVE   42 (226)
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             99888839999999999899999999999


No 323
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=95.64  E-value=0.24  Score=30.09  Aligned_cols=27  Identities=30%  Similarity=0.439  Sum_probs=19.8

Q ss_pred             CCCCCEEEHHCCCCCCCHHHHHHHHHHH
Q ss_conf             2876706201078798888999999999
Q 537021.9.peg.4   17 SGRIAQSYMLSGTRGIGKTTTARIIARS   44 (369)
Q Consensus        17 ~~~~~ha~lf~G~~G~GK~~~a~~~A~~   44 (369)
                      .+-++| -+..||.|.|||++--.++..
T Consensus       485 v~DvGH-TlIiGpTGaGKTvll~fL~aQ  511 (852)
T PRK13891        485 VRDLGH-TFMFGPTGAGKSTHLGIIAAQ  511 (852)
T ss_pred             CCCCCC-EEEECCCCCCHHHHHHHHHHH
T ss_conf             688664-078789999889999999999


No 324
>pfam08542 Rep_fac_C Replication factor C. This family includes several subunits of DNA replication factor C.
Probab=95.63  E-value=0.2  Score=30.65  Aligned_cols=88  Identities=8%  Similarity=0.140  Sum_probs=68.4

Q ss_pred             CCCCHHHHHHHHHHHHCCCHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             35677777888876301363346788765-43047621357877753489999997457412234499889999999986
Q 537021.9.peg.4  229 ALADRNRIMDLFGYLIKGDIINVLQEFSS-QYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSK  307 (369)
Q Consensus       229 g~~~~~~i~~Ll~ai~~~d~~~al~~l~~-l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~  307 (369)
                      |.++.+.+.++++++.+++..++.+.+++ +.+.|+.+.+++..+...+...                            
T Consensus         1 g~p~p~~I~~il~~~~~~~f~~a~~~i~~~~~~~G~s~~Dii~~l~~~i~~~----------------------------   52 (90)
T pfam08542         1 GVPPPEDIKEILESCLNGDFEEAYKTLRELLIEKGYSAEDIITQLHRVLKTL----------------------------   52 (90)
T ss_pred             CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC----------------------------
T ss_conf             9889899999999998099999999999999985999999999999999873----------------------------


Q ss_pred             HCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             2998999999999999999830278889999999999
Q 537021.9.peg.4  308 EVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIR  344 (369)
Q Consensus       308 ~i~~~~L~~~lq~l~~a~~~Lk~n~np~L~lE~lLlk  344 (369)
                      .++...-..++..+.+++.+|-.+.+.++.+..++-+
T Consensus        53 ~~~~~~k~~il~~la~~e~rL~~G~~e~lQL~al~a~   89 (90)
T pfam08542        53 DIPESLKLELLKELGEIEYRLSDGASEYIQLSALLAA   89 (90)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf             8999999999999999999998279779899999860


No 325
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA).  This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life.  ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities.   To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates.  A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=95.63  E-value=0.06  Score=34.49  Aligned_cols=22  Identities=36%  Similarity=0.549  Sum_probs=19.3

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             2010787988889999999996
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      .+|+|--|+||||+|-.+|.+|
T Consensus         3 i~~~GKGGVGKTT~AaalA~~l   24 (254)
T cd00550           3 IFFGGKGGVGKTTISAATAVRL   24 (254)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
T ss_conf             9996898554899999999999


No 326
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the  chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.60  E-value=0.048  Score=35.22  Aligned_cols=26  Identities=23%  Similarity=0.300  Sum_probs=21.7

Q ss_pred             CCEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             67062010787988889999999996
Q 537021.9.peg.4   20 IAQSYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        20 ~~ha~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      -++-+++.|+||+|||+++.-+|..+
T Consensus        12 ~G~L~vi~a~~g~GKS~~~~~la~~~   37 (242)
T cd00984          12 PGDLIIIAARPSMGKTAFALNIAENI   37 (242)
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             98189999689999999999999999


No 327
>TIGR01618 phage_P_loop phage nucleotide-binding protein; InterPro: IPR006505   These sequences represent an uncharacterised family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of these proteins is unknown..
Probab=95.60  E-value=0.005  Score=42.49  Aligned_cols=81  Identities=21%  Similarity=0.467  Sum_probs=51.0

Q ss_pred             CCC-EEEHHCCCCCCCHHHHHHHHH-HHHCCCCCCCCCCCCCCCCCCHHHHHHHCCC-CCCC--CCCCCCCCCCHHHHHH
Q ss_conf             767-062010787988889999999-9961468777886658789997799997798-7782--2245332233455566
Q 537021.9.peg.4   19 RIA-QSYMLSGTRGIGKTTTARIIA-RSLNYKTAHIDVPTVEFEGFGEHCQAIIRGN-HVDV--VELDAASHTSIDDVRE   93 (369)
Q Consensus        19 ~~~-ha~lf~G~~G~GK~~~a~~~A-~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~-~~d~--~e~~~~s~~~id~ir~   93 (369)
                      |.+ ..||.+|.||.||||+++.|- +.|              -=.|+...++..|. -.|+  .++|...  .   +.+
T Consensus        10 ~~~~~~~lIYG~~G~GKTS~~K~l~GktL--------------~l~~D~SSkVL~G~~nvdiim~~~d~~~--~---~~~   70 (229)
T TIGR01618        10 RSEYFRYLIYGKPGLGKTSTIKYLPGKTL--------------VLSLDKSSKVLAGDENVDIIMADLDDEK--P---IQE   70 (229)
T ss_pred             CCCCCEEEEECCCCCCCCCEEEECCCCEE--------------EEECCCCCCCCCCCCCCEEEEEEECCCC--C---HHH
T ss_conf             67663688875898872305664588789--------------8836786443468998338998606998--4---789


Q ss_pred             HHHHHH-HHH-HCCCCCEEEEECHHHC
Q ss_conf             555445-654-2046523775115664
Q 537021.9.peg.4   94 IIDQIY-YKP-ISARFRVYIMDEVQML  118 (369)
Q Consensus        94 l~~~~~-~~p-~~~~~kv~iid~a~~m  118 (369)
                      +.++.. +.. ..-+|..++||..-.+
T Consensus        71 ~~e~~~~~~~~~~~~Y~niViDNis~l   97 (229)
T TIGR01618        71 MVEFYKELQNIQAEEYDNIVIDNISEL   97 (229)
T ss_pred             HHHHHHHHHCCHHHCCCEEEEECHHHH
T ss_conf             999999973225345765898142789


No 328
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.59  E-value=0.07  Score=33.99  Aligned_cols=122  Identities=14%  Similarity=0.155  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf             48999999999982876706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4    4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA   83 (369)
Q Consensus         4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~   83 (369)
                      |.+.+....+....+.-|--.-|+|..|.||+|+|.++++.|.-.-....  ..+  |  +   .+.+|=..|+=.   .
T Consensus         6 ~~~~v~~~~r~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y--~LD--G--D---nvR~gL~~dLgF---s   73 (197)
T COG0529           6 HPHSVTKQEREALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVY--LLD--G--D---NVRHGLNRDLGF---S   73 (197)
T ss_pred             CCCCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEE--EEC--C--H---HHHHCCCCCCCC---C
T ss_conf             63215888898872799859996468888787999999999997597589--855--7--4---676500578897---8


Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf             223345556655544565420465237751156648001678999997212211146
Q 537021.9.peg.4   84 SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFI  140 (369)
Q Consensus        84 s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fi  140 (369)
                      ..-.++.||.+.+-+.+..-.|   +++|-.+=..-.+.-+--.+.+++.+=.-+|+
T Consensus        74 ~edR~eniRRvaevAkll~daG---~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV  127 (197)
T COG0529          74 REDRIENIRRVAEVAKLLADAG---LIVIVAFISPYREDRQMARELLGEGEFIEVYV  127 (197)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCC---EEEEEEEECCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf             6789999999999999998789---08999751730999999999727686289995


No 329
>cd04155 Arl3 Arl3 subfamily.  Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension.  In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form.  The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector.  Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2).  It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery.  In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.59  E-value=0.11  Score=32.69  Aligned_cols=135  Identities=18%  Similarity=0.204  Sum_probs=68.2

Q ss_pred             HHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC--CCCCCCCCC
Q ss_conf             999999998287670620107879888899999999961468777886658789997799997798778--222453322
Q 537021.9.peg.4    8 IKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVD--VVELDAASH   85 (369)
Q Consensus         8 ~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d--~~e~~~~s~   85 (369)
                      +..|++.-.+.+-+. .++.|++|+||||+-+.+..    .......|+....        +..-.+.+  +.--|-+  
T Consensus         2 ~~~~~~~k~~~~~~K-i~ilG~~~sGKTsll~~l~~----~~~~~~~pT~g~~--------~~~v~~~~~~~~lwD~~--   66 (173)
T cd04155           2 LSLLRKLRKSSEEPR-ILILGLDNAGKTTILKQLAS----EDISHITPTQGFN--------IKTVQSDGFKLNVWDIG--   66 (173)
T ss_pred             HHHHHHHHCCCCCCE-EEEECCCCCCHHHHHHHHHC----CCCCCCCCCCCEE--------EEEEEECCEEEEEEECC--
T ss_conf             678877655687758-99997999988999999856----9986606811323--------79999899999998558--


Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC-CCHHHHHHHHHHHCC-CCCCEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf             3345556655544565420465237751156648-001678999997212-21114665067543303567543332102
Q 537021.9.peg.4   86 TSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS-TAAFNGLLKTLEEPP-PHVKFIFATTEIRKIPITVLSRCQRFDLH  163 (369)
Q Consensus        86 ~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~-~~a~NaLLK~lEEPp-~~~~fil~t~~~~~ll~TI~SRcq~~~f~  163 (369)
                       |-+..|.+.... |+..  .-=||++|-.+.-+ .++..-|-+.+.++. .++-|++++|-.+. +            .
T Consensus        67 -G~~~~~~~~~~y-~~~a--~~iI~VvD~td~~~~~~~~~~l~~~l~~~~~~~~PiLiv~NK~Dl-~------------~  129 (173)
T cd04155          67 -GQRAIRPYWRNY-FENT--DCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDL-A------------T  129 (173)
T ss_pred             -CCHHHHHHHHHH-CCCC--CEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC-C------------C
T ss_conf             -751012689976-5556--379999966756889999999999974130069838999976667-7------------7


Q ss_pred             CCCCHHHHHHH
Q ss_conf             45400135678
Q 537021.9.peg.4  164 RISIGDLIELF  174 (369)
Q Consensus       164 ~l~~~~i~~~L  174 (369)
                      ..+.++|.+.|
T Consensus       130 a~~~~eI~~~l  140 (173)
T cd04155         130 AAPAEEIAEAL  140 (173)
T ss_pred             CCCHHHHHHHH
T ss_conf             89999999985


No 330
>PRK10867 signal recognition particle protein; Provisional
Probab=95.58  E-value=0.15  Score=31.54  Aligned_cols=123  Identities=16%  Similarity=0.217  Sum_probs=60.2

Q ss_pred             CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH-----HHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             767062010787988889999999996146877788665878999779-----999779877822245332233455566
Q 537021.9.peg.4   19 RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHC-----QAIIRGNHVDVVELDAASHTSIDDVRE   93 (369)
Q Consensus        19 ~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c-----~~i~~~~~~d~~e~~~~s~~~id~ir~   93 (369)
                      +-|.-++|.|-.|+||||++--||..+--....  .+..-+|.+-...     +......-.+|+..+. +...++-+++
T Consensus        98 ~~p~VIm~vGLqGsGKTTT~aKLA~~lk~k~~k--~vllvaaDt~RpaA~eQL~~la~~~~v~~~~~~~-~~dp~~ia~~  174 (453)
T PRK10867         98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKK--KVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDV-GQKPVDIVNA  174 (453)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHHHHCCCCEECCCC-CCCHHHHHHH
T ss_conf             999699997468885185899999999973898--3798558877058999999999851980436788-9988999999


Q ss_pred             HHHHHHHHHHCCCCCEEEEECHHHCCCCHH--HHHHHHHHH--CCCCCCEEEEECCCCCC
Q ss_conf             555445654204652377511566480016--789999972--12211146650675433
Q 537021.9.peg.4   94 IIDQIYYKPISARFRVYIMDEVQMLSTAAF--NGLLKTLEE--PPPHVKFIFATTEIRKI  149 (369)
Q Consensus        94 l~~~~~~~p~~~~~kv~iid~a~~m~~~a~--NaLLK~lEE--Pp~~~~fil~t~~~~~l  149 (369)
                      -++.    .-..+|-|+|||-|-++..+..  +-| +-+.+  -|..++|++=+.--+.-
T Consensus       175 a~~~----ak~~~~DvvivDTAGRl~~d~~Lm~El-~~i~~~~~P~e~llV~Da~~GQ~a  229 (453)
T PRK10867        175 ALKE----AKLKFYDVLLVDTAGRLHVDEAMMDEI-KQVHASINPVETLFVVDAMTGQDA  229 (453)
T ss_pred             HHHH----HHHCCCCEEEEECCCCHHCCHHHHHHH-HHHHHHHCCCCEEEEEECCCCHHH
T ss_conf             9999----997799999997876012108889999-999876378713797432235668


No 331
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.58  E-value=0.009  Score=40.56  Aligned_cols=44  Identities=18%  Similarity=0.245  Sum_probs=36.1

Q ss_pred             CHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             84899999999998287670620107879888899999999961
Q 537021.9.peg.4    3 GQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLN   46 (369)
Q Consensus         3 Gq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~   46 (369)
                      =|+..+..-.+.-..|+-|.-+-|+|.+|+||||+|+.+.+.|.
T Consensus         6 ~~~~~v~~~~r~~~~~~kg~viWlTGLSGSGKTTlA~~L~~~L~   49 (198)
T PRK03846          6 WHQHPVTKAQREQLHGHKGVVLWFTGLSGSGKSTVAGALEEALH   49 (198)
T ss_pred             EECCCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             44788799999998689986999879999988999999999999


No 332
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=95.56  E-value=0.15  Score=31.65  Aligned_cols=121  Identities=18%  Similarity=0.263  Sum_probs=62.8

Q ss_pred             EHHCCCCCCCHHHHHHHHH-HHHCCCCCCCC-CCCCC---CCCCCHHHHHHHCCCCCCCCCCCCC-----CC---CCHHH
Q ss_conf             2010787988889999999-99614687778-86658---7899977999977987782224533-----22---33455
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIA-RSLNYKTAHID-VPTVE---FEGFGEHCQAIIRGNHVDVVELDAA-----SH---TSIDD   90 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A-~~l~c~~~~~~-~~~~~---~c~~c~~c~~i~~~~~~d~~e~~~~-----s~---~~id~   90 (369)
                      .+++|+ |=||||.|.-+| +++ ....... ..-.+   ..|.-.   .+..+.+.+++..+..     .+   -..+.
T Consensus        25 ~VYTGd-GKGKTTAAlGlalRA~-G~G~rV~ivQFlKg~~~~ge~~---~~~~~~~~~~~~~g~~~~~~~~~~~e~~~~a   99 (178)
T PRK07414         25 QVFTSS-QRNFFTSVMAQALRIA-GQGTPVLIVQFLKGGIQQGPDQ---PIQLGQNLDWVRCDLPRCLDTPHLDESENKA   99 (178)
T ss_pred             EEEECC-CCCHHHHHHHHHHHHH-CCCCEEEEEEEEECCCCCCHHH---HHHHCCCCEEEECCCCCCCCCCCCCHHHHHH
T ss_conf             999579-9980899999999995-3998799999755897301689---9972689689974777546688888999999


Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEECHHH-C--CCCHHHHHHHHHHHCCCCCCEEEEECCC-CCC
Q ss_conf             566555445654204652377511566-4--8001678999997212211146650675-433
Q 537021.9.peg.4   91 VREIIDQIYYKPISARFRVYIMDEVQM-L--STAAFNGLLKTLEEPPPHVKFIFATTEI-RKI  149 (369)
Q Consensus        91 ir~l~~~~~~~p~~~~~kv~iid~a~~-m--~~~a~NaLLK~lEEPp~~~~fil~t~~~-~~l  149 (369)
                      +|+..+.+...-.+|.|-++|+||.-. +  .-=.-..++++|+.-|+++=.||+..++ +.|
T Consensus       100 ~~~~~~~a~~~l~~g~~DlvVLDEi~~Al~~gll~~eeVi~~L~~rP~~~evVLTGR~ap~eL  162 (178)
T PRK07414        100 LQELWQYTQQVVDEGKYELVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESL  162 (178)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEECHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHH
T ss_conf             999999999998688988899703689987699259999999981899988999699999999


No 333
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=95.56  E-value=0.019  Score=38.25  Aligned_cols=189  Identities=22%  Similarity=0.224  Sum_probs=98.8

Q ss_pred             HHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC--HHHH
Q ss_conf             982876706201078798888999999999614687778866-5878999779999779877822245332233--4555
Q 537021.9.peg.4   15 FKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPT-VEFEGFGEHCQAIIRGNHVDVVELDAASHTS--IDDV   91 (369)
Q Consensus        15 ~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~-~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~--id~i   91 (369)
                      +...++|  .++.|.+|+||--+||+|-..-  +   ..+|- .--|+.=+. ..+.+. ..-+  ..++ .+|  ..-.
T Consensus       332 v~~~~~p--vll~GEtGtGKe~laraiH~~s--~---~~gpfvAvNCaAip~-~liesE-LFGy--~~Ga-fTga~~kG~  399 (606)
T COG3284         332 VAATDLP--VLLQGETGTGKEVLARAIHQNS--E---AAGPFVAVNCAAIPE-ALIESE-LFGY--VAGA-FTGARRKGY  399 (606)
T ss_pred             HHHCCCC--EEECCCCCHHHHHHHHHHHHCC--C---CCCCEEEEEECCCHH-HHHHHH-HHCC--CCCC-CCCCHHCCC
T ss_conf             7624787--6853876556899999998536--5---569837998503447-764677-7445--7656-433001066


Q ss_pred             HHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHH----CCCCC------CEEEEECCC-CCCCHHHHHHHH--
Q ss_conf             66555445654204652377511566480016789999972----12211------146650675-433035675433--
Q 537021.9.peg.4   92 REIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEE----PPPHV------KFIFATTEI-RKIPITVLSRCQ--  158 (369)
Q Consensus        92 r~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEE----Pp~~~------~fil~t~~~-~~ll~TI~SRcq--  158 (369)
                      +-       ++.++.-...++||...|.-+.|-+||++|+|    |=..+      ..|=+|+-+ ..+-..=+=|=+  
T Consensus       400 ~g-------~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLy  472 (606)
T COG3284         400 KG-------KLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLY  472 (606)
T ss_pred             CC-------CCEECCCCCCHHHHHHHCHHHHHHHHHHHHHHCCEECCCCCCEEEEEEEEECCCCCHHHHHHCCCCHHHHH
T ss_conf             55-------41015787608987611418999999999861825235885215779998346757999987597148788


Q ss_pred             ------HHHCCCCCCH-HHHHHHHHHHHHCC---CCCCHHHHH-HHHHCCCCCCCHHHHCCCCCCCHHHCC-CCHH
Q ss_conf             ------3210245400-13567876431013---456256644-565316764200110001110000001-2103
Q 537021.9.peg.4  159 ------RFDLHRISIG-DLIELFTKILQEES---IEFDPEAVA-MIARASDGSARDGLSLLDQAIARCNDK-IVTS  222 (369)
Q Consensus       159 ------~~~f~~l~~~-~i~~~L~~i~~~E~---i~~d~~~l~-~ia~~s~GslR~Al~lLeq~i~~~~~~-i~~e  222 (369)
                            .+.++|+..- +-...|.++..+|+   .+++++++. +++...-||+|.-.|+++.+.+.+++. +...
T Consensus       473 yrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~~g~~~~~  548 (606)
T COG3284         473 YRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALSDGGRIRVS  548 (606)
T ss_pred             HHHCCEEECCCCHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEECC
T ss_conf             8744715506861104665789999998726877568999999998578998289999999999870799735714


No 334
>KOG0477 consensus
Probab=95.55  E-value=0.036  Score=36.15  Aligned_cols=128  Identities=16%  Similarity=0.241  Sum_probs=67.1

Q ss_pred             CCCHHHHHHHHHHHHHCC---------CC---CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             928489999999999828---------76---706201078798888999999999614687778866587899977999
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSG---------RI---AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQA   68 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~---------~~---~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~   68 (369)
                      |-||..|+..+.-++-.|         |+   .| .|+.|.||+||+.+-+..+|.-.    ....    .-|+..+...
T Consensus       451 IyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDin-vLL~GDPGTaKSQFLKY~eK~s~----RAV~----tTGqGASavG  521 (854)
T KOG0477         451 IYGHEDVKRAVALALFGGVPKNPGGKHKVRGDIN-VLLLGDPGTAKSQFLKYAEKTSP----RAVF----TTGQGASAVG  521 (854)
T ss_pred             HHCHHHHHHHHHHHHHCCCCCCCCCCCEECCCEE-EEEECCCCCCHHHHHHHHHHCCC----CEEE----ECCCCCCCCC
T ss_conf             3145899999999985687568898744514402-89846998228999999986275----3168----5067754333


Q ss_pred             HHCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf             9779--87782224533223345556655544565420465237751156648001678999997212211146650675
Q 537021.9.peg.4   69 IIRG--NHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEI  146 (369)
Q Consensus        69 i~~~--~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~  146 (369)
                      +..-  .||=.              |+..=... .-.-++.-|++|||.|+||.+---+.---||--   .      -+.
T Consensus       522 LTa~v~KdPvt--------------rEWTLEaG-ALVLADkGvClIDEFDKMndqDRtSIHEAMEQQ---S------ISI  577 (854)
T KOG0477         522 LTAYVRKDPVT--------------REWTLEAG-ALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQ---S------ISI  577 (854)
T ss_pred             EEEEEEECCCC--------------CEEEECCC-EEEECCCCEEEEEHHHHHCCCCCCHHHHHHHHC---C------HHH
T ss_conf             26887517865--------------30365167-289726853774121120401101599998751---2------014


Q ss_pred             CC--CCHHHHHHHHHHH
Q ss_conf             43--3035675433321
Q 537021.9.peg.4  147 RK--IPITVLSRCQRFD  161 (369)
Q Consensus       147 ~~--ll~TI~SRcq~~~  161 (369)
                      +|  |-.|++-||..+.
T Consensus       578 SKAGIVtsLqArctvIA  594 (854)
T KOG0477         578 SKAGIVTSLQARCTVIA  594 (854)
T ss_pred             HHHHHHHHHHHHHHHHE
T ss_conf             46668998875544300


No 335
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=95.53  E-value=0.068  Score=34.11  Aligned_cols=22  Identities=23%  Similarity=0.320  Sum_probs=18.9

Q ss_pred             EEEHHCCCCCCCHHHHHHHHHH
Q ss_conf             0620107879888899999999
Q 537021.9.peg.4   22 QSYMLSGTRGIGKTTTARIIAR   43 (369)
Q Consensus        22 ha~lf~G~~G~GK~~~a~~~A~   43 (369)
                      -.+|+.||||+|||++|.-|+.
T Consensus        20 s~~LI~G~pGsGKT~la~qfl~   41 (231)
T pfam06745        20 RVVLITGGPGTGKTIFGLQFLY   41 (231)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
T ss_conf             6999985897259999999999


No 336
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.53  E-value=0.035  Score=36.27  Aligned_cols=23  Identities=43%  Similarity=0.580  Sum_probs=19.6

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             62010787988889999999996
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      -+.+.||-|+||||+.++++..+
T Consensus        29 i~~l~G~NGaGKSTLlkli~Gl~   51 (200)
T PRK13540         29 LLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             99998899987999999997785


No 337
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.52  E-value=0.069  Score=34.06  Aligned_cols=23  Identities=35%  Similarity=0.521  Sum_probs=18.4

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             62010787988889999999996
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      -+-+.||.|+||||+.+.+...+
T Consensus        30 ~i~IvG~sGsGKSTLl~ll~gl~   52 (234)
T cd03251          30 TVALVGPSGSGKSTLVNLIPRFY   52 (234)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCC
T ss_conf             99999899982999999996676


No 338
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=95.51  E-value=0.015  Score=38.88  Aligned_cols=129  Identities=20%  Similarity=0.197  Sum_probs=61.4

Q ss_pred             CHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CC---CCCCHHHHHHHCCCCCCCC
Q ss_conf             8489999999999828767062010787988889999999996146877788665-87---8999779999779877822
Q 537021.9.peg.4    3 GQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV-EF---EGFGEHCQAIIRGNHVDVV   78 (369)
Q Consensus         3 Gq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~-~~---c~~c~~c~~i~~~~~~d~~   78 (369)
                      .|....+    ++.++.+   -+..||+|+|||-+|.+.|..+.-. +..+.... .|   .|.-   ..+.-|+..+-.
T Consensus         8 ~Q~~~~~----~l~~~~i---v~~~GpAGtGKT~la~~~al~~l~~-~~~~kiii~Rp~v~~g~~---iGfLPG~~~eK~   76 (205)
T pfam02562         8 GQKRYVE----AIRKNDI---VFGIGPAGTGKTYLAVAAAVDALKD-GKVKRIILTRPAVEAGEK---LGFLPGDLEEKV   76 (205)
T ss_pred             HHHHHHH----HHHCCCE---EEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCC---CCCCCCCHHHHH
T ss_conf             8999999----9717980---7998999860999999999999971-894379997577125775---455889789999


Q ss_pred             CC------CCCC-CCCHHHHHHHH-----HHHHHHHHCCC---CCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             24------5332-23345556655-----54456542046---5237751156648001678999997212211146650
Q 537021.9.peg.4   79 EL------DAAS-HTSIDDVREII-----DQIYYKPISAR---FRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFAT  143 (369)
Q Consensus        79 e~------~~~s-~~~id~ir~l~-----~~~~~~p~~~~---~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t  143 (369)
                      ++      |.-+ -.+-+.++.+.     +.....-.+|+   ..++|+|||..||.+..-.+|   -.=..++.+|++.
T Consensus        77 ~p~~~p~~d~l~~~~~~~~~~~l~~~~~Ie~~pl~~iRGrTf~n~~iIvDEaQN~t~~~lk~il---TRiG~~SK~vi~G  153 (205)
T pfam02562        77 DPYLRPLYDALYDMLGAEKVEKLIERGVIEIAPLAYMRGRTLNDAFIILDEAQNTTPEQMKMFL---TRIGFNSKMVVTG  153 (205)
T ss_pred             HHHHHHHHHHHHHHHCHHHHHHHHHCCCEEECCHHHHCCCCCCCCEEEEECHHCCCHHHHHHHH---HHCCCCCEEEEEC
T ss_conf             9999999999998728999999997597566146765547625688999722139999999998---4217996899947


Q ss_pred             CC
Q ss_conf             67
Q 537021.9.peg.4  144 TE  145 (369)
Q Consensus       144 ~~  145 (369)
                      .-
T Consensus       154 D~  155 (205)
T pfam02562       154 DI  155 (205)
T ss_pred             CH
T ss_conf             86


No 339
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.50  E-value=0.051  Score=34.99  Aligned_cols=22  Identities=36%  Similarity=0.733  Sum_probs=18.6

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             20107879888899999999961
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLN   46 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~   46 (369)
                      .+.+|+||+||||++..++ .++
T Consensus         3 I~ITGTPGvGKTT~~~~L~-~lg   24 (180)
T COG1936           3 IAITGTPGVGKTTVCKLLR-ELG   24 (180)
T ss_pred             EEEECCCCCCHHHHHHHHH-HHC
T ss_conf             7993799986687999999-829


No 340
>PRK10416 cell division protein FtsY; Provisional
Probab=95.49  E-value=0.11  Score=32.63  Aligned_cols=124  Identities=20%  Similarity=0.268  Sum_probs=63.1

Q ss_pred             CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH-----HHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             28767062010787988889999999996146877788665878999779-----9997798778222453322334555
Q 537021.9.peg.4   17 SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHC-----QAIIRGNHVDVVELDAASHTSIDDV   91 (369)
Q Consensus        17 ~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c-----~~i~~~~~~d~~e~~~~s~~~id~i   91 (369)
                      .++-|+.+||.|-.|+||||++--||+.+.-..   .....-+|.+-+..     +........+++.-    +.+.|-.
T Consensus       291 ~~~~P~VIl~vGvNG~GKTTTigKLA~~~~~~g---kkVllaA~DTfRaAAieQL~~w~~r~~v~vi~~----~~g~Dpa  363 (499)
T PRK10416        291 EGKTPFVILMVGVNGVGKTTTIGKLARQFEQQG---KSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQ----HTGADSA  363 (499)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC---CCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEC----CCCCCHH
T ss_conf             899987999974787878989999999999779---953788406675689999999842457369836----8999979


