RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= 537021.9.peg.472_1
(369 letters)
>gnl|CDD|181656 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau;
Validated.
Length = 598
Score = 619 bits (1599), Expect = e-178
Identities = 218/360 (60%), Positives = 285/360 (79%), Gaps = 1/360 (0%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDV-PTVEF 59
+IGQ+ M++TLTNAF++GRIAQ++ML+G RG+GKTTTARI+AR+LNY+ D PT++
Sbjct: 26 LIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL 85
Query: 60 EGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS 119
G GEHCQAI+ G HVDV+E+DAASHT +DD+REII+ + Y+P+SAR++VYI+DEV MLS
Sbjct: 86 CGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS 145
Query: 120 TAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQ 179
TAAFN LLKTLEEPPPHVKFIFATTEIRK+P+TVLSRCQRFDL RI L ++I
Sbjct: 146 TAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAA 205
Query: 180 EESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDL 239
+E +E + EA+A+IARA++GS RDGLSLLDQAIA ++ +VR ML LADR R++DL
Sbjct: 206 KEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHGAGEVTAEAVRDMLGLADRARVIDL 265
Query: 240 FGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAEN 299
F L++GD+ L EF +QYD+G +P V+L DLAEFTHLVTR+K +P+ A+ SEAE
Sbjct: 266 FEALMRGDVAAALAEFRAQYDAGADPVVVLTDLAEFTHLVTRLKIVPDAAEDPSLSEAER 325
Query: 300 ARALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSPEEIAR 359
R +++K++S+ LSR WQM+LKGI E++G RP+ A EMVLIRLA+A LP+P+E R
Sbjct: 326 TRGAEFAKKLSMRVLSRLWQMLLKGIEEVQGAPRPLAAAEMVLIRLAYAADLPTPDEALR 385
>gnl|CDD|162839 TIGR02397, dnaX_nterm, DNA polymerase III, subunit gamma and tau.
This model represents the well-conserved first ~ 365
amino acids of the translation of the dnaX gene. The
full-length product of the dnaX gene in the model
bacterium E. coli is the DNA polymerase III tau subunit.
A translational frameshift leads to early termination
and a truncated protein subunit gamma, about 1/3 shorter
than tau and present in roughly equal amounts. This
frameshift mechanism is not necessarily universal for
species with DNA polymerase III but appears conserved in
the exterme thermophile Thermus thermophilis.
Length = 355
Score = 401 bits (1034), Expect = e-112
Identities = 152/346 (43%), Positives = 216/346 (62%), Gaps = 6/346 (1%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60
+IGQ+ +++TL NA K+GRIA +Y+ SG RG GKT+ ARI A++LN + P E
Sbjct: 16 VIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALN----CQNGPDGEPC 71
Query: 61 GFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLST 120
E C+ I G+ +DV+E+DAAS+ +DD+REI+D + Y P S +++VYI+DEV MLS
Sbjct: 72 NECESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK 131
Query: 121 AAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQE 180
+AFN LLKTLEEPP HV FI ATTE KIP T+LSRCQRFD RI + D++E KIL +
Sbjct: 132 SAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDK 191
Query: 181 ESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240
E I+ + EA+ +IARA+DGS RD LSLLDQ I+ N I V +L L D ++++L
Sbjct: 192 EGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGNITYEDVNELLGLVDDEKLIELL 251
Query: 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENA 300
++ D L+ +SGV+P L DL E + IK P +L SE E
Sbjct: 252 EAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKTPSNLLAVLESEQEFL 311
Query: 301 RALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLA 346
+ L + ++S+ FL R ++L+ + ++ + P +EM L+RL
Sbjct: 312 KEL--ALKLSLEFLLRLLDILLEALKDLRFSNDPRIWLEMTLLRLL 355
>gnl|CDD|184928 PRK14964, PRK14964, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 491
Score = 350 bits (901), Expect = 2e-97
Identities = 157/364 (43%), Positives = 228/364 (62%), Gaps = 14/364 (3%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60
++GQ +++ L NAF +I QS +L G G+GKTT ARII+ LN + PT +
Sbjct: 15 LVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNC----SNGPTSDPC 70
Query: 61 GFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLST 120
G +C +I NH DV+E+DAAS+TS+DD++ I++ Y PIS++F+VYI+DEV MLS
Sbjct: 71 GTCHNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN 130
Query: 121 AAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQE 180
+AFN LLKTLEEP PHVKFI ATTE++KIP+T++SRCQRFDL +I L+E I ++
Sbjct: 131 SAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKK 190
Query: 181 ESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240
E+IE D E++ +IA S GS R+ L LL+QA N+KI SVR +L D++ + DL
Sbjct: 191 ENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRDLLGCVDKHILEDLV 250
Query: 241 GYLIKGDI---INVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEA 297
++ GD +NV +E + NP +IL + + + + I + D LL +
Sbjct: 251 EAILLGDAQSALNVFRELCNTS----NPVIILEGMLQIIYEICYFS-ITKEIDFLLGEDL 305
Query: 298 ENARALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSPEEI 357
++ K S FLSR WQM+LKGI E++ + +A EM++IRL + LPSP++I
Sbjct: 306 IT--RIKSLKIGSTIFLSRLWQMLLKGIQEVKSSTCVKQAAEMMIIRLCYLSDLPSPQQI 363
Query: 358 ARYI 361
+ I
Sbjct: 364 IKKI 367
>gnl|CDD|180131 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 320 bits (823), Expect = 3e-88
Identities = 137/364 (37%), Positives = 208/364 (57%), Gaps = 27/364 (7%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60
++GQ+ + KTL NA K G+I+ +Y+ SG RG GKT+ A+I A+++N P E E
Sbjct: 18 VVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECE 77
Query: 61 GFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLST 120
C+AI G+ +DV+E+DAAS+ +D++R+I D++ Y P A+++VYI+DEV MLST
Sbjct: 78 ----ICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST 133
Query: 121 AAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQE 180
AFN LLKTLEEPP HV FI ATTE KIP T+LSRCQRFD RIS+ D++E IL +
Sbjct: 134 GAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDK 193
Query: 181 ESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240
E IE++ EA+ +IARA++G RD LS+LDQAI+ + K+ + + + DL
Sbjct: 194 EGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKVTYEDALEVTGSVSQEALDDLV 253
Query: 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENA 300
+++GD+ L+ D G +P+ + DL I Y + D LL +
Sbjct: 254 DAIVEGDVAKALKILEELLDEGKDPNRFIEDL---------IYY---LRDLLLVKTSPEL 301
Query: 301 RAL-----------QYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHAV 349
L + S+++ I L R ++ +I+ ++P +E+ L++L
Sbjct: 302 EILDESTENDELFKELSEKLDIERLYRMIDILNDAQQQIKWTNQPRIYLEVALVKLCEQA 361
Query: 350 QLPS 353
Sbjct: 362 AASP 365
>gnl|CDD|184929 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 305 bits (783), Expect = 1e-83
Identities = 135/347 (38%), Positives = 200/347 (57%), Gaps = 4/347 (1%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60
+ GQ+ + +TL NA +GR+A +++ +G RG+GKT+TARI+A++LN + T E
Sbjct: 18 LTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQG----LTAEPC 73
Query: 61 GFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLST 120
C I G VDV E+D AS+T +DD+RE+ + + Y P +R++++I+DEV MLST
Sbjct: 74 NVCPPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST 133
Query: 121 AAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQE 180
AFN LLKTLEEPPPHVKFIFATTE K+PIT+LSRCQRFD RI + +++ I +
Sbjct: 134 NAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQ 193
Query: 181 ESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240
E I A+A++AR DGS RD LS LDQ +A C D + V +L + DR ++D+
Sbjct: 194 EGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVAELLGVVDRRLLLDIS 253
Query: 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENA 300
+ D +L+ + G N +L + + ++ + E D L SEAE A
Sbjct: 254 AAVFGRDTRALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLRAVGEPGDLLDLSEAELA 313
Query: 301 RALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAH 347
+ L R ++L+ E+ S P +EM L+++A
Sbjct: 314 ELRAQAAAADAADLQRHLTLLLRAEGEMAHASFPRLVLEMALLKMAT 360
>gnl|CDD|181191 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 301 bits (772), Expect = 2e-82
Identities = 143/369 (38%), Positives = 216/369 (58%), Gaps = 33/369 (8%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60
++GQ+ ++ L NA GR+ +Y+ SGTRG+GKTT AR++A+ LN +T P
Sbjct: 18 VVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPC---- 73
Query: 61 GFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLST 120
G ++C+ I +G VD++E+DAAS T ++D RE++D + Y P RF+VY++DEV MLS
Sbjct: 74 GECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR 133
Query: 121 AAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQE 180
+FN LLKTLEEPP HVKF+ ATT+ +K+P+T+LSRC +F L + + + + ILQ
Sbjct: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQA 193
Query: 181 ESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240
E I F+P A+ ++ARA+DGS RD LSL DQAIA N ++ T V ML D ++ + L
Sbjct: 194 EQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQVTTDDVSAMLGTLDDDQALSLL 253
Query: 241 GYLIKGD---IINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEA 297
L++GD ++ ++ + + + G + +L +L E H RI MA LL +
Sbjct: 254 EALVEGDGERVMALINQLAER---GPDWEGLLVELLELLH---RI----AMAQ-LLPAAL 302
Query: 298 ENARALQYSKEVSITFLSR---------FWQMILKGISEIEGFSRPMEAVEMVLIR-LA- 346
+N E+ + L+R ++Q +L G ++ VEM L+R LA
Sbjct: 303 DND---MADIELRLRELARTLPPEDVQLYYQTLLIGRKDLPLAPDRRMGVEMTLLRMLAF 359
Query: 347 H-AVQLPSP 354
H A LP P
Sbjct: 360 HPAAPLPEP 368
>gnl|CDD|184914 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 282 bits (722), Expect = 1e-76
Identities = 145/373 (38%), Positives = 211/373 (56%), Gaps = 16/373 (4%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60
++GQ+ +++TL NA GR+A +Y+ +G RG+GKT+TARI+A+++N T P
Sbjct: 18 LVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTND---PKGRPC 74
Query: 61 GFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLST 120
G E C+AI G+ VDV+E+DAASHTS+DD REII+++ ++P AR++VYI+DEV MLST
Sbjct: 75 GTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST 134
Query: 121 AAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQE 180
AAFN LLKTLEEPPPH FI ATTE+ K+P T+LSRCQRFD HR S+ D+ KI
Sbjct: 135 AAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAA 194
Query: 181 ESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240
E I +P A+ IARA+ GS RD +LL Q +I S V+ +L ++ + L
Sbjct: 195 EGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLSQVQSLLGISGDEEVKALA 254
Query: 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENA 300
L+ D+ L+ ++ G + DL E+ V + + L + E A
Sbjct: 255 EALLAKDLKAALRTLNAVAADGADLRQFTRDLVEYLRQVMLLNSGAD-RSLLDLTADEKA 313
Query: 301 RALQYSKEVSITFLSRFWQMILKGISEIEGFSR-------PME-AVEMVLIRLAHAVQLP 352
+ S+ ++ L++ W +K S+++ R P+E AV L+ A Q
Sbjct: 314 ALQKVSQIANLEALTK-W---VKAFSQLDFQLRTTSYGQLPLELAVIEALLVPVPAPQPA 369
Query: 353 SPEEIARYIVEEK 365
P A V
Sbjct: 370 KPTAAAPSPVRPT 382
>gnl|CDD|180643 PRK06645, PRK06645, DNA polymerase III subunits gamma and tau;
Validated.
