HHsearch alignment for GI: peg_472 and conserved domain: pfam00270
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=96.62 E-value=0.019 Score=38.18 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHH
Q ss_conf 489999999999828767062010787988889999999
Q 537021.9.peg.4 4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIA 42 (369)
Q Consensus 4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A 42 (369)
T Consensus 4 Q~~~i~~~~~-------g~~~iv~~pTGsGKT~~~~~~~ 35 (167)
T pfam00270 4 QAEAIPAILE-------GKDVLVQAPTGSGKTLAFLLPA 35 (167)
T ss_pred HHHHHHHHHC-------CCCEEEECCCCCCHHHHHHHHH
T ss_conf 9999999976-------9978998899975899999999