Q ss_pred             HHHHHHHHHHHHCCCCCEEEEECHHHCCCCHH--HHH---HHHH----HHCCCCCCEEEEECCCCC
Q ss_conf             66555445654204652377511566480016--789---9999----721221114665067543
Q 537021.9.peg.4   92 REIIDQIYYKPISARFRVYIMDEVQMLSTAAF--NGL---LKTL----EEPPPHVKFIFATTEIRK  148 (369)
Q Consensus        92 r~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~--NaL---LK~l----EEPp~~~~fil~t~~~~~  148 (369)
                      - +.-+.-......+|-|+|||-|-+|....-  +-|   -+++    +..|..++|++=++--+.
T Consensus       364 ~-V~~dai~~a~~~~~DvviiDTAGRl~~~~~LM~EL~ki~rvi~k~~~~aP~e~lLVlDa~tGQn  428 (499)
T PRK10416        364 S-VIFDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN  428 (499)
T ss_pred             H-HHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHH
T ss_conf             9-9999999999729998998577643260999999999999997237899974899977876778


No 341
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=95.49  E-value=0.068  Score=34.09  Aligned_cols=42  Identities=19%  Similarity=0.200  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             899999999998287670620107879888899999999961
Q 537021.9.peg.4    5 KPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLN   46 (369)
Q Consensus         5 ~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~   46 (369)
                      +...+.|........=+|-.=++||||+||+|+.-.|.+.+.
T Consensus        13 ~~~~~ll~~~~~~~g~a~~iGiTG~PGaGKStli~~l~~~~~   54 (267)
T pfam03308        13 PEARELLRRLMPLTGRAHRVGITGVPGAGKSTLIEALGMELR   54 (267)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             779999999874359955998768998879999999999999


No 342
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128   Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=95.47  E-value=0.031  Score=36.61  Aligned_cols=120  Identities=20%  Similarity=0.324  Sum_probs=63.0

Q ss_pred             EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHC---CCCCCC----CCC-CC--CCCC-----
Q ss_conf             06201078798888999999999614687778866587899977999977---987782----224-53--3223-----
Q 537021.9.peg.4   22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIR---GNHVDV----VEL-DA--ASHT-----   86 (369)
Q Consensus        22 ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~---~~~~d~----~e~-~~--~s~~-----   86 (369)
                      -++=+-||-|+||+|+||.+-=...|.++..-.   |  |  -.-++.+.   |.|.-+    +|+ +|  +-||     
T Consensus       357 e~laIIGPSgSGKStLaR~~vG~W~~~~G~VRL---D--G--adl~qWD~e~lG~~iGYLPQdvELF~GTva~NIARF~e  429 (556)
T TIGR01842       357 EALAIIGPSGSGKSTLARILVGIWPPASGSVRL---D--G--ADLKQWDRETLGKHIGYLPQDVELFSGTVAENIARFGE  429 (556)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEE---E--H--HHHHCCCHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCC
T ss_conf             458887478652588987887210135653364---0--3--34402375365880154798505076767640244688


Q ss_pred             -----------CHHHHHHHHHHHHH------------------------HHHCCCCCEEEEECHH-HCCCCHHHHHHHHH
Q ss_conf             -----------34555665554456------------------------5420465237751156-64800167899999
Q 537021.9.peg.4   87 -----------SIDDVREIIDQIYY------------------------KPISARFRVYIMDEVQ-MLSTAAFNGLLKTL  130 (369)
Q Consensus        87 -----------~id~ir~l~~~~~~------------------------~p~~~~~kv~iid~a~-~m~~~a~NaLLK~l  130 (369)
                                 +.-++.|++-.+-.                        +...|+.+++|+||-+ .|=.+.--||.+-|
T Consensus       430 n~d~~~iieAAklAGvHElIl~lP~GYDT~iG~~G~~LSGGQRQRIaLARAlyG~P~lvvLDEPNsNLD~~GE~AL~~Ai  509 (556)
T TIGR01842       430 NADPEKIIEAAKLAGVHELILRLPDGYDTDIGEGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAI  509 (556)
T ss_pred             CCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf             78878999999760303575169688544313777778614689999999871798378732889876617899999999


Q ss_pred             HH-CCCCCCEEEEECCCCC
Q ss_conf             72-1221114665067543
Q 537021.9.peg.4  131 EE-PPPHVKFIFATTEIRK  148 (369)
Q Consensus       131 EE-Pp~~~~fil~t~~~~~  148 (369)
                      -+ --.++.-|++|+-|.-
T Consensus       510 ~~lK~rg~tvv~itHRp~l  528 (556)
T TIGR01842       510 KALKARGITVVVITHRPSL  528 (556)
T ss_pred             HHHHHCCCEEEEEECHHHH
T ss_conf             9998679728998410689


No 343
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein.  In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor.  This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export.  The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD).  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.47  E-value=0.021  Score=37.84  Aligned_cols=27  Identities=26%  Similarity=0.444  Sum_probs=20.3

Q ss_pred             EEEHHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             062010787988889999999996146
Q 537021.9.peg.4   22 QSYMLSGTRGIGKTTTARIIARSLNYK   48 (369)
Q Consensus        22 ha~lf~G~~G~GK~~~a~~~A~~l~c~   48 (369)
                      .-+-+.||.|+||+|+.+.++..+...
T Consensus        30 e~vaivG~sGsGKSTLl~ll~gl~~p~   56 (229)
T cd03254          30 ETVAIVGPTGAGKTTLINLLMRFYDPQ   56 (229)
T ss_pred             CEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf             999999999980999999996686678


No 344
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.47  E-value=0.12  Score=32.34  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=19.7

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHH
Q ss_conf             706201078798888999999999
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARS   44 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~   44 (369)
                      +.-++++||.|+||+|+++.+.+.
T Consensus         7 g~livisGPSG~GK~tl~~~L~~~   30 (208)
T PRK00300          7 GLLIVLSAPSGAGKSTLVRALLER   30 (208)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf             838999999988999999999972


No 345
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=95.39  E-value=0.03  Score=36.74  Aligned_cols=37  Identities=27%  Similarity=0.396  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             9999999998287670620107879888899999999961
Q 537021.9.peg.4    7 MIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLN   46 (369)
Q Consensus         7 ~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~   46 (369)
                      +...|+.+++.+.   ..|++||.|+||||+.+++...++
T Consensus       128 ~~~~L~~~v~~~~---~ilIsG~TGSGKTT~l~all~~i~  164 (283)
T pfam00437       128 IAEFLRQAVQARG---NILVSGGTGSGKTTLLYALLNEIN  164 (283)
T ss_pred             HHHHHHHHHHCCC---EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             9999999998197---599988999988999999998408


No 346
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.38  E-value=0.08  Score=33.59  Aligned_cols=121  Identities=19%  Similarity=0.230  Sum_probs=64.2

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHH-HHH-CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC------------C
Q ss_conf             7062010787988889999999-996-1468777886658789997799997798778222453322------------3
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIA-RSL-NYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASH------------T   86 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A-~~l-~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~------------~   86 (369)
                      +--..|.||.|+||||+-=-|| ++. ..........+                  .|-+.|.|...            .
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT------------------tDtYRIGA~EQLk~Ya~im~vp~~  264 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT------------------TDTYRIGAVEQLKTYADIMGVPLE  264 (407)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE------------------ECCCHHHHHHHHHHHHHHHCCCEE
T ss_conf             85799989988758879999999997532576068997------------------144115289999999998699559


Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHH-----CCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             3455566555445654204652377511566480016789999972-----12211146650675433035675433321
Q 537021.9.peg.4   87 SIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEE-----PPPHVKFIFATTEIRKIPITVLSRCQRFD  161 (369)
Q Consensus        87 ~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEE-----Pp~~~~fil~t~~~~~ll~TI~SRcq~~~  161 (369)
                      =++.-+++.+.+..   -..+.++++|-|-+=..+.+  .+.-|+|     ++-.+++.|.+|.-.+.+..|..+-..++
T Consensus       265 vv~~~~el~~ai~~---l~~~d~ILVDTaGrs~~D~~--~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~  339 (407)
T COG1419         265 VVYSPKELAEAIEA---LRDCDVILVDTAGRSQYDKE--KIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFP  339 (407)
T ss_pred             EECCHHHHHHHHHH---HHCCCEEEEECCCCCCCCHH--HHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCC
T ss_conf             96399999999998---53188899968998833789--99999999703566217999845764688999999724588


Q ss_pred             CCC
Q ss_conf             024
Q 537021.9.peg.4  162 LHR  164 (369)
Q Consensus       162 f~~  164 (369)
                      +..
T Consensus       340 i~~  342 (407)
T COG1419         340 IDG  342 (407)
T ss_pred             CCE
T ss_conf             661


No 347
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide-binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.37  E-value=0.045  Score=35.43  Aligned_cols=114  Identities=23%  Similarity=0.221  Sum_probs=55.3

Q ss_pred             EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH---HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             0620107879888899999999961468777886658789997---7999977987782224533223345556655544
Q 537021.9.peg.4   22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGE---HCQAIIRGNHVDVVELDAASHTSIDDVREIIDQI   98 (369)
Q Consensus        22 ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~---~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~   98 (369)
                      .-+.+.||.|+||||+.++++-.+....+..     ...|.-.   .-+..... .--+..+++--+-.+.=.|      
T Consensus        26 e~~~i~G~nGaGKSTLl~~l~gl~~~~~G~i-----~~~g~~~~~~~~~~~~~~-i~~v~QLSgGqkqrv~iA~------   93 (157)
T cd00267          26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEI-----LIDGKDIAKLPLEELRRR-IGYVPQLSGGQRQRVALAR------   93 (157)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-----EECCEECCCCCHHHHHHC-CCCCCCCCHHHHHHHHHHH------
T ss_conf             7999987889998999999958847996289-----999999997999999940-6087668869999999999------


Q ss_pred             HHHHHCCCCCEEEEECHH-HCCCCHHHHHHHHHHHCC-CCCCEEEEECCCCCCC
Q ss_conf             565420465237751156-648001678999997212-2111466506754330
Q 537021.9.peg.4   99 YYKPISARFRVYIMDEVQ-MLSTAAFNGLLKTLEEPP-PHVKFIFATTEIRKIP  150 (369)
Q Consensus        99 ~~~p~~~~~kv~iid~a~-~m~~~a~NaLLK~lEEPp-~~~~fil~t~~~~~ll  150 (369)
                         ..-.+.+++|+||.- .|-..+...+.+.+.+-. .+..+|++|++++-+.
T Consensus        94 ---al~~~p~ililDEPtsgLD~~~~~~l~~~i~~l~~~g~tii~vtH~~~~~~  144 (157)
T cd00267          94 ---ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE  144 (157)
T ss_pred             ---HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf             ---997099999996987668999999999999999968999999908999999


No 348
>pfam01745 IPT Isopentenyl transferase. Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid.
Probab=95.36  E-value=0.032  Score=36.54  Aligned_cols=104  Identities=15%  Similarity=0.220  Sum_probs=57.2

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             6201078798888999999999614687778866587899977999977987-782224533223345556655544565
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNH-VDVVELDAASHTSIDDVREIIDQIYYK  101 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~-~d~~e~~~~s~~~id~ir~l~~~~~~~  101 (369)
                      .|+++||.|+|||.+|..+|+...++--..        ..-..|+.+.-|+- |..-|                      
T Consensus         3 l~~I~GpT~~GKT~~ai~lA~~~g~~iis~--------D~~Q~y~el~igs~rp~~~E----------------------   52 (232)
T pfam01745         3 LYLIWGATCTGKTAEAIALAKETGWPVIVL--------DRVQCCSQLATGSGRPLPAE----------------------   52 (232)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCEEEE--------CHHHHHHCCCCCCCCCCHHH----------------------
T ss_conf             689978877771699999999959977962--------03443001136778999799----------------------


Q ss_pred             HHCCCCCEEEEECH--H-HCCCCHHHHHHHH-HHHCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf             42046523775115--6-6480016789999-9721221114665067543303567543
Q 537021.9.peg.4  102 PISARFRVYIMDEV--Q-MLSTAAFNGLLKT-LEEPPPHVKFIFATTEIRKIPITVLSRC  157 (369)
Q Consensus       102 p~~~~~kv~iid~a--~-~m~~~a~NaLLK~-lEEPp~~~~fil~t~~~~~ll~TI~SRc  157 (369)
                       .+|-.|||+-+-.  + -++...+|.+|+. +.-.++.--+||=.-+.+-+.--++|+-
T Consensus        53 -l~gT~RiYL~~R~l~~Gii~a~eA~~~Li~~V~~~~~~~glILEGGSISLl~~ma~~~~  111 (232)
T pfam01745        53 -LQGTRRIYLDNRPLSEGIIDAEEAHDRLIAEVTSHKDEGGVILEGGSISLLKRMAQSPY  111 (232)
T ss_pred             -HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCHH
T ss_conf             -65752698616734346648899999999999604667866872750999999975734


No 349
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.36  E-value=0.17  Score=31.17  Aligned_cols=126  Identities=19%  Similarity=0.144  Sum_probs=63.5

Q ss_pred             CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH-----HHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             67062010787988889999999996146877788665878999779-----9997798778222453322334555665
Q 537021.9.peg.4   20 IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHC-----QAIIRGNHVDVVELDAASHTSIDDVREI   94 (369)
Q Consensus        20 ~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c-----~~i~~~~~~d~~e~~~~s~~~id~ir~l   94 (369)
                      -|.-++|.|..|+||||++--||..+--.   ...+..-+|.+-...     +........+++.. ..+...++-+++-
T Consensus        96 kP~Vim~vGlqGsGKTTT~aKLA~~~kk~---g~kv~lvaaDt~RpaA~eQL~~la~~~~v~~~~~-~~~~dp~~i~~~a  171 (433)
T PRK00771         96 KPQTILLVGLQGSGKTTTAAKLARYFQKK---GLKVGVICADTWRPGAYEQLKQLCEKINVPFYGD-PKEKDAVKIVKEG  171 (433)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHH
T ss_conf             98589997378897899999999999977---9946785067883689999999998638873178-8999999999999


Q ss_pred             HHHHHHHHHCCCCCEEEEECHHHCCCCHH--HHHHHHHHH-CCCCCCEEEEECCCCCCCHHHHH
Q ss_conf             55445654204652377511566480016--789999972-12211146650675433035675
Q 537021.9.peg.4   95 IDQIYYKPISARFRVYIMDEVQMLSTAAF--NGLLKTLEE-PPPHVKFIFATTEIRKIPITVLS  155 (369)
Q Consensus        95 ~~~~~~~p~~~~~kv~iid~a~~m~~~a~--NaLLK~lEE-Pp~~~~fil~t~~~~~ll~TI~S  155 (369)
                      ++.+      .+|-|+|||-|-++..+..  +-|-+.-+- -|..++|++=+.--+.-....++
T Consensus       172 ~~~~------k~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~GQ~a~~~a~~  229 (433)
T PRK00771        172 LEKL------KKVDVIIVDTAGRHKLEKDLIEEMKQIKEITKPDEVILVIDATIGQQASEQAKA  229 (433)
T ss_pred             HHHH------CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH
T ss_conf             9984------569889997765210409999999999877579768998654422678999999


No 350
>pfam01057 Parvo_NS1 Parvovirus non-structural protein NS1. This family also contains the NS2 protein. Parvoviruses encode two non-structural proteins, NS1 and NS2. The mRNA for NS2 contains the coding sequence for the first 87 amino acids of NS1, then by an alternative splicing mechanism mRNA from a different reading frame, encoding the last 78 amino acids, makes up the full length of the NS2 mRNA. NS1, is the major non-structural protein. It is essential for DNA replication. It is an 83-kDa nuclear phosphoprotein. It has DNA helicase and ATPase activity.
Probab=95.32  E-value=0.087  Score=33.29  Aligned_cols=24  Identities=29%  Similarity=0.426  Sum_probs=21.7

Q ss_pred             EEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             062010787988889999999996
Q 537021.9.peg.4   22 QSYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        22 ha~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      ....|+||+.+||+-+|.++|+++
T Consensus       114 N~i~~~Gp~~TGks~la~ai~~~~  137 (271)
T pfam01057       114 NTVWFYGPASTGKTNLAQAIAHAV  137 (271)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             569998898767899999999868


No 351
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=95.32  E-value=0.063  Score=34.33  Aligned_cols=131  Identities=17%  Similarity=0.206  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHC-----CCCC-CC
Q ss_conf             48999999999982876706201078798888999999999614687778866587899977999977-----9877-82
Q 537021.9.peg.4    4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIR-----GNHV-DV   77 (369)
Q Consensus         4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~-----~~~~-d~   77 (369)
                      |+.+++.+.+..++++   --++.-|+|.|||.+|...++.+.-.       +.-.|-.-..+.+..+     ...+ ++
T Consensus        41 Q~~al~a~~~~~~~~~---~gvivlpTGaGKT~va~~~~~~~~~~-------~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~  110 (442)
T COG1061          41 QEEALDALVKNRRTER---RGVIVLPTGAGKTVVAAEAIAELKRS-------TLVLVPTKELLDQWAEALKKFLLLNDEI  110 (442)
T ss_pred             HHHHHHHHHHHCCCCC---CEEEEECCCCCHHHHHHHHHHHHCCC-------EEEEECCHHHHHHHHHHHHHHCCCCCCC
T ss_conf             9999999996222578---67999679998899999999982698-------8999782999999999999734886766


Q ss_pred             CCCCCC------CCCCHHHHHHHHHHHHHHHHCC-CCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf             224533------2233455566555445654204-65237751156648001678999997212211146650675
Q 537021.9.peg.4   78 VELDAA------SHTSIDDVREIIDQIYYKPISA-RFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEI  146 (369)
Q Consensus        78 ~e~~~~------s~~~id~ir~l~~~~~~~p~~~-~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~  146 (369)
                      -++.+.      ..+-|..+.-+...-.+....+ +|-.+|+||||.+....+..++..+..|-+  ++=|++|-+
T Consensus       111 g~~~~~~~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~~--~LGLTATp~  184 (442)
T COG1061         111 GIYGGGEKELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAYP--RLGLTATPE  184 (442)
T ss_pred             CEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCE--EEEEECCCC
T ss_conf             03368723357774899983897641555540356667599975245784779999997510310--467714872


No 352
>pfam01580 FtsK_SpoIIIE FtsK/SpoIIIE family. FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif.  It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Probab=95.29  E-value=0.093  Score=33.09  Aligned_cols=27  Identities=26%  Similarity=0.507  Sum_probs=22.1

Q ss_pred             CCCEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             7670620107879888899999999961
Q 537021.9.peg.4   19 RIAQSYMLSGTRGIGKTTTARIIARSLN   46 (369)
Q Consensus        19 ~~~ha~lf~G~~G~GK~~~a~~~A~~l~   46 (369)
                      ..|| +|+.|.+|.|||++.+.+..++.
T Consensus        37 ~~pH-~Lv~G~tGsGKS~~l~~li~sl~   63 (202)
T pfam01580        37 KMPH-LLIAGATGSGKSTFLNTLILSLA   63 (202)
T ss_pred             CCCC-EEEECCCCCCCCHHHHHHHHHHH
T ss_conf             6886-89965899980099999999998


No 353
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.25  E-value=0.065  Score=34.24  Aligned_cols=21  Identities=29%  Similarity=0.534  Sum_probs=18.4

Q ss_pred             HCCCCCCCHHHHHHHHHHHHC
Q ss_conf             107879888899999999961
Q 537021.9.peg.4   26 LSGTRGIGKTTTARIIARSLN   46 (369)
Q Consensus        26 f~G~~G~GK~~~a~~~A~~l~   46 (369)
                      ++||||.||+|+--.+.+.+.
T Consensus         4 itG~pGaGKStLi~~l~~~~~   24 (148)
T cd03114           4 ITGVPGAGKSTLIDALITALR   24 (148)
T ss_pred             ECCCCCCCHHHHHHHHHHHHH
T ss_conf             258997878999999999999


No 354
>pfam05272 VirE Virulence-associated protein E. This family contains several bacterial virulence-associated protein E like proteins.
Probab=95.21  E-value=0.056  Score=34.69  Aligned_cols=115  Identities=17%  Similarity=0.265  Sum_probs=61.1

Q ss_pred             HHHHCC-CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             999828-7670620107879888899999999961468777886658789997799997798778222453322334555
Q 537021.9.peg.4   13 NAFKSG-RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDV   91 (369)
Q Consensus        13 ~~~~~~-~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~i   91 (369)
                      ++..-| +..+..+|.|+-|+||+|+.+.|+....+.....      + ..-+.-..+...-...+=|+++.++..++.+
T Consensus        43 R~~~pG~k~d~vlvL~G~QG~gKStf~~~L~~~~~~d~~~~------~-~~kD~~~~l~~~wi~el~El~~~~k~~~~~l  115 (198)
T pfam05272        43 RVYEPGCKFDHVLILQGAQGSGKSTFLKKLGGEWFTDSIRS------F-EGKDAYEKLQGVWIVEIAELDGFSKAEVEAI  115 (198)
T ss_pred             HHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCC------C-CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             99778976776789988986789999999737751565557------6-7738999999878732598751365329999


Q ss_pred             HHHHHHH--HHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf             6655544--5654204652377511566480016789999972122111466506754330356754
Q 537021.9.peg.4   92 REIIDQI--YYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSR  156 (369)
Q Consensus        92 r~l~~~~--~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SR  156 (369)
                      +.++..-  .+++.-|                      +..+..|.+++||-+||+.+-|-..==+|
T Consensus       116 K~fls~~~d~~R~pY~----------------------~~~~~~pR~~vfigTtN~~~~L~D~TGnR  160 (198)
T pfam05272       116 KAFITRTVDSFRAPYG----------------------RRAESFPRQCVFVGTTNRDEFLKDPTGNR  160 (198)
T ss_pred             HHHHCCHHHCCHHCCC----------------------CCCEECCEEEEEEEECCCCCCCCCCCCCE
T ss_conf             9984541312310223----------------------56400654799999638876557999981


No 355
>PRK06921 hypothetical protein; Provisional
Probab=95.20  E-value=0.036  Score=36.16  Aligned_cols=40  Identities=28%  Similarity=0.259  Sum_probs=27.6

Q ss_pred             HHHHHHHHHH-CCCCCEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             9999999998-287670620107879888899999999961
Q 537021.9.peg.4    7 MIKTLTNAFK-SGRIAQSYMLSGTRGIGKTTTARIIARSLN   46 (369)
Q Consensus         7 ~~~~l~~~~~-~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~   46 (369)
                      +++...++.. .+.=.+.++|.|++|+|||-+|-+.|+.|+
T Consensus       101 a~eY~~~F~~i~~~~~~~l~f~G~~G~GKThLa~aIa~~Ll  141 (265)
T PRK06921        101 AVEYVKDFEKIQGCRKNSIALLGQPGSGKTHLLTAAANELM  141 (265)
T ss_pred             HHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             99999977876077766279972898988999999999999


No 356
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=95.19  E-value=0.14  Score=31.85  Aligned_cols=199  Identities=20%  Similarity=0.263  Sum_probs=102.9

Q ss_pred             CCCHHHHHH-HHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHHCCCCCCCC
Q ss_conf             928489999-999999828767062010787988889999999996146877788665-878999779999779877822
Q 537021.9.peg.4    1 MIGQKPMIK-TLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV-EFEGFGEHCQAIIRGNHVDVV   78 (369)
Q Consensus         1 iiGq~~~~~-~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~-~~c~~c~~c~~i~~~~~~d~~   78 (369)
                      |||...... .++.+-+--+-+-..|+.|..|+||-.+|+..-   |+.. ..++|-+ --|+--+. ..+.+.=| - +
T Consensus       247 Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH---~~S~-R~~~PFIaiNCaAiPe-~LlESELF-G-y  319 (560)
T COG3829         247 IIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIH---NLSP-RANGPFIAINCAAIPE-TLLESELF-G-Y  319 (560)
T ss_pred             HCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---HCCC-CCCCCEEEEECCCCCH-HHHHHHHH-C-C
T ss_conf             2058999999999998633899828995378866899999987---4484-3479807876433888-88888872-7-6


Q ss_pred             C---CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC-----------CCCCCEEEEEC
Q ss_conf             2---453322334555665554456542046523775115664800167899999721-----------22111466506
Q 537021.9.peg.4   79 E---LDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP-----------PPHVKFIFATT  144 (369)
Q Consensus        79 e---~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP-----------p~~~~fil~t~  144 (369)
                      |   ..||++.|.-   -+.+       .+..=-+++||.-.|+..=|-.||+.|+|-           |-.+..|=+|+
T Consensus       320 e~GAFTGA~~~GK~---GlfE-------~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN  389 (560)
T COG3829         320 EKGAFTGASKGGKP---GLFE-------LANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATN  389 (560)
T ss_pred             CCCCCCCCCCCCCC---CCEE-------ECCCCEEEEHHHCCCCHHHHHHHHHHHHHCEEEECCCCCCEEEEEEEEECCC
T ss_conf             77642464457997---6054-------4169837712320399899999999875353785378875356789994257


Q ss_pred             C-CCCCCHHHHHHH------HHH--HCCCCC--CHHHHH----HHHHHHHHCC--CC-CCHHHHHHH-HHCCCCCCCHHH
Q ss_conf             7-543303567543------332--102454--001356----7876431013--45-625664456-531676420011
Q 537021.9.peg.4  145 E-IRKIPITVLSRC------QRF--DLHRIS--IGDLIE----LFTKILQEES--IE-FDPEAVAMI-ARASDGSARDGL  205 (369)
Q Consensus       145 ~-~~~ll~TI~SRc------q~~--~f~~l~--~~~i~~----~L~~i~~~E~--i~-~d~~~l~~i-a~~s~GslR~Al  205 (369)
                      . +.+.+..=+=|-      .++  .++|+-  +++|..    +|.+.....+  ++ +.++++..+ ...+-||+|.--
T Consensus       390 ~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELe  469 (560)
T COG3829         390 RNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELE  469 (560)
T ss_pred             CCHHHHHHCCCCHHHHEEEECEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHH
T ss_conf             58999986396165530030401114777233820189999999999998728876668999999998689996099999


Q ss_pred             HCCCCCCCHHH
Q ss_conf             00011100000
Q 537021.9.peg.4  206 SLLDQAIARCN  216 (369)
Q Consensus       206 ~lLeq~i~~~~  216 (369)
                      |++|+++.+.+
T Consensus       470 NviER~v~~~~  480 (560)
T COG3829         470 NVIERAVNLVE  480 (560)
T ss_pred             HHHHHHHHCCC
T ss_conf             99999981068


No 357
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=95.18  E-value=0.1  Score=32.81  Aligned_cols=138  Identities=15%  Similarity=0.202  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH----HHHHHHC------CC
Q ss_conf             4899999999998287670620107879888899999999961468777886658789997----7999977------98
Q 537021.9.peg.4    4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGE----HCQAIIR------GN   73 (369)
Q Consensus         4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~----~c~~i~~------~~   73 (369)
                      |..+++.+..++..|+ .. .|+.=..|+|||.+|..+...|.-....-  .+.=.|..-.    ....+..      .+
T Consensus       421 Q~~AI~~v~~a~~~~~-rr-aLl~MATGTGKTrtaial~~rLlk~~~~k--RILFLvDR~~L~~QA~~~F~~~~~~~~~~  496 (1126)
T PRK11448        421 QEDAIQAVEKALANGQ-RE-ILLAMATGTGKTRTAIALMYRLLKAKRFK--RILFLVDRRALGEQALDAFKDTKIEGNQT  496 (1126)
T ss_pred             HHHHHHHHHHHHHCCC-CC-EEEEECCCCCHHHHHHHHHHHHHHCCCCC--EEEEECCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             9999999999998098-54-68872488858989999999999658767--25798565899999999875434545666


Q ss_pred             CCCCCCC--------CCCCCCCHHHHHHHHHHHHH-----HHHCCCCCEEEEECHHH-------CCC---------CHHH
Q ss_conf             7782224--------53322334555665554456-----54204652377511566-------480---------0167
Q 537021.9.peg.4   74 HVDVVEL--------DAASHTSIDDVREIIDQIYY-----KPISARFRVYIMDEVQM-------LST---------AAFN  124 (369)
Q Consensus        74 ~~d~~e~--------~~~s~~~id~ir~l~~~~~~-----~p~~~~~kv~iid~a~~-------m~~---------~a~N  124 (369)
                      ++++..+        +..+++-|-.+..++..+.+     .+.-|-|-.|||||||+       |+.         +=.+
T Consensus       497 ~~~~~~v~~l~~~~~~~~~rv~isT~q~m~~~i~~~~~~~~~~~~~FDlIIiDEaHRgy~ld~em~e~e~~~rd~~s~~s  576 (1126)
T PRK11448        497 FASIYDIKGLTDKFPEDETKVHVATVQSMVKRILQSDDSEPPPVGQYDCIVVDEAHRGYTLDKEMTEGELQFRDQLDYVS  576 (1126)
T ss_pred             CCHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHCCCCHHHHHH
T ss_conf             40022001025678787771999730789987523576779999851379897787887433231100010232024777