Length = 507
Score = 280 bits (718), Expect = 3e-76
Identities = 135/355 (38%), Positives = 220/355 (61%), Gaps = 5/355 (1%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60
+ GQ+ ++K L+ + R+A Y+L+G RG+GKTT+ARIIA+++N + T++
Sbjct: 23 LQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC 82
Query: 61 GFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLST 120
+C + NH D++E+DAAS TS+DD+R II+ YKP+ + +++I+DEV MLS
Sbjct: 83 EQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK 142
Query: 121 AAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQE 180
AFN LLKTLEEPPPH+ FIFATTE++KIP T++SRCQR+DL R+S ++ +L I ++
Sbjct: 143 GAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQ 202
Query: 181 ESIEFDPEAVAMIARASDGSARDGLSLLDQAI---ARCNDKIVTSSVRLMLALADRNRIM 237
E+++ D EA+ +IA S+GSARD +S+LDQA A+ ++ I + ML L D + I+
Sbjct: 203 ENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVII 262
Query: 238 DLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEA 297
+ Y+I + + + Y S VN + + +++F + ++K +P +L E+
Sbjct: 263 EFVEYIIHRETEKAINLINKLYGSSVNLEIFIESVSDFIAYLNKVKMLPNY--SLPIYES 320
Query: 298 ENARALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQLP 352
N R ++S+ LS WQ+ KG+ EI+ + EM++I+ ++ LP
Sbjct: 321 FNDRTKSILDKISLPHLSILWQIYNKGVGEIKISYNQLTETEMLVIKSIYSTSLP 375
>gnl|CDD|184933 PRK14969, PRK14969, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 527
Score = 280 bits (717), Expect = 5e-76
Identities = 131/328 (39%), Positives = 196/328 (59%), Gaps = 7/328 (2%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60
++GQ+ +++ LTNA + R+ +Y+ +GTRG+GKTT ARI+A+SLN +T P
Sbjct: 18 LVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPC---- 73
Query: 61 GFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLST 120
G C I G VD++E+DAAS+T +D +RE++D Y P RF+VYI+DEV MLS
Sbjct: 74 GVCSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK 133
Query: 121 AAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQE 180
+AFN +LKTLEEPP HVKFI ATT+ +KIP+TVLSRC +F+L ++ ++ IL++
Sbjct: 134 SAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQ 193
Query: 181 ESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240
E+I FD A+ ++ARA+ GS RD LSLLDQAIA + S VR ML D++ + L
Sbjct: 194 ENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVNESEVRAMLGAIDQDYLFALL 253
Query: 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENA 300
L+ D +L + + ++ L DLA H + + +P+ E
Sbjct: 254 EALLAQDGAALLAIADAMEERSLSFDAALQDLAALLHRLAIAQTVPDSIAD---DLPERD 310
Query: 301 RALQYSKEVSITFLSRFWQMILKGISEI 328
R L +K +S + ++Q+ L G ++
Sbjct: 311 RLLDLAKRLSPEDIQLYYQIALHGRRDL 338
>gnl|CDD|184925 PRK14961, PRK14961, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 363
Score = 268 bits (688), Expect = 1e-72
Identities = 128/351 (36%), Positives = 202/351 (57%), Gaps = 5/351 (1%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60
+IGQK ++ ++N GRI +++LSGTRG+GKTT AR++A+SLN + P +
Sbjct: 18 IIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCI 77
Query: 61 GFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLST 120
C+ I +G +D++E+DAAS T ++++REI+D IYY P +RF+VY++DEV MLS
Sbjct: 78 ----ICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR 133
Query: 121 AAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQE 180
+FN LLKTLEEPP H+KFI ATT++ KIP T+LSRC +F L IS + IL +
Sbjct: 134 HSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIK 193
Query: 181 ESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240
ESI+ D A+ +IA + GS RD L+LL+ AI I +V ML L + + L
Sbjct: 194 ESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNVTDMLGLLNEKQSFLLT 253
Query: 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENA 300
L+K D + + G+ IL ++ F H ++ + P++ +T ++ +
Sbjct: 254 DALLKKDSKKTMLLLNKISSIGIEWENILIEMLRFLHHISMSQSFPKIWNT-IFIKNYKN 312
Query: 301 RALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQL 351
+ + ++ T + +Q++L G E++ VEM L+R +A+
Sbjct: 313 QIQKIAQNNKKTNIQLCYQILLNGRKELKFAPDQKIGVEMTLLRAINAITK 363
>gnl|CDD|181430 PRK08451, PRK08451, DNA polymerase III subunits gamma and tau;
Validated.
Length = 535
Score = 266 bits (683), Expect = 5e-72
Identities = 113/260 (43%), Positives = 166/260 (63%), Gaps = 7/260 (2%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60
+IGQ+ + KTL+ A + R+A +Y+ SG RG GKT++ARI AR+L + P
Sbjct: 16 LIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPC---- 71
Query: 61 GFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLST 120
CQ+ + H+D++E+DAAS+ IDD+RE+I+Q YKP ARF+++I+DEV ML+
Sbjct: 72 DTCIQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK 131
Query: 121 AAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQE 180
AFN LLKTLEEPP +VKFI ATT+ K+P T+LSR Q F +I +I IL++
Sbjct: 132 EAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEK 191
Query: 181 ESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240
E + ++PEA+ ++AR+ +GS RD L+LLDQAI C + I S V ML L D +++ D F
Sbjct: 192 EGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVADMLGLLDPSKLEDFF 251
Query: 241 GYLIKGD---IINVLQEFSS 257
++ D + +L+E
Sbjct: 252 QAILNQDKEKLFELLKELED 271
>gnl|CDD|184924 PRK14960, PRK14960, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 702
Score = 260 bits (666), Expect = 3e-70
Identities = 141/357 (39%), Positives = 215/357 (60%), Gaps = 7/357 (1%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60
++GQ + + L++A + GR+ +Y+ +GTRG+GKTT ARI+A+ LN +T P
Sbjct: 17 LVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPC---- 72
Query: 61 GFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLST 120
C+A+ G +D++E+DAAS T ++D RE++D + Y P RF+VY++DEV MLST
Sbjct: 73 EVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST 132
Query: 121 AAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQE 180
+FN LLKTLEEPP HVKF+FATT+ +K+PITV+SRC +F L +++ ++ + IL++
Sbjct: 133 HSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEK 192
Query: 181 ESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240
E I D +A+ IA ++ GS RD LSL DQAIA + V+ ML L DR I DL
Sbjct: 193 EQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLGLIDRTIIYDLI 252
Query: 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENA 300
+ + V Q ++ S++L L H + ++Y+PE+ L YSE NA
Sbjct: 253 LAVHQNQREKVSQLLLQFRYQALDVSLVLDQLISTLHELALLQYLPELG--LKYSEEINA 310
Query: 301 RALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSPEEI 357
+ LQ SK +S L ++Q+ KG S+++ + EM ++RL A + +P EI
Sbjct: 311 KILQLSKLISAQDLQLYYQIACKGRSDLQLAVTQEQGFEMCVLRLL-AFRPLAPNEI 366
>gnl|CDD|184912 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 257 bits (660), Expect = 2e-69
Identities = 122/276 (44%), Positives = 177/276 (64%), Gaps = 5/276 (1%)
Query: 2 IGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEG 61
+GQ+ + TL NA S RIA +Y+ +G RG GKT++ARI+A+SLN + D PT E G
Sbjct: 19 VGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNS--DKPTPEPCG 76
Query: 62 FGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTA 121
E C+AI GN +DV+E+DAAS+T +D++RE+I++ + P+ AR++VY++DE MLSTA
Sbjct: 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTA 136
Query: 122 AFNGLLKTLEEPPPHVKFIFATTEI-RKIPITVLSRCQRFDLHRISIGDLIELFTKILQE 180
AFN LLKTLEEPPP V F+ ATT+ R +P T++SRCQRFD RI + +++ ++I ++
Sbjct: 137 AFNALLKTLEEPPPRVVFVLATTDPQRVLP-TIISRCQRFDFRRIPLEAMVQHLSEIAEK 195
Query: 181 ESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240
ESIE +PEA+ ++A+ S G RD SLLDQ ++ I +V +L +++L
Sbjct: 196 ESIEIEPEALTLVAQRSQGGLRDAESLLDQ-LSLLPGPITPEAVWDLLGAVPEQDLLNLL 254
Query: 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFT 276
L D ++L D G P IL LA F
Sbjct: 255 KALASNDPESLLDSCRQLLDRGREPLAILQGLAAFY 290
>gnl|CDD|184913 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 944
Score = 255 bits (654), Expect = 1e-68
Identities = 138/368 (37%), Positives = 214/368 (58%), Gaps = 13/368 (3%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60
