HHsearch alignment for GI: peg_472 and conserved domain: pfam05496
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=100.00 E-value=6.8e-33 Score=262.80 Aligned_cols=182 Identities=24% Similarity=0.300 Sum_probs=148.0
Q ss_pred CCCHHHHHHHHHHHHH-----CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 9284899999999998-----28767062010787988889999999996146877788665878999779999779877
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFK-----SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHV 75 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~-----~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~ 75 (369)
T Consensus 26 ~vGQehl~~~l~~~i~a~~~~~~~l~h-~lf~GPPG~GKTTlAriiAk~~~~~~~~~s~~-------------------- 84 (234)
T pfam05496 26 YIGQEKVKENLKIFIEAAKKRGEALDH-VLLYGPPGLGKTTLANIIANEMGVNIRITSGP-------------------- 84 (234)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCEEEECCH--------------------
T ss_conf 069499999999999988742777662-78878999988899999998408753761426--------------------
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHH----------CCCC--------C
Q ss_conf 822245332233455566555445654204652377511566480016789999972----------1221--------1
Q 537021.9.peg.4 76 DVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEE----------PPPH--------V 137 (369)
Q Consensus 76 d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEE----------Pp~~--------~ 137 (369)
T Consensus 85 -----------~i~~~~di~~~l---~~~~~~~ILFIDEIHr~nK~qqd~Llp~vE~g~i~i~ig~~~~A~~~~~e~P~F 150 (234)
T pfam05496 85 -----------ALEKPGDLAAIL---TNLEPGDVLFIDEIHRLNRAVEEILYPAMEDFRLDIVIGKGPSARSIRLDLPPF 150 (234)
T ss_pred -----------HHHHHHHHHHHH---HHCCCCCEEEEECHHHCCHHHHHHCCCCCCCCEEEEEECCCCCCEEEECCCCCE
T ss_conf -----------664389999999---845899889996654358768874455334616999963676632465268975
Q ss_pred CEEEEECCCCCCCHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHH
Q ss_conf 1466506754330356754333-210245400135678764310134562566445653167642001100011100000
Q 537021.9.peg.4 138 KFIFATTEIRKIPITVLSRCQR-FDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCN 216 (369)
Q Consensus 138 ~fil~t~~~~~ll~TI~SRcq~-~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~ 216 (369)
T Consensus 151 tLIgATTe~~~l~~pl~sR~~i~~~l~~l~~edl~~il~r~~~~l~i~i~~eal~~IA~~s~Gd~R~ALnlLe~v~d~a~ 230 (234)
T pfam05496 151 TLVGATTRAGLLTSPLRDRFGIVLRLEFYSVEELEEIVKRSARILGVEIDEEGAAEIARRSRGTPRIANRLLRRVRDFAQ 230 (234)
T ss_pred EEEEECCCCCCCCHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 99852156664777799762112442468999999999999998399959999999999779989999899999999998
Q ss_pred C
Q ss_conf 0
Q 537021.9.peg.4 217 D 217 (369)
Q Consensus 217 ~ 217 (369)
T Consensus 231 ~ 231 (234)
T pfam05496 231 V 231 (234)
T ss_pred H
T ss_conf 7