Q ss_pred             HHHHHHHHCCCCCCEEEEECCCC
Q ss_conf             89999972122111466506754
Q 537021.9.peg.4  125 GLLKTLEEPPPHVKFIFATTEIR  147 (369)
Q Consensus       125 aLLK~lEEPp~~~~fil~t~~~~  147 (369)
                      ....++|-. . .+.|-.|.-|.
T Consensus       577 kyr~IldYF-D-A~~iGLTATP~  597 (1126)
T PRK11448        577 KYRRVLDYF-D-AVKIGLTATPA  597 (1126)
T ss_pred             HHHHHHHHH-H-HHHHCCCCCCC
T ss_conf             899998762-1-55404767999


No 358
>pfam09115 DNApol3-delta_C DNA polymerase III, delta subunit, C terminal. Members of this family, which are predominantly found in prokaryotic DNA polymerase III, assume an alpha helical structure, with a core of five alpha helices, and an additional small helix. They are essential for the formation of the polymerase clamp loader.
Probab=95.17  E-value=0.33  Score=29.00  Aligned_cols=104  Identities=13%  Similarity=0.076  Sum_probs=79.4

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHH
Q ss_conf             78888763013633467887654304762135787775348999999745741223449988999999998629989999
Q 537021.9.peg.4  236 IMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLS  315 (369)
Q Consensus       236 i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~  315 (369)
                      ...+..++.++|.-..+..++     ..+...-+..+..++-|....+.   +.....++.|....+..+|..++.+.|.
T Consensus        12 ~~~l~~~l~~~d~l~ll~~l~-----~~~~~~~L~WL~~lL~DalK~q~---g~~~~~vn~D~~~li~~lA~~~s~~~L~   83 (119)
T pfam09115        12 CRAFWNFLKSPDPLSLLPLLN-----KEDALQRLHWLWSLLLDALKWQQ---GVSKFLINQDQIPLIQQLAERLSSEKLL   83 (119)
T ss_pred             HHHHHHHHCCCCHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHH---CCCHHHCCHHHHHHHHHHHHHCCHHHHH
T ss_conf             999999982799999978857-----22167889999999999999983---7644014677899999999888999999


Q ss_pred             HHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHH
Q ss_conf             9999999999983027--8889999999999953
Q 537021.9.peg.4  316 RFWQMILKGISEIEGF--SRPMEAVEMVLIRLAH  347 (369)
Q Consensus       316 ~~lq~l~~a~~~Lk~n--~np~L~lE~lLlkL~~  347 (369)
                      ..++.+..++.++...  .|..+.+.--|++...
T Consensus        84 ~~~~~~~~~r~qL~~~~glN~ELlL~~~Ll~we~  117 (119)
T pfam09115        84 AQLQKLLHLREQLQSVPGLNRELLLTEWLLRWEE  117 (119)
T ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf             9999999999998638874799999999999987


No 359
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.14  E-value=0.015  Score=39.02  Aligned_cols=26  Identities=31%  Similarity=0.433  Sum_probs=22.4

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             20107879888899999999961468
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLNYKT   49 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~c~~   49 (369)
                      ++|.||||+||+|.|+.+|+.+++.+
T Consensus         2 i~l~G~PGsGKgTqa~~La~~~~~~~   27 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYGLPH   27 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCEE
T ss_conf             89989999987999999999979846


No 360
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota.  The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed.  The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways.  Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO.  Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.09  E-value=0.061  Score=34.42  Aligned_cols=23  Identities=43%  Similarity=0.618  Sum_probs=18.3

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             62010787988889999999996
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      -+-+.||.|+||||+.+.++-.+
T Consensus        28 i~~iiG~nGaGKSTLl~~i~Gl~   50 (205)
T cd03226          28 IIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             99998899998999999995685


No 361
>TIGR00630 uvra excinuclease ABC, A subunit; InterPro: IPR004602   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).  During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products . The UvrC protein contain 4 conserved regions: a central region which interact with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0009380 excinuclease repair complex.
Probab=95.07  E-value=0.027  Score=37.11  Aligned_cols=99  Identities=22%  Similarity=0.325  Sum_probs=59.3

Q ss_pred             EEHHCCCCCCCHHHHHH--HHHH----HHCCCCCCCCCCCCCCCCCCHHHHHHHCC-CCCCCCCCCCCCC-CCHHH----
Q ss_conf             62010787988889999--9999----96146877788665878999779999779-8778222453322-33455----
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTAR--IIAR----SLNYKTAHIDVPTVEFEGFGEHCQAIIRG-NHVDVVELDAASH-TSIDD----   90 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~--~~A~----~l~c~~~~~~~~~~~~c~~c~~c~~i~~~-~~~d~~e~~~~s~-~~id~----   90 (369)
                      -.+|+|.-|+||+|+|.  +||.    ++  ++-..+            .|++... .-|||=.|+|-|- ++|||    
T Consensus        24 lVViTG~SGSGKSSLAFDTiYAEGQRRYv--ESLSaY------------ARQFLg~~~KPdVD~IEGLSPAIsIdQKtt~   89 (956)
T TIGR00630        24 LVVITGLSGSGKSSLAFDTIYAEGQRRYV--ESLSAY------------ARQFLGVMDKPDVDSIEGLSPAISIDQKTTS   89 (956)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHCCCHHH--HHHHHH------------HHHHCCCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf             69997456886154565467661450021--001589------------9986478747783501488761785125247


Q ss_pred             ---------HHHHHHHHH---------HHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf             ---------566555445---------6542046523775115664800167899999721221114665067
Q 537021.9.peg.4   91 ---------VREIIDQIY---------YKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTE  145 (369)
Q Consensus        91 ---------ir~l~~~~~---------~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~  145 (369)
                               |=||-+.++         |.|..++          .++.++.+-..-.+-+-|+++.++|.+.=
T Consensus        90 ~NPRSTVGTvTEIyDYLRLLfArvG~p~CP~~~~----------~i~~qt~~~Ivd~i~~~~~g~r~~lLAP~  152 (956)
T TIGR00630        90 HNPRSTVGTVTEIYDYLRLLFARVGTPYCPECGR----------PIEEQTVSQIVDQILALPEGTRVILLAPI  152 (956)
T ss_pred             CCCCCCCCCEEEHHHHHHHHHHHCCCCCCCCCCC----------HHHHCCHHHHHHHHHHCCCCCEEEEECCC
T ss_conf             8885544432103677899998368878887773----------26433878999998624899658996573


No 362
>cd03290 ABCC_SUR1_N The SUR domain 1.  The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains.  Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel.  Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism.  It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.04  E-value=0.091  Score=33.17  Aligned_cols=23  Identities=26%  Similarity=0.354  Sum_probs=18.8

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             62010787988889999999996
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      -+-+.||.|+||+|+.++++..+
T Consensus        29 ~~~IvG~sGsGKSTLl~~l~g~~   51 (218)
T cd03290          29 LTMIVGQVGCGKSSLLLAILGEM   51 (218)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             99999999980999999985556


No 363
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.02  E-value=0.046  Score=35.32  Aligned_cols=22  Identities=36%  Similarity=0.459  Sum_probs=17.8

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHH
Q ss_conf             6201078798888999999999
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARS   44 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~   44 (369)
                      -+-+.||.|+||||+.++++..
T Consensus        38 ~v~ivG~sGsGKSTLl~~i~Gl   59 (228)
T PRK10584         38 TIALIGESGSGKSTLLAILAGL   59 (228)
T ss_pred             EEEEECCCCCHHHHHHHHHHCC
T ss_conf             9999999985899999999669


No 364
>COG1485 Predicted ATPase [General function prediction only]
Probab=95.01  E-value=0.14  Score=31.74  Aligned_cols=126  Identities=19%  Similarity=0.144  Sum_probs=62.9

Q ss_pred             CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             67062010787988889999999996146877788665878999779999779877822245332233455566555445
Q 537021.9.peg.4   20 IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIY   99 (369)
Q Consensus        20 ~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~   99 (369)
                      .+..+-++|+-|.|||-+--.|=.+|     ....     -..+.- ..+....|-+++++-+.+    |-+..+.    
T Consensus        64 ~~~GlYl~GgVGrGKT~LMD~Fy~~l-----p~~~-----k~R~HF-h~FM~~vH~~l~~l~g~~----dpl~~iA----  124 (367)
T COG1485          64 PVRGLYLWGGVGRGKTMLMDLFYESL-----PGER-----KRRLHF-HRFMARVHQRLHTLQGQT----DPLPPIA----  124 (367)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHC-----CCCC-----CCCCCH-HHHHHHHHHHHHHHCCCC----CCCHHHH----
T ss_conf             88358888997864999999998658-----7645-----665507-799999999999971888----8657999----


Q ss_pred             HHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECC--CCCC-------------CHHHHHHHHHHHCCC
Q ss_conf             6542046523775115664800167899999721221114665067--5433-------------035675433321024
Q 537021.9.peg.4  100 YKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTE--IRKI-------------PITVLSRCQRFDLHR  164 (369)
Q Consensus       100 ~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~--~~~l-------------l~TI~SRcq~~~f~~  164 (369)
                       .-+-+.++|.-|||.+-=-..-+=-|-..+|+-=++=+.+.+|+|  |+.|             +.+|.+||+++++..
T Consensus       125 -~~~~~~~~vLCfDEF~VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY~dGlqR~~FLP~I~li~~~~~v~~vD~  203 (367)
T COG1485         125 -DELAAETRVLCFDEFEVTDIADAMILGRLLEALFARGVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSHFEVVNVDG  203 (367)
T ss_pred             -HHHHHCCCEEEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHEEEEEECC
T ss_conf             -9998417889863036237578899999999999779689995899967854460257763779999987547997058


Q ss_pred             C
Q ss_conf             5
Q 537021.9.peg.4  165 I  165 (369)
Q Consensus       165 l  165 (369)
                      .
T Consensus       204 ~  204 (367)
T COG1485         204 P  204 (367)
T ss_pred             C
T ss_conf             7


No 365
>PRK13764 ATPase; Provisional
Probab=94.98  E-value=0.034  Score=36.34  Aligned_cols=34  Identities=26%  Similarity=0.458  Sum_probs=25.6

Q ss_pred             HHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             999998287670620107879888899999999961
Q 537021.9.peg.4   11 LTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLN   46 (369)
Q Consensus        11 l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~   46 (369)
                      |..-+...  +...|.+||||.||+|+|.++|..++
T Consensus       251 l~~Rl~~~--a~GilIaG~PGaGKsTfaqalA~~~~  284 (605)
T PRK13764        251 LKERLEER--AEGILIAGAPGAGKSTFAQALAEFYA  284 (605)
T ss_pred             HHHHHHHC--CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             99988733--66499977999977899999999998


No 366
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter.  The CCM family is involved in bacterial cytochrome c biogenesis.  Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH).  CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH.  The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.98  E-value=0.081  Score=33.53  Aligned_cols=24  Identities=38%  Similarity=0.563  Sum_probs=19.2

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHH
Q ss_conf             706201078798888999999999
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARS   44 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~   44 (369)
                      +..+-+.||.|+||||+.++++--
T Consensus        26 Ge~~~l~G~NGsGKSTLlk~i~Gl   49 (201)
T cd03231          26 GEALQVTGPNGSGKTTLLRILAGL   49 (201)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf             959999999999999999999667


No 367
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.97  E-value=0.23  Score=30.25  Aligned_cols=27  Identities=26%  Similarity=0.317  Sum_probs=21.7

Q ss_pred             CCCEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             767062010787988889999999996
Q 537021.9.peg.4   19 RIAQSYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        19 ~~~ha~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      +-+.-+++.|+||.|||+++.-+|..+
T Consensus        17 ~~G~l~vi~g~pg~GKS~~~~~~a~~~   43 (186)
T pfam03796        17 QKGDLIIIAARPSMGKTAFALNIARNA   43 (186)
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             888179999679998799999999999


No 368
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids.  RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family.  Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft.  RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%.  The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.96  E-value=0.029  Score=36.78  Aligned_cols=104  Identities=16%  Similarity=0.228  Sum_probs=47.6

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             62010787988889999999996146877788665878999779999779877822245332233455566555445654
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKP  102 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p  102 (369)
                      -.-+.||.|+||||+.++++-.+....+...     ..|.       .-...|..+++++--     .-|-.+    -+.
T Consensus        27 iv~ilGpNGaGKSTllk~i~G~l~p~~G~i~-----~~g~-------~~~~~pq~~~LSGGq-----rQRv~i----Ara   85 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQLIPNGDNDE-----WDGI-------TPVYKPQYIDLSGGE-----LQRVAI----AAA   85 (177)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCCEE-----ECCC-------CEECCCCCCCCCHHH-----HHHHHH----HHH
T ss_conf             9999899999999999999688678899466-----6686-------122155515079899-----999999----999


Q ss_pred             HCCCCCEEEEECHH-HCCCCHHHHHHHHHHHCCC--CCCEEEEECCCC
Q ss_conf             20465237751156-6480016789999972122--111466506754
Q 537021.9.peg.4  103 ISARFRVYIMDEVQ-MLSTAAFNGLLKTLEEPPP--HVKFIFATTEIR  147 (369)
Q Consensus       103 ~~~~~kv~iid~a~-~m~~~a~NaLLK~lEEPp~--~~~fil~t~~~~  147 (369)
                      .-.+.+++++||.- .|-....-.+++.+.+--.  +..++++|++.+
T Consensus        86 l~~~p~lllLDEPts~LD~~~r~~i~~~ik~l~~~~~~Tvl~vsHdl~  133 (177)
T cd03222          86 LLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA  133 (177)
T ss_pred             HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf             823999999748865389999999999999999965977999858899


No 369
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.95  E-value=0.019  Score=38.19  Aligned_cols=32  Identities=41%  Similarity=0.651  Sum_probs=26.4

Q ss_pred             EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf             06201078798888999999999614687778
Q 537021.9.peg.4   22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHID   53 (369)
Q Consensus        22 ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~   53 (369)
                      ....|.|++|+||||+++.+|+.|++.--+.+
T Consensus         3 ~~I~LiG~mGsGKstiGk~LA~~L~~~fiD~D   34 (172)
T PRK03731          3 QPLFLVGPRGCGKTTVGMALAQALGYRFVDTD   34 (172)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCCCEEECC
T ss_conf             98899889999889999999998599979786


No 370
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217   Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=94.94  E-value=0.031  Score=36.63  Aligned_cols=36  Identities=33%  Similarity=0.431  Sum_probs=27.7

Q ss_pred             HHHHHHH-HCCCCCEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             9999999-828767062010787988889999999996
Q 537021.9.peg.4    9 KTLTNAF-KSGRIAQSYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus         9 ~~l~~~~-~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      +.|-..+ ++|+.-. -|+-|||-|||||+=|=+|+.+
T Consensus       111 ~~~~yL~d~~~~~~N-TLiIsPPq~GKTTlLRDlaR~~  147 (282)
T TIGR02858       111 KILPYLVDRNGRVLN-TLIISPPQCGKTTLLRDLARIL  147 (282)
T ss_pred             HHHHHHHCCCCCEEE-EEEECCCCCCCCCHHHHHHHHH
T ss_conf             668877305894467-8888688988510488898886


No 371
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.89  E-value=0.15  Score=31.52  Aligned_cols=87  Identities=18%  Similarity=0.197  Sum_probs=39.8

Q ss_pred             HCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCC-CCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             10787988889999999996146877788665878999779999779-87782224-53322334555665554456542
Q 537021.9.peg.4   26 LSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRG-NHVDVVEL-DAASHTSIDDVREIIDQIYYKPI  103 (369)
Q Consensus        26 f~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~-~~~d~~e~-~~~s~~~id~ir~l~~~~~~~p~  103 (369)
                      ++||+|+|||++|.-++  .+|+.+.....-++.+|.=+.-+.-.-+ ++.|-+.+ .+   ...++-.++++.+.-.-.
T Consensus        65 iyG~~gsGKT~lal~~~--~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~---~~~e~q~~i~~~~~~~~~  139 (279)
T COG0468          65 IYGPESSGKTTLALQLV--ANAQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQP---DTGEQQLEIAEKLARSGA  139 (279)
T ss_pred             EECCCCCCHHHHHHHHH--HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEECC---CCHHHHHHHHHHHHHHCC
T ss_conf             84688765466899998--8865379808999589998999999988754215368668---977999999999987546


Q ss_pred             CCCCCEEEEECHHHC
Q ss_conf             046523775115664
Q 537021.9.peg.4  104 SARFRVYIMDEVQML  118 (369)
Q Consensus       104 ~~~~kv~iid~a~~m  118 (369)
                      + +.+++|||.+-.+
T Consensus       140 ~-~i~LvVVDSvaa~  153 (279)
T COG0468         140 E-KIDLLVVDSVAAL  153 (279)
T ss_pred             C-CCCEEEEECCCCC
T ss_conf             8-8788998257434


No 372
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.88  E-value=0.25  Score=29.90  Aligned_cols=37  Identities=32%  Similarity=0.333  Sum_probs=26.7

Q ss_pred             HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             9999999828767062010787988889999999996
Q 537021.9.peg.4    9 KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus         9 ~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      ..|-+.+.-=+-++-+++.|+||+|||+++.-+|..+
T Consensus        18 ~~LD~~~~Gl~~GeL~viaarpg~GKT~f~~~~a~~~   54 (271)
T cd01122          18 PVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDL   54 (271)
T ss_pred             HHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             6688873799998089999689986999999999999


No 373
>PRK10536 hypothetical protein; Provisional
Probab=94.88  E-value=0.049  Score=35.11  Aligned_cols=123  Identities=19%  Similarity=0.152  Sum_probs=58.8

Q ss_pred             HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-C---CCCCCHHHHHHHCCCCCCCC-C----
Q ss_conf             9999999828767062010787988889999999996146877788665-8---78999779999779877822-2----
Q 537021.9.peg.4    9 KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV-E---FEGFGEHCQAIIRGNHVDVV-E----   79 (369)
Q Consensus         9 ~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~-~---~c~~c~~c~~i~~~~~~d~~-e----   79 (369)
                      +.+-+++.++.+-   +-.||+|+|||-+|-+.|-.++-+. ..+.... -   +.|.       .-|--|--+ |    
T Consensus        65 ~~yi~~i~~~~iv---f~~GpAGTGKT~lA~a~Al~~l~~~-~~~kIIltRP~V~~ge-------~lGfLPGdl~EK~~P  133 (262)
T PRK10536         65 LHYLKAIESKQLI---FATGEAGCGKTWISAAKAAEALIHK-DVDRIIVTRPVLQADE-------DLGFLPGDIAEKFAP  133 (262)
T ss_pred             HHHHHHHHHCCEE---EEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCC-------CCCCCCCCHHHHHHH
T ss_conf             9999998619839---9989998758999999999999858-8868999667875676-------667698987998878


Q ss_pred             -C----CCCC-CCCHHHHHHH-------HHHHHHHHHCCC---CCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             -4----5332-2334555665-------554456542046---5237751156648001678999997212211146650
Q 537021.9.peg.4   80 -L----DAAS-HTSIDDVREI-------IDQIYYKPISAR---FRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFAT  143 (369)
Q Consensus        80 -~----~~~s-~~~id~ir~l-------~~~~~~~p~~~~---~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t  143 (369)
                       +    |.-. ..+.+.+..+       ++...+.-.+|+   ..++|+|||..+|..-.-.+|   -.-..++.+|++.
T Consensus       134 yl~Pi~D~L~~~lg~~~~~~~~~~e~G~Iei~PlafmRGrTf~na~IIvDEaQN~T~~qmk~iL---TRiG~~SKiVi~G  210 (262)
T PRK10536        134 YFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFL---TRLGENVTVIVNG  210 (262)
T ss_pred             HHHHHHHHHHHHHCHHHHHHHHHHHCCCEEEEEHHHHCCCCCCCEEEEEEHHHCCCHHHHHHHH---HHCCCCCEEEEEC
T ss_conf             8878999999996859999998730594899875874477514428998412128999998898---5425996899968


Q ss_pred             CC
Q ss_conf             67
Q 537021.9.peg.4  144 TE  145 (369)
Q Consensus       144 ~~  145 (369)
                      .-
T Consensus       211 D~  212 (262)
T PRK10536        211 DI  212 (262)
T ss_pred             CC
T ss_conf             82


No 374
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=94.87  E-value=0.018  Score=38.32  Aligned_cols=24  Identities=42%  Similarity=0.544  Sum_probs=20.8

Q ss_pred             HHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             010787988889999999996146
Q 537021.9.peg.4   25 MLSGTRGIGKTTTARIIARSLNYK   48 (369)
Q Consensus        25 lf~G~~G~GK~~~a~~~A~~l~c~   48 (369)
                      .|+||+|+||+++|+.+|+.+...
T Consensus         2 ~l~G~~G~GKS~~a~~la~~~~~~   25 (105)
T pfam00910         2 WLYGPPGCGKSTLAKYLARALLDH   25 (105)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHH
T ss_conf             897999898899999999999998


No 375
>KOG1533 consensus
Probab=94.82  E-value=0.12  Score=32.24  Aligned_cols=37  Identities=14%  Similarity=0.266  Sum_probs=25.1

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCEE-------EEECCCCCCCHHHHHH
Q ss_conf             48001678999997212211146-------6506754330356754
Q 537021.9.peg.4  118 LSTAAFNGLLKTLEEPPPHVKFI-------FATTEIRKIPITVLSR  156 (369)
Q Consensus       118 m~~~a~NaLLK~lEEPp~~~~fi-------l~t~~~~~ll~TI~SR  156 (369)
                      ++.++-|..+|.||.  .+..+.       ..|++|++.+.+..+-
T Consensus       112 t~h~~l~~I~~~Lek--~~~rl~~V~LiDs~ycs~p~~~iS~lL~s  155 (290)
T KOG1533         112 THHDSLNKIFRKLEK--LDYRLVAVNLIDSHYCSDPSKFISSLLVS  155 (290)
T ss_pred             ECCCHHHHHHHHHHH--CCCEEEEEEEEECEEECCHHHHHHHHHHH
T ss_conf             425609999999997--69537999733021437848999999999


No 376
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=94.81  E-value=0.02  Score=38.01  Aligned_cols=27  Identities=26%  Similarity=0.358  Sum_probs=22.4

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             620107879888899999999961468
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSLNYKT   49 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l~c~~   49 (369)
                      -.=+.||+|+||||+|+.+++.|+-..
T Consensus        36 lIgIaG~pGSGKSTlA~~l~~~L~~~~   62 (230)
T PRK09270         36 VVGIAGPPGAGKSTLAETLWEALSQQG   62 (230)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf             999989998899999999999986237


No 377
>KOG2228 consensus
Probab=94.80  E-value=0.064  Score=34.29  Aligned_cols=166  Identities=22%  Similarity=0.299  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHH-HHHHHHHCCCCCCCCCCCCCCCCCCHHH----HHHH----CCCC
Q ss_conf             48999999999982876706201078798888999-9999996146877788665878999779----9997----7987
Q 537021.9.peg.4    4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTA-RIIARSLNYKTAHIDVPTVEFEGFGEHC----QAII----RGNH   74 (369)
Q Consensus         4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a-~~~A~~l~c~~~~~~~~~~~~c~~c~~c----~~i~----~~~~   74 (369)
                      |+++-+.+++.+..|. +|+.++.||+|+|||.+. .+++.  +-+.+ ...-+....|.-.+=    +.|.    ....
T Consensus        33 ~~~l~~~lkqt~~~gE-snsviiigprgsgkT~li~~~Ls~--~q~~~-E~~l~v~Lng~~~~dk~al~~I~rql~~e~~  108 (408)
T KOG2228          33 QKHLSELLKQTILHGE-SNSVIIIGPRGSGKTILIDTRLSD--IQENG-ENFLLVRLNGELQTDKIALKGITRQLALELN  108 (408)
T ss_pred             HHHHHHHHHHHHHHCC-CCCEEEECCCCCCCEEEEHHHHHH--HHHCC-CEEEEEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999998447-772699814778816740778766--77517-7279998785001558999999999999975


Q ss_pred             CCCCCCCCCCCCCH-HHHHHHHHHHHHHH-HCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC----CCCCEEEEECCC--
Q ss_conf             78222453322334-55566555445654-20465237751156648001678999997212----211146650675--
Q 537021.9.peg.4   75 VDVVELDAASHTSI-DDVREIIDQIYYKP-ISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP----PHVKFIFATTEI--  146 (369)
Q Consensus        75 ~d~~e~~~~s~~~i-d~ir~l~~~~~~~p-~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp----~~~~fil~t~~~--  146 (369)
                      .++.     +-.+. |..-.+.+-+..+- ..+..-|||.||.|.+-...-..||=-+=+-.    ..+..|.+|+..  
T Consensus       109 ~~~k-----~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~  183 (408)
T KOG2228         109 RIVK-----SFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDI  183 (408)
T ss_pred             HHHE-----EECCCCHHHHHHHHHHHCCCCCCCCEEEEEEEHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCH
T ss_conf             3212-----42253346999999873378778851999831000246403567899998887624798699985032338


Q ss_pred             -CCCCHHHHHHH---HHHHCCCCCCHHHHHHHHHHH
Q ss_conf             -43303567543---332102454001356787643
Q 537021.9.peg.4  147 -RKIPITVLSRC---QRFDLHRISIGDLIELFTKIL  178 (369)
Q Consensus       147 -~~ll~TI~SRc---q~~~f~~l~~~~i~~~L~~i~  178 (369)
                       +.+=.-..||-   |++-+++.+-++.++.+++.+
T Consensus       184 lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll  219 (408)
T KOG2228         184 LELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL  219 (408)
T ss_pred             HHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHH
T ss_conf             999999987433552462269888588999999973


No 378
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=94.78  E-value=0.19  Score=30.87  Aligned_cols=147  Identities=17%  Similarity=0.155  Sum_probs=72.7

Q ss_pred             CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCC--CCCCCCCCCCCHHHHHHHCCCCCCCCC---CCCC---CC---C
Q ss_conf             87670620107879888899999999961468777--886658789997799997798778222---4533---22---3
Q 537021.9.peg.4   18 GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHI--DVPTVEFEGFGEHCQAIIRGNHVDVVE---LDAA---SH---T   86 (369)
Q Consensus        18 ~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~--~~~~~~~c~~c~~c~~i~~~~~~d~~e---~~~~---s~---~   86 (369)
                      .+.|| ++..|.+|+||+++...+-.++.......  ...+++|++.--+  .+.  ..|.+..   -|..   .+   .
T Consensus       528 ak~~h-lli~G~tgsGKSv~lnt~i~Sll~~~~P~ev~~~~iD~k~~~L~--~~~--~iPHl~~~v~td~~~k~~~al~~  602 (858)
T COG1674         528 AKAGH-LLIAGATGSGKSVALNTMILSLLYTHSPEEVRFYIIDPKMLELA--AYD--GLPHLGDPVVTDEKEKAEKALAE  602 (858)
T ss_pred             CCCCC-EEEECCCCCCHHHHHHHHHHHHHHCCCCHHEEEEEECCCCCCCH--HHC--CCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             56888-78824888651558999999987518906849999747875433--330--69855772324747789999999


Q ss_pred             CHHH------------HHHHHHHHHH-----HHHCCCCCEEEEECHHHCCCCH----HHHHHHHHHH-CCCCCCEEEEEC
Q ss_conf             3455------------5665554456-----5420465237751156648001----6789999972-122111466506
Q 537021.9.peg.4   87 SIDD------------VREIIDQIYY-----KPISARFRVYIMDEVQMLSTAA----FNGLLKTLEE-PPPHVKFIFATT  144 (369)
Q Consensus        87 ~id~------------ir~l~~~~~~-----~p~~~~~kv~iid~a~~m~~~a----~NaLLK~lEE-Pp~~~~fil~t~  144 (369)
                      -+++            +|++..+=..     .-..=+|.|+||||...|-..+    -+++-+..=+ ...+.-.|++|.
T Consensus       603 ~~~eme~R~~l~~~~~vr~i~~yn~k~~~~~~~~~lP~iviiiDe~adlm~~~~k~ve~~i~rLa~~ara~GIHlilatq  682 (858)
T COG1674         603 LVAEMERRYKLFSEKGVRNIEGYNEKIAGAIPDEELPYIVIIIDEYADLMMVAGKELEELIARLAQKGRAAGIHLILATQ  682 (858)
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             99999999998888566627777654202455567980899944478886123176999999999978765826999748