M+GQ ++ LTNA R+ +Y+ +GTRG+GKT+ AR+ A+ LN + P
Sbjct: 18 MVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPC---- 73
Query: 61 GFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLST 120
G C I +G VD++E+DAAS T +DD RE++D + Y+P RF+VY++DEV MLS
Sbjct: 74 GVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR 133
Query: 121 AAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQE 180
++FN LLKTLEEPP HVKF+ ATT+ +K+P+TVLSRC +F+L ++ ++ IL +
Sbjct: 134 SSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ 193
Query: 181 ESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240
E + F+ EA+ ++A+A++GS RD LSL DQAIA +++ + V+ ML D ++ L
Sbjct: 194 EQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQVMLTQVQTMLGSIDEQHVIALL 253
Query: 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENA 300
L DI ++Q + G + +L L E H +T ++ P A LYSE A
Sbjct: 254 KALTDADIGVLMQTCAQVLAFGADAQEVLRSLLELLHQITLTQFAPAAAQQSLYSEQIRA 313
Query: 301 RALQYSKE-VSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSPEEIAR 359
A Q S E V + ++Q++L G ++ P +EM L+R AV + + R
Sbjct: 314 FAEQLSPEQVQL-----YYQILLTGRKDLPHAPDPKSGLEMALLR---AVAFVPEKPVKR 365
Query: 360 YIVEEKKK 367
+ V++ +
Sbjct: 366 WQVDDPAE 373
>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 624
Score = 254 bits (650), Expect = 2e-68
Identities = 134/358 (37%), Positives = 195/358 (54%), Gaps = 5/358 (1%)
Query: 3 GQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGF 62
GQ+ + L+ A + R+A +Y+ SGTRG+GKTT ARI A++LN +TA PT E
Sbjct: 20 GQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETA----PTGEPCNT 75
Query: 63 GEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAA 122
E C+ + +G HVDVVE+D AS+ IDD + + + I Y P+ R++V+I+DE ML+ A
Sbjct: 76 CEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREA 135
Query: 123 FNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQEES 182
FN LLKTLEEPP V F+ ATTE K P+T++SRCQ F R+S L TK+L E
Sbjct: 136 FNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREG 195
Query: 183 IEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLFGY 242
+++DP AV +IAR + GS RD +SLL Q +A ++ R +L LA + + L
Sbjct: 196 VDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGVLGLAGQELFLRLMEA 255
Query: 243 LIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARA 302
L D + V D GV+ L +L + ++ E A L + AR
Sbjct: 256 LAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGEAALASLDLPEDEARQ 315
Query: 303 -LQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSPEEIAR 359
L ++K + WQM L+G + P A+E++L+ LA +L E +
Sbjct: 316 WLGWAKRFEPAHIHACWQMTLEGQRRVLTSLEPAMALELLLLNLAMLPRLMPVESLRP 373
>gnl|CDD|180790 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 252 bits (646), Expect = 7e-68
Identities = 129/318 (40%), Positives = 193/318 (60%), Gaps = 24/318 (7%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60
++GQ+ +++ LT+A GR+ +Y+ +GTRG+GKTT +RI A++LN +T P
Sbjct: 18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPC---- 73
Query: 61 GFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLST 120
G C+ I G VD VE+DAAS+ +D++ ++++ Y P+ ARF+VY++DEV ML+
Sbjct: 74 GVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN 133
Query: 121 AAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQE 180
AFN +LKTLEEPPPHVKFI ATT+ +KIP+TVLSRC +F+L ++ G ++ +IL E
Sbjct: 134 HAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGE 193
Query: 181 ESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240
E I F+P+A+ ++ARA+ GS RD LSL DQAIA +++ ++V ML D+ ++ L
Sbjct: 194 ERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLL 253
Query: 241 GYLIKGD---IINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYI-----------P 286
L GD I+ V E + + S S L DLA H RI + P
Sbjct: 254 DALAAGDGPEILAVADEMALRSLSF---STALQDLASLLH---RIAWAQFAPASVLDEWP 307
Query: 287 EMADTLLYSEAENARALQ 304
E AD ++E + +Q
Sbjct: 308 EAADLRRFAELLSPEQVQ 325
>gnl|CDD|184915 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 252 bits (646), Expect = 1e-67
Identities = 135/358 (37%), Positives = 219/358 (61%), Gaps = 27/358 (7%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYK--------TAHI 52
M+GQ+ +++ LTNA R+ +Y+ +GTRG+GKTT +RI+A+SLN + TA
Sbjct: 18 MVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA-- 75
Query: 53 DVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIM 112
P G + C+ I G VD ELDAAS+ +D+V+++++Q YKP+ RF+V+++
Sbjct: 76 -TPC----GVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMI 130
Query: 113 DEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIE 172
DEV ML+ AFN +LKTLEEPP ++KF+ ATT+ +K+P+TVLSRC +F+L ++ ++E
Sbjct: 131 DEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLE 190
Query: 173 LFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALAD 232
T++L E++ +P+A+ ++ARA+ GS RD LSL DQAIA + ++ ++VR ML D
Sbjct: 191 HLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVD 250
Query: 233 RNRIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTL 292
R+ + L L +GD V++ +G++ + L ++A + ++ +P+ A
Sbjct: 251 RSHVFRLIDALAQGDGRTVVETADELRLNGLSAASTLEEMAAVLQRMAVLQAVPQAAAAA 310
Query: 293 LYSE-AENAR--ALQYSKEVSITFLSRFWQMILKGISEIEGFSRPME--AVEMVLIRL 345
E AE AR AL + E + + + L G +E+ G + P E A+ MVL+RL
Sbjct: 311 TDPEAAEVARLAALMPADETQL-----LYSICLHGRAEL-GLA-PDEYAALTMVLLRL 361
>gnl|CDD|184917 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 486
Score = 247 bits (631), Expect = 5e-66
Identities = 105/263 (39%), Positives = 154/263 (58%), Gaps = 11/263 (4%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60
+IGQ+ +++ L NA K R++ +Y+ +G RG GKTT ARI+A+ LN E E
Sbjct: 18 VIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNP------QEGE 71
Query: 61 GFG--EHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQML 118
G E+C I +G+ D++E+DAAS+ IDD+R + D + Y PI +++VYI+DE ML
Sbjct: 72 PCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHML 131
Query: 119 STAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKIL 178
+ AFN LLKTLEEPPP FI TTE KIP T+LSRCQRF + + + E +I
Sbjct: 132 TKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRIC 191
Query: 179 QEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMD 238
EE IE++ +A+ ++A+AS+G RD SLLDQA K+ V L + + +
Sbjct: 192 NEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVVEEFLGIVSQESVRK 251
Query: 239 LFGYLIKGDI---INVLQEFSSQ 258
L++ D+ I L+ +
Sbjct: 252 FLNLLLESDVDEAIKFLRTLEEK 274
>gnl|CDD|180856 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau;
Validated.
Length = 725
Score = 246 bits (629), Expect = 9e-66
Identities = 120/357 (33%), Positives = 205/357 (57%), Gaps = 34/357 (9%)
Query: 2 IGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLN--YKTAHIDVPTVEF 59
+GQ +++TL N KS +I+ +Y+ SG RG GKT+ A+I A +LN +KT +
Sbjct: 21 VGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLL------- 73
Query: 60 EGFGEHCQAIIRG--NHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQM 117
E CQ I N +D++E+DAAS+ +D++RE+I+ + P +++++YI+DEV M
Sbjct: 74 ----EPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHM 129
Query: 118 LSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKI 177
LS +AFN LLKTLEEPP HV FI ATTE+ KIP+T+LSR QRF+ RIS +++ I
Sbjct: 130 LSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFI 189
Query: 178 LQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIM 237
L++E+I ++ A+ +IA+ S GS RD LS+ +Q N+KI +V + L ++
Sbjct: 190 LEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVEELFGLVSNENLI 249
Query: 238 DLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEA 297
+L L DI VL + + G++P ++L L I + + +++++
Sbjct: 250 NLLNLLYSKDIKEVLNILNQIKEQGIDPELLLISL------------INLVKEFIIFNKT 297
Query: 298 ENARALQYSKE-------VSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAH 347
++ L+Y E + F +F +++ + +++ P + +E+++I+L
Sbjct: 298 KDNSLLEYYSEEDLEKLKIDDDFAYKFIEILFDLLKDLKISDNPNDTLEILIIKLLA 354
>gnl|CDD|169554 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau;
Validated.
