HHsearch alignment for GI: peg_472 and conserved domain: smart00350
>smart00350 MCM minichromosome maintenance proteins.
Probab=97.52 E-value=0.00055 Score=49.53 Aligned_cols=131 Identities=18% Similarity=0.249 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHHHC-------------CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 92848999999999982-------------87670620107879888899999999961468777886658789997799
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKS-------------GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQ 67 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~-------------~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~ 67 (369)
T Consensus 205 I~G~~~vK~allL~L~GG~~~~~~~g~~~Rg~-ih-iLLvGDPGtgKSqlLk~~~~ia----prsvy----tsG~gsS~a 274 (509)
T smart00350 205 IYGHEDIKKAILLLLFGGVHKNLPDGMKIRGD-IN-ILLLGDPGTAKSQLLKYVEKTA----PRAVY----TTGKGSSAV 274 (509)
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCEECCC-EE-EEEECCCCCCHHHHHHHHHHHC----CCEEE----EECCCCCCC
T ss_conf 23878899999999708876648988504154-14-9984699823629999999858----86068----734445557
Q ss_pred HHHCCCCCCCCCCCCCCCCCHHHH-HH-HHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 997798778222453322334555-66-5554456542046523775115664800167899999721221114665067
Q 537021.9.peg.4 68 AIIRGNHVDVVELDAASHTSIDDV-RE-IIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTE 145 (369)
Q Consensus 68 ~i~~~~~~d~~e~~~~s~~~id~i-r~-l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~ 145 (369)
T Consensus 275 GL-----------Taa--v~rd~~~ge~~leaGAL--VlAD~GiccIDEfdKm~~~dr~alhEaME---QQtisia---- 332 (509)
T smart00350 275 GL-----------TAA--VTRDPETREFTLEGGAL--VLADNGVCCIDEFDKMDDSDRTAIHEAME---QQTISIA---- 332 (509)
T ss_pred CC-----------EEE--EEECCCCCCEEECCCCE--ECCCCCEEEEEEHHHCCHHHHHHHHHHHH---HCEEEEE----
T ss_conf 70-----------689--99817888378725641--20567547852132078778999999997---4877874----
Q ss_pred CCCCCHHHHHHHHHHHCC
Q ss_conf 543303567543332102
Q 537021.9.peg.4 146 IRKIPITVLSRCQRFDLH 163 (369)
Q Consensus 146 ~~~ll~TI~SRcq~~~f~ 163 (369)
T Consensus 333 KaGi~~tL~aR~sVlAAa 350 (509)
T smart00350 333 KAGITTTLNARCSVLAAA 350 (509)
T ss_pred CCCEEEEEECCCEEEEEE
T ss_conf 375179985573599865