Q ss_pred             CCCC-CCHHHHHHH-HHHHCCCCCCHH
Q ss_conf             7543-303567543-332102454001
Q 537021.9.peg.4  145 EIRK-IPITVLSRC-QRFDLHRISIGD  169 (369)
Q Consensus       145 ~~~~-ll~TI~SRc-q~~~f~~l~~~~  169 (369)
                      .|+. +++.|+..- .++.|+--+..+
T Consensus       683 Rps~dVit~ikan~psrIaf~v~s~~d  709 (858)
T COG1674         683 RPSVDVITGIKANIPTRIALRLSSKID  709 (858)
T ss_pred             CCCCCHHHHHHHCCCCCEEEEECCCCC
T ss_conf             999504088885387525665168765


No 379
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE).  They are clustered together phylogenetically.  MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all.  An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport.  The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.77  E-value=0.068  Score=34.08  Aligned_cols=24  Identities=25%  Similarity=0.307  Sum_probs=18.7

Q ss_pred             EEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             062010787988889999999996
Q 537021.9.peg.4   22 QSYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        22 ha~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      .-+-+.||.|+||||+.+.++..+
T Consensus        31 e~~~iiG~sGsGKTTll~~i~Gl~   54 (218)
T cd03255          31 EFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             CEEEEECCCCCHHHHHHHHHHCCC
T ss_conf             899999999986999999996699


No 380
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=94.77  E-value=0.072  Score=33.91  Aligned_cols=24  Identities=29%  Similarity=0.648  Sum_probs=19.4

Q ss_pred             EEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             062010787988889999999996
Q 537021.9.peg.4   22 QSYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        22 ha~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      --+-+-||.||||||+.|.++.-+
T Consensus        55 Ei~~ivG~SGsGKSTLlr~i~gL~   78 (400)
T PRK10070         55 EIFVIMGLSGSGKSTMVRLLNRLI   78 (400)
T ss_pred             CEEEEECCCCCHHHHHHHHHHCCC
T ss_conf             999999999846999999997599


No 381
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.77  E-value=0.022  Score=37.76  Aligned_cols=86  Identities=21%  Similarity=0.361  Sum_probs=48.2

Q ss_pred             HCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC-CCCCC-CHHHHHHHHHHHHHHHH
Q ss_conf             10787988889999999996146877788665878999779999779877822245-33223-34555665554456542
Q 537021.9.peg.4   26 LSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELD-AASHT-SIDDVREIIDQIYYKPI  103 (369)
Q Consensus        26 f~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~-~~s~~-~id~ir~l~~~~~~~p~  103 (369)
                      +.||+|+||+|+|+.+|+.|++..-..+.              +      ..-++. .+|.+ +..+||..+...+.. +
T Consensus         4 IdGpagsGKsT~ak~lA~~l~~~~ldtG~--------------i------r~~ev~~~~s~ia~~~~VR~~l~~~Qr~-~   62 (147)
T cd02020           4 IDGPAGSGKSTVAKLLAKKLGLPYLDTGG--------------I------RTEEVGKLASEVAAIPEVRKALDERQRE-L   62 (147)
T ss_pred             EECCCCCCHHHHHHHHHHHHCCEEECCCC--------------C------CCHHHHHHHHHHCCCHHHHHHHHHHHHH-H
T ss_conf             86899789899999999990990776654--------------2------5489989999981978899999999999-9


Q ss_pred             CCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             0465237751156648001678999997212211146650
Q 537021.9.peg.4  104 SARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFAT  143 (369)
Q Consensus       104 ~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t  143 (369)
                      . ..+=+|+|.=|.=+.-.          |-..+.|+|.+
T Consensus        63 ~-~~~~~V~eGRDigtvV~----------P~A~lKifL~A   91 (147)
T cd02020          63 A-KKPGIVLEGRDIGTVVF----------PDADLKIFLTA   91 (147)
T ss_pred             H-HCCCEEEECCCCCCEEC----------CCCCEEEEEEC
T ss_conf             7-66996897131010244----------67476777758


No 382
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=94.76  E-value=0.078  Score=33.65  Aligned_cols=128  Identities=20%  Similarity=0.269  Sum_probs=67.2

Q ss_pred             CCCHHHHHHHHHHHHHCC---CC---------CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             928489999999999828---76---------706201078798888999999999614687778866587899977999
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSG---RI---------AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQA   68 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~---~~---------~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~   68 (369)
                      |-||+.|++.+-=++-.|   .+         -| .|+.|.||+||+.+=+.+++..    +...+    .+|++.+--.
T Consensus       288 IyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDIn-ILLvGDPgtaKSqlLk~v~~~a----Pr~vy----tsgkgss~~G  358 (682)
T COG1241         288 IYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIH-ILLVGDPGTAKSQLLKYVAKLA----PRGVY----TSGKGSSAAG  358 (682)
T ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE-EEECCCCCHHHHHHHHHHHHHC----CCEEE----ECCCCCCCCC
T ss_conf             0381999999999960897664799862024226-9981798251999999988648----84079----7264125457


Q ss_pred             HHCCCCCCCCCCCCCCCCCH-HHH-HH-HHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf             97798778222453322334-555-66-5554456542046523775115664800167899999721221114665067
Q 537021.9.peg.4   69 IIRGNHVDVVELDAASHTSI-DDV-RE-IIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTE  145 (369)
Q Consensus        69 i~~~~~~d~~e~~~~s~~~i-d~i-r~-l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~  145 (369)
                              +   .|+   .+ |.+ -+ .++-=.+  .-++.=|+-|||.|+|+....+|+.-.||   .+|+=|-    
T Consensus       359 --------L---TAa---v~rd~~tge~~LeaGAL--VlAD~Gv~cIDEfdKm~~~dr~aihEaME---QQtIsIa----  415 (682)
T COG1241         359 --------L---TAA---VVRDKVTGEWVLEAGAL--VLADGGVCCIDEFDKMNEEDRVAIHEAME---QQTISIA----  415 (682)
T ss_pred             --------C---EEE---EEECCCCCEEEEECCEE--EEECCCEEEEEECCCCCHHHHHHHHHHHH---HCEEEEC----
T ss_conf             --------3---069---99706776078867779--99249779997056777678999999987---5275120----


Q ss_pred             CCCCCHHHHHHHHHH
Q ss_conf             543303567543332
Q 537021.9.peg.4  146 IRKIPITVLSRCQRF  160 (369)
Q Consensus       146 ~~~ll~TI~SRcq~~  160 (369)
                      ---|..|.-+||-++
T Consensus       416 KAGI~atLnARcsvL  430 (682)
T COG1241         416 KAGITATLNARCSVL  430 (682)
T ss_pred             CCCEEEECCHHHHHH
T ss_conf             554254111444456


No 383
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport.  These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2).  No known transmembrane proteins or domains are associated with these proteins.
Probab=94.74  E-value=0.093  Score=33.09  Aligned_cols=110  Identities=17%  Similarity=0.131  Sum_probs=51.7

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC-----CCCCCCCCCHHHHHHHHHH
Q ss_conf             62010787988889999999996146877788665878999779999779877822-----2453322334555665554
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVV-----ELDAASHTSIDDVREIIDQ   97 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~-----e~~~~s~~~id~ir~l~~~   97 (369)
                      -.+++||.|.||||+-|.++-.+.........|          +........|.+.     ..+..|. +--+...+..-
T Consensus        23 ~~iItGpN~sGKSt~Lr~i~l~~~~a~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~lSg-g~~~~~~l~~~   91 (162)
T cd03227          23 LTIITGPNGSGKSTILDAIGLALGGAQSATRRR----------SGVKAGCIVAAVSAELIFTRLQLSG-GEKELSALALI   91 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCC----------HHHHCCCCCHHHEEEEEECCCCCCC-CHHHHHHHHHH
T ss_conf             899989987757999999999999863267752----------5554277640230576641200054-29999999999


Q ss_pred             HHHHHHCCCCCEEEEECHHH-CCC----CHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf             45654204652377511566-480----016789999972122111466506754
Q 537021.9.peg.4   98 IYYKPISARFRVYIMDEVQM-LST----AAFNGLLKTLEEPPPHVKFIFATTEIR  147 (369)
Q Consensus        98 ~~~~p~~~~~kv~iid~a~~-m~~----~a~NaLLK~lEEPp~~~~fil~t~~~~  147 (369)
                      +... ..++..++++||.-. ++.    ..+.++++.+.+   ++.+|++|+.++
T Consensus        92 l~~~-~~~~~~lillDE~~~Gtd~~~~~~l~~~i~~~~~~---~~~~i~tTH~~e  142 (162)
T cd03227          92 LALA-SLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK---GAQVIVITHLPE  142 (162)
T ss_pred             HHHC-CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC---CCEEEEECCHHH
T ss_conf             9854-24898489963655799988999999999999976---998999797399


No 384
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter; InterPro: IPR005897   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     This family contains ABC-type bacteriocin transporter. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.    Peptide bacteriocins are exported across the cytoplasmic membrane by a dedicated ATP-binding cassette (ABC) transporter. These ABC-transporters have an N-terminal peptidase domain that belong to MEROPS peptidase family C39 (clan CA); a central multi-pass transmembrane region and a C-terminal ABC transporter domain. These transporters have dual function: (i) they remove the N-terminal leader peptide from its bacteriocin precursor by cleavage at a Gly-Gly bond and (ii) transport the mature bacteriocin across the cytoplasmic membrane. This represents a novel strategy for secretion of bacterial proteins . Many bacteria are known to regulate diverse physiological processes through this system, such as bioluminescence, regulation of sporulation, virulence factor expression, antibiotics production, competence for genetic transformation, and activation of biofilm formation .; GO: 0008234 cysteine-type peptidase activity, 0019534 toxin transporter activity, 0006810 transport, 0016020 membrane.
Probab=94.72  E-value=0.074  Score=33.83  Aligned_cols=23  Identities=26%  Similarity=0.475  Sum_probs=17.9

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             62010787988889999999996
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      ..=+.|+-|+||||+|+.+-+-.
T Consensus       502 k~tiVGmSGSGKsTLaKLLV~Ff  524 (710)
T TIGR01193       502 KITIVGMSGSGKSTLAKLLVGFF  524 (710)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             48997367974899998752035


No 385
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=94.71  E-value=0.2  Score=30.66  Aligned_cols=111  Identities=23%  Similarity=0.247  Sum_probs=53.8

Q ss_pred             HHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCHHHHHHHC-CCCCCCCCCCCCCC
Q ss_conf             999999998287670620107879888899999999961468777886658-7899977999977-98778222453322
Q 537021.9.peg.4    8 IKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVE-FEGFGEHCQAIIR-GNHVDVVELDAASH   85 (369)
Q Consensus         8 ~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~-~c~~c~~c~~i~~-~~~~d~~e~~~~s~   85 (369)
                      ++.+.+-....|-|  +|+.||.|.||+-+||..-..-...+ +.+++.++ -|.+-.--..++. ..|     +-++ -
T Consensus       197 ieqierva~rsr~p--~ll~gptgagksflarriyelk~arh-q~sg~fvevncatlrgd~amsalfgh-----vkga-f  267 (531)
T COG4650         197 IEQIERVAIRSRAP--ILLNGPTGAGKSFLARRIYELKQARH-QFSGAFVEVNCATLRGDTAMSALFGH-----VKGA-F  267 (531)
T ss_pred             HHHHHHHHHHCCCC--EEEECCCCCCHHHHHHHHHHHHHHHH-HCCCCEEEEEEEEECCCHHHHHHHHH-----HHCC-C
T ss_conf             99999998614697--68646887436689999999998887-53786278863000475288998764-----0013-1


Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC
Q ss_conf             334555665554456542046523775115664800167899999721
Q 537021.9.peg.4   86 TSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP  133 (369)
Q Consensus        86 ~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP  133 (369)
                      +|..+-|+=+    +++..|+  ..++||.-.+-.+-|--|||.+||-
T Consensus       268 tga~~~r~gl----lrsadgg--mlfldeigelgadeqamllkaieek  309 (531)
T COG4650         268 TGARESREGL----LRSADGG--MLFLDEIGELGADEQAMLLKAIEEK  309 (531)
T ss_pred             CCCHHHHHHH----HCCCCCC--EEEHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             4633455442----4337786--5756743324752788999998871


No 386
>PRK02496 adk adenylate kinase; Provisional
Probab=94.70  E-value=0.022  Score=37.68  Aligned_cols=26  Identities=31%  Similarity=0.478  Sum_probs=22.4

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             20107879888899999999961468
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLNYKT   49 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~c~~   49 (369)
                      .+|.||||+||.|.|+.+|+.+++.+
T Consensus         4 iillG~PGSGKgTqa~~L~~~~~~~h   29 (185)
T PRK02496          4 LIFLGPPGAGKGTQAVVLAEHLQIPH   29 (185)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCEE
T ss_conf             99979999998999999999969977


No 387
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK.  ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles.  ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP.  In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.66  E-value=0.039  Score=35.90  Aligned_cols=22  Identities=50%  Similarity=0.579  Sum_probs=17.5

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHH
Q ss_conf             6201078798888999999999
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARS   44 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~   44 (369)
                      -.-+.||.|+||||+.+++|--
T Consensus        28 ~~~i~GpSG~GKSTlLr~iaGl   49 (213)
T cd03301          28 FVVLLGPSGCGKTTTLRMIAGL   49 (213)
T ss_pred             EEEEECCCCCHHHHHHHHHHCC
T ss_conf             9999999988099999999769


No 388
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=94.66  E-value=0.023  Score=37.52  Aligned_cols=44  Identities=20%  Similarity=0.228  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             48999999999982876706201078798888999999999614
Q 537021.9.peg.4    4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNY   47 (369)
Q Consensus         4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c   47 (369)
                      |++.++.=.+...+++-+--+=|||+.|+||||+|-|+.+.|.-
T Consensus         2 H~~~~t~~~r~~~~~h~g~vlWlTGLSGsGKsTiA~Al~~~L~~   45 (187)
T TIGR00455         2 HPAAITKDERQALNKHRGVVLWLTGLSGSGKSTIANALEKKLEK   45 (187)
T ss_pred             CCCCCCHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf             88777878999862797389851168856357999999999996


No 389
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient.  The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes.  The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system.  PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein.  PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.60  E-value=0.13  Score=32.08  Aligned_cols=24  Identities=33%  Similarity=0.458  Sum_probs=19.4

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             620107879888899999999961
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSLN   46 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l~   46 (369)
                      .+-+.||.|+||||+.+.++.-+-
T Consensus        28 ~~~iiG~SGsGKSTll~~i~gL~~   51 (227)
T cd03260          28 ITALIGPSGCGKSTLLRLLNRLND   51 (227)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             999999999819999999974450


No 390
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=94.57  E-value=0.037  Score=36.02  Aligned_cols=34  Identities=29%  Similarity=0.520  Sum_probs=16.0

Q ss_pred             HHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             9999828767062010787988889999999996
Q 537021.9.peg.4   12 TNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        12 ~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      .++-..|.-|....|+|.+|+||+|+|+++.+.|
T Consensus       434 ~R~~~~g~~~~~iw~tGlsgsGKstiA~~le~~L  467 (613)
T PRK05506        434 ARAARKGQKPATVWFTGLSGSGKSTIANLVERRL  467 (613)
T ss_pred             HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             9999748997699997789897479999999999


No 391
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=94.57  E-value=0.18  Score=31.05  Aligned_cols=28  Identities=29%  Similarity=0.404  Sum_probs=23.3

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             7062010787988889999999996146
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARSLNYK   48 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~   48 (369)
                      ++-+-|+|.+|+||||+|+.+.+.|...
T Consensus         2 G~viW~TGLsGsGKTTlA~~l~~~L~~~   29 (157)
T pfam01583         2 GCTVWFTGLSGSGKSTIANALERKLFAQ   29 (157)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             8899988989999999999999999975


No 392
>PRK13768 GTPase; Provisional
Probab=94.57  E-value=0.03  Score=36.73  Aligned_cols=28  Identities=29%  Similarity=0.303  Sum_probs=23.2

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             7062010787988889999999996146
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARSLNYK   48 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~   48 (369)
                      +.+.++.||+|+||||+...+.+.+-..
T Consensus         2 ~~~~~ViGpaGSGKsT~~~~l~~~l~~~   29 (253)
T PRK13768          2 MYIVFFLGTAGSGKTTLVGALSDWLEEQ   29 (253)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             7189998999998899999999999976


No 393
>PRK08118 topology modulation protein; Reviewed
Probab=94.55  E-value=0.029  Score=36.86  Aligned_cols=29  Identities=38%  Similarity=0.597  Sum_probs=23.6

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf             20107879888899999999961468777
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLNYKTAHI   52 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~   52 (369)
                      .+..|++|+||+|+|+.+|+.+++..-+.
T Consensus         4 I~IiG~~GsGKSTlAr~L~~~~~ip~~~L   32 (167)
T PRK08118          4 IILIGSGGSGKSTLARQLGEKLNIPVHHL   32 (167)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEC
T ss_conf             99988999879999999999889697964


No 394
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.50  E-value=0.088  Score=33.28  Aligned_cols=20  Identities=35%  Similarity=0.498  Sum_probs=16.9

Q ss_pred             EEHHCCCCCCCHHHHHHHHH
Q ss_conf             62010787988889999999
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIA   42 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A   42 (369)
                      -+.+.||.|+||||+-++++
T Consensus        26 ~~~i~GpSGsGKSTLL~~i~   45 (206)
T TIGR03608        26 MVAIVGESGSGKSTLLNIIG   45 (206)
T ss_pred             EEEEECCCCCCHHHHHHHHH
T ss_conf             99998799970999999997


No 395
>KOG0925 consensus
Probab=94.49  E-value=0.23  Score=30.21  Aligned_cols=113  Identities=24%  Similarity=0.302  Sum_probs=54.8

Q ss_pred             CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH------HHHHHCCCCCCCC---CC-------CCC
Q ss_conf             6706201078798888999999999614687778866587899977------9999779877822---24-------533
Q 537021.9.peg.4   20 IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEH------CQAIIRGNHVDVV---EL-------DAA   83 (369)
Q Consensus        20 ~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~------c~~i~~~~~~d~~---e~-------~~~   83 (369)
                      -.+..+|.|..|+||||-.--|.-.- |..-...    -.|-+-..      .+++..  -.||.   |+       |-.
T Consensus        61 ~nQ~~v~vGetgsGKttQiPq~~~~~-~~~~~~~----v~CTQprrvaamsva~RVad--EMDv~lG~EVGysIrfEdC~  133 (699)
T KOG0925          61 NNQIIVLVGETGSGKTTQIPQFVLEY-ELSHLTG----VACTQPRRVAAMSVAQRVAD--EMDVTLGEEVGYSIRFEDCT  133 (699)
T ss_pred             CCCEEEEEECCCCCCCCCCCHHHHHH-HHHHCCC----EEECCCHHHHHHHHHHHHHH--HHCCCCCHHCCCCCCCCCCC
T ss_conf             48269999348888645474999999-8763366----13247157889999998888--74431020115321212368


Q ss_pred             CCCCH-----HHHHHHHHHHHHHHHCCCCCEEEEECHHHC--CCCHHHHHHHH--HHHCCCCCCEEEE
Q ss_conf             22334-----555665554456542046523775115664--80016789999--9721221114665
Q 537021.9.peg.4   84 SHTSI-----DDVREIIDQIYYKPISARFRVYIMDEVQML--STAAFNGLLKT--LEEPPPHVKFIFA  142 (369)
Q Consensus        84 s~~~i-----d~ir~l~~~~~~~p~~~~~kv~iid~a~~m--~~~a~NaLLK~--lEEPp~~~~fil~  142 (369)
                      |+..+     |  +-|+..+.-.|.-|+|+|+|+||||.=  -++.--.|||-  ++.| +--+.|+.
T Consensus       134 ~~~T~Lky~tD--gmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rp-dLk~vvmS  198 (699)
T KOG0925         134 SPNTLLKYCTD--GMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRP-DLKLVVMS  198 (699)
T ss_pred             CHHHHHHHHCC--HHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEE
T ss_conf             71589999533--2899987508554530079953166666789999999999986198-81699940


No 396
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.46  E-value=0.078  Score=33.66  Aligned_cols=195  Identities=18%  Similarity=0.147  Sum_probs=88.0

Q ss_pred             CCHHHHHHHHH----HHHHCCCC-CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf             28489999999----99982876-70620107879888899999999961468777886658789997799997798778
Q 537021.9.peg.4    2 IGQKPMIKTLT----NAFKSGRI-AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVD   76 (369)
Q Consensus         2 iGq~~~~~~l~----~~~~~~~~-~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d   76 (369)
                      -|.+.++..+-    .+.+.+.. -..+++.||.|.||+++|+.+-+.+.-.    ...+.+.   |+      ...||=
T Consensus        61 fGme~~i~~iV~~~ksAA~g~e~~kqIllL~GPVGsGKSsl~e~LK~glE~y----~~Y~i~g---sP------m~e~PL  127 (358)
T pfam08298        61 FGMEETIERIVNYFRHAAQGLEERKQILYLLGPVGGGKSSLAERLKKLLELV----PIYALKG---SP------VFESPL  127 (358)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCC----CEEEECC---CC------CCCCCC
T ss_conf             0159999999999999972367210589997789877589999999872058----6488448---97------778985


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf             22245332233455566555445654204652377511566480016789999972122111466506754330356754
Q 537021.9.peg.4   77 VVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSR  156 (369)
Q Consensus        77 ~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SR  156 (369)
                      .+ +      .-++.|+..++-.=-|   ++  . |+.  .|+.-+    .+-|||.-...--+    ...++.+.++.|
T Consensus       128 ~L-~------~p~~~r~~le~~~gi~---~~--~-i~g--~l~P~~----~~rL~e~~Gd~~~~----~V~r~~~S~~~r  184 (358)
T pfam08298       128 HL-F------NPHHLRDILEDEYGIP---RR--R-LEG--DLSPWC----TKRLEEFGGDIEKF----KVVKIFPSILRQ  184 (358)
T ss_pred             CC-C------CHHHHHHHHHHHHCCC---HH--H-CCC--CCCHHH----HHHHHHHCCCHHHE----EEEEECCCCCCC
T ss_conf             47-7------8677599999874995---21--2-089--889899----99999938985527----899955560045


Q ss_pred             HHHHHCCCCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHH-CCCCHHHHHHCCCCCCH
Q ss_conf             33321024540--0135678764310134562566445653167642001100011100000-01210322000135677
Q 537021.9.peg.4  157 CQRFDLHRISI--GDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCN-DKIVTSSVRLMLALADR  233 (369)
Q Consensus       157 cq~~~f~~l~~--~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~-~~i~~e~v~~llg~~~~  233 (369)
                      .=+-.|.|-++  +++....-    +       ..+..++.+++.++| |.+.= =++..++ +-+...++.    ..+.
T Consensus       185 ~gi~t~~P~D~~nqD~s~L~G----~-------vdi~kl~~~~~~dP~-a~~~~-G~l~~aNrGl~efvE~~----K~~~  247 (358)
T pfam08298       185 IGIAKTEPGDENNQDISALVG----K-------VDIRKLEEYSQNDPD-AYSYS-GALNRANQGLMEFVEMF----KAPI  247 (358)
T ss_pred             EEEEEECCCCCCCCCHHHHHH----H-------HHHHHHHHHCCCCCC-EECCC-CCEECCCCCCEEEHHHH----CCCH
T ss_conf             689996899987633778743----3-------209877410447984-24567-70000357755409876----1829


Q ss_pred             HHHHHHHHHHHCCCHH
Q ss_conf             7778888763013633
Q 537021.9.peg.4  234 NRIMDLFGYLIKGDII  249 (369)
Q Consensus       234 ~~i~~Ll~ai~~~d~~  249 (369)
                      +.+..|+.+.-.++.+
T Consensus       248 ~~L~~lL~atQE~~i~  263 (358)
T pfam08298       248 KVLHPLLTATQEGNYN  263 (358)
T ss_pred             HHHHHHHCCCCCCCCC
T ss_conf             9999985221246224


No 397
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=94.45  E-value=0.07  Score=34.02  Aligned_cols=20  Identities=20%  Similarity=0.162  Sum_probs=16.0

Q ss_pred             EHHCCCCCCCHHHHHHHHHH
Q ss_conf             20107879888899999999
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIAR   43 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~   43 (369)
                      .=++||+|+|||.++.-+|-
T Consensus        46 TEi~G~~gsGKTQlc~qlav   65 (261)
T pfam08423        46 TEVFGEFRTGKTQLCHTLCV   65 (261)
T ss_pred             EEEECCCCCCHHHHHHHHHH
T ss_conf             99989988878999999999


No 398
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369    GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=94.44  E-value=0.073  Score=33.85  Aligned_cols=109  Identities=16%  Similarity=0.275  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHCCCCCEE-EHHCCCCCCCHHHHHHHHHHHHC--------CCCCCCCCCCCCCCCCCHHH----HHHHC
Q ss_conf             8999999999982876706-20107879888899999999961--------46877788665878999779----99977
Q 537021.9.peg.4    5 KPMIKTLTNAFKSGRIAQS-YMLSGTRGIGKTTTARIIARSLN--------YKTAHIDVPTVEFEGFGEHC----QAIIR   71 (369)
Q Consensus         5 ~~~~~~l~~~~~~~~~~ha-~lf~G~~G~GK~~~a~~~A~~l~--------c~~~~~~~~~~~~c~~c~~c----~~i~~   71 (369)
                      ++..+.|.+.|.+   ||- .|.+||.|+||||+=.+==..||        ||+|-.+.  ++.=|+---=    -.|+.
T Consensus       231 ~~~l~~~~~li~r---pHGIiLVTGPTGSGKtTTLYaaL~~LN~~~~NIlTvEDPVEY~--i~GIgQ~Qvn~kIglTFA~  305 (495)
T TIGR02533       231 PELLSSLERLIKR---PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQ--IEGIGQIQVNPKIGLTFAA  305 (495)
T ss_pred             HHHHHHHHHHHHC---CCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCEEEE--ECCCCEEEECCCCCHHHHH
T ss_conf             8899999999718---8961884177898525889999986358997156865782476--2487636514654303888


Q ss_pred             C------CCCCCCCCCCCCCCCHHHHHHHH--HHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHH
Q ss_conf             9------87782224533223345556655--544565420465237751156648001678999997
Q 537021.9.peg.4   72 G------NHVDVVELDAASHTSIDDVREII--DQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLE  131 (369)
Q Consensus        72 ~------~~~d~~e~~~~s~~~id~ir~l~--~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lE  131 (369)
                      |      +=||++        -|-+||++-  +-+-+++.-|-   .++--.|  |.+||-|+=+.+.
T Consensus       306 GLRaILRQDPDii--------MvGEIRD~ETA~IAiQASLTGH---LVLSTLH--TNDAAgAvtRL~D  360 (495)
T TIGR02533       306 GLRAILRQDPDII--------MVGEIRDLETAQIAIQASLTGH---LVLSTLH--TNDAAGAVTRLID  360 (495)
T ss_pred             HHHHHHCCCCCEE--------EEECCCCHHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHH
T ss_conf             8788642799889--------9823160689999998764325---7655655--4015446655532


No 399
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=94.40  E-value=0.28  Score=29.57  Aligned_cols=46  Identities=26%  Similarity=0.395  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHC----CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf             999999999982----87670620107879888899999999961468777
Q 537021.9.peg.4    6 PMIKTLTNAFKS----GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHI   52 (369)
Q Consensus         6 ~~~~~l~~~~~~----~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~   52 (369)
                      ++...|.+....    .|-++ .-+.|..|+||||+.+.+|+.|.+.--+.
T Consensus       115 ~~~~~l~~~~~~~~~~~~~~r-IaLIGlmGaGKSTvGr~LA~~Lg~pFvDl  164 (304)
T PRK08154        115 RARDALSGMLGTGGGAARRPR-IALIGLRGAGKSTLGRMLAARLGVPFVEL  164 (304)
T ss_pred             HHHHHHHHHHCCCCCCCCCCC-EEEECCCCCCHHHHHHHHHHHHCCCEEEC
T ss_conf             999998763023766677784-79889999988899999999959897787


No 400
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.39  E-value=0.13  Score=32.08  Aligned_cols=21  Identities=24%  Similarity=0.465  Sum_probs=17.5

Q ss_pred             EEHHCCCCCCCHHHHHHHHHH
Q ss_conf             620107879888899999999
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIAR   43 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~   43 (369)
                      -+-+.||.|+||||+.++++-
T Consensus        37 ~v~iiG~sGsGKSTLl~~i~G   57 (233)
T PRK11629         37 MMAIVGSSGSGKSTLLHLLGG   57 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHC
T ss_conf             999999999409999999966