Length = 709
Score = 245 bits (627), Expect = 1e-65
Identities = 128/369 (34%), Positives = 211/369 (57%), Gaps = 7/369 (1%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60
++GQ+ ++K L NA GR+ +Y+L+GTRG+GKTT ARI+A+SLN + A P
Sbjct: 18 LVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPC---- 73
Query: 61 GFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLST 120
G + C I G +VD++E+DAAS+T ID++RE+++ Y P + +++VYI+DEV MLS
Sbjct: 74 GVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK 133
Query: 121 AAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQE 180
+AFN +LKTLEEPP HVKFI ATT+ K+P+TVLSRC +F L ++ + + +L
Sbjct: 134 SAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDS 193
Query: 181 ESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240
E I ++P A+ ++ RA+ GS RD LSLLDQAIA + K+ + VR M+ D+ + +L
Sbjct: 194 EKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELL 253
Query: 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENA 300
+I D +L + V L +LA + I+ +P L + + ++
Sbjct: 254 TGIINQDGAALLAKAQEMAACAVGFDNALGELAILLQQLALIQAVP---SALAHDDPDSD 310
Query: 301 RALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSPEEIARY 360
+ ++ +S + ++Q+ + G ++ M L+R+ L + A
Sbjct: 311 ILHRLAQTISGEQIQLYYQIAVHGKRDLSLAPDEYAGFMMTLLRMLAFAPLAAASCDANA 370
Query: 361 IVEEKKKKT 369
++E + ++
Sbjct: 371 VIENTELQS 379
>gnl|CDD|180523 PRK06305, PRK06305, DNA polymerase III subunits gamma and tau;
Validated.
Length = 451
Score = 245 bits (627), Expect = 2e-65
Identities = 133/364 (36%), Positives = 192/364 (52%), Gaps = 31/364 (8%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60
++GQ ++ L NA + R A +Y+ SG RG GKTT ARI A++LN + PT + E
Sbjct: 19 ILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQN-----PTEDQE 73
Query: 61 GFGE--HCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQML 118
+ C+ I G +DV+E+D ASH I+D+R+I + + + P +R+++YI+DEV ML
Sbjct: 74 PCNQCASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHML 133
Query: 119 STAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKIL 178
+ AFN LLKTLEEPP HVKF ATTEI KIP T+LSRCQ+ L RI +I+ I
Sbjct: 134 TKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIA 193
Query: 179 QEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMD 238
++E IE EA+ IARA+ GS RD SL D + + SV L L ++ +
Sbjct: 194 KQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDSVAKALGLLSQDSLYT 253
Query: 239 LFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLL--YSE 296
L + + L+ + +SGV P+ LHDL F + LL Y++
Sbjct: 254 LDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLTLF------------FRNILLKQYNK 301
Query: 297 AENARALQYSKEVS---ITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPS 353
++ A +YS E I FL + I I E +E V+I L Q P+
Sbjct: 302 QLSSVATKYSSEQLLEIIDFLGESAKHIQLTIFE-------KTFLETVIIHLIRIYQRPT 354
Query: 354 PEEI 357
++
Sbjct: 355 LSQL 358
>gnl|CDD|183438 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 244 bits (623), Expect = 4e-65
Identities = 112/288 (38%), Positives = 174/288 (60%), Gaps = 1/288 (0%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVP-TVEF 59
++GQ+ +++ LT+A + R+ +Y+ +GTRG+GKTT +RI+A+SLN A + T +
Sbjct: 18 LVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP 77
Query: 60 EGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS 119
G C I G VD +E+DAAS+ +D++ +++D+ Y P + RF+VY++DEV ML+
Sbjct: 78 CGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT 137
Query: 120 TAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQ 179
AFN +LKTLEEPP HVKFI ATT+ +KIP+TVLSRC +F+L ++ G ++ IL
Sbjct: 138 NHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILG 197
Query: 180 EESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDL 239
EE I + A+ ++A+A+ GS RD LSL DQAIA + +VR ML D++ ++ L
Sbjct: 198 EEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNVSEEAVRGMLGAIDQSYLVRL 257
Query: 240 FGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPE 287
L D +L ++ + L DLA + + +P
Sbjct: 258 LDALAAEDGAALLAIADEMAGRSLSFAGALQDLASLLQKIALAQVVPA 305
>gnl|CDD|180644 PRK06647, PRK06647, DNA polymerase III subunits gamma and tau;
Validated.
Length = 563
Score = 240 bits (614), Expect = 4e-64
Identities = 110/275 (40%), Positives = 167/275 (60%), Gaps = 4/275 (1%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60
+ GQ +++TL ++ +S +IA +Y+ SG RG+GKT++AR AR LN PT
Sbjct: 18 LEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNG----PTPMPC 73
Query: 61 GFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLST 120
G C++I N +DV+E+D AS+TS+ DVR+I ++I + P S+R+RVYI+DEV MLS
Sbjct: 74 GECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN 133
Query: 121 AAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQE 180
+AFN LLKT+EEPPP++ FIFATTE+ K+P T+ SRCQ F+ +S+ + + K+ E
Sbjct: 134 SAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLE 193
Query: 181 ESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240
+ I+++ EA+ IA S GS RD +L DQ ++ + I +R + L + L
Sbjct: 194 DQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQIRSKMGLTGDEFLEKLA 253
Query: 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEF 275
++ D +L S + SGV+ L D EF
Sbjct: 254 SSILNEDAKELLCVLDSVFLSGVSVEQFLLDCIEF 288
>gnl|CDD|180308 PRK05896, PRK05896, DNA polymerase III subunits gamma and tau;
Validated.
Length = 605
Score = 239 bits (612), Expect = 7e-64
Identities = 122/325 (37%), Positives = 183/325 (56%), Gaps = 24/325 (7%)
Query: 2 IGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLN-YKTAHIDVPTVEFE 60
IGQ+ + K L NA + ++ +Y+ SG RGIGKT+ A+I A+++N D
Sbjct: 19 IGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCC----- 73
Query: 61 GFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLST 120
C++I VD+VELDAAS+ +D++R IID I Y P + +++VYI+DE MLST
Sbjct: 74 NSCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST 133
Query: 121 AAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQE 180
+A+N LLKTLEEPP HV FIFATTE +KIP+T++SRCQR++ +++ +L EL I ++
Sbjct: 134 SAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKK 193
Query: 181 ESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240
E I+ + A+ IA +DGS RDGLS+LDQ N +I + L D N+ ++L
Sbjct: 194 EKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDINKTFGLVDNNKKINLI 253
Query: 241 GYLIKGDI---INVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEA 297
+ K DI N++ E G+N DL I + D L+Y +
Sbjct: 254 ELIQKNDIEELRNLINEL---ESKGINFEAFCRDL------------INLLIDLLVYQKT 298
Query: 298 ENARALQYSKEVSITFLSRFWQMIL 322
+N L+ + + L+ Q +L
Sbjct: 299 KNINLLKKLSKEQLKTLNLEKQKLL 323
>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 504
Score = 239 bits (611), Expect = 9e-64
Identities = 105/274 (38%), Positives = 161/274 (58%), Gaps = 6/274 (2%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60
++GQ+ + + L A + GR+ +Y+ SG RG+GKTTTAR+IA ++N + P
Sbjct: 16 VVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC-SGEDPKPC---- 70
Query: 61 GFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLST 120
G E C A+ RG H DV+E+DAAS+ S++DVR++ +++ P+ +VYI+DE M+S
Sbjct: 71 GECESCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSK 130
Query: 121 AAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQE 180
+AFN LLKTLEEPP HV FI ATTE K+P T+LSR Q F R++ ++ ++L+
Sbjct: 131 SAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEA 190
Query: 181 ESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240
E E +PEA+ ++AR +DG+ RD SLL++ +A + V L L + R+ +
Sbjct: 191 EGREAEPEALQLVARLADGAMRDAESLLERLLA-LGTPVTRKQVEEALGLPPQERLRGIA 249
Query: 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAE 274
L +GD L + Y G ++ L E
Sbjct: 250 AALAQGDAAEALSGAAQLYRDGFAARTLVEGLLE 283
>gnl|CDD|184922 PRK14958, PRK14958, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 509
Score = 228 bits (581), Expect = 2e-60
Identities = 132/345 (38%), Positives = 204/345 (59%), Gaps = 9/345 (2%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60
+IGQ P+++ L+NA + +Y+ +GTRG+GKTT +RI+A+ LN + P + E
Sbjct: 18 VIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCE 77
Query: 61 GFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLST 120
+C+ I G D+ E+DAAS T ++D RE++D I Y P RF+VY++DEV MLS
Sbjct: 78 ----NCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG 133
Query: 121 AAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQE 180
+FN LLKTLEEPP HVKFI ATT+ K+P+TVLSRC +F L ++ + +L+E
Sbjct: 134 HSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKE 193
Query: 181 ESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240
E++EF+ A+ ++ARA++GS RD LSLLDQ+IA N K++ + V+ ML + + D+
Sbjct: 194 ENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDIL 253
Query: 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENA 300
L +L + + GV+ S L DL H + I+ +PE L+ +++E
Sbjct: 254 EALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVPE---ALIENDSEQL 310
Query: 301 RALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRL 345
R Q +K + + F+Q+ L G ++ P EM L+R+
Sbjct: 311 R--QLAKLLDREDVQLFYQIGLIGQRDLAYSPTPQTGFEMTLLRM 353
>gnl|CDD|184935 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 227 bits (581), Expect = 3e-60
Identities = 106/277 (38%), Positives = 158/277 (57%), Gaps = 7/277 (2%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60
++GQ+ + TL NA + ++A +Y+ G RG+GKTT ARI A+++N + T + E
Sbjct: 19 VVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQN-----LTADGE 73
Query: 61 GFG--EHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQML 118
E C A ++ ELDAAS+ S+DD+R +I+Q+ P ++++YI+DEV ML
Sbjct: 74 ACNECESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHML 133
Query: 119 STAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKIL 178
S AAFN LKTLEEPP + FI ATTE KI T+LSRCQ FD +RI + D++ +
Sbjct: 134 SQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVA 193
Query: 179 QEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMD 238
+E I +PEA+ +IA+ +DG RD LS+ DQ ++ I SV L + D +
Sbjct: 194 SKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKSVIENLNILDYDYYFR 253
