HHsearch alignment for GI: peg_472 and conserved domain: pfam00004
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=99.24 E-value=3.2e-11 Score=102.89 Aligned_cols=111 Identities=27% Similarity=0.360 Sum_probs=73.2
Q ss_pred EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 20107879888899999999961468777886658789997799997798778222453322334555665554456542
Q 537021.9.peg.4 24 YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPI 103 (369)
Q Consensus 24 ~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~ 103 (369)
T Consensus 1 iLl~GppGtGKT~~a~~la~~~~~~~~~v~------~~------~~~-~~~-----~---g-~~~~~i~~~f~~a~~--- 55 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEIS------GS------ELV-SKY-----V---G-ESEKRLRELFEAAKK--- 55 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHHCCCCEECC------CC------CCC-CCC-----C---C-HHHHHHHHHHHHHHH---
T ss_conf 987899999999999999999789853324------20------122-233-----4---5-068889999999997---
Q ss_pred CCCCCEEEEECHHHCCC-----------CHHHHHHHHHHH---CCCCCCEEEEECCCCCCCHHHH-HHHHHH
Q ss_conf 04652377511566480-----------016789999972---1221114665067543303567-543332
Q 537021.9.peg.4 104 SARFRVYIMDEVQMLST-----------AAFNGLLKTLEE---PPPHVKFIFATTEIRKIPITVL-SRCQRF 160 (369)
Q Consensus 104 ~~~~kv~iid~a~~m~~-----------~a~NaLLK~lEE---Pp~~~~fil~t~~~~~ll~TI~-SRcq~~ 160 (369)
T Consensus 56 -~~p~Il~iDe~d~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~~I~tTN~~~~ld~al~r~Rfd~~ 126 (131)
T pfam00004 56 -LAPCVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSLSKVIVIAATNRPDKLDPALLRGRFDRI 126 (131)
T ss_pred -CCCCEEEECHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCHHHHCCCCEEE
T ss_conf -49918983116777516788888751326878999985022468876999975990449977962833289