No 401
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.39  E-value=0.028  Score=36.99  Aligned_cols=27  Identities=30%  Similarity=0.497  Sum_probs=22.0

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             201078798888999999999614687
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLNYKTA   50 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~   50 (369)
                      .++-||||.||+|.|+.+|+.+.+.+-
T Consensus         3 iiilG~pGaGK~T~A~~La~~~~i~hl   29 (178)
T COG0563           3 ILILGPPGAGKSTLAKKLAKKLGLPHL   29 (178)
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCEE
T ss_conf             999899999889999999997699785


No 402
>pfam02367 UPF0079 Uncharacterized P-loop hydrolase UPF0079. This uncharacterized family contains a P-loop.
Probab=94.38  E-value=0.061  Score=34.44  Aligned_cols=95  Identities=23%  Similarity=0.299  Sum_probs=52.2

Q ss_pred             HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf             99999998287670620107879888899999999961468777886658789997799997798778222453322334
Q 537021.9.peg.4    9 KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSI   88 (369)
Q Consensus         9 ~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~i   88 (369)
                      +.|.+.+..|   ...+|.|+=|+|||+++|.++++|.+.. ....|+-..+..-+. .. ..-.|.|++.++.     .
T Consensus         6 ~~ia~~l~~G---~vi~L~G~LGaGKTtfvr~i~~~lg~~~-~V~SPTF~lv~~Y~~-~~-~~i~H~DlYRl~~-----~   74 (123)
T pfam02367         6 KRLAQLLKAG---DVVLLSGDLGAGKTTFVRGLAKGLGITG-NVTSPTFTLVNVYEP-GK-LPLYHYDLYRLED-----P   74 (123)
T ss_pred             HHHHHHCCCC---CEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCCCCEEEEEEECC-CC-CEEEEEEEECCCC-----H
T ss_conf             9999768999---7999988877889999999999859988-737995588999708-99-6399998332699-----7


Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECHHHC
Q ss_conf             555665554456542046523775115664
Q 537021.9.peg.4   89 DDVREIIDQIYYKPISARFRVYIMDEVQML  118 (369)
Q Consensus        89 d~ir~l~~~~~~~p~~~~~kv~iid~a~~m  118 (369)
                      +++-++-    +--+.....|++|+=++++
T Consensus        75 ~e~~~lg----~~e~~~~~~i~~IEWpe~~  100 (123)
T pfam02367        75 EELELLG----ILDYALEDGIILVEWPERL  100 (123)
T ss_pred             HHHHHCC----CHHHHCCCCEEEEECCHHH
T ss_conf             7898778----6566269989999992332


No 403
>pfam05872 DUF853 Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. One member from Brucella melitensis is thought to be an ATPase.
Probab=94.35  E-value=0.2  Score=30.56  Aligned_cols=91  Identities=24%  Similarity=0.250  Sum_probs=61.5

Q ss_pred             CCEEEEECHHHCCCCHHHHHHHHHHH-----CCCCCCEEEEECCCCCCCHHHHH----HHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             52377511566480016789999972-----12211146650675433035675----4333210245400135678764
Q 537021.9.peg.4  107 FRVYIMDEVQMLSTAAFNGLLKTLEE-----PPPHVKFIFATTEIRKIPITVLS----RCQRFDLHRISIGDLIELFTKI  177 (369)
Q Consensus       107 ~kv~iid~a~~m~~~a~NaLLK~lEE-----Pp~~~~fil~t~~~~~ll~TI~S----Rcq~~~f~~l~~~~i~~~L~~i  177 (369)
                      .=||++||||-+=.+|.-+||.-+|-     -...|=.+|+|.+|..||+++.+    |.|| .+|..++.+-+. ++..
T Consensus       258 KLVFFFDEAHLLF~dApkall~kIEqvVRLIRSKGVGVyFvTQnP~DiPd~VL~QLGnRVQH-ALRAfTP~DqKA-vk~a  335 (504)
T pfam05872       258 KLVFFFDEAHLLFNDAPKVLLEKVEQVVRLIRSKGVGVYFVTQNPLDLPDTVLAQLGNRVQH-ALRAFTPRDQKA-VKAA  335 (504)
T ss_pred             EEEEEECHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHH-HHHCCCHHHHHH-HHHH
T ss_conf             38999401666524785999999999998753067359997278764708899988778899-986388546999-9999


Q ss_pred             HHHCCCCCCHHHHHHHHHCCCC
Q ss_conf             3101345625664456531676
Q 537021.9.peg.4  178 LQEESIEFDPEAVAMIARASDG  199 (369)
Q Consensus       178 ~~~E~i~~d~~~l~~ia~~s~G  199 (369)
                      ++.-..+..-+..+.|..++-|
T Consensus       336 a~tfr~np~~d~~~~it~LgvG  357 (504)
T pfam05872       336 ADTFRPNPDFDTEEAITELGTG  357 (504)
T ss_pred             HHHCCCCCCCCHHHHHHHCCCC
T ss_conf             9857999766899998762765


No 404
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.35  E-value=0.03  Score=36.69  Aligned_cols=26  Identities=35%  Similarity=0.501  Sum_probs=22.1

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             20107879888899999999961468
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLNYKT   49 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~c~~   49 (369)
                      .+|.||||+||.|.|+.+|+.+++.+
T Consensus         3 iillG~PGsGKgTqa~~la~~~~~~~   28 (215)
T PRK00279          3 LILLGPPGAGKGTQAKFIAEKYGIPH   28 (215)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCEE
T ss_conf             99989999987999999999869917


No 405
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321   These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=94.34  E-value=0.036  Score=36.17  Aligned_cols=37  Identities=27%  Similarity=0.472  Sum_probs=23.1

Q ss_pred             HHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             999999828767062010787988889999999996146877
Q 537021.9.peg.4   10 TLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAH   51 (369)
Q Consensus        10 ~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~   51 (369)
                      .|+....+.+ + =.|++||.|+||+|+   +|.-+++=|..
T Consensus       118 v~~~~a~~~~-G-LiLVTGPTGSGKSTT---lAsmIDyIN~~  154 (350)
T TIGR01420       118 VLRELAERPR-G-LILVTGPTGSGKSTT---LASMIDYINKN  154 (350)
T ss_pred             HHHHHHHCCC-C-CEEEECCCCCCHHHH---HHHHHHHHHCC
T ss_conf             9999983669-9-389876889867899---99999787403


No 406
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos).  The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis.  Pentoses include xylose, arabinose, and ribose.  Important hexoses include glucose, galactose, and fructose.  In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains.  However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.32  E-value=0.11  Score=32.43  Aligned_cols=111  Identities=22%  Similarity=0.313  Sum_probs=53.4

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----CHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             6201078798888999999999614687778866587899----977999977987782224533223345556655544
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGF----GEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQI   98 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~----c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~   98 (369)
                      .+-+.||.|.||||+.++++-.+--..+..     ..+|+    .........|-. -+.++++.      +-    ..+
T Consensus        28 i~~lvG~nGaGKSTl~~~i~Gl~~p~~G~i-----~i~G~~i~~~~~~~~~~~gi~-~v~qLSgG------~~----Qrv   91 (163)
T cd03216          28 VHALLGENGAGKSTLMKILSGLYKPDSGEI-----LVDGKEVSFASPRDARRAGIA-MVYQLSVG------ER----QMV   91 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEE-----EECCEECCCCCHHHHHHCCCC-EECCCCHH------HH----HHH
T ss_conf             999998899899999999957768985789-----999999999999999987994-89469989------99----999


Q ss_pred             HH-HHHCCCCCEEEEECHH-HCCCCHHHHHHHHHHHCC-CCCCEEEEECCCCCC
Q ss_conf             56-5420465237751156-648001678999997212-211146650675433
Q 537021.9.peg.4   99 YY-KPISARFRVYIMDEVQ-MLSTAAFNGLLKTLEEPP-PHVKFIFATTEIRKI  149 (369)
Q Consensus        99 ~~-~p~~~~~kv~iid~a~-~m~~~a~NaLLK~lEEPp-~~~~fil~t~~~~~l  149 (369)
                      .+ +..-.+.+++|+||.- .+-..+...+++.+.+-. .++-++++|++.+-+
T Consensus        92 ~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~l~~~G~til~vtH~l~~~  145 (163)
T cd03216          92 EIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV  145 (163)
T ss_pred             HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf             999999729999999097557999999999999999987898999993849999


No 407
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.31  E-value=0.026  Score=37.13  Aligned_cols=46  Identities=33%  Similarity=0.434  Sum_probs=30.9

Q ss_pred             HHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             01078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4   25 MLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus        25 lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
                      -.+||||+||||.|+.+|..+....-          .....-|.+....-.++.|.
T Consensus         4 tIsG~pGsG~TTva~~lAe~~gl~~v----------saG~iFR~~A~e~gmsl~ef   49 (179)
T COG1102           4 TISGLPGSGKTTVARELAEHLGLKLV----------SAGTIFREMARERGMSLEEF   49 (179)
T ss_pred             EECCCCCCCCHHHHHHHHHHHCCCEE----------ECCHHHHHHHHHCCCCHHHH
T ss_conf             96179999702799999998297156----------21279999999839999999


No 408
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.30  E-value=0.08  Score=33.56  Aligned_cols=13  Identities=31%  Similarity=0.253  Sum_probs=5.5

Q ss_pred             CCHHHHHHHHHHH
Q ss_conf             0016789999972
Q 537021.9.peg.4  120 TAAFNGLLKTLEE  132 (369)
Q Consensus       120 ~~a~NaLLK~lEE  132 (369)
                      ..|..+..+++++
T Consensus       138 ~~a~~~a~~F~~~  150 (306)
T PRK08939        138 LDALMAALDFLEA  150 (306)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999997


No 409
>PRK04328 hypothetical protein; Provisional
Probab=94.30  E-value=0.035  Score=36.20  Aligned_cols=33  Identities=24%  Similarity=0.397  Sum_probs=23.9

Q ss_pred             HHHHHHCCCCC--EEEHHCCCCCCCHHHHHHHHHHH
Q ss_conf             99999828767--06201078798888999999999
Q 537021.9.peg.4   11 LTNAFKSGRIA--QSYMLSGTRGIGKTTTARIIARS   44 (369)
Q Consensus        11 l~~~~~~~~~~--ha~lf~G~~G~GK~~~a~~~A~~   44 (369)
                      |-..+. |-+|  ..+|.+||||+|||++|.-|+..
T Consensus        13 LD~lL~-GGlp~gs~~Lv~G~pGtGKT~la~qFl~~   47 (250)
T PRK04328         13 MDEILY-GGIPERNVVLLSGGPGTGKSIFSQQFLWN   47 (250)
T ss_pred             HHHHCC-CCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf             787515-99879969999828999989999999999


No 410
>pfam02572 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin adenosyltransferase, EC:2.5.1.17, involved in cobalamin (vitamin B12) biosynthesis. These enzymes catalyse the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.30  E-value=0.41  Score=28.35  Aligned_cols=118  Identities=18%  Similarity=0.191  Sum_probs=64.0

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCC-CCCC---CCCCCHHHHHHHCCCCCCCCCCC-C-----CCCC---CHH
Q ss_conf             62010787988889999999996146877788-6658---78999779999779877822245-3-----3223---345
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDV-PTVE---FEGFGEHCQAIIRGNHVDVVELD-A-----ASHT---SID   89 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~-~~~~---~c~~c~~c~~i~~~~~~d~~e~~-~-----~s~~---~id   89 (369)
                      -.+++|+ |=||||.|.-+|-.-......... .-.+   .+|.-...++     +|++.... +     .++.   .++
T Consensus         6 i~iytG~-GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~-----l~~v~~~~~g~gf~~~~~~~~~d~~   79 (172)
T pfam02572         6 LIVYTGN-GKGKSTAAFGMALRALGHGMRVGVVQFIKGKWETGEEAALEA-----LPEVEWHVMGEGFTWETQDRERDIA   79 (172)
T ss_pred             EEEEECC-CCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHH-----CCCCEEEECCCCCCCCCCCCHHHHH
T ss_conf             9999579-997188999999998259988999999538877638999987-----8996899788998587888788999


Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECHH-HCC--CCHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf             556655544565420465237751156-648--001678999997212211146650675
Q 537021.9.peg.4   90 DVREIIDQIYYKPISARFRVYIMDEVQ-MLS--TAAFNGLLKTLEEPPPHVKFIFATTEI  146 (369)
Q Consensus        90 ~ir~l~~~~~~~p~~~~~kv~iid~a~-~m~--~~a~NaLLK~lEEPp~~~~fil~t~~~  146 (369)
                      ..++..+.+.-.-.++.|-++|+||.- .++  -=.-..++.+|++-|+++=.||+..++
T Consensus        80 ~a~~~~~~a~~~l~~~~~dlvVLDEi~~ai~~gli~~~~v~~~l~~rp~~~evVlTGr~~  139 (172)
T pfam02572        80 AAREAWEKAKEALASGSYDLVVLDELNYALKYGYLDLEEVLELLRNRPEGQHVVLTGRGA  139 (172)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             999999999999758898999735579997559968999999998289987799989999


No 411
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.28  E-value=0.42  Score=28.26  Aligned_cols=29  Identities=31%  Similarity=0.470  Sum_probs=24.0

Q ss_pred             CCCCEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             87670620107879888899999999961
Q 537021.9.peg.4   18 GRIAQSYMLSGTRGIGKTTTARIIARSLN   46 (369)
Q Consensus        18 ~~~~ha~lf~G~~G~GK~~~a~~~A~~l~   46 (369)
                      ..-|+-+||.|-.|+||||+.=-+|+.+.
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~  164 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLAKYLK  164 (340)
T ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             89867999993488863717999999999


No 412
>PRK13542 consensus
Probab=94.26  E-value=0.18  Score=31.06  Aligned_cols=25  Identities=24%  Similarity=0.444  Sum_probs=19.8

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             7062010787988889999999996
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      +..+-+.||.|+||||+-+.++..+
T Consensus        44 Gei~~liGpNGaGKTTLlk~l~Gll   68 (224)
T PRK13542         44 GDLLQVMGPNGSGKTSLLRVLSGLM   68 (224)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             9799999999999999999995797


No 413
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129   Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK  resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=94.25  E-value=0.11  Score=32.62  Aligned_cols=41  Identities=22%  Similarity=0.326  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHH-CCCCCEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             4899999999998-28767062010787988889999999996
Q 537021.9.peg.4    4 QKPMIKTLTNAFK-SGRIAQSYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus         4 q~~~~~~l~~~~~-~~~~~ha~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      |+..++.|.+... .|| +|-.=|+|+||.||+|+--.|-+.|
T Consensus        21 ~~~a~~ll~~i~p~~Gn-A~~vG~TG~PGaGKSTl~~~l~~~l   62 (333)
T TIGR00750        21 RELAKELLERILPKTGN-AHVVGITGVPGAGKSTLVEKLIMEL   62 (333)
T ss_pred             HHHHHHHHHHHHHHCCC-CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             79999999986243279-0787664688885777999998999


No 414
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.25  E-value=0.033  Score=36.37  Aligned_cols=26  Identities=35%  Similarity=0.533  Sum_probs=22.3

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             20107879888899999999961468
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLNYKT   49 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~c~~   49 (369)
                      ++|.||||+||.|.|..+|+.++..+
T Consensus         3 iillGpPGsGKgT~a~~l~~~~~~~h   28 (225)
T PTZ00088          3 IVLFGAPGVGKGTFAEILSKKEKLKH   28 (225)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCEE
T ss_conf             99989999987999999999879906


No 415
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=94.25  E-value=0.22  Score=30.26  Aligned_cols=23  Identities=30%  Similarity=0.410  Sum_probs=18.5

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             62010787988889999999996
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      -.-+.||.|+||||+.++++.-+
T Consensus        29 ~~~liG~nGsGKSTll~~i~Gl~   51 (240)
T PRK09493         29 VVVIIGPSGSGKSTLLRCINKLE   51 (240)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCC
T ss_conf             99999999980999999996389


No 416
>PRK07261 topology modulation protein; Provisional
Probab=94.24  E-value=0.036  Score=36.11  Aligned_cols=28  Identities=32%  Similarity=0.496  Sum_probs=22.8

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             2010787988889999999996146877
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLNYKTAH   51 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~   51 (369)
                      .+..|++|+||+|+|+.+|+.++...-.
T Consensus         3 I~IiG~sGsGKSTlAr~L~~~~~ip~~~   30 (171)
T PRK07261          3 IAIIGYSGSGKSTLARFLGQHYNCPVLH   30 (171)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf             9998899986899999999987979797


No 417
>cd04154 Arl2 Arl2 subfamily.  Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity.  Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix.  The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI.  Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different.  In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport.  In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=94.23  E-value=0.55  Score=27.41  Aligned_cols=136  Identities=15%  Similarity=0.209  Sum_probs=62.2

Q ss_pred             HHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf             99999982876706201078798888999999999614687778866587899977999977987782224533223345
Q 537021.9.peg.4   10 TLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSID   89 (369)
Q Consensus        10 ~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id   89 (369)
                      .|++.-...|=.. .++.|++|+|||++.+.|.    ........|+....     ...+.-++ ..+.--|-+   |-+
T Consensus         4 ~~~~~~~~~~~~K-ililG~~~sGKTsll~~l~----~~~~~~~~pT~G~~-----~~~~~~~~-~~l~iwD~~---G~e   69 (173)
T cd04154           4 IIRKQKLKEREMR-ILILGLDNAGKTTILKKLL----GEDIDTISPTLGFQ-----IKTLEYEG-YKLNIWDVG---GQK   69 (173)
T ss_pred             HHHHHHCCCCCEE-EEEECCCCCCHHHHHHHHC----CCCCCCCCCCCCEE-----EEEEEECC-EEEEEEECC---CCC
T ss_conf             7766554457318-9999899978899999983----99989726705777-----89999899-999999668---860


Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECHHHCCC-CHHHHHHHHHHHC-CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             5566555445654204652377511566480-0167899999721-2211146650675433035675433321024540
Q 537021.9.peg.4   90 DVREIIDQIYYKPISARFRVYIMDEVQMLST-AAFNGLLKTLEEP-PPHVKFIFATTEIRKIPITVLSRCQRFDLHRISI  167 (369)
Q Consensus        90 ~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~-~a~NaLLK~lEEP-p~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~  167 (369)
                      ..|.+-.. .|+.  +.-=||++|-.+.-+- ++.+-|-+.+.+| ..++.++++++-.+. +            ..++.
T Consensus        70 ~~~~~~~~-y~~~--a~~ii~VvD~td~~~~~~~~~~l~~ll~~~~~~~~pili~~NK~Dl-~------------~~~~~  133 (173)
T cd04154          70 TLRPYWRN-YFES--TDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDL-P------------GALSE  133 (173)
T ss_pred             CCCHHHHH-HHCC--CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC-C------------CCCCH
T ss_conf             20058999-7226--6538999855657889999999999986354159847999876567-7------------78899


Q ss_pred             HHHHHHHH
Q ss_conf             01356787
Q 537021.9.peg.4  168 GDLIELFT  175 (369)
Q Consensus       168 ~~i~~~L~  175 (369)
                      ++|.+++.
T Consensus       134 ~ei~~~l~  141 (173)
T cd04154         134 EEIREALE  141 (173)
T ss_pred             HHHHHHHH
T ss_conf             99999986


No 418
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.22  E-value=0.063  Score=34.35  Aligned_cols=24  Identities=29%  Similarity=0.497  Sum_probs=19.0

Q ss_pred             EEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             062010787988889999999996
Q 537021.9.peg.4   22 QSYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        22 ha~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      .-+.+.||-|+||||+-++++-.+
T Consensus        27 ~i~~i~G~NGsGKSTLlk~i~Gl~   50 (195)
T PRK13541         27 AITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             799999999981999999996798


No 419
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=94.21  E-value=0.27  Score=29.69  Aligned_cols=58  Identities=16%  Similarity=0.091  Sum_probs=41.1

Q ss_pred             CEEEEECHHHCCCC-HHHHHHHHHHHCC--CCCCEEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             23775115664800-1678999997212--2111466506754330356754333210245
Q 537021.9.peg.4  108 RVYIMDEVQMLSTA-AFNGLLKTLEEPP--PHVKFIFATTEIRKIPITVLSRCQRFDLHRI  165 (369)
Q Consensus       108 kv~iid~a~~m~~~-a~NaLLK~lEEPp--~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l  165 (369)
                      -++|+||+|+|... ...++++++|==-  ...+.++++|-|..+-.-+.+++....-...
T Consensus       340 S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~  400 (733)
T COG1203         340 SLVILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVE  400 (733)
T ss_pred             CCEEEECHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCEECC
T ss_conf             6778742754165430899999999999689978999278997999999998503761213


No 420
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component.  The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.20  E-value=0.12  Score=32.37  Aligned_cols=28  Identities=36%  Similarity=0.519  Sum_probs=19.3

Q ss_pred             HHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             99828767062010787988889999999996
Q 537021.9.peg.4   14 AFKSGRIAQSYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        14 ~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      .+..| + .++  -||.|.||||+-++++-.+
T Consensus        22 ~i~~G-i-~gl--lGpNGAGKSTll~~i~Gl~   49 (211)
T cd03264          22 TLGPG-M-YGL--LGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             EECCC-E-EEE--ECCCCCHHHHHHHHHHCCC
T ss_conf             88897-5-999--9999823999999997596


No 421
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily.  Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project.  It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2).  This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=94.19  E-value=0.13  Score=32.11  Aligned_cols=121  Identities=17%  Similarity=0.330  Sum_probs=62.0

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             20107879888899999999961468777886658789997799997798-77822245332233455566555445654
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGN-HVDVVELDAASHTSIDDVREIIDQIYYKP  102 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~-~~d~~e~~~~s~~~id~ir~l~~~~~~~p  102 (369)
                      .|+-|..|.||||+...+..   -.......||..+.-     ..+..++ ...+.++     .|-+.+|.+-+.-. . 
T Consensus         2 IlilGLd~aGKTTil~~l~~---~~~~~~~~PT~Gf~~-----~~i~~~~~~l~~wDl-----gGq~~~R~~W~~Y~-~-   66 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSS---ERSLESVVPTTGFNS-----VAIPTQDAIMELLEI-----GGSQNLRKYWKRYL-S-   66 (164)
T ss_pred             EEEECCCCCCHHHHHHHHHC---CCCCCCCCCCCCCCE-----EEEEECCEEEEEEEC-----CCHHHHHHHHHHHH-H-
T ss_conf             99996799989999999816---998765356327746-----999989999999853-----75288865699871-1-


Q ss_pred             HCCCCCEEEEECHHHCC-CCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             20465237751156648-0016789999972122111466506754330356754333210245400135678
Q 537021.9.peg.4  103 ISARFRVYIMDEVQMLS-TAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELF  174 (369)
Q Consensus       103 ~~~~~kv~iid~a~~m~-~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L  174 (369)
                       ...-=||++|.+|.-+ .+|...|-+.+++|+ ++-+++.+ |-+.++            ..++.++|.+.|
T Consensus        67 -~~~gIIfVVDssD~~rl~eak~~L~~ll~~~~-~~PlLIla-NKqDl~------------~a~s~~ei~~~L  124 (164)
T cd04162          67 -GSQGLIFVVDSADSERLPLARQELHQLLQHPP-DLPLVVLA-NKQDLP------------AARSVQEIHKEL  124 (164)
T ss_pred             -CCCEEEEEEECCCHHHHHHHHHHHHHHHHCCC-CCEEEEEE-ECCCCC------------CCCCHHHHHHHC
T ss_conf             -77589999956888899999999999970879-98699998-632433------------699999999866


No 422
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters.  This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc.  The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor.  The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri.  Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.18  E-value=0.075  Score=33.77  Aligned_cols=23  Identities=30%  Similarity=0.407  Sum_probs=18.2

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             62010787988889999999996
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      -+-+-||.|+||||+.+.++..+
T Consensus        27 ~~~liGpNGaGKSTllk~i~Gl~   49 (213)
T cd03235          27 FLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             99999999986999999997687


No 423
>TIGR01351 adk adenylate kinases; InterPro: IPR006259    Most members of this family are known or believed to be adenylate kinase.   Adenylate kinase (ADK) 2.7.4.3 from EC converts ATP + AMP to ADP + ADP, that is, it uses ATP as a phosphate donor for AMP. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). However, some members accept other nucleotide triphosphates as donors, and may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (2.7.4.10 from EC) is Q9UIJ7 from SWISSPROT, a GTP:AMP phosphotransferase that has been identified in bovine heart and human cells  and derived from mitrochondrail GTP AMP that is specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate .This family is designated subfamily rather than equivalog for this reason.   ADK has also been identified in different bacterial species and in yeast . Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.  ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=94.14  E-value=0.034  Score=36.28  Aligned_cols=130  Identities=18%  Similarity=0.332  Sum_probs=71.5

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH-HHCCCCCCCC--C---CCCCCCCC-H-HHH-HHH
Q ss_conf             201078798888999999999614687778866587899977999-9779877822--2---45332233-4-555-665
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQA-IIRGNHVDVV--E---LDAASHTS-I-DDV-REI   94 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~-i~~~~~~d~~--e---~~~~s~~~-i-d~i-r~l   94 (369)
                      ++|-||||+||-|-|+.+|..+...+=.+.          +=-|. |..+++.-..  +   ||.   .+ | |+| -+|
T Consensus         2 ~~~lGpPGsGKGTQa~~i~~~~gl~HISTG----------DllR~~~~~~T~LG~~~k~y~y~~~---G~LVPD~~v~~l   68 (232)
T TIGR01351         2 LILLGPPGSGKGTQAKRIAEKLGLPHISTG----------DLLRAAVKAGTPLGKKAKEYNYMDK---GELVPDEIVNQL   68 (232)
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCH----------HHHHHHHHHCCHHHHHHHCCCCCCC---CCCCCHHHHHHH
T ss_conf             467559898766799999986088502025----------8999998707977898732672003---775778999999


Q ss_pred             H-HHHHHHHHCC---CCCEEEEECHHHCCCCHHHHHHHHHHHC--CCCCCEEEEECCCCCCCHHHHHH-----H---HHH
Q ss_conf             5-5445654204---6523775115664800167899999721--22111466506754330356754-----3---332
Q 537021.9.peg.4   95 I-DQIYYKPISA---RFRVYIMDEVQMLSTAAFNGLLKTLEEP--PPHVKFIFATTEIRKIPITVLSR-----C---QRF  160 (369)
Q Consensus        95 ~-~~~~~~p~~~---~~kv~iid~a~~m~~~a~NaLLK~lEEP--p~~~~fil~t~~~~~ll~TI~SR-----c---q~~  160 (369)
                      + +.+...+-.+   .-+=||+|..=+ |.+-|-||=++++|.  |-..+|-|-.++++-|..=|.+|     |   -++
T Consensus        69 v~~rl~~~~~~~~~~~~~GfILDGfPR-T~~QAeaL~~~l~~~g~~~d~V~~L~vp~~e~l~~R~~gR~~cp~cG~~Yh~  147 (232)
T TIGR01351        69 VKERLQQNPDCVSLKSENGFILDGFPR-TLSQAEALDAMLKELGLPIDAVIELDVPDLEELVERITGRRICPSCGRVYHI  147 (232)
T ss_pred             HHHHHHCCCCCEEEEECCCEEECCCCC-CHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf             999974560001101068626638888-7899999999998618984178885358799999977327330677855610


Q ss_pred             HCCCCCC
Q ss_conf             1024540
Q 537021.9.peg.4  161 DLHRISI  167 (369)
Q Consensus       161 ~f~~l~~  167 (369)
                      .|.|+..
T Consensus       148 ~f~pPk~  154 (232)
T TIGR01351       148 KFNPPKV  154 (232)
T ss_pred             CCCCCCC
T ss_conf             2278867


No 424
>PRK00625 shikimate kinase; Provisional
Probab=94.14  E-value=0.039  Score=35.85  Aligned_cols=30  Identities=27%  Similarity=0.388  Sum_probs=25.1

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf             201078798888999999999614687778
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLNYKTAHID   53 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~   53 (369)
                      ..|.|++|+||||+++.+|+.|++.--+.+
T Consensus         3 I~LIG~mGsGKStiGk~LA~~l~~~FvD~D   32 (173)
T PRK00625          3 IFLCGLPTVGKTSFGKALAKFLSLPFFDTD   32 (173)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEECH
T ss_conf             999899999889999999999399957749


No 425
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.14  E-value=0.032  Score=36.46  Aligned_cols=25  Identities=28%  Similarity=0.391  Sum_probs=19.9