Query: 239 LFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEF 275
L L+ G + + L F + G + S + LA
Sbjct: 254 LTDALLAGKVSDSLLLFDEILNKGFDGSHFITGLASH 290
>gnl|CDD|184926 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 472
Score = 221 bits (566), Expect = 1e-58
Identities = 106/274 (38%), Positives = 158/274 (57%), Gaps = 4/274 (1%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60
++GQ + K + NA K I+ +Y+ +G RG GKTT ARI+A+SLN + P E
Sbjct: 16 VVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR 75
Query: 61 GFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLST 120
C++I G +DV+ELDAAS+ ID++R+I D + Y+P+ +++VYI+DEV ML+
Sbjct: 76 A----CRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK 131
Query: 121 AAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQE 180
AFN LLKTLEEPP HV F+ ATT + K+P T++SRCQ + IS +I+ ++ +
Sbjct: 132 EAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEA 191
Query: 181 ESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240
E IE D EA++ IA+ + G RD L++L+Q KI +V L L + D
Sbjct: 192 EGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALGLIPIEVVRDYI 251
Query: 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAE 274
+ GD+ V Y SG + V++ E
Sbjct: 252 NAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIE 285
>gnl|CDD|184920 PRK14956, PRK14956, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 484
Score = 215 bits (548), Expect = 2e-56
Identities = 115/300 (38%), Positives = 168/300 (56%), Gaps = 11/300 (3%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60
+I Q I L NA KSG+I +Y+ G RG+GKTT ARI+A+ LN + + P E
Sbjct: 20 VIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT 79
Query: 61 GFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLST 120
C I +G DV+E+DAAS+ I+++RE+ D + + P+ +++VYI+DEV ML+
Sbjct: 80 S----CLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD 135
Query: 121 AAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQE 180
+FN LLKTLEEPP H+ FI ATTE KIP T+LSRCQ F ++ + L + K+ +
Sbjct: 136 QSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKI 195
Query: 181 ESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240
E++++D E + IA+ DGS RD LS ++QAI + K+ +R M+ +
Sbjct: 196 ENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGYHGIEFLTSFI 255
Query: 241 GYLIKGD-IINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAEN 299
LI D L+ S Y G + L D EFTH + I+ D+L E+ N
Sbjct: 256 KSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSIEFTHTLNLIR------DSLADRESVN 309
>gnl|CDD|184916 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 584
Score = 212 bits (542), Expect = 9e-56
Identities = 122/350 (34%), Positives = 188/350 (53%), Gaps = 9/350 (2%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60
++GQ+ + + L++A +GRI +Y+ SG RG GKT++ARI+ARSLN PT
Sbjct: 15 VVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQG----PTATPC 70
Query: 61 GFGEHCQAIIRG--NHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQML 118
G E C A+ +DVVELDAASH +DD RE+ D+ +Y P +R+R++I+DE M+
Sbjct: 71 GVCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMV 130
Query: 119 STAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKIL 178
+TA FN LLK +EEPP H+ FIFATTE K+ T+ SR + + + L +I
Sbjct: 131 TTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARIC 190
Query: 179 QEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRL-MLALADRNRIM 237
++E + D ++ RA GS RD LS+LDQ +A D VT L +L D I
Sbjct: 191 EQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYQRALGLLGATDVALID 250
Query: 238 DLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEA 297
D L D + S D+G +P DL E + ++ +P+ A +
Sbjct: 251 DAVDALAADDAAALFGAIESVIDAGHDPRRFATDLLERFRDLIVLQAVPDAAARGVVDAP 310
Query: 298 ENA--RALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRL 345
E+ R + + + + L+R+ +++ G+ E+ G + P +E+V RL
Sbjct: 311 EDVLERMREQAARIGLATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360
>gnl|CDD|184934 PRK14970, PRK14970, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 367
Score = 211 bits (538), Expect = 3e-55
Identities = 124/354 (35%), Positives = 188/354 (53%), Gaps = 33/354 (9%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60
++GQ + TL NA ++ +AQ+ + G RG+GKTT ARI+AR +N D P +F
Sbjct: 19 VVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKIN--QPGYDDPNEDFS 76
Query: 61 GFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLST 120
++ ELDAAS+ S+DD+R +IDQ+ P + ++++YI+DEV MLS+
Sbjct: 77 --------------FNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS 122
Query: 121 AAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQE 180
AAFN LKTLEEPP H FI ATTE KI T+LSRCQ FD RI+I D+ E I +
Sbjct: 123 AAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVK 182
Query: 181 ESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240
E I+F+ +A+ +IA+ +DG+ RD LS+ D+ + C I +V L + D + +++
Sbjct: 183 EGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYINVT 242
Query: 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAE-FTHLVTRIKYIPEMADTLLYSEAEN 299
+++ I +L F+ G + + LA F L+ + P L E
Sbjct: 243 DLILENKIPELLLAFNEILRKGFDGHHFIAGLASHFRDLM--VSKTPATIALLEVGEQAK 300
Query: 300 ARALQYSKEVSITFLSRFWQMILKGIS-------EIEGFSRPMEAVEMVLIRLA 346
R S++VS +FL L GI + + VE+ L++LA
Sbjct: 301 KRYEVQSQKVSQSFL-------LSGIDIANDCDLKYKLSKNQRLLVELALMQLA 347
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 210 bits (535), Expect = 6e-55
Identities = 111/281 (39%), Positives = 160/281 (56%), Gaps = 11/281 (3%)
Query: 4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVP-----TVE 58
Q+ + T+ N+ + R+ Y+ SG RG+GKTT AR+ A+++N + ID P E
Sbjct: 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRM-IDDPVYLQEVTE 79
Query: 59 FEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQML 118
G E C+ G +++ E DAAS+ S+DD+R++ + + Y P R+RVYI+DEV ML
Sbjct: 80 PCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHML 139
Query: 119 STAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKIL 178
STAAFN LKTLEEPPPH FIFATTE+ KIP T+ SRCQRF+ RI + ++ I
Sbjct: 140 STAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMIC 199
Query: 179 QEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDK-----IVTSSVRLMLALADR 233
+ E I+ D +A+ +IAR + GS RD S+LDQ IA I V +L D
Sbjct: 200 RAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELLNYIDD 259
Query: 234 NRIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAE 274
+ D+ + + D + +L+ D+G + L L E
Sbjct: 260 EQFFDVTDAIAENDAVKMLEVARFVIDNGYDEQDFLEKLIE 300
>gnl|CDD|184919 PRK14955, PRK14955, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 397
Score = 209 bits (534), Expect = 8e-55
Identities = 99/227 (43%), Positives = 140/227 (61%), Gaps = 6/227 (2%)
Query: 4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVP-----TVE 58
Q+ + +T+ N+ + GR+ Y+ SG RG+GKTT AR+ A+++N + ID E
Sbjct: 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRM-IDDADYLQEVTE 79
Query: 59 FEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQML 118
G E C+ G +++ E DAAS+ S+DD+R + + + Y P R+RVYI+DEV ML
Sbjct: 80 PCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHML 139
Query: 119 STAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKIL 178
S AAFN LKTLEEPPPH FIFATTE+ KIP T+ SRCQRF+ RI + ++ + I
Sbjct: 140 SIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGIC 199
Query: 179 QEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVR 225
+ E I D +A+ +I R + GS RD S+LDQ IA + S+R
Sbjct: 200 EAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFSVESEGEGSIR 246
>gnl|CDD|184921 PRK14957, PRK14957, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 546
Score = 204 bits (521), Expect = 2e-53
Identities = 106/272 (38%), Positives = 166/272 (61%), Gaps = 4/272 (1%)
Query: 3 GQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGF 62
GQ+ + +L +A ++ ++ +Y+ +GTRG+GKTT R++A+ LN KT T E
Sbjct: 20 GQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTG----VTAEPCNK 75
Query: 63 GEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAA 122
E+C AI + +D++E+DAAS T +++ +EI+D I Y P R++VY++DEV MLS +
Sbjct: 76 CENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQS 135
Query: 123 FNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQEES 182
FN LLKTLEEPP +VKFI ATT+ KIP+T+LSRC + L IS D+ + IL +E+
Sbjct: 136 FNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN 195
Query: 183 IEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLFGY 242
I D +++ IA + GS RD LSLLDQAI+ C ++ + ++ ML + D + +
Sbjct: 196 INSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQIKQMLGIIDSEEVYSIINA 255
Query: 243 LIKGDIINVLQEFSSQYDSGVNPSVILHDLAE 274
+I D +L + + + +L +AE
Sbjct: 256 IIDNDPKAILPAIKNLALTESSADAVLDRIAE 287
>gnl|CDD|181106 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 201 bits (514), Expect = 2e-52
Identities = 88/223 (39%), Positives = 133/223 (59%), Gaps = 6/223 (2%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60
+IGQ+ + + L+ A SGRI +Y+ SG RG GKT++ARI+ARSLN PT
Sbjct: 17 VIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN--CVE--GPTSTPC 72
Query: 61 GFGEHCQAIIRGN--HVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQML 118
G + C A+ G +DV E+DAASH +DD RE+ ++ ++ P +R++++I+DE M+
Sbjct: 73 GECDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMV 132
Query: 119 STAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKIL 178
+ FN LLK +EEPP H+KFIFATTE K+ T+ SR + + + +I
Sbjct: 133 TPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERIC 192
Query: 179 QEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVT 221
+E + +P + ++ RA GS RD LS+LDQ +A + VT
Sbjct: 193 AQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAGAGPEGVT 235
>gnl|CDD|152604 pfam12169, DNA_pol3_gamma3, DNA polymerase III subunits gamma and
tau domain III. This domain family is found in
bacteria, and is approximately 110 amino acids in
length. The family is found in association with
pfam00004. Domains I-III are shared between the tau and
the gamma subunits, while most of the DnaB-binding
Domain IV and all of the alpha-interacting Domain V are
unique to tau.
