HHsearch alignment for GI: peg_472 and conserved domain: pfam05496

>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=100.00  E-value=6.8e-33  Score=262.80  Aligned_cols=182  Identities=24%  Similarity=0.300  Sum_probs=148.0

Q ss_pred             CCCHHHHHHHHHHHHH-----CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf             9284899999999998-----28767062010787988889999999996146877788665878999779999779877
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFK-----SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHV   75 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~-----~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~   75 (369)
T Consensus        26 ~vGQehl~~~l~~~i~a~~~~~~~l~h-~lf~GPPG~GKTTlAriiAk~~~~~~~~~s~~--------------------   84 (234)
T pfam05496        26 YIGQEKVKENLKIFIEAAKKRGEALDH-VLLYGPPGLGKTTLANIIANEMGVNIRITSGP--------------------   84 (234)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCEEEECCH--------------------
T ss_conf             069499999999999988742777662-78878999988899999998408753761426--------------------


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHH----------CCCC--------C
Q ss_conf             822245332233455566555445654204652377511566480016789999972----------1221--------1
Q 537021.9.peg.4   76 DVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEE----------PPPH--------V  137 (369)
Q Consensus        76 d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEE----------Pp~~--------~  137 (369)
T Consensus        85 -----------~i~~~~di~~~l---~~~~~~~ILFIDEIHr~nK~qqd~Llp~vE~g~i~i~ig~~~~A~~~~~e~P~F  150 (234)
T pfam05496        85 -----------ALEKPGDLAAIL---TNLEPGDVLFIDEIHRLNRAVEEILYPAMEDFRLDIVIGKGPSARSIRLDLPPF  150 (234)
T ss_pred             -----------HHHHHHHHHHHH---HHCCCCCEEEEECHHHCCHHHHHHCCCCCCCCEEEEEECCCCCCEEEECCCCCE
T ss_conf             -----------664389999999---845899889996654358768874455334616999963676632465268975


Q ss_pred             CEEEEECCCCCCCHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHH
Q ss_conf             1466506754330356754333-210245400135678764310134562566445653167642001100011100000
Q 537021.9.peg.4  138 KFIFATTEIRKIPITVLSRCQR-FDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCN  216 (369)
Q Consensus       138 ~fil~t~~~~~ll~TI~SRcq~-~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~  216 (369)
T Consensus       151 tLIgATTe~~~l~~pl~sR~~i~~~l~~l~~edl~~il~r~~~~l~i~i~~eal~~IA~~s~Gd~R~ALnlLe~v~d~a~  230 (234)
T pfam05496       151 TLVGATTRAGLLTSPLRDRFGIVLRLEFYSVEELEEIVKRSARILGVEIDEEGAAEIARRSRGTPRIANRLLRRVRDFAQ  230 (234)
T ss_pred             EEEEECCCCCCCCHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             99852156664777799762112442468999999999999998399959999999999779989999899999999998


Q ss_pred             C
Q ss_conf             0
Q 537021.9.peg.4  217 D  217 (369)
Q Consensus       217 ~  217 (369)
T Consensus       231 ~  231 (234)
T pfam05496       231 V  231 (234)
T ss_pred             H
T ss_conf             7