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             7062010787988889999999996
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      ..+.|+.||+|+|||++|.-|+.+-
T Consensus       266 GsstLi~Gp~GtGKTtla~qFl~~~  290 (501)
T PRK09302        266 GSIILVSGATGTGKTLLVSKFAEAA  290 (501)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             9469998899988899999999999


No 426
>PRK06696 uridine kinase; Validated
Probab=94.13  E-value=0.099  Score=32.88  Aligned_cols=44  Identities=23%  Similarity=0.369  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHCCCCCEEE--HHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             89999999999828767062--010787988889999999996146
Q 537021.9.peg.4    5 KPMIKTLTNAFKSGRIAQSY--MLSGTRGIGKTTTARIIARSLNYK   48 (369)
Q Consensus         5 ~~~~~~l~~~~~~~~~~ha~--lf~G~~G~GK~~~a~~~A~~l~c~   48 (369)
                      .+.++.|...|.+-+..|-+  =+.|++|+||||+|..+|..|...
T Consensus         8 ~~~~~~~~~~i~~~~p~rpl~VgIdG~~gSGKTTlA~~La~~L~~~   53 (227)
T PRK06696          8 KQVVKEIANHILTLNLTRPLRVAIDGITASGKTTFANELAEEIKKR   53 (227)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             7899999999983599986899977899878799999999999746


No 427
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms.  SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes.  The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge.  SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=94.12  E-value=0.28  Score=29.52  Aligned_cols=41  Identities=20%  Similarity=0.325  Sum_probs=25.2

Q ss_pred             CEEEEECHHH-CCCCHHHHHHHHHHHCCC-CCCEEEEECCCCC
Q ss_conf             2377511566-480016789999972122-1114665067543
Q 537021.9.peg.4  108 RVYIMDEVQM-LSTAAFNGLLKTLEEPPP-HVKFIFATTEIRK  148 (369)
Q Consensus       108 kv~iid~a~~-m~~~a~NaLLK~lEEPp~-~~~fil~t~~~~~  148 (369)
                      -+||+||+|. |-..-...+...+.|-.. .+.||++|++..-
T Consensus       118 p~~iLDEvdAaLD~~N~~r~~~~i~el~~~~sQfIiITH~~~~  160 (178)
T cd03239         118 PFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEM  160 (178)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf             6699827655479889999999999997389989999868999


No 428
>KOG0923 consensus
Probab=94.10  E-value=0.19  Score=30.86  Aligned_cols=110  Identities=28%  Similarity=0.369  Sum_probs=52.4

Q ss_pred             HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCC-------CCCC---C
Q ss_conf             99999998287670620107879888899999999961468777886658789997799997798-------7782---2
Q 537021.9.peg.4    9 KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGN-------HVDV---V   78 (369)
Q Consensus         9 ~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~-------~~d~---~   78 (369)
                      ..|-.+|+.+   +.+++.|.+|+||||-   +-+.| .+.+....-..-.|-   .=|++++-+       -.++   +
T Consensus       271 dell~av~e~---QVLiI~GeTGSGKTTQ---iPQyL-~EaGytk~gk~IgcT---QPRRVAAmSVAaRVA~EMgvkLG~  340 (902)
T KOG0923         271 DELLKAVKEH---QVLIIVGETGSGKTTQ---IPQYL-YEAGYTKGGKKIGCT---QPRRVAAMSVAARVAEEMGVKLGH  340 (902)
T ss_pred             HHHHHHHHHC---CEEEEECCCCCCCCCC---CCHHH-HHCCCCCCCCEEEEC---CCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             9999999867---0899975788986445---62898-854213589467406---850688777999999985740143


Q ss_pred             CC-------CCCCCCCH-----H--HHHHHHHHHHHHHHCCCCCEEEEECHHH--CCCCHHHHHHHHHHH
Q ss_conf             24-------53322334-----5--5566555445654204652377511566--480016789999972
Q 537021.9.peg.4   79 EL-------DAASHTSI-----D--DVREIIDQIYYKPISARFRVYIMDEVQM--LSTAAFNGLLKTLEE  132 (369)
Q Consensus        79 e~-------~~~s~~~i-----d--~ir~l~~~~~~~p~~~~~kv~iid~a~~--m~~~a~NaLLK~lEE  132 (369)
                      |+       |..|...|     |  -+|+++.    -|--+.|-|+||||||-  ++++--=+|.|-+-.
T Consensus       341 eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~----epdLasYSViiiDEAHERTL~TDILfgLvKDIar  406 (902)
T KOG0923         341 EVGYSIRFEDCTSEKTVLKYMTDGMLLREFLS----EPDLASYSVIIVDEAHERTLHTDILFGLVKDIAR  406 (902)
T ss_pred             CCCEEEEECCCCCCCEEEEEECCHHHHHHHHC----CCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_conf             14448885035674122432243067998714----6342233599960243200345679998788875


No 429
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.09  E-value=0.5  Score=27.72  Aligned_cols=36  Identities=28%  Similarity=0.454  Sum_probs=25.0

Q ss_pred             HHHHHHHCCCCCE-EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             9999998287670-62010787988889999999996
Q 537021.9.peg.4   10 TLTNAFKSGRIAQ-SYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        10 ~l~~~~~~~~~~h-a~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      .|-+.+--|=+|. +.|+.|.||+||+|+-.-.|..+
T Consensus        81 EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~l  117 (456)
T COG1066          81 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARL  117 (456)
T ss_pred             HHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             8876536772366179973689877989999999998


No 430
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.08  E-value=0.17  Score=31.24  Aligned_cols=24  Identities=33%  Similarity=0.476  Sum_probs=19.0

Q ss_pred             EEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             062010787988889999999996
Q 537021.9.peg.4   22 QSYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        22 ha~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      .-+-+.||.|+||||+.++++-.+
T Consensus        28 e~~~l~G~NGaGKSTLl~~l~Gl~   51 (204)
T PRK13538         28 ELVQIEGPNGAGKTSLLRILAGLA   51 (204)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             899999999985999999997688


No 431
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds.  Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders.  The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis.  The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle.  The ABCA genes are not present in yeast.  However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.08  E-value=0.072  Score=33.91  Aligned_cols=23  Identities=39%  Similarity=0.609  Sum_probs=18.3

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             62010787988889999999996
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      -+-+.||.|+||||+.++++-.+
T Consensus        30 i~~llG~NGaGKSTLl~~i~Gl~   52 (220)
T cd03263          30 IFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             99999899973999999996698


No 432
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=94.05  E-value=0.046  Score=35.36  Aligned_cols=35  Identities=23%  Similarity=0.312  Sum_probs=28.6

Q ss_pred             CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             67062010787988889999999996146877788
Q 537021.9.peg.4   20 IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDV   54 (369)
Q Consensus        20 ~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~   54 (369)
                      .+-++++.||.++|||.+|..+|+.++++--..+.
T Consensus         2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DS   36 (308)
T COG0324           2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDS   36 (308)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCH
T ss_conf             96379998988757789999999982992893023


No 433
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=94.05  E-value=0.04  Score=35.82  Aligned_cols=29  Identities=31%  Similarity=0.344  Sum_probs=24.4

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             70620107879888899999999961468
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARSLNYKT   49 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~   49 (369)
                      +..+++.||.|+|||.+|..+|+.++++-
T Consensus         4 ~~ii~i~GpTasGKs~la~~la~~~~~eI   32 (304)
T PRK00091          4 PKLIVLVGPTASGKTALAIELAKRLNGEI   32 (304)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCEE
T ss_conf             97799989886589999999999879989


No 434
>cd03221 ABCF_EF-3 ABCF_EF-3  Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth.  EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site.  The reaction requires ATP hydrolysis.  EF-3 contains two ATP nucleotide binding sequence (NBS) motifs.  NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.03  E-value=0.066  Score=34.18  Aligned_cols=102  Identities=22%  Similarity=0.241  Sum_probs=52.3

Q ss_pred             EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             06201078798888999999999614687778866587899977999977987782224533223345556655544565
Q 537021.9.peg.4   22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYK  101 (369)
Q Consensus        22 ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~  101 (369)
                      ..+-+.||.|+||||+.++++-.+.    ..       .|+..    +....  .+-.++--|  +=.+-|-.+    -+
T Consensus        27 e~~~l~G~NGsGKTTl~~~l~G~~~----~~-------~G~i~----~~~~~--~i~y~~QLS--gGqkqr~~l----a~   83 (144)
T cd03221          27 DRIGLVGRNGAGKSTLLKLIAGELE----PD-------EGIVT----WGSTV--KIGYFEQLS--GGEKMRLAL----AK   83 (144)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC----CC-------CEEEE----ECCCC--EEEEEHHCC--HHHHHHHHH----HH
T ss_conf             9999998999849999999848988----98-------50999----99960--899870079--999999999----99


Q ss_pred             HHCCCCCEEEEECHH-HCCCCHHHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf             420465237751156-64800167899999721221114665067543
Q 537021.9.peg.4  102 PISARFRVYIMDEVQ-MLSTAAFNGLLKTLEEPPPHVKFIFATTEIRK  148 (369)
Q Consensus       102 p~~~~~kv~iid~a~-~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~  148 (369)
                      ..-.+.+|+|+||.- .+-..+...+.+.|.|.. . .+|++|++.+-
T Consensus        84 al~~~p~iliLDEPt~~LD~~~~~~i~~~l~~~~-~-tii~vsHd~~~  129 (144)
T cd03221          84 LLLENPNLLLLDEPTNHLDLESIEALEEALKEYP-G-TVILVSHDRYF  129 (144)
T ss_pred             HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC-C-EEEEEECCHHH
T ss_conf             9725998999957755589999999999999709-9-99999679899


No 435
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.98  E-value=0.45  Score=28.03  Aligned_cols=141  Identities=13%  Similarity=0.105  Sum_probs=70.1

Q ss_pred             CCCCEE--EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH-HHHHHCCCCC----------CCCCCCCC-
Q ss_conf             876706--201078798888999999999614687778866587899977-9999779877----------82224533-
Q 537021.9.peg.4   18 GRIAQS--YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEH-CQAIIRGNHV----------DVVELDAA-   83 (369)
Q Consensus        18 ~~~~ha--~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~-c~~i~~~~~~----------d~~e~~~~-   83 (369)
                      |-+|+.  .|..|+.|+||+.+-..|+.-+ |.++.....+. .-.+-.. -+++.+-+++          .+++++.. 
T Consensus        23 GGiP~GsL~lIEGd~~tGKSvLsqr~~YG~-L~~g~~v~yvs-Te~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~  100 (235)
T COG2874          23 GGIPVGSLILIEGDNGTGKSVLSQRFAYGF-LMNGYRVTYVS-TELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEP  100 (235)
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHH-HHCCCEEEEEE-ECHHHHHHHHHHHHCCCCCHHHHHCCEEEEEEECCCC
T ss_conf             997467699998889854889999999988-70895489998-4035999999888638871687750626899932454


Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC-CCHHHHHHHHHHHC---CCCCCEEEEECCCCCCC----HHHHH
Q ss_conf             223345556655544565420465237751156648-00167899999721---22111466506754330----35675
Q 537021.9.peg.4   84 SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS-TAAFNGLLKTLEEP---PPHVKFIFATTEIRKIP----ITVLS  155 (369)
Q Consensus        84 s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~-~~a~NaLLK~lEEP---p~~~~fil~t~~~~~ll----~TI~S  155 (369)
                      .+-+-.+.|.+++.+.-..-.-++-|+|||.-.... .+..++.|-+|+.-   .+.-..|++|-+|+.+.    --|+|
T Consensus       101 ~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp~~l~e~~~~rirs  180 (235)
T COG2874         101 VNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHPSALDEDVLTRIRS  180 (235)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHCCHHHHHHHHH
T ss_conf             22573778999999975577523778999534377652649999999999999872897899994734337899999987


Q ss_pred             HHHHH
Q ss_conf             43332
Q 537021.9.peg.4  156 RCQRF  160 (369)
Q Consensus       156 Rcq~~  160 (369)
                      =|-.+
T Consensus       181 ~~d~~  185 (235)
T COG2874         181 ACDVY  185 (235)
T ss_pred             HHHEE
T ss_conf             52025


No 436
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker  B motif (motif II). This domain contains the ATP- binding region.
Probab=93.97  E-value=0.61  Score=27.06  Aligned_cols=15  Identities=27%  Similarity=0.364  Sum_probs=12.2

Q ss_pred             EEHHCCCCCCCHHHH
Q ss_conf             620107879888899
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTT   37 (369)
Q Consensus        23 a~lf~G~~G~GK~~~   37 (369)
                      -.+...|.|+|||.+
T Consensus        38 dvi~~a~TGSGKTla   52 (203)
T cd00268          38 DVIGQAQTGSGKTAA   52 (203)
T ss_pred             CEEEECCCCCCCHHH
T ss_conf             889975799722288


No 437
>pfam02374 ArsA_ATPase Anion-transporting ATPase. This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.
Probab=93.97  E-value=0.055  Score=34.75  Aligned_cols=22  Identities=36%  Similarity=0.534  Sum_probs=18.8

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             2010787988889999999996
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      ++|+|.-|+||||+|=++|..+
T Consensus         4 i~~~GKGGVGKTT~AaA~A~~~   25 (304)
T pfam02374         4 IFFGGKGGVGKTTVSCATAVRL   25 (304)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
T ss_conf             9995798574899999999999


No 438
>KOG3347 consensus
Probab=93.96  E-value=0.039  Score=35.87  Aligned_cols=28  Identities=29%  Similarity=0.433  Sum_probs=23.1

Q ss_pred             CCCEEEHHCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             76706201078798888999999999614
Q 537021.9.peg.4   19 RIAQSYMLSGTRGIGKTTTARIIARSLNY   47 (369)
Q Consensus        19 ~~~ha~lf~G~~G~GK~~~a~~~A~~l~c   47 (369)
                      ..|. .|.+|.||+||+|+|..+|.....
T Consensus         6 ~~PN-ILvtGTPG~GKstl~~~lae~~~~   33 (176)
T KOG3347           6 ERPN-ILVTGTPGTGKSTLAERLAEKTGL   33 (176)
T ss_pred             CCCC-EEEECCCCCCCHHHHHHHHHHHCC
T ss_conf             3788-798679998802599999997398


No 439
>pfam05970 DUF889 PIF1 helicase. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated.
Probab=93.95  E-value=0.097  Score=32.94  Aligned_cols=46  Identities=24%  Similarity=0.329  Sum_probs=29.9

Q ss_pred             CCCEEEEECHHHCCCCHHHHHHHHHH--------HCCCCCCEEEEECCCCCCCHH
Q ss_conf             65237751156648001678999997--------212211146650675433035
Q 537021.9.peg.4  106 RFRVYIMDEVQMLSTAAFNGLLKTLE--------EPPPHVKFIFATTEIRKIPIT  152 (369)
Q Consensus       106 ~~kv~iid~a~~m~~~a~NaLLK~lE--------EPp~~~~fil~t~~~~~ll~T  152 (369)
                      +-+++||||+-|++..-+.++-+.+-        +|=.++-.|| +=+.-+|||-
T Consensus        74 ~~~vLIIDEiSMv~~~lfd~id~~lr~i~~~~~~~PFGGiqvIl-~GDf~QLPPV  127 (418)
T pfam05970        74 KASLIIWDEAPMTHRHCFEALDRTLRDILKNTDDKPFGGKTVVL-GGDFRQILPV  127 (418)
T ss_pred             HCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE-ECCHHHCCCC
T ss_conf             08799985411357899999999999987127876779747998-2447655875


No 440
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.92  E-value=0.041  Score=35.73  Aligned_cols=25  Identities=32%  Similarity=0.480  Sum_probs=22.0

Q ss_pred             HHCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             0107879888899999999961468
Q 537021.9.peg.4   25 MLSGTRGIGKTTTARIIARSLNYKT   49 (369)
Q Consensus        25 lf~G~~G~GK~~~a~~~A~~l~c~~   49 (369)
                      +++|.||.||||+||.|...+-++.
T Consensus         3 VLcGLPaAGKTTLar~L~~~l~~~~   27 (340)
T TIGR03575         3 VLCGLPAAGKSTLARSLSATLRRER   27 (340)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             4326987873689999999986444


No 441
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.92  E-value=0.23  Score=30.17  Aligned_cols=46  Identities=15%  Similarity=0.206  Sum_probs=29.3

Q ss_pred             HCCCCCEEEEECH-HHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf             2046523775115-664800167899999721221114665067543
Q 537021.9.peg.4  103 ISARFRVYIMDEV-QMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRK  148 (369)
Q Consensus       103 ~~~~~kv~iid~a-~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~  148 (369)
                      .-++.+|+|+||. -.|-+.+...+...+.+-.....+|++|++.+-
T Consensus       148 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~~TillssH~l~e  194 (301)
T TIGR03522       148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQE  194 (301)
T ss_pred             HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf             70799899994886678989999999999987599999998785899


No 442
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer,  which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.90  E-value=0.56  Score=27.33  Aligned_cols=118  Identities=18%  Similarity=0.171  Sum_probs=63.3

Q ss_pred             EHHCCCCCCCHHHHHHHHH-HHHCCCCCCCCCCCCC---CCCCCHHHHHHHCCCCCCCCCCC-C-----CCCC---CHHH
Q ss_conf             2010787988889999999-9961468777886658---78999779999779877822245-3-----3223---3455
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIA-RSLNYKTAHIDVPTVE---FEGFGEHCQAIIRGNHVDVVELD-A-----ASHT---SIDD   90 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A-~~l~c~~~~~~~~~~~---~c~~c~~c~~i~~~~~~d~~e~~-~-----~s~~---~id~   90 (369)
                      .+++|+ |=||||.|.-+| +++-..-.-.-..-.+   .+|.-..+++     +|++.... +     .++.   -+..
T Consensus         6 ~vytG~-GKGKTTAAlG~alRA~G~G~rV~ivQFlKg~~~~GE~~~l~~-----l~~i~~~~~g~~~~~~~~~~~~~~~~   79 (159)
T cd00561           6 QVYTGN-GKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALER-----LPNIEIHRMGRGFFWTTENDEEDIAA   79 (159)
T ss_pred             EEEECC-CCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHH-----CCCCEEEECCCCCCCCCCCCHHHHHH
T ss_conf             999579-997089999999998449998999998158987559999984-----89968998899973227987999999


Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEECHHH-C--CCCHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf             566555445654204652377511566-4--80016789999972122111466506754
Q 537021.9.peg.4   91 VREIIDQIYYKPISARFRVYIMDEVQM-L--STAAFNGLLKTLEEPPPHVKFIFATTEIR  147 (369)
Q Consensus        91 ir~l~~~~~~~p~~~~~kv~iid~a~~-m--~~~a~NaLLK~lEEPp~~~~fil~t~~~~  147 (369)
                      .++..+.+.-.-.++.|-++|+||+-. +  .-=....++++|++-|+++=.||+..++.
T Consensus        80 a~~~~~~a~~~l~~~~~dlvVLDEi~~a~~~gli~~~~v~~~l~~rp~~~evVlTGr~~p  139 (159)
T cd00561          80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP  139 (159)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf             999999999998688989997366899998599179999999984899978999699999


No 443
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=93.88  E-value=0.47  Score=27.92  Aligned_cols=114  Identities=18%  Similarity=0.148  Sum_probs=61.6

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf             78798888999999999614687778866587899977999977987782224533223345556655544565420465
Q 537021.9.peg.4   28 GTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARF  107 (369)
Q Consensus        28 G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~  107 (369)
                      |..|+||+|++..+|..|-|.--..+.     --.-.+-.+|.+|.-.+=       +-.......+.+.+... .+++.
T Consensus         2 GVsG~GKStvg~~lA~~lg~~fidGDd-----lHp~aNi~KM~~GiPL~D-------dDR~pWL~~l~~~~~~~-~~~~~   68 (161)
T COG3265           2 GVSGSGKSTVGSALAERLGAKFIDGDD-----LHPPANIEKMSAGIPLND-------DDRWPWLEALGDAAASL-AQKNK   68 (161)
T ss_pred             CCCCCCHHHHHHHHHHHCCCCEECCCC-----CCCHHHHHHHHCCCCCCC-------CHHHHHHHHHHHHHHHH-HCCCC
T ss_conf             877657779999999980982333565-----699889998727998984-------11247999999999986-42798


Q ss_pred             CEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             23775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4  108 RVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF  160 (369)
Q Consensus       108 kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~  160 (369)
                      .++|.-.|=+  +    .-+-.|-+.-+++.||...-..+-++.-..+|--||
T Consensus        69 ~~vi~CSALK--r----~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHF  115 (161)
T COG3265          69 HVVIACSALK--R----SYRDLLREANPGLRFVYLDGDFDLILERMKARKGHF  115 (161)
T ss_pred             CEEEECHHHH--H----HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCC
T ss_conf             1699627887--8----899998545997389996388999999987605677


No 444
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.86  E-value=0.032  Score=36.48  Aligned_cols=20  Identities=45%  Similarity=0.494  Sum_probs=17.3

Q ss_pred             HHCCCCCCCHHHHHHHHHHH
Q ss_conf             01078798888999999999
Q 537021.9.peg.4   25 MLSGTRGIGKTTTARIIARS   44 (369)
Q Consensus        25 lf~G~~G~GK~~~a~~~A~~   44 (369)
                      |++||||+|||++|.-|+..
T Consensus         3 Li~G~pGsGKT~~a~qfl~~   22 (187)
T cd01124           3 LLSGGPGTGKTTFALQFLYA   22 (187)
T ss_pred             EEEECCCCCHHHHHHHHHHH
T ss_conf             58768999999999999999


No 445
>PRK00023 cmk cytidylate kinase; Provisional
Probab=93.83  E-value=0.045  Score=35.41  Aligned_cols=27  Identities=33%  Similarity=0.608  Sum_probs=22.3

Q ss_pred             HHCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             010787988889999999996146877
Q 537021.9.peg.4   25 MLSGTRGIGKTTTARIIARSLNYKTAH   51 (369)
Q Consensus        25 lf~G~~G~GK~~~a~~~A~~l~c~~~~   51 (369)
                      =+-||.|+||+|+|+.+|+.|+...-.
T Consensus         8 aIDGpagSGKST~ak~lA~~L~~~yld   34 (225)
T PRK00023          8 AIDGPAGSGKGTVAKILAKKLGFHYLD   34 (225)
T ss_pred             EEECCCCCCHHHHHHHHHHHHCCCEEC
T ss_conf             965898678789999999993988764


No 446
>PRK05541 adenylylsulfate kinase; Provisional
Probab=93.75  E-value=0.059  Score=34.57  Aligned_cols=28  Identities=29%  Similarity=0.373  Sum_probs=23.4

Q ss_pred             CCEEEHHCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             6706201078798888999999999614
Q 537021.9.peg.4   20 IAQSYMLSGTRGIGKTTTARIIARSLNY   47 (369)
Q Consensus        20 ~~ha~lf~G~~G~GK~~~a~~~A~~l~c   47 (369)
                      =+.-+.|+|.+|+||||+|+.+.+.|..
T Consensus         6 kg~viW~TGLsGSGKTTiA~~l~~~L~~   33 (176)
T PRK05541          6 NGYVIWITGLAGSGKTTIAKALYERLKL   33 (176)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             8679997899999899999999999997


No 447
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.74  E-value=0.11  Score=32.63  Aligned_cols=37  Identities=24%  Similarity=0.381  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             9999999999828767062010787988889999999996
Q 537021.9.peg.4    6 PMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus         6 ~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      .....|+.+++.++   ..+++|+.|+||||+.+++..++
T Consensus       137 ~~a~~L~~~V~~r~---nilI~G~TgsGKTTll~all~~i  173 (320)
T PRK13894        137 EQREAIIAAVRAHR---NILVIGGTGSGKTTLVNAIINEM  173 (320)
T ss_pred             HHHHHHHHHHHCCC---CEEEECCCCCCHHHHHHHHHHHH
T ss_conf             99999999997287---58998588865689999998632


No 448
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane.  The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.74  E-value=0.17  Score=31.21  Aligned_cols=22  Identities=32%  Similarity=0.523  Sum_probs=17.6

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHH
Q ss_conf             6201078798888999999999
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARS   44 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~   44 (369)
                      -..+.||.|+||+|+.++++..
T Consensus        29 ~v~i~GpSGsGKSTLl~~i~gl   50 (214)
T cd03292          29 FVFLVGPSGAGKSTLLKLIYKE   50 (214)
T ss_pred             EEEEECCCCCHHHHHHHHHHCC
T ss_conf             9999979995399999999629


No 449
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.72  E-value=0.11  Score=32.49  Aligned_cols=109  Identities=23%  Similarity=0.260  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf             99999999998287670620107879888899999999961468777886658--7899977999977987782224533
Q 537021.9.peg.4    6 PMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVE--FEGFGEHCQAIIRGNHVDVVELDAA   83 (369)
Q Consensus         6 ~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~--~c~~c~~c~~i~~~~~~d~~e~~~~   83 (369)
                      ...+.|+.+++.++   ..+++|+.|+||||+.+++...+-...+..-..+++  +.-.|         .|++++.+...
T Consensus       132 ~~~~~L~~aV~~r~---nilVsGgTGSGKTTllnaL~~~i~~~~p~eRivtIEDt~EL~~---------~~~n~v~l~~~  199 (323)
T PRK13833        132 AQASTIRSAISSRL---NIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQC---------AAENAVLLHTS  199 (323)
T ss_pred             HHHHHHHHHHHCCC---CEEEECCCCCCHHHHHHHHHHHHCCCCCHHEEEEECCCCCCCC---------CCCCEEEEECC
T ss_conf             99999999998189---6899917777568999999986402893233999457501146---------78877787516


Q ss_pred             CCCCHHHHHHHHH-HHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCC
Q ss_conf             2233455566555-44565420465237751156648001678999997212211
Q 537021.9.peg.4   84 SHTSIDDVREIID-QIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHV  137 (369)
Q Consensus        84 s~~~id~ir~l~~-~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~  137 (369)
                      .  .|+ +++|++ .++++|-     -+|+-|+-   -..+-.+|+.+---.++.
T Consensus       200 ~--~v~-~~~Ll~~aLRmrPD-----RIivGEvR---G~EA~~~L~A~nTGH~Gs  243 (323)
T PRK13833        200 D--TVD-MARLLKSTMRLRPD-----RIIVGEVR---DGAALTLLKAWNTGHPGG  243 (323)
T ss_pred             C--CCC-HHHHHHHHHCCCCC-----EEEEECCC---CHHHHHHHHHHHCCCCCC
T ss_conf             9--869-99999997446997-----58883006---599999999982799986


No 450
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.71  E-value=0.1  Score=32.72  Aligned_cols=23  Identities=39%  Similarity=0.364  Sum_probs=18.4

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             62010787988889999999996
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      -.-+.||.|+||||+.+++|--.
T Consensus        28 ~~~ivGpSG~GKSTllr~i~Gl~   50 (178)
T cd03229          28 IVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCC
T ss_conf             99999999983999999998599


No 451
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.64  E-value=0.32  Score=29.17  Aligned_cols=24  Identities=25%  Similarity=0.313  Sum_probs=18.7

Q ss_pred             EEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             062010787988889999999996
Q 537021.9.peg.4   22 QSYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        22 ha~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      ..+-+.||.|+||||+++.++.-+
T Consensus        21 e~vaiiG~sGsGKSTLl~~l~GLl   44 (276)
T PRK13634         21 SYVAIIGHTGSGKSTLLQHLNGLL   44 (276)
T ss_pred             CEEEEECCCCCHHHHHHHHHHCCC
T ss_conf             899999999969999999997499


No 452
>PRK07263 consensus
Probab=93.63  E-value=0.21  Score=30.52  Aligned_cols=25  Identities=28%  Similarity=0.356  Sum_probs=18.6

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             7062010787988889999999996
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      ++-+++.|.||.|||++|.-+|...
T Consensus       203 GdLiviaaRPsmGKTa~alnia~~i  227 (453)
T PRK07263        203 DQLIILAARPAVGKTAFVLNIAQNV  227 (453)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             8689997278884789999999999


No 453
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system.  Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond.  Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond.  Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.62  E-value=0.17  Score=31.07  Aligned_cols=22  Identities=32%  Similarity=0.437  Sum_probs=17.4

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             2010787988889999999996
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      .-+.||.|+||||+.+.++..+
T Consensus        30 ~~iiGpsGsGKSTLl~~i~gl~   51 (241)
T cd03256          30 VALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             EEEECCCCCHHHHHHHHHHCCC
T ss_conf             9999999833999999997499


No 454
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=93.59  E-value=0.17  Score=31.21  Aligned_cols=25  Identities=32%  Similarity=0.481  Sum_probs=21.6