Length = 143
Score = 170 bits (434), Expect = 4e-43
Identities = 66/141 (46%), Positives = 88/141 (62%)
Query: 219 IVTSSVRLMLALADRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHL 278
+ + VR ML LADR R++DL +++GD L EF QY +G +P V+L DL E HL
Sbjct: 1 VSAAQVRDMLGLADRGRVIDLLEAILEGDAAAALAEFRDQYAAGADPVVVLRDLLELLHL 60
Query: 279 VTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAV 338
+TR+K P+ AD L E E R +K++S LSR WQM+LKGI E++ P +A
Sbjct: 61 LTRLKIAPDAADDLSLPEEERERIAALAKKLSPEVLSRLWQMLLKGIEEVKNAPDPRQAA 120
Query: 339 EMVLIRLAHAVQLPSPEEIAR 359
EM L+RLA+A LPSPEE R
Sbjct: 121 EMALLRLAYAADLPSPEEALR 141
>gnl|CDD|161993 TIGR00678, holB, DNA polymerase III, delta' subunit. At position
126-127 of the seed alignment, this family lacks the HM
motif of gamma/tau; at 132 it has a near-invariant A vs.
an invariant F in gamma/tau.
Length = 188
Score = 146 bits (370), Expect = 1e-35
Identities = 61/196 (31%), Positives = 98/196 (50%), Gaps = 13/196 (6%)
Query: 9 KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQA 68
+ L A + GR+A +Y+ +G G+GK A +A++L + P G C+
Sbjct: 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEP----CGECPSCRL 57
Query: 69 IIRGNHVDV--VELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGL 126
I GNH D+ +E + S +D VRE+++ + P + RV I+++ + ++ AA N L
Sbjct: 58 IEAGNHPDLHRLEPEGQSIK-VDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANAL 116
Query: 127 LKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFD 186
LKTLEEPPP+ FI T K+ T+ SRCQ +S L++ L + I
Sbjct: 117 LKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQ----WLIRQGIS-- 170
Query: 187 PEAVAMIARASDGSAR 202
EA ++ + GS
Sbjct: 171 EEAAELLLALAGGSPG 186
>gnl|CDD|183986 PRK13342, PRK13342, recombination factor protein RarA; Reviewed.
Length = 413
Score = 92.5 bits (231), Expect = 2e-19
Identities = 62/249 (24%), Positives = 115/249 (46%), Gaps = 51/249 (20%)
Query: 1 MIGQKPMI---KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV 57
++GQ+ ++ K L ++GR++ S +L G G GKTT ARIIA + +
Sbjct: 14 VVGQEHLLGPGKPLRRMIEAGRLS-SMILWGPPGTGKTTLARIIAGATDAP--------- 63
Query: 58 EFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQM 117
L A + + + D+RE+I++ + + R + +DE+
Sbjct: 64 -------------------FEALSAVT-SGVKDLREVIEEARQRRSAGRRTILFIDEIHR 103
Query: 118 LSTAAFNGLLKTLEEPPPHVKFIFATTE------IRKIPITVLSRCQRFDLHRISIGDLI 171
+ A + LL +E+ + I ATTE + LSR Q F+L +S D+
Sbjct: 104 FNKAQQDALLPHVED--GTITLIGATTENPSFEVNPAL----LSRAQVFELKPLSEEDIE 157
Query: 172 ELFTKILQEES---IEFDPEAVAMIARASDGSARDGLSLLDQAIARC---NDKIVTSSVR 225
+L + L+++ +E D EA+ +AR ++G AR L+LL+ A +++ +++
Sbjct: 158 QLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALGVDSITLELLEEALQ 217
Query: 226 LMLALADRN 234
A D++
Sbjct: 218 KRAARYDKD 226
>gnl|CDD|181214 PRK08058, PRK08058, DNA polymerase III subunit delta'; Validated.
Length = 329
Score = 89.6 bits (223), Expect = 1e-18
Identities = 59/204 (28%), Positives = 95/204 (46%), Gaps = 14/204 (6%)
Query: 8 IKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQ 67
+K L N+ R++ +Y+ G +G GK TA +A+SL + P +C+
Sbjct: 15 VKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCT----NCK 70
Query: 68 AIIRGNHVDVVEL--DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNG 125
I GNH DV + D S D +R + ++ + + +VYI++ ++ +A N
Sbjct: 71 RIDSGNHPDVHLVAPDGQS-IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANS 129
Query: 126 LLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIEF 185
LLK LEEP I T +I T+LSRCQ + + LI+ LQEE I
Sbjct: 130 LLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQR----LQEEGI-- 183
Query: 186 DPEAVAMIARASDGSARDGLSLLD 209
E++A + S + L+L +
Sbjct: 184 -SESLATLLAGLTNSVEEALALSE 206
>gnl|CDD|181175 PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated.
Length = 394
Score = 87.7 bits (218), Expect = 4e-18
Identities = 56/210 (26%), Positives = 101/210 (48%), Gaps = 22/210 (10%)
Query: 1 MIGQKPMIKTLTNAFKSGR---------IAQSYMLSGTRGIGKTTTARIIARSLNYKTAH 51
++GQ+ ++ L A ++ R + +++ +G G G++ AR A +L
Sbjct: 7 LVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQ--CTD 64
Query: 52 IDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSI--DDVREIIDQIYYKPISARFRV 109
D P G C+ ++ G H DV + A SI D+VRE++ +P + R+R+
Sbjct: 65 PDEPG---CGECRACRTVLAGTHPDVRVV-APEGLSIGVDEVRELVTIAARRPSTGRWRI 120
Query: 110 YIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGD 169
++++ L+ A N LLK +EEPPP ++ + T+ SRC+ L S+
Sbjct: 121 VVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEA 180
Query: 170 LIELFTKILQEESIEFDPEAVAMIARASDG 199
+ E+ +++ + + DPE ARAS G
Sbjct: 181 VAEV---LVRRDGV--DPETARRAARASQG 205
>gnl|CDD|181538 PRK08699, PRK08699, DNA polymerase III subunit delta'; Validated.
Length = 325
Score = 86.8 bits (215), Expect = 7e-18
Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 15/159 (9%)
Query: 19 RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHID-VPTVEFEGFGEHCQAIIRGNHVDV 77
R +++ +G +GIGKT AR A++L +T P E C +G+H D
Sbjct: 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMS----CHLFGQGSHPDF 74
Query: 78 VELDAAS----------HTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLL 127
E+ S ID VREIID +Y + RV ++ + ++ A N LL
Sbjct: 75 YEITPLSDEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLL 134
Query: 128 KTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRIS 166
K LEEPPP V F+ + K+ T+ SRC++ L S
Sbjct: 135 KVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPS 173
>gnl|CDD|180989 PRK07471, PRK07471, DNA polymerase III subunit delta'; Validated.
Length = 365
Score = 86.6 bits (215), Expect = 9e-18
Identities = 57/222 (25%), Positives = 99/222 (44%), Gaps = 31/222 (13%)
Query: 10 TLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFG------ 63
L +A++SGR+ ++++ G +GIGK T A +AR L A P +G
Sbjct: 30 ALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFL---LAT---PPPGGDGAVPPPTSL 83
Query: 64 ----EH--CQAIIRGNHVDVVELDAA---------SHTSIDDVREIIDQIYYKPISARFR 108
+H + I G H ++ L+ + + ++D+VRE+I +R
Sbjct: 84 AIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWR 143
Query: 109 VYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIG 168
V I+D ++ A N LLK LEEPP F+ + ++ T+ SRC++ L ++
Sbjct: 144 VVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPE 203
Query: 169 DLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQ 210
D+I+ L + + A +A ++GS L L
Sbjct: 204 DVIDA----LAAAGPDLPDDPRAALAALAEGSVGRALRLAGG 241
>gnl|CDD|180959 PRK07399, PRK07399, DNA polymerase III subunit delta'; Validated.
Length = 314
Score = 82.6 bits (205), Expect = 2e-16
Identities = 55/223 (24%), Positives = 96/223 (43%), Gaps = 34/223 (15%)
Query: 2 IGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEG 61
IGQ I+ LT A K RIA +Y+ +G G+G+ A L + +
Sbjct: 7 IGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGL--LSQGSPSKNIR--- 61
Query: 62 FGEHCQAIIRGNHVDVV----------------ELDAAS---HTS----IDDVREIIDQI 98
+ + GNH D++ E + A ++ +REI +
Sbjct: 62 -----RRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFL 116
Query: 99 YYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQ 158
P+ A +V ++++ + ++ AA N LLKTLEEP I + T++SRCQ
Sbjct: 117 SRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGT-LILIAPSPESLLPTIVSRCQ 175
Query: 159 RFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSA 201
+R+S L ++ ++ EE + + + +A+ S G+A
Sbjct: 176 IIPFYRLSDEQLEQVLKRLGDEEILNINFPELLALAQGSPGAA 218
>gnl|CDD|180132 PRK05564, PRK05564, DNA polymerase III subunit delta'; Validated.
Length = 313
Score = 80.5 bits (199), Expect = 6e-16
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 23/176 (13%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60
+IG + + + N+ R + ++++ G GIGK+ A+ IA + K+
Sbjct: 6 IIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKS----------- 54
Query: 61 GFGEHCQAIIRGNHVDVVELDAASHTSI--DDVREIIDQIYYKPISARFRVYIMDEVQML 118
R +VD++E + SI DD+R II+++ KP +V I+ + +
Sbjct: 55 --------QQR-EYVDIIEFKPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM 105
Query: 119 STAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELF 174
+ A N LKT+EEPP V I + +I T+ SRCQ + L+R+S + IE F
Sbjct: 106 TEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEE-IEKF 160
>gnl|CDD|169667 PRK09112, PRK09112, DNA polymerase III subunit delta'; Validated.
Length = 351
Score = 71.2 bits (175), Expect = 4e-13
Identities = 63/267 (23%), Positives = 106/267 (39%), Gaps = 33/267 (12%)
Query: 11 LTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFG--EHCQA 68
L A++ G++ + + G GIGK T A +A N+ +H D E +
Sbjct: 35 LAQAYREGKLHHALLFEGPEGIGKATLAFHLA---NHILSHPDPAEAP-ETLADPDPASP 90
Query: 69 IIR----GNH---------VDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEV 115
+ R G H D + ++D++R + + +R+ I+D
Sbjct: 91 VWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPA 150
Query: 116 QMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFT 175
++ A N +LKTLEEPP FI + ++ T+ SRCQ L + +L + +
Sbjct: 151 DDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALS 210
Query: 176 KILQEESIEFDPEAVAMIARASDGSARDGLSLLDQA---IARCNDKIVTSSV-------R 225
+ S D E + + S GS R L LL+ I D+++ S +
Sbjct: 211 HL--GSSQGSDGEITEALLQRSKGSVRKALLLLNYGGLEIIATIDQLLAGSGPDARKAHK 268
Query: 226 LMLALADRNR--IMDLFGYLIKGDIIN 250
L AL+ R D F + I+
Sbjct: 269 LADALSGRESEVQFDFFRDHLLDRIMA 295
>gnl|CDD|180215 PRK05707, PRK05707, DNA polymerase III subunit delta'; Validated.
Length = 328
Score = 70.9 bits (174), Expect = 4e-13
Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 27/199 (13%)
Query: 17 SGRIAQSYMLSGTRGIGKTTTA-RIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHV 75
GR +Y+L G GIGK A R+ A L G + CQ + G+H
Sbjct: 18 RGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGAC-----GSCKGCQLLRAGSHP 72
Query: 76 D--VVELDAASHT-SIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEE 132
D V+E + A T +D VRE++ + +V +++ + ++ A N LLK+LEE
Sbjct: 73 DNFVLEPEEADKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEE 132
Query: 133 PPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAM 192
P + + + ++ T+ SRCQ+ EES+++ +
Sbjct: 133 PSGDTVLLLISHQPSRLLPTIKSRCQQQ------------ACPLPSNEESLQW------L 174
Query: 193 IARASDGSARDGLSLLDQA 211
+ R+ + LL A
Sbjct: 175 QQALPESDERERIELLTLA 193
>gnl|CDD|178596 PLN03025, PLN03025, replication factor C subunit; Provisional.
Length = 319
Score = 68.6 bits (168), Expect = 2e-12
Identities = 65/269 (24%), Positives = 108/269 (40%), Gaps = 42/269 (15%)
Query: 25 MLSGTRGIGKTTTARIIARSL---NYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELD 81
+LSG G GKTT+ +A L NYK A V+EL+
Sbjct: 38 ILSGPPGTGKTTSILALAHELLGPNYKEA--------------------------VLELN 71
Query: 82 AASHTSIDDVREIIDQIYYKPIS---ARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVK 138
A+ ID VR I K ++ R ++ I+DE +++ A L +T+E +
Sbjct: 72 ASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTR 131
Query: 139 FIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASD 198
F A KI + SRC R+S +++ K+++ E + + PE + I +D
Sbjct: 132 FALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTAD 191
Query: 199 GSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLFGYLIKGDIINVLQEFSSQ 258
G R L+ L QA + +V + + ++ +KG +
Sbjct: 192 GDMRQALNNL-QATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCLKGKFDDACDGLKQL 250
Query: 259 YDSGVNPSVIL---------HDLAEFTHL 278
YD G +P+ I+ +D+ EF L
Sbjct: 251 YDLGYSPTDIITTLFRVVKNYDMPEFLKL 279
>gnl|CDD|180779 PRK06964, PRK06964, DNA polymerase III subunit delta'; Validated.
Length = 342
Score = 68.2 bits (167), Expect = 3e-12
Identities = 49/181 (27%), Positives = 75/181 (41%), Gaps = 44/181 (24%)
Query: 19 RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAII------RG 72
R+ + +L G GIGK A+ +A+ L +T D GE C +G
Sbjct: 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPD---------GEPCGTCAACNWFAQG 69
Query: 73 NHVD--VV-------------------ELDAASHTS--------IDDVREIIDQIYYKPI 103
NH D +V + D + I+ VR ++D
Sbjct: 70 NHPDYRIVRPEALAAEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTH 129
Query: 104 SARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLH 163
RV ++ + L+ AA N LLKTLEEPPP F+ + I ++ T+LSRC++F +
Sbjct: 130 RGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMT 189
Query: 164 R 164
Sbjct: 190 V 190
>gnl|CDD|102059 PRK05917, PRK05917, DNA polymerase III subunit delta'; Validated.
Length = 290
Score = 65.6 bits (160), Expect = 2e-11
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 87 SIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEI 146
SI+ R I QI+ P + +++YI+ E ++ A + LK LE+PP H I + +
Sbjct: 76 SIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKP 135
Query: 147 RKIPITVLSRC 157
+++P T+ SR
Sbjct: 136 QRLPPTIRSRS 146
>gnl|CDD|180855 PRK07132, PRK07132, DNA polymerase III subunit delta'; Validated.
Length = 299
Score = 65.1 bits (159), Expect = 3e-11
Identities = 39/180 (21%), Positives = 73/180 (40%), Gaps = 15/180 (8%)
Query: 7 MIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHC 66
IK L N+ +I+ S++L I + Y + + E
Sbjct: 4 WIKFLDNSATQNKISHSFLLKSNYNE-------DIDEKILYFLNKFNNLQITNLNEQELP 56
Query: 67 QAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISA-RFRVYIMDEVQMLSTAAFNG 125
II D+ + D S + I+++Y+ + ++ I+ ++ S + N
Sbjct: 57 ANII---LFDIFDKD----LSKSEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNA 109
Query: 126 LLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIEF 185
LLKT+EEPP F+ T I K+ T++SRCQ F++ ++ +E+ +
Sbjct: 110 LLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSKNKEKEYNW 169
>gnl|CDD|179026 PRK00440, rfc, replication factor C small subunit; Reviewed.
Length = 319
Score = 63.7 bits (156), Expect = 7e-11
Identities = 64/251 (25%), Positives = 107/251 (42%), Gaps = 31/251 (12%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60
++GQ+ +++ L + K + + +G G GKTT A +AR L
Sbjct: 19 IVGQEEIVERLKSYVKEKNMPH-LLFAGPPGTGKTTAALALAREL--------------- 62
Query: 61 GFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQI-YYKPI-SARFRVYIMDEVQML 118
+GE R N +EL+A+ ID +R I + P+ A F++ +DE L
Sbjct: 63 -YGEDW----REN---FLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNL 114
Query: 119 STAAFNGLLKTLEEPPPHVKFIFATTEIRKI--PITVLSRCQRFDLHRISIGDLIELFTK 176
++ A L +T+E + +FI + KI PI SRC F + + E
Sbjct: 115 TSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQ--SRCAVFRFSPLKKEAVAERLRY 172
Query: 177 ILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRI 236
I + E IE +A+ I S+G R ++ L QA A ++ +V + A I
Sbjct: 173 IAENEGIEITDDALEAIYYVSEGDMRKAINAL-QAAAATGKEVTEEAVYKITGTARPEEI 231
Query: 237 MDLFGYLIKGD 247
++ + GD
Sbjct: 232 REMIELALNGD 242
>gnl|CDD|180738 PRK06871, PRK06871, DNA polymerase III subunit delta'; Validated.
Length = 325
Score = 62.4 bits (152), Expect = 2e-10
Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 6/161 (3%)
Query: 5 KPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGE 64
+P + +T AF+ G + + G+G R +A+ L +T D P G
Sbjct: 8 QPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPC----GQCH 63
Query: 65 HCQAIIRGNHVDVVELDAASHTSI--DDVREIIDQIYYKPISARFRVYIMDEVQMLSTAA 122
C GNH D L+ + I D VREI +++ +V + + L+ AA
Sbjct: 64 SCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAA 123
Query: 123 FNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLH 163
N LLKTLEEP P+ F+ + T+ SRCQ + +H
Sbjct: 124 ANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIH 164
>gnl|CDD|179778 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 59.2 bits (144), Expect = 2e-09
Identities = 55/264 (20%), Positives = 106/264 (40%), Gaps = 62/264 (23%)
Query: 1 MIGQKPMIKTLT---NAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV 57
++G + + L ++ G+ ++ +L G G+GKT+ A +A +
Sbjct: 16 VVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGW---------- 65
Query: 58 EFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVR--EIIDQI-----YYKPIS-ARFRV 109
+V+EL+A+ D R ++I+++ + AR ++
Sbjct: 66 ------------------EVIELNAS------DQRTADVIERVAGEAATSGSLFGARRKL 101
Query: 110 YIMDEVQMLS-------TAAFNGLLKTLEEPPPHVKFIFATTEIRKIPI-TVLSRCQRFD 161
++DEV + A L+K ++P I + + + + C +
Sbjct: 102 ILLDEVDGIHGNEDRGGARAILELIKKAKQP-----IILTANDPYDPSLRELRNACLMIE 156
Query: 162 LHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVT 221
R+S ++ + +I ++E IE D EA+ IA S G R ++ L QAIA K+
Sbjct: 157 FKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDL-QAIAEGYGKLTL 215
Query: 222 SSVRLMLALADRNRIMDLFGYLIK 245
V+ L R+R +F L
Sbjct: 216 EDVK---TLGRRDREESIFDALDA 236
>gnl|CDD|180394 PRK06090, PRK06090, DNA polymerase III subunit delta'; Validated.