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             2010787988889999999996146
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLNYK   48 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~c~   48 (369)
                      .-..|+.|+||||+|+.+...+.++
T Consensus        11 IgIaG~SgSGKTTv~~~l~~~~~~~   35 (218)
T COG0572          11 IGIAGGSGSGKTTVAKELSEQLGVE   35 (218)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             9986798778899999999982867


No 455
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.58  E-value=0.71  Score=26.58  Aligned_cols=102  Identities=23%  Similarity=0.310  Sum_probs=51.4

Q ss_pred             HHHHHHHHH-CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCC-CCCCCCCC-------CCHHHHHHHCCCCCCCC
Q ss_conf             999999998-2876706201078798888999999999614687778-86658789-------99779999779877822
Q 537021.9.peg.4    8 IKTLTNAFK-SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHID-VPTVEFEG-------FGEHCQAIIRGNHVDVV   78 (369)
Q Consensus         8 ~~~l~~~~~-~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~-~~~~~~c~-------~c~~c~~i~~~~~~d~~   78 (369)
                      .+.|+.... .|+ +|-.=++|+||+||+|+.-.|.+.| ++.+.-. ...++|..       -.+.-|+-...+||+++
T Consensus        38 ~~ll~~l~p~tG~-a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vF  115 (323)
T COG1703          38 RELLRALYPRTGN-AHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVF  115 (323)
T ss_pred             HHHHHHHHHCCCC-CCEEEECCCCCCCHHHHHHHHHHHH-HHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEE
T ss_conf             9999997311799-8378731799886688999999999-9779678999988999987853012076677644699817


Q ss_pred             CCCCCCC---CCH-HHHHHHHHHHHHHHHCCCCCEEEEECH
Q ss_conf             2453322---334-555665554456542046523775115
Q 537021.9.peg.4   79 ELDAASH---TSI-DDVREIIDQIYYKPISARFRVYIMDEV  115 (369)
Q Consensus        79 e~~~~s~---~~i-d~ir~l~~~~~~~p~~~~~kv~iid~a  115 (369)
                      --.-+|.   .|+ ...|+.+.-+-    -++|-++||+-+
T Consensus       116 iRs~~srG~lGGlS~at~~~i~~ld----AaG~DvIIVETV  152 (323)
T COG1703         116 IRSSPSRGTLGGLSRATREAIKLLD----AAGYDVIIVETV  152 (323)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHH----HCCCCEEEEEEC
T ss_conf             8426877651016688999999998----618988999814


No 456
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.57  E-value=0.13  Score=31.90  Aligned_cols=23  Identities=30%  Similarity=0.484  Sum_probs=18.5

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             62010787988889999999996
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      -+-+.||.|+||||+.++++-.+
T Consensus        32 i~~LiGpNGaGKSTLlk~I~Gl~   54 (251)
T PRK09544         32 ILTLLGPNGAGKSTLVRVVLGLV   54 (251)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             99999899988999999996688


No 457
>PRK13766 Hef nuclease; Provisional
Probab=93.56  E-value=0.48  Score=27.83  Aligned_cols=159  Identities=15%  Similarity=0.130  Sum_probs=77.6

Q ss_pred             HHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCC-C--CCCCCCCC-CCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf             9999999982876706201078798888999999999614687-7--78866587-899977999977987782224533
Q 537021.9.peg.4    8 IKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTA-H--IDVPTVEF-EGFGEHCQAIIRGNHVDVVELDAA   83 (369)
Q Consensus         8 ~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~-~--~~~~~~~~-c~~c~~c~~i~~~~~~d~~e~~~~   83 (369)
                      .+.+.+++..|     -|.+=|.|.|||..|..++...+-..+ .  .-.|+... -.++..|+.+.....-++..+.|.
T Consensus        21 ~el~~~Al~~N-----tiVvLPTG~GKT~IA~lvi~~~l~~~~gKilFLaPT~pLV~Qq~~~~~~~l~i~~~~i~~ltG~   95 (764)
T PRK13766         21 QLLAAKALKGN-----TLVVLPTGLGKTAIALLVIAERLQKYGGKVLILAPTKPLVEQHAEFFRKFLNIDPEKIVVLTGE   95 (764)
T ss_pred             HHHHHHHHHCC-----EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf             99999998589-----8999599866899999999999974898899985888899999999999709995528999888


Q ss_pred             CCCCHHHHH--------------HHHHHH---HHHHHCCCCCEEEEECHHHCCCCH-HHHHHHHHHHCCCCCCEEEEECC
Q ss_conf             223345556--------------655544---565420465237751156648001-67899999721221114665067
Q 537021.9.peg.4   84 SHTSIDDVR--------------EIIDQI---YYKPISARFRVYIMDEVQMLSTAA-FNGLLKTLEEPPPHVKFIFATTE  145 (369)
Q Consensus        84 s~~~id~ir--------------~l~~~~---~~~p~~~~~kv~iid~a~~m~~~a-~NaLLK~lEEPp~~~~fil~t~~  145 (369)
                        .+.++-.              -+...+   .+.  -.+...+|+||||..+.+. -+-+.+-.-+...+-.++-.|.+
T Consensus        96 --~~~~~r~~~w~~~~Viv~TPQvl~ndL~~g~i~--l~dv~lLVfDEaHha~Gnh~Y~~I~~~y~~~~~~PrILGLTAS  171 (764)
T PRK13766         96 --ISPEKRAALWEKAKVIVATPQVIENDLLAGRIS--LEDVSLLIFDEAHRAVGNYAYVFIAERYHEDAKNPLVLGLTAS  171 (764)
T ss_pred             --CCHHHHHHHHCCCCEEEECCHHHHHHHHHCCCC--HHHCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCC
T ss_conf             --782768998607999999908999999829867--8882289997466666776289999999853778558850368


Q ss_pred             CCCCCHHHHHHHHHHHC-----CCCCCHHHHHHHH
Q ss_conf             54330356754333210-----2454001356787
Q 537021.9.peg.4  146 IRKIPITVLSRCQRFDL-----HRISIGDLIELFT  175 (369)
Q Consensus       146 ~~~ll~TI~SRcq~~~f-----~~l~~~~i~~~L~  175 (369)
                      |..-..-|.--|.-+..     +.-+..++..|+.
T Consensus       172 PGs~~e~I~ev~~nL~i~~ie~rte~d~dv~~yv~  206 (764)
T PRK13766        172 PGSDEEKIKEVCENLGIEHVEVKTEDDPDVRPYVH  206 (764)
T ss_pred             CCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHCC
T ss_conf             87644899999986598728961444434454335


No 458
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=93.56  E-value=0.13  Score=31.96  Aligned_cols=55  Identities=18%  Similarity=0.149  Sum_probs=33.4

Q ss_pred             CCCCEEEEECHH-HCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf             465237751156-6480016789999972122111466506754330356754333210
Q 537021.9.peg.4  105 ARFRVYIMDEVQ-MLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDL  162 (369)
Q Consensus       105 ~~~kv~iid~a~-~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f  162 (369)
                      .+..|+|+||-- .|-..+..-|...|.+.+.  -+|+++++..- +..+-.|+-.+.-
T Consensus       173 ~~PdlLlLDEPTn~LD~~~~~~L~~~L~~~~g--tvliISHDr~f-L~~v~dri~~l~~  228 (632)
T PRK11147        173 SNPDVLLLDEPTNHLDIETIEWLEGFLKTFQG--SIIFISHDRSF-IRNMATRIVDLDR  228 (632)
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC--EEEEEECCHHH-HHHHCCCCEECCC
T ss_conf             89999998488765899999999999997598--49999756899-8752450000149


No 459
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea.  Only very few species lack representatives of the siderophore family transporters.  The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake.  The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA.  The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme.  A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.51  E-value=0.082  Score=33.49  Aligned_cols=23  Identities=30%  Similarity=0.387  Sum_probs=18.7

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             62010787988889999999996
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      .+-+.||.|+||||+.++++..+
T Consensus        27 ~~~liG~nGsGKTTLl~~i~G~~   49 (180)
T cd03214          27 IVGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             99999899988999999995798


No 460
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily.  Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases.  Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS).  Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions.  Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=93.47  E-value=0.34  Score=28.97  Aligned_cols=123  Identities=20%  Similarity=0.206  Sum_probs=64.5

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             20107879888899999999961468777886658789997799997798-77822245332233455566555445654
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGN-HVDVVELDAASHTSIDDVREIIDQIYYKP  102 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~-~~d~~e~~~~s~~~id~ir~l~~~~~~~p  102 (369)
                      .|+.|-+|.||||+-..+.    ........||..++-     ..+.-++ ...+.++.     |-+..|.+-+.-. . 
T Consensus         2 ililGLd~aGKTTil~~l~----~~~~~~~~PT~G~~~-----~~~~~~~~~l~~~Dlg-----G~~~~R~lW~~Y~-~-   65 (167)
T cd04161           2 LLTVGLDNAGKTTLVSALQ----GEIPKKVAPTVGFTP-----TKLRLDKYEVCIFDLG-----GGANFRGIWVNYY-A-   65 (167)
T ss_pred             EEEEEECCCCHHHHHHHHC----CCCCCCCCCCCCCCE-----EEEEECCEEEEEEECC-----CCHHHHHHHHHHC-C-
T ss_conf             8999008998899999982----899876508777317-----9999899999999899-----8778889999873-4-


Q ss_pred             HCCCCCEEEEECHHHCC-CCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             20465237751156648-00167899999721221114665067543303567543332102454001356787
Q 537021.9.peg.4  103 ISARFRVYIMDEVQMLS-TAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFT  175 (369)
Q Consensus       103 ~~~~~kv~iid~a~~m~-~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L~  175 (369)
                       ...-=||+||.+|.-+ .+|...|-+.|++|.-.-+=||+--|-+.++            ..++.++|.+.|.
T Consensus        66 -~~~gIIfVVDssD~~rl~eak~~L~~lL~~~~l~~~PiLIlaNKqDl~------------~a~~~~ei~~~L~  126 (167)
T cd04161          66 -EAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKK------------NALLGADVIEYLS  126 (167)
T ss_pred             -CCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCC------------CCCCHHHHHHHHC
T ss_conf             -776579998557588999999999999658877899599998865761------------5899999998819


No 461
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=93.46  E-value=0.18  Score=30.97  Aligned_cols=40  Identities=18%  Similarity=0.237  Sum_probs=27.9

Q ss_pred             CCCCEEEEECHH-HCCCCHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf             465237751156-648001678999997212211146650675
Q 537021.9.peg.4  105 ARFRVYIMDEVQ-MLSTAAFNGLLKTLEEPPPHVKFIFATTEI  146 (369)
Q Consensus       105 ~~~kv~iid~a~-~m~~~a~NaLLK~lEEPp~~~~fil~t~~~  146 (369)
                      .+.+++|+||-- .|-.++-..|.+.|-+.+.  .+|+++++.
T Consensus       180 ~~PdlLlLDEPTn~LD~~~i~~L~~~L~~~~g--tvivVSHDr  220 (556)
T PRK11819        180 SKPDMLLLDEPTNHLDAESVAWLEQFLHDYPG--TVVAVTHDR  220 (556)
T ss_pred             CCCCEEEECCCCCCCCHHHHHHHHHHHHHCCC--CEEEEEECH
T ss_conf             69998998488777897789999999763378--779999157


No 462
>TIGR00954 3a01203 Peroxysomal long chain fatty acyl transporter; InterPro: IPR005283   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     The members of this family are integral membrane proteins and they are involved in the import of activated long-chain fatty acids from the cytosol to the peroxisomal matrix. ; GO: 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane.
Probab=93.46  E-value=0.047  Score=35.25  Aligned_cols=24  Identities=25%  Similarity=0.527  Sum_probs=20.9

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             7062010787988889999999996
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      .| +|.+||-||||+++=|+++.-.
T Consensus       557 ~~-lLi~GPNGCGKSSLFRiLGeLW  580 (788)
T TIGR00954       557 NH-LLICGPNGCGKSSLFRILGELW  580 (788)
T ss_pred             CE-EEEECCCCCCHHHHHHHHHHHC
T ss_conf             76-6876889986478999986430


No 463
>KOG0952 consensus
Probab=93.42  E-value=0.11  Score=32.43  Aligned_cols=36  Identities=25%  Similarity=0.407  Sum_probs=22.3

Q ss_pred             HHHHCCCCCEE------EHHCCCCCCCHHHHHHH-HHHHHCCC
Q ss_conf             99982876706------20107879888899999-99996146
Q 537021.9.peg.4   13 NAFKSGRIAQS------YMLSGTRGIGKTTTARI-IARSLNYK   48 (369)
Q Consensus        13 ~~~~~~~~~ha------~lf~G~~G~GK~~~a~~-~A~~l~c~   48 (369)
                      |.+++--.|.|      .|.+-|.|.|||-+|.. .-+.+-|+
T Consensus       112 N~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~  154 (1230)
T KOG0952         112 NRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEH  154 (1230)
T ss_pred             HHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf             7778774146514788779977789971678999999999850


No 464
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component.  Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems.  The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions.  The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.40  E-value=0.22  Score=30.35  Aligned_cols=21  Identities=38%  Similarity=0.474  Sum_probs=17.0

Q ss_pred             EEHHCCCCCCCHHHHHHHHHH
Q ss_conf             620107879888899999999
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIAR   43 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~   43 (369)
                      .+-+.||.|+||||+.+.++-
T Consensus        28 i~~iiGpnGaGKSTLl~~i~G   48 (200)
T cd03217          28 VHALMGPNGSGKSTLAKTIMG   48 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHCC
T ss_conf             999996899999999999707


No 465
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.39  E-value=0.44  Score=28.13  Aligned_cols=115  Identities=18%  Similarity=0.200  Sum_probs=60.7

Q ss_pred             HHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH-HHHHHCCCCCCCCCCCCCCCC
Q ss_conf             9999999982876706201078798888999999999614687778866587899977-999977987782224533223
Q 537021.9.peg.4    8 IKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEH-CQAIIRGNHVDVVELDAASHT   86 (369)
Q Consensus         8 ~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~-c~~i~~~~~~d~~e~~~~s~~   86 (369)
                      +..++-+-..|++   -..+|.+|+|||+.+.-++..    ++....+.++||.+-.. |..+...         . ...
T Consensus        84 ~~~~~~A~k~g~l---~~vyg~~g~gKt~a~~~y~~s----~p~~~l~~~~p~~~a~~~i~~i~~~---------~-~~~  146 (297)
T COG2842          84 FFRTRPASKTGSL---VVVYGYAGLGKTQAAKNYAPS----NPNALLIEADPSYTALVLILIICAA---------A-FGA  146 (297)
T ss_pred             HHHHHHHHHCCCE---EEEECCCCCHHHHHHHHHCCC----CCCCEEECCCHHHHHHHHHHHHHHH---------H-HCC
T ss_conf             5420555516854---788633220068999865335----8641361588136788999999998---------7-401


Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf             345556655544565420465237751156648001678999997212211146
Q 537021.9.peg.4   87 SIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFI  140 (369)
Q Consensus        87 ~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fi  140 (369)
                      .-..+++..+...-.- ++..+.+++|||+.|-..|..-|.|..++.+-.++++
T Consensus       147 ~~~~~~d~~~~~~~~l-~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~~vLv  199 (297)
T COG2842         147 TDGTINDLTERLMIRL-RDTVRLIIVDEADRLPYRALEELRRIHDKTGIGVVLV  199 (297)
T ss_pred             CCHHHHHHHHHHHHHH-CCCCCEEEEEHHHCCCHHHHHHHHHHHHHHCCEEEEE
T ss_conf             4216888899999997-1576526650321258689999999887508159983


No 466
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt   The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export.  Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters.  A typical system is made of a conserved integral membrane and an ABC.  In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=93.38  E-value=0.093  Score=33.11  Aligned_cols=23  Identities=35%  Similarity=0.458  Sum_probs=18.2

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             62010787988889999999996
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      .+-+.||.|+||||+.++++-.+
T Consensus        50 ivgilG~NGaGKSTLl~~i~Gl~   72 (224)
T cd03220          50 RIGLIGRNGAGKSTLLRLLAGIY   72 (224)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCC
T ss_conf             99999799981999999997587


No 467
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.33  E-value=0.29  Score=29.41  Aligned_cols=23  Identities=39%  Similarity=0.543  Sum_probs=20.1

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             20107879888899999999961
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLN   46 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~   46 (369)
                      +-|+|.+|+||||+|+.+.+.|.
T Consensus         2 iW~tGLsgsGKTTlA~~l~~~L~   24 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKLF   24 (149)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
T ss_conf             89879999999999999999999


No 468
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=93.33  E-value=0.056  Score=34.71  Aligned_cols=27  Identities=26%  Similarity=0.458  Sum_probs=22.9

Q ss_pred             EEEHHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             062010787988889999999996146
Q 537021.9.peg.4   22 QSYMLSGTRGIGKTTTARIIARSLNYK   48 (369)
Q Consensus        22 ha~lf~G~~G~GK~~~a~~~A~~l~c~   48 (369)
                      ...|..||||.||+|+|.++|..++-.
T Consensus       264 eGILIAG~PGaGKsTFaqAlAefy~~~  290 (604)
T COG1855         264 EGILIAGAPGAGKSTFAQALAEFYASQ  290 (604)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             646995699997468999999999866


No 469
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=93.32  E-value=0.28  Score=29.61  Aligned_cols=22  Identities=27%  Similarity=0.557  Sum_probs=18.4

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             2010787988889999999996
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      .+|+||.|+||+|++..+.+.+
T Consensus         4 ivl~GPSG~GK~tl~~~L~~~~   25 (182)
T pfam00625         4 IVLSGPSGVGKSHIKKALLDEY   25 (182)
T ss_pred             EEEECCCCCCHHHHHHHHHHHC
T ss_conf             9998989999999999999848


No 470
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.29  E-value=0.064  Score=34.29  Aligned_cols=23  Identities=30%  Similarity=0.663  Sum_probs=20.5

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             20107879888899999999961
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLN   46 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~   46 (369)
                      .+++|-||+||||+|+.+++.+.
T Consensus         2 ivl~GlP~SGKSt~a~~L~~~l~   24 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELSKKLS   24 (249)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
T ss_conf             78967899989999999999999


No 471
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=93.23  E-value=0.66  Score=26.82  Aligned_cols=51  Identities=14%  Similarity=0.072  Sum_probs=29.5

Q ss_pred             CCCEEEEECHHHCCCCH-HHHHHHHHHHCCCCCCEE-EEECCCCCCCHHHHHH
Q ss_conf             65237751156648001-678999997212211146-6506754330356754
Q 537021.9.peg.4  106 RFRVYIMDEVQMLSTAA-FNGLLKTLEEPPPHVKFI-FATTEIRKIPITVLSR  156 (369)
Q Consensus       106 ~~kv~iid~a~~m~~~a-~NaLLK~lEEPp~~~~fi-l~t~~~~~ll~TI~SR  156 (369)
                      .-+.+||||||+|-... .+-+-+.+.+.|.....+ +.+|-++..+..+..+
T Consensus       149 ~l~~lVlDEAD~mld~gF~~~i~~I~~~~~~~~Q~llfSATl~~~~v~~l~~~  201 (417)
T PRK11192        149 AVETLILDEADRMLDMGFAQDVEHIAAETRWRKQTLLFSATLEGDGVQDFAER  201 (417)
T ss_pred             CCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHH
T ss_conf             57489996755211135478999998647677238999732684789999998


No 472
>PRK05595 replicative DNA helicase; Provisional
Probab=93.23  E-value=0.29  Score=29.40  Aligned_cols=24  Identities=29%  Similarity=0.324  Sum_probs=17.6

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHH
Q ss_conf             706201078798888999999999
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARS   44 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~   44 (369)
                      ++-+++.|.||.|||++|.-+|..
T Consensus       201 GdLiiiaaRP~mGKTa~alnia~~  224 (444)
T PRK05595        201 GDMILIAARPSMGKTTFALNIAEY  224 (444)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             777999857989807999999999


No 473
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=93.17  E-value=0.19  Score=30.77  Aligned_cols=50  Identities=18%  Similarity=0.170  Sum_probs=31.1

Q ss_pred             CCCCEEEEECHH-HCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf             465237751156-64800167899999721221114665067543303567543
Q 537021.9.peg.4  105 ARFRVYIMDEVQ-MLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRC  157 (369)
Q Consensus       105 ~~~kv~iid~a~-~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRc  157 (369)
                      .+..|+|+||-- .|-..+..-|.+.|.+.+.  -+|+++++.. ++..+..|+
T Consensus       166 ~~PdlLLLDEPTnhLD~~~i~~L~~~L~~~~g--tvilVSHDr~-fL~~v~dri  216 (638)
T PRK10636        166 CRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQG--TLILISHDRD-FLDPIVDKI  216 (638)
T ss_pred             CCCCEEEECCCCCCCCHHHHHHHHHHHHHCCC--EEEEEECCHH-HHHHCCCCE
T ss_conf             89998997088888998999999999997698--1999966689-887147716


No 474
>pfam00406 ADK Adenylate kinase.
Probab=93.16  E-value=0.13  Score=31.99  Aligned_cols=23  Identities=35%  Similarity=0.419  Sum_probs=19.6

Q ss_pred             HCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             10787988889999999996146
Q 537021.9.peg.4   26 LSGTRGIGKTTTARIIARSLNYK   48 (369)
Q Consensus        26 f~G~~G~GK~~~a~~~A~~l~c~   48 (369)
                      |-||||+||.|.|..+|+.++..
T Consensus         1 i~G~PGsGKgTqa~~La~~~~~~   23 (186)
T pfam00406         1 LLGPPGAGKGTQAERIVQKYGIV   23 (186)
T ss_pred             CCCCCCCCHHHHHHHHHHHHCCE
T ss_conf             91889898599999999985990


No 475
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=93.12  E-value=0.13  Score=31.98  Aligned_cols=38  Identities=26%  Similarity=0.385  Sum_probs=32.6

Q ss_pred             HHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             99999982876706201078798888999999999614
Q 537021.9.peg.4   10 TLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNY   47 (369)
Q Consensus        10 ~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c   47 (369)
                      .|.+-++.-+-|--.|+-|++|+||+|.|..+|..|.-
T Consensus        78 ~lwR~ir~~~~p~IILIGGasGVGkStIA~ElA~rLgI  115 (299)
T COG2074          78 LLWRRIRKMKRPLIILIGGASGVGKSTIAGELARRLGI  115 (299)
T ss_pred             HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC
T ss_conf             99999861578759996178877725799999997298


No 476
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.12  E-value=0.2  Score=30.62  Aligned_cols=113  Identities=17%  Similarity=0.211  Sum_probs=52.9

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             62010787988889999999996146877788665-87899977999977987782224533223345556655544565
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV-EFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYK  101 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~-~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~  101 (369)
                      -.|++||.|+||||+...+...+|-..... ..+. +|       ..+   .|++..-+-.....+.| .....+ .-..
T Consensus         3 liLitG~TGSGKTTtl~all~~i~~~~~~~-IiTiEDP-------iE~---~~~~~~~~i~q~e~g~~-~~sf~~-~lr~   69 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHH-ILTIEDP-------IEF---VHESKRSLINQREVGLD-TLSFEN-ALKA   69 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCCCE-EEEECCC-------HHH---HCCCCCEEEEECCCCCC-CCCHHH-HHHH
T ss_conf             899989999979999999998536378836-9996473-------775---23676448873330788-637999-9999


Q ss_pred             HHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH
Q ss_conf             42046523775115664800167899999721221114665067543303567
Q 537021.9.peg.4  102 PISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVL  154 (369)
Q Consensus       102 p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~  154 (369)
                      ..+-+..|++|-|.-  ..+++.+.+...+-  .|  .+++|-.......||.
T Consensus        70 aLR~~PDvI~vGEiR--d~et~~~al~aa~T--GH--lV~sTlHa~sa~~ai~  116 (198)
T cd01131          70 ALRQDPDVILVGEMR--DLETIRLALTAAET--GH--LVMSTLHTNSAAKTID  116 (198)
T ss_pred             HHHHCCCEEECCCCC--CHHHHHHHHHHHHC--CC--EEEEEECCCCHHHHHH
T ss_conf             985488857527778--99999999999971--99--3999767598999999


No 477
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=93.08  E-value=0.27  Score=29.64  Aligned_cols=24  Identities=29%  Similarity=0.380  Sum_probs=17.3

Q ss_pred             HHCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             01078798888999999999614687
Q 537021.9.peg.4   25 MLSGTRGIGKTTTARIIARSLNYKTA   50 (369)
Q Consensus        25 lf~G~~G~GK~~~a~~~A~~l~c~~~   50 (369)
                      =++|++|+|||.++.-+|  ++|+-+
T Consensus       107 Ei~Ge~gsGKTQlc~qLa--v~~qlp  130 (318)
T PRK04301        107 EFYGEFGSGKTQICHQLA--VNVQLP  130 (318)
T ss_pred             EEECCCCCCCHHHHHHHH--HHEECC
T ss_conf             886688787035667767--653376


No 478
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.06  E-value=0.37  Score=28.64  Aligned_cols=24  Identities=29%  Similarity=0.494  Sum_probs=19.3

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHH
Q ss_conf             706201078798888999999999
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARS   44 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~   44 (369)
                      +-..+++||.|+||+++-+++|.-
T Consensus        29 Ge~iaitGPSG~GKStllk~va~L   52 (223)
T COG4619          29 GEFIAITGPSGCGKSTLLKIVASL   52 (223)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHC
T ss_conf             854887678876688999999813


No 479
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=93.04  E-value=0.39  Score=28.53  Aligned_cols=129  Identities=15%  Similarity=0.168  Sum_probs=59.7

Q ss_pred             EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHH
Q ss_conf             062010787988889999999996146877788665878999779999779877822245332233455566-5554456
Q 537021.9.peg.4   22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVRE-IIDQIYY  100 (369)
Q Consensus        22 ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~-l~~~~~~  100 (369)
                      .+.|+.||.|.|||++-..|.   .-..... .+..+|+. +.... -..+....++  |--   |=+..|. +.+...+
T Consensus         4 ptvLllGl~~sGKT~Lf~~L~---~~~~~~T-~tS~~~n~-~~~~~-~~~~~~~~lv--D~P---Gh~klR~~~~~~~~~   72 (181)
T pfam09439         4 PAVIIAGLCDSGKTSLFTLLT---TGSVRKT-VTSQEPSA-AYKYM-NNKGNSLTLI--DFP---GHVKLRYKLLETLKD   72 (181)
T ss_pred             CEEEEECCCCCCHHHHHHHHH---CCCCCCE-ECCCCCCC-EEEEE-CCCCCEEEEE--ECC---CCHHHHHHHHHHHHH
T ss_conf             869998689998999999997---5994875-88867864-06875-1689668999--889---968999999986430


Q ss_pred             HHHCCCCCEEEEECH-H--HCCCCHHHHHHHHHH---HCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             542046523775115-6--648001678999997---2122111466506754330356754333210245400135678
Q 537021.9.peg.4  101 KPISARFRVYIMDEV-Q--MLSTAAFNGLLKTLE---EPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELF  174 (369)
Q Consensus       101 ~p~~~~~kv~iid~a-~--~m~~~a~NaLLK~lE---EPp~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L  174 (369)
                      ++ ..+-=||++|.+ +  .+ .+++.-|--.|-   --+..+-++++||-.+.             |...+...|...|
T Consensus        73 ~~-~~~gIVfVVDS~~~~~~l-~~~Ae~Ly~iL~~~~~~~~~vPvLI~cNKqDl-------------~~A~~~~~Ik~~L  137 (181)
T pfam09439        73 SS-SLRGLVFVVDSTAFPKEV-TDTAEFLYDILSITELLKNGIDILIACNKQEI-------------FTARPPKKIKQAL  137 (181)
T ss_pred             HC-CCEEEEEEEECCCCHHHH-HHHHHHHHHHHHCHHHCCCCCCEEEEEECCCC-------------CCCCCHHHHHHHH
T ss_conf             02-644999999786656679-99999999998445433689978999737463-------------3577999999999


Q ss_pred             HH
Q ss_conf             76
Q 537021.9.peg.4  175 TK  176 (369)
Q Consensus       175 ~~  176 (369)
                      ++
T Consensus       138 Ek  139 (181)
T pfam09439       138 EK  139 (181)
T ss_pred             HH
T ss_conf             99


No 480
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=93.03  E-value=0.26  Score=29.77  Aligned_cols=54  Identities=33%  Similarity=0.486  Sum_probs=35.7

Q ss_pred             CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCC----CCCCCCCC
Q ss_conf             67062010787988889999999996146877788665878999779999779----87782224
Q 537021.9.peg.4   20 IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRG----NHVDVVEL   80 (369)
Q Consensus        20 ~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~----~~~d~~e~   80 (369)
                      .+-..++.|+=|.||||++|.+|+.|.- ......||-..-      +....+    .|.|++.+
T Consensus        24 ~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~-~~~V~SPTFtlv------~~Y~~~~~~lyH~DlYRl   81 (149)
T COG0802          24 AGDVVLLSGDLGAGKTTLVRGIAKGLGV-DGNVKSPTFTLV------EEYEEGRLPLYHFDLYRL   81 (149)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCC-CCCCCCCCEEEE------HHHCCCCCCEEEEEEECC
T ss_conf             9988999778768859999999997499-975249876101------211379987799861125


No 481
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=93.02  E-value=0.23  Score=30.26  Aligned_cols=127  Identities=18%  Similarity=0.262  Sum_probs=63.4

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC---------CCC----CCHH
Q ss_conf             620107879888899999999961468777886658789997799997798778222453---------322----3345
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDA---------ASH----TSID   89 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~---------~s~----~~id   89 (369)
                      +.=+-|+.|.||+|+-+++|..+-=..+.     +.-.|.-.+-..+..|=+|++...+.         -++    -++|
T Consensus        55 ~vGiiG~NGaGKSTLlkliaGi~~Pt~G~-----v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~lG~~~~ei~~~~~  129 (249)
T COG1134          55 RVGIIGHNGAGKSTLLKLIAGIYKPTSGK-----VKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVD  129 (249)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCE-----EEECCEEEHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             99898789985899999995871798825-----9981467056441567785420587899999984666999998889


Q ss_pred             HHHH---HHHHHH--HHH--------------HCCCCCEEEEECHHHCC-CCHHHHHHHHHHHC-CCCCCEEEEECCCCC
Q ss_conf             5566---555445--654--------------20465237751156648-00167899999721-221114665067543
Q 537021.9.peg.4   90 DVRE---IIDQIY--YKP--------------ISARFRVYIMDEVQMLS-TAAFNGLLKTLEEP-PPHVKFIFATTEIRK  148 (369)
Q Consensus        90 ~ir~---l~~~~~--~~p--------------~~~~~kv~iid~a~~m~-~~a~NaLLK~lEEP-p~~~~fil~t~~~~~  148 (369)
                      +|-+   |-+++.  .+.              ..-..-|+|+||+=.-- .+-+..=++-++|. -.+..+||++++.+ 
T Consensus       130 eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-  208 (249)
T COG1134         130 EIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-  208 (249)
T ss_pred             HHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-
T ss_conf             9999987788761744112588999988875331378789986134407799999999999999975987999978879-


Q ss_pred             CCHHHHHHHH
Q ss_conf             3035675433
Q 537021.9.peg.4  149 IPITVLSRCQ  158 (369)
Q Consensus       149 ll~TI~SRcq  158 (369)
                         +|++=|-
T Consensus       209 ---~I~~~Cd  215 (249)
T COG1134         209 ---AIKQYCD  215 (249)
T ss_pred             ---HHHHHCC
T ss_conf             ---9998567


No 482
>PHA02244 ATPase-like protein
Probab=92.98  E-value=0.1  Score=32.71  Aligned_cols=31  Identities=29%  Similarity=0.490  Sum_probs=25.7

Q ss_pred             HHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             998287670620107879888899999999961
Q 537021.9.peg.4   14 AFKSGRIAQSYMLSGTRGIGKTTTARIIARSLN   46 (369)
Q Consensus        14 ~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~   46 (369)
                      .+.+..+|- || +||.|+|||++|.-.|++|.
T Consensus       114 ~~v~~nipV-~L-~G~AGsGKt~~A~qIA~aLd  144 (383)
T PHA02244        114 KIVNANIPV-FL-KGGAGSGKNHIAEQIAEALD  144 (383)
T ss_pred             HHHHCCCCE-EE-ECCCCCCHHHHHHHHHHHHC
T ss_conf             987359856-99-75888863489999999858


No 483
>PRK10646 putative ATPase; Provisional
Probab=92.97  E-value=0.27  Score=29.67  Aligned_cols=101  Identities=18%  Similarity=0.123  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHCC-CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             9999999999828-767062010787988889999999996146877788665878999779999779877822245332
Q 537021.9.peg.4    6 PMIKTLTNAFKSG-RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAAS   84 (369)
Q Consensus         6 ~~~~~l~~~~~~~-~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s   84 (369)
                      .....|-+.+... +-+-..++.|+=|.|||+++|.+++++-+.. ....|+...+..-..-.  ..-.|.|++.++.. 
T Consensus        12 ~~T~~lg~~la~~l~~g~vi~L~G~LGaGKTtf~r~i~~~lg~~~-~V~SPTf~lv~~Y~~~~--~~~~H~DlYRl~~~-   87 (153)
T PRK10646         12 QATLDLGERVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGHQG-NVKSPTYTLVEPYTLDN--LMVYHFDLYRLADP-   87 (153)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCCCCEEEEEEECCCC--CEEEEEEEECCCCH-
T ss_conf             999999999997689997999988887899999999999849978-62699764799732899--33899985346998-


Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHC
Q ss_conf             2334555665554456542046523775115664
Q 537021.9.peg.4   85 HTSIDDVREIIDQIYYKPISARFRVYIMDEVQML  118 (369)
Q Consensus        85 ~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m  118 (369)
                          +++.++-    +.-+-...-|++|+=++++
T Consensus        88 ----~e~~~lg----~~e~~~~~~i~lIEWpe~~  113 (153)
T PRK10646         88 ----EELEFMG----IRDYFANDAICLVEWPQQG  113 (153)
T ss_pred             ----HHHHHCC----CHHHHCCCCEEEEECCCCC
T ss_conf             ----8998778----7888579969999897651


No 484
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=92.96  E-value=0.081  Score=33.55  Aligned_cols=23  Identities=43%  Similarity=0.530  Sum_probs=18.6

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             62010787988889999999996
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      .+-+-||.|+||||+.++++-.+
T Consensus        52 ivgllG~NGaGKSTLlk~I~Gl~   74 (264)
T PRK13546         52 VIGLVGINGSGKSTLSNIIGGSL   74 (264)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCC
T ss_conf             99999899861999999996798


No 485
>KOG0924 consensus
Probab=92.95  E-value=0.46  Score=27.95  Aligned_cols=121  Identities=27%  Similarity=0.354  Sum_probs=56.6

Q ss_pred             HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH------HHHHHC--C-CCCC-C-
Q ss_conf             999999982876706201078798888999999999614687778866587899977------999977--9-8778-2-
Q 537021.9.peg.4    9 KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEH------CQAIIR--G-NHVD-V-   77 (369)
Q Consensus         9 ~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~------c~~i~~--~-~~~d-~-   77 (369)
                      ..|-+.|+.|+   ..++.|..|+||||-   +|+.|. +++-.+.- .-.|-+-..      .+++..  | ..-| | 
T Consensus       362 ~~ll~~ir~n~---vvvivgETGSGKTTQ---l~QyL~-edGY~~~G-mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VG  433 (1042)
T KOG0924         362 DQLLSVIRENQ---VVVIVGETGSGKTTQ---LAQYLY-EDGYADNG-MIGCTQPRRVAAISVAKRVAEEMGVTLGDTVG  433 (1042)
T ss_pred             HHHHHHHHHCC---EEEEEECCCCCCHHH---HHHHHH-HCCCCCCC-EEEECCCHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             99999986385---799993588985016---679998-62245587-15435722789999999999985876453112


Q ss_pred             CCC---CCCC-CCCH----HH--HHHHHHHHHHHHHCCCCCEEEEECHHH--CCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf             224---5332-2334----55--566555445654204652377511566--480016789999972122111466
Q 537021.9.peg.4   78 VEL---DAAS-HTSI----DD--VREIIDQIYYKPISARFRVYIMDEVQM--LSTAAFNGLLKTLEEPPPHVKFIF  141 (369)
Q Consensus        78 ~e~---~~~s-~~~i----d~--ir~l~~~~~~~p~~~~~kv~iid~a~~--m~~~a~NaLLK~lEEPp~~~~fil  141 (369)
                      +-|   |-.| +++|    |-  .|+.+.+-.    --+|.|+|+||||.  +|.+--=.|||.+=---.+...|.
T Consensus       434 YsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~----L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliV  505 (1042)
T KOG0924         434 YSIRFEDVTSEDTKIKYMTDGILLRESLKDRD----LDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIV  505 (1042)
T ss_pred             EEEEEEECCCCCEEEEEECCCHHHHHHHHHHH----HHHEEEEEECHHHHCCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             48885204787605787423057797763300----4440178851143303005899999999987422635997


No 486
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family; InterPro: IPR004346   This family includes the Helicobacter pylori protein CagE (see examples), which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration . Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro .    Similar type IV transport systems are also found in other bacteria. This family includes proteins from the trb and Vir conjugal transfer systems in Agrobacterium tumefaciens and homologues of VirB proteins from other species.; GO: 0005524 ATP binding.
Probab=92.90  E-value=0.25  Score=29.94  Aligned_cols=98  Identities=18%  Similarity=0.257  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHCC--CCCEEEEECHHHC-----CCCHHHHHHHHHHHCCCCCCEEEEECCC-CCC-----CHHHHHHH-HH
Q ss_conf             555445654204--6523775115664-----8001678999997212211146650675-433-----03567543-33
Q 537021.9.peg.4   94 IIDQIYYKPISA--RFRVYIMDEVQML-----STAAFNGLLKTLEEPPPHVKFIFATTEI-RKI-----PITVLSRC-QR  159 (369)
Q Consensus        94 l~~~~~~~p~~~--~~kv~iid~a~~m-----~~~a~NaLLK~lEEPp~~~~fil~t~~~-~~l-----l~TI~SRc-q~  159 (369)
                      |...+.- -..|  ++.|++||||+.+     =.+..+..|||+=+  .|.++||+|.+| +.+     ..||++=| +.
T Consensus       741 Lf~Ri~~-~~dg~~r~~~~~~DEaw~~l~~p~~~~~i~~~l~t~RK--~NG~~v~ATQ~~Y~d~~~s~i~~~~~~~~~T~  817 (931)
T TIGR00929       741 LFHRIEE-ALDGSNRRFLIVIDEAWKLLGDPVFAAKIKDWLKTLRK--ANGIVVLATQSIYNDALESRIADTLIEQCATK  817 (931)
T ss_pred             HHHHHHH-HHCCCCCCEEEEEECCHHHHCCHHHHHHHHHHHHHHHH--HCCEEEEECCHHHHHHHCCCHHHHHHHHCCCE
T ss_conf             9999999-72413586799851305332690789999999875766--09779863001477763154246889615834


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHH-CCCC
Q ss_conf             2102454001356787643101345-62566445653-1676
Q 537021.9.peg.4  160 FDLHRISIGDLIELFTKILQEESIE-FDPEAVAMIAR-ASDG  199 (369)
Q Consensus       160 ~~f~~l~~~~i~~~L~~i~~~E~i~-~d~~~l~~ia~-~s~G  199 (369)
                      |-|+.... ....+..    .=++. +++.-.+.|.+ .+..
T Consensus       818 I~lPn~~a-~~~dy~~----~f~~~glte~E~~~l~~~~~~~  854 (931)
T TIGR00929       818 IFLPNPKA-DREDYAE----GFGIKGLTEREFELLKSATPEE  854 (931)
T ss_pred             EECCCCCC-CHHHHHH----HCCCCCCCHHHHHHHHHHCCCC
T ss_conf             32488456-8589998----5588897989999998525701


No 487
>PRK12338 hypothetical protein; Provisional
Probab=92.90  E-value=0.15  Score=31.58  Aligned_cols=117  Identities=18%  Similarity=0.274  Sum_probs=58.9

Q ss_pred             CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCC-----CCCCCCC--------CCCC--
Q ss_conf             767062010787988889999999996146877788665878999779999779-----8778222--------4533--
Q 537021.9.peg.4   19 RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRG-----NHVDVVE--------LDAA--   83 (369)
Q Consensus        19 ~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~-----~~~d~~e--------~~~~--   83 (369)
                      |-|-..|+.|..||||+|+|..+|..|.-.+--          ..++-|.+..+     -.|-++.        +...  
T Consensus         2 r~PliILiGGtSGvGKSTlAseLAsRLgI~tvI----------sTDsIRevmR~~is~e~~P~L~~STY~A~~~Lr~~~~   71 (320)
T PRK12338          2 RKPYVILIGSASGIGKSTIASEVARRLNIKHLI----------ETDFIREVVRGIIGKEYAPALHMSSYNAYTALRDKDH   71 (320)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEE----------CCHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHCCCCC
T ss_conf             976799970688876888999999851987110----------3347999999833804153455420267887267423


Q ss_pred             -CCCCH---------HHHHHH---HHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHH-HCCCCCCEEEEECCCCCC
Q ss_conf             -22334---------555665---5544565420465237751156648001678999997-212211146650675433
Q 537021.9.peg.4   84 -SHTSI---------DDVREI---IDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLE-EPPPHVKFIFATTEIRKI  149 (369)
Q Consensus        84 -s~~~i---------d~ir~l---~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lE-EPp~~~~fil~t~~~~~l  149 (369)
                       .+.+.         +|.--+   ++.+ ..-...++.=+||+.+|-..     .|.+.++ .+|....|+.++.+-++=
T Consensus        72 ~~~~~~~~~vi~Gfe~q~e~V~~~le~v-I~r~~~~~~sivIEGVHLvP-----gfi~~~~~~~~~~i~F~i~~~~E~kH  145 (320)
T PRK12338         72 FVPKRFEELVIAGFEEHASFVIPAIEKV-IKRAVTDADDIVIEGVHLVP-----GLINIEQFYEYANIHFFILYADEEEH  145 (320)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCCEEEEEEEECH-----HHCCHHHHCCCCCCEEEEEECCHHHH
T ss_conf             5774116789999999989999999999-99998648867998453055-----55057662266663699998176899


Q ss_pred             CH
Q ss_conf             03
Q 537021.9.peg.4  150 PI  151 (369)
Q Consensus       150 l~  151 (369)
                      ..
T Consensus       146 ~e  147 (320)
T PRK12338        146 KE  147 (320)
T ss_pred             HH
T ss_conf             99


No 488
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).  This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=92.89  E-value=0.29  Score=29.50  Aligned_cols=29  Identities=31%  Similarity=0.496  Sum_probs=21.7

Q ss_pred             CCCCCEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             28767062010787988889999999996
Q 537021.9.peg.4   17 SGRIAQSYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        17 ~~~~~ha~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      +.+-|.-|||.|=-|+||||+-=-+|+.+
T Consensus        78 ~~~kp~Vil~VGVNG~GKTTTIaKLA~~l  106 (284)
T TIGR00064        78 EEKKPNVILFVGVNGVGKTTTIAKLANKL  106 (284)
T ss_pred             CCCCCEEEEEEEEECCCHHHHHHHHHHHH
T ss_conf             47897799998440886010288999999


No 489
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=92.89  E-value=0.26  Score=29.77  Aligned_cols=36  Identities=25%  Similarity=0.341  Sum_probs=29.3

Q ss_pred             HHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             999998287670620107879888899999999961
Q 537021.9.peg.4   11 LTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLN   46 (369)
Q Consensus        11 l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~   46 (369)
                      |.+.+..-.-|--.|+-|..|+||+|+|-.+|..|.
T Consensus       252 lwR~ir~~~~PiiILIGGaSGvGKSTlAseLA~RLG  287 (492)
T PRK12337        252 LLRVLRKPPRPLHVLLGGVSGTGKSVLAAELAYRLG  287 (492)
T ss_pred             HHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             999973568876999607888668889999999609


No 490
>KOG3354 consensus
Probab=92.88  E-value=0.89  Score=25.84  Aligned_cols=128  Identities=16%  Similarity=0.185  Sum_probs=65.9

Q ss_pred             CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             87670620107879888899999999961468777886658789997799997798778222453322334555665554
Q 537021.9.peg.4   18 GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQ   97 (369)
Q Consensus        18 ~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~   97 (369)
                      +..+-+++.-|+.|+||+|++.+++..|-|.--+.+.     ...-.+-.++..|.-.+       .+-.......+...
T Consensus         9 ~~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd-----~Hp~~NveKM~~GipLn-------D~DR~pWL~~i~~~   76 (191)
T KOG3354           9 GPFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDD-----LHPPANVEKMTQGIPLN-------DDDRWPWLKKIAVE   76 (191)
T ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCC-----CCCHHHHHHHHCCCCCC-------CCCCCHHHHHHHHH
T ss_conf             7776059998358877445999999985886245555-----79878899883699888-------53211799999999


Q ss_pred             HHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHH------HCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             4565420465237751156648001678999997------21221114665067543303567543332
Q 537021.9.peg.4   98 IYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLE------EPPPHVKFIFATTEIRKIPITVLSRCQRF  160 (369)
Q Consensus        98 ~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lE------EPp~~~~fil~t~~~~~ll~TI~SRcq~~  160 (369)
                      +...-. .+..|++--.|  +-+.--.-|.-.++      -|.....||+..-+.+-|+.-..||--||
T Consensus        77 ~~~~l~-~~q~vVlACSa--LKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHF  142 (191)
T KOG3354          77 LRKALA-SGQGVVLACSA--LKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHF  142 (191)
T ss_pred             HHHHHH-CCCEEEEEHHH--HHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCC
T ss_conf             998763-27818997288--8899999997321147866786405888633042999999984066666


No 491
>KOG0354 consensus
Probab=92.86  E-value=0.9  Score=25.82  Aligned_cols=146  Identities=14%  Similarity=0.113  Sum_probs=75.2

Q ss_pred             HHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCC----CCCCCCCCCCHHHHHHHCCCCCCCC-CCCC-CCCCCH
Q ss_conf             982876706201078798888999999999614687778----8665878999779999779877822-2453-322334
Q 537021.9.peg.4   15 FKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHID----VPTVEFEGFGEHCQAIIRGNHVDVV-ELDA-ASHTSI   88 (369)
Q Consensus        15 ~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~----~~~~~~c~~c~~c~~i~~~~~~d~~-e~~~-~s~~~i   88 (369)
                      +..-.+.+--|.+=|.|.|||-.|-..++-.+-.-+...    .|+.-.-++-..|..+.-.. ..+. +..+ .+..+.
T Consensus        70 ivq~ALgkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~-~~~T~~l~~~~~~~~r  148 (746)
T KOG0354          70 LVQPALGKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIP-YSVTGQLGDTVPRSNR  148 (746)
T ss_pred             HHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCC-CCCEEECCCCCCCCCH
T ss_conf             867862687699953599861047999999972377643899607711788889887620676-0104550575688762


Q ss_pred             HHH-H---------HHHHHHHHHHH---CCCCCEEEEECHHHCCCCHH--HHHHHHHHHCCCCCCEEEEECCCCCCCHHH
Q ss_conf             555-6---------65554456542---04652377511566480016--789999972122111466506754330356
Q 537021.9.peg.4   89 DDV-R---------EIIDQIYYKPI---SARFRVYIMDEVQMLSTAAF--NGLLKTLEEPPPHVKFIFATTEIRKIPITV  153 (369)
Q Consensus        89 d~i-r---------~l~~~~~~~p~---~~~~kv~iid~a~~m~~~a~--NaLLK~lEEPp~~~~fil~t~~~~~ll~TI  153 (369)
                      .++ .         +++++--..+.   -+.+..+||||||+=+.+.+  |--...++-+-.+-..|-.|..|++=..-+
T Consensus       149 ~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG~~~~~v  228 (746)
T KOG0354         149 GEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQILGLTASPGSKLEQV  228 (746)
T ss_pred             HHHHCCCCEEEECHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHH
T ss_conf             45310263589672763433254334545517999972224455566179999999986514661799855888458999


Q ss_pred             HHHHHHHH
Q ss_conf             75433321
Q 537021.9.peg.4  154 LSRCQRFD  161 (369)
Q Consensus       154 ~SRcq~~~  161 (369)
                      +.=|--+.
T Consensus       229 ~~~I~~L~  236 (746)
T KOG0354         229 QNVIDNLC  236 (746)
T ss_pred             HHHHHHHH
T ss_conf             99998520


No 492
>PRK00889 adenylylsulfate kinase; Provisional
Probab=92.83  E-value=0.095  Score=33.01  Aligned_cols=26  Identities=31%  Similarity=0.487  Sum_probs=22.3

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             70620107879888899999999961
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARSLN   46 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~l~   46 (369)
                      +..+-|+|.+|+||||+|+.+.+.|.
T Consensus         4 g~viWltGlsgSGKTTia~~l~~~L~   29 (175)
T PRK00889          4 GVTVWFTGLSGAGKTTISHALAEKLR   29 (175)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             88999889899999999999999999


No 493
>PRK08506 replicative DNA helicase; Provisional
Probab=92.81  E-value=0.32  Score=29.11  Aligned_cols=25  Identities=16%  Similarity=0.205  Sum_probs=20.2

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             7062010787988889999999996
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      +.-+++.|-||.|||++|.-+|...
T Consensus       193 gdLiIIAARPsmGKTAfAlniA~~~  217 (473)
T PRK08506        193 GDLIIIAARPSMGKTTLVLNMVLKA  217 (473)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             6279995079986789999999999


No 494
>PRK05748 replicative DNA helicase; Provisional
Probab=92.73  E-value=0.34  Score=28.93  Aligned_cols=24  Identities=25%  Similarity=0.321  Sum_probs=17.6

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHH
Q ss_conf             706201078798888999999999
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARS   44 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~   44 (369)
                      ++-+++.|.||.|||++|.-+|..
T Consensus       203 g~LiviaaRP~mGKTa~alnia~~  226 (448)
T PRK05748        203 NDLIIVAARPSVGKTAFALNIAQN  226 (448)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHH
T ss_conf             737999847998768999999999


No 495
>cd01125 repA Hexameric Replicative Helicase RepA.  RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.69  E-value=0.94  Score=25.66  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=20.5

Q ss_pred             HHCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             0107879888899999999961468
Q 537021.9.peg.4   25 MLSGTRGIGKTTTARIIARSLNYKT   49 (369)
Q Consensus        25 lf~G~~G~GK~~~a~~~A~~l~c~~   49 (369)
                      ++.||+|+||+.+|.-+|-++-+-.
T Consensus         5 ~l~g~gG~GKS~lal~lAl~vA~G~   29 (239)
T cd01125           5 ALVAPGGTGKSSLLLVLALAMALGK   29 (239)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf             9980899888999999999997599


No 496
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=92.68  E-value=0.16  Score=31.42  Aligned_cols=39  Identities=36%  Similarity=0.486  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHH-HHHHHHHHH
Q ss_conf             48999999999982876706201078798888-999999999
Q 537021.9.peg.4    4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKT-TTARIIARS   44 (369)
Q Consensus         4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~-~~a~~~A~~   44 (369)
                      |..+++.|.+.+..|.=.  ..+-|-.|+||| |+|...|+.
T Consensus        14 QP~AI~~L~~~l~~G~~~--QtLLGvTGsGKTFT~AnVIa~~   53 (667)
T TIGR00631        14 QPKAIAKLVEGLEAGEKE--QTLLGVTGSGKTFTMANVIAQV   53 (667)
T ss_pred             HHHHHHHHHHHHHCCCCC--EEEEEEECCCHHHHHHHHHHHH
T ss_conf             189999999998568871--4785321486278898999984


No 497
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=92.63  E-value=0.54  Score=27.43  Aligned_cols=147  Identities=16%  Similarity=0.177  Sum_probs=70.4

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHHHCCCC-CCCCCCCCCCCC-CCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             70620107879888899999999961468-777886658789-9977999977987782224533223345556655544
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARSLNYKT-AHIDVPTVEFEG-FGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQI   98 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~-~~~~~~~~~~c~-~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~   98 (369)
                      .| +++.|.||+||||+-..||..+.-.. ...+.|...-|. .-..|+....-+.-|++.....++..+.+...-.  -
T Consensus       223 ~~-~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~--~  299 (824)
T COG5635         223 AK-LLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIAKQLIEAH--Q  299 (824)
T ss_pred             HH-EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHH--H
T ss_conf             23-33446888762679999999974152566567734442315654444521649999999985146765004689--9


Q ss_pred             HHHHHCCCCCEEEEECHHHCCCCHHHHHHH----HHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             565420465237751156648001678999----9972122111466506754330356754333210245400135678
Q 537021.9.peg.4   99 YYKPISARFRVYIMDEVQMLSTAAFNGLLK----TLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELF  174 (369)
Q Consensus        99 ~~~p~~~~~kv~iid~a~~m~~~a~NaLLK----~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L  174 (369)
                        .-...+.-.+++|..|-|-.+..++..+    .+-+.| ++.||++| .++-- ......-..+...+..+..|.+.+
T Consensus       300 --e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~~-~~~~iltc-R~~~~-~~~~~~f~~~ei~~~~~~~i~~~~  374 (824)
T COG5635         300 --ELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEYP-DAQVLLTC-RPDTY-KEEFKGFAVFEIYKFLDLQINQFI  374 (824)
T ss_pred             --HHHHCCCEEEECCCCCHHCCCCHHHHHHHHHHHHHCCC-CCCEEEEE-CCCCC-HHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf             --99842775764033330122333789999987753057-77279982-66310-215654323102424478899899


Q ss_pred             H
Q ss_conf             7
Q 537021.9.peg.4  175 T  175 (369)
Q Consensus       175 ~  175 (369)
                      .
T Consensus       375 ~  375 (824)
T COG5635         375 L  375 (824)
T ss_pred             H
T ss_conf             9


No 498
>PRK08840 replicative DNA helicase; Provisional
Probab=92.56  E-value=0.63  Score=26.97  Aligned_cols=24  Identities=21%  Similarity=0.307  Sum_probs=18.7

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHH
Q ss_conf             706201078798888999999999
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARS   44 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~   44 (369)
                      ++-+++.|.||.|||++|.-+|..
T Consensus       217 G~LiviaaRPsmGKTalalnia~n  240 (464)
T PRK08840        217 SDLIIVAARPSMGKTTFAMNLCEN  240 (464)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHH
T ss_conf             767999837987368999999999


No 499
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=92.54  E-value=0.39  Score=28.50  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=18.7

Q ss_pred             EEHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             62010787988889999999996
Q 537021.9.peg.4   23 SYMLSGTRGIGKTTTARIIARSL   45 (369)
Q Consensus        23 a~lf~G~~G~GK~~~a~~~A~~l   45 (369)
                      .+-+.||.|+||||+++.++..+
T Consensus        39 ~v~iiG~nGsGKSTL~r~l~gl~   61 (281)
T PRK13633         39 FLVILGHNGSGKSTIAKHMNALL   61 (281)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCC
T ss_conf             99999999984999999997588


No 500
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion.  Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins.  Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.54  E-value=0.48  Score=27.85  Aligned_cols=117  Identities=15%  Similarity=0.142  Sum_probs=0.0

Q ss_pred             EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC-----CCCCCHHHHHHHCCCCC---CCCCCCCCCCCCHHHHHHHH
Q ss_conf             20107879888899999999961468777886658-----78999779999779877---82224533223345556655
Q 537021.9.peg.4   24 YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVE-----FEGFGEHCQAIIRGNHV---DVVELDAASHTSIDDVREII   95 (369)
Q Consensus        24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~-----~c~~c~~c~~i~~~~~~---d~~e~~~~s~~~id~ir~l~   95 (369)
                      +.+.||.|+||||+.+..-............+...     ..++...-..+.-+..+   .+..+++--+-.|.=.|.|.
T Consensus        24 ~~iiG~nGsGKSTLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~LSGGqkQRvaiAraL~  103 (176)
T cd03238          24 VVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELF  103 (176)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHCCHHHCCHHHCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             99999999989999998887610311203210137553688577999997488667789916868999999999999998


Q ss_pred             HHHHHHHHCCCCCEEEEECH-HHCCCCHHHHHHHHHHH-CCCCCCEEEEECCCC
Q ss_conf             54456542046523775115-66480016789999972-122111466506754
Q 537021.9.peg.4   96 DQIYYKPISARFRVYIMDEV-QMLSTAAFNGLLKTLEE-PPPHVKFIFATTEIR  147 (369)
Q Consensus        96 ~~~~~~p~~~~~kv~iid~a-~~m~~~a~NaLLK~lEE-Pp~~~~fil~t~~~~  147 (369)
                             ...+..|+|+||. -.|-..+...+++.+.+ --.+...|++|++++
T Consensus       104 -------~~p~~~ililDEPtsgLD~~~~~~l~~~l~~l~~~g~TvI~vtHd~~  150 (176)
T cd03238         104 -------SEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD  150 (176)
T ss_pred             -------HCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf             -------68998689971774458987999999999999987998999947879


Done!