Length = 319
Score = 59.0 bits (143), Expect = 2e-09
Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 16/165 (9%)
Query: 5 KPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSL---NYKTAHIDVPTVEFEG 61
P+ + +GRI + +L G+G + + +R+L NY++ E G
Sbjct: 9 VPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQS--------EACG 60
Query: 62 FGEHCQAIIRGNHVDV----VELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQM 117
F C+ + GNH D+ E + S T ++ +R+ +R+++++
Sbjct: 61 FCHSCELMQSGNHPDLHVIKPEKEGKSIT-VEQIRQCNRLAQESSQLNGYRLFVIEPADA 119
Query: 118 LSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDL 162
++ +A N LLKTLEEP P+ F+ T +++ T++SRCQ++ +
Sbjct: 120 MNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVV 164
>gnl|CDD|181190 PRK07993, PRK07993, DNA polymerase III subunit delta'; Validated.
Length = 334
Score = 58.9 bits (143), Expect = 2e-09
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 66 CQAIIRGNHVD--VVELDAASHT-SIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAA 122
CQ + G H D + + + +D VRE+ +++Y +V + + +L+ AA
Sbjct: 65 CQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAA 124
Query: 123 FNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRC 157
N LLKTLEEPP + F A E ++ T+ SRC
Sbjct: 125 ANALLKTLEEPPENTWFFLACREPARLLATLRSRC 159
>gnl|CDD|181551 PRK08769, PRK08769, DNA polymerase III subunit delta'; Validated.
Length = 319
Score = 58.4 bits (141), Expect = 3e-09
Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 16/158 (10%)
Query: 14 AFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGN 73
A +GR+ ++ G G+GK A +A H+ + Q I G
Sbjct: 19 ALDAGRLGHGLLICGPEGLGKRAVALALA-------EHVLASGPDPAAAQRTRQLIAAGT 71
Query: 74 HVDVVELDAASHTS---------IDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFN 124
H D+ + + + I+ VREI ++ P +V I+D ++ AA N
Sbjct: 72 HPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACN 131
Query: 125 GLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDL 162
LLKTLEEP P + + ++P T+ SRCQR +
Sbjct: 132 ALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEF 169
>gnl|CDD|177379 PHA02544, 44, clamp loader, small subunit; Provisional.
Length = 316
Score = 58.1 bits (141), Expect = 3e-09
Identities = 54/291 (18%), Positives = 102/291 (35%), Gaps = 47/291 (16%)
Query: 7 MIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHC 66
+T + K GRI + S + G GKTT A+ + + +V V
Sbjct: 29 DKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-----EVLFVN-------- 75
Query: 67 QAIIRGNHVDVVELDAASHTSIDDVREIIDQI-YYKPISARFRVYIMDEVQMLSTAAFNG 125
S ID VR + + ++ +V I+DE L A
Sbjct: 76 ----------------GSDCRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQR 119
Query: 126 LLKTL-EEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTK-------I 177
L++ E + FI I + SRC+ D + + IE+ + I
Sbjct: 120 HLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGI 179
Query: 178 LQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIM 237
L+ E +E D + +A + + + R ++ L + + KI +L+ + I
Sbjct: 180 LEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYAST--GKIDAG----ILSEVTNSDID 233
Query: 238 DLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEM 288
D+ L K ++ + Y + + + + L + + I +
Sbjct: 234 DVVEAL-KAKDFKAVRALAPNYAN--DYASFVGKLYDELYPQVTPPSIIRL 281
>gnl|CDD|183503 PRK12402, PRK12402, replication factor C small subunit 2; Reviewed.
Length = 337
Score = 57.7 bits (140), Expect = 4e-09
Identities = 47/233 (20%), Positives = 98/233 (42%), Gaps = 16/233 (6%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSL---NYKTAHIDVPTV 57
++GQ +++ L+ A S ++ G G GKT R +AR L ++ +
Sbjct: 17 ILGQDEVVERLSRAVDSP-NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVA 75
Query: 58 EFEGFGEHCQAIIRGNH-VDVVELDAASHTSIDDVREIIDQIY-----YKPISARFRVYI 111
+F F + + ++ + D +S + + Y+P+SA ++ +
Sbjct: 76 DF--FDQGKKYLVEDPRFAHFLGTDKRIRSS---KIDNFKHVLKEYASYRPLSADYKTIL 130
Query: 112 MDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLI 171
+D + L A L + +E+ +FI AT + K+ + SRC + +L+
Sbjct: 131 LDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELV 190
Query: 172 ELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSV 224
++ I + E +++D + + +IA + G R + L Q A +I +
Sbjct: 191 DVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTL-QTAALAAGEITMEAA 242
>gnl|CDD|179744 PRK04132, PRK04132, replication factor C small subunit;
Provisional.
Length = 846
Score = 55.2 bits (133), Expect = 2e-08
Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 3/174 (1%)
Query: 78 VELDAASHTSIDDVREIIDQI-YYKPI-SARFRVYIMDEVQMLSTAAFNGLLKTLEEPPP 135
+EL+A+ I+ +RE + + KPI A F++ +DE L+ A L +T+E
Sbjct: 600 LELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSS 659
Query: 136 HVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIAR 195
+V+FI + KI + SRC F + D+ + I + E +E E + I
Sbjct: 660 NVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILY 719
Query: 196 ASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLFGYLIKGDII 249
++G R +++L QA A +DKI +V L+ + A I ++ +KG+ +
Sbjct: 720 IAEGDMRRAINIL-QAAAALDDKITDENVFLVASRARPEDIREMMLLALKGNFL 772
>gnl|CDD|183985 PRK13341, PRK13341, recombination factor protein RarA/unknown
domain fusion protein; Reviewed.
Length = 725
Score = 52.4 bits (126), Expect = 2e-07
Identities = 63/247 (25%), Positives = 101/247 (40%), Gaps = 73/247 (29%)
Query: 11 LTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAII 70
L A K+ R+ S +L G G+GKTT ARIIA N+ AH
Sbjct: 43 LRRAIKADRVG-SLILYGPPGVGKTTLARIIA---NHTRAH------------------- 79
Query: 71 RGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFR--------VYIMDEVQMLSTAA 122
L+A + D+R +D+ A+ R + +DEV + A
Sbjct: 80 ------FSSLNAVLA-GVKDLRAEVDR-------AKERLERHGKRTILFIDEVHRFNKAQ 125
Query: 123 FNGLLKTLEEPPPHVK-----FIFATTE-----IRKIPITVLSRCQRFDLHRISIGDLIE 172
+ LL P V+ I ATTE + K ++SR + F L +S DL +
Sbjct: 126 QDALL-------PWVENGTITLIGATTENPYFEVNK---ALVSRSRLFRLKSLSDEDLHQ 175
Query: 173 LFTKILQEE-------SIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVR 225
L + LQ++ ++ +PEA + ++G AR L+ L+ A+ +
Sbjct: 176 LLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDG-LID 234
Query: 226 LMLALAD 232
+ LA+A+
Sbjct: 235 ITLAIAE 241
>gnl|CDD|181445 PRK08485, PRK08485, DNA polymerase III subunit delta'; Validated.
Length = 206
Score = 47.0 bits (112), Expect = 9e-06
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
Query: 88 IDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIR 147
I+D +E+I + Y I+ A N LLK LEEPP ++ FI
Sbjct: 39 IEDAKEVIAEAYIAESEE---KIIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKN 95
Query: 148 KIPITVLSRCQRFDLHRISI 167
+ T+ SR +
Sbjct: 96 LLLPTIRSRLIIEK-RKQKK 114
>gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 42.8 bits (100), Expect = 2e-04
Identities = 30/142 (21%), Positives = 48/142 (33%), Gaps = 16/142 (11%)
Query: 22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELD 81
+ ++ G G GKTT AR +AR L + + +G + + + + V
Sbjct: 3 EVILIVGPPGSGKTTLARALARELGPPGGGV----IYIDGEDILEEVLDQLLLIIVGG-K 57
Query: 82 AASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLL-------KTLEEPP 134
AS + +R + + V I+DE+ L A LL L
Sbjct: 58 KASGSGELRLRLALALARKL----KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKS 113
Query: 135 PHVKFIFATTEIRKIPITVLSR 156
+ TT K L R
Sbjct: 114 EKNLTVILTTNDEKDLGPALLR 135
>gnl|CDD|180274 PRK05818, PRK05818, DNA polymerase III subunit delta'; Validated.
Length = 261
Score = 42.1 bits (99), Expect = 2e-04
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 64 EHCQAIIRGNHVDVVEL-DAASHTSIDDVREIIDQIYYKPISAR-FRVYIMDEVQMLSTA 121
E C I+ G + D + D + +D II+++ + + ++YI+ ++ L+
Sbjct: 44 ESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVESNGKKIYIIYGIEKLNKQ 103
Query: 122 AFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF 160
+ N LLK +EEPP + IF T I T+LSRC ++
Sbjct: 104 SANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQY 142
>gnl|CDD|129721 TIGR00635, ruvB, Holliday junction DNA helicase, RuvB subunit.
RuvA specifically binds Holliday junctions as a sandwich
of two tetramers and maintains the configuration of the
junction. It forms a complex with two hexameric rings of
RuvB, the subunit that contains helicase activity. The
complex drives ATP-dependent branch migration of the
Holliday junction recombination intermediate. The
endonuclease RuvC resolves junctions.
Length = 305
Score = 41.9 bits (99), Expect = 3e-04
Identities = 55/237 (23%), Positives = 97/237 (40%), Gaps = 32/237 (13%)
Query: 2 IGQKPMIKTLTNAFKSGRIAQS----YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV 57
IGQ+ + + L ++ ++ Q +L G G+GKTT A IIA + P +
Sbjct: 7 IGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPAL 66
Query: 58 EFEG-FGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQ 116
E G + G DV+ +D I + ++++ Y P FR+ I+
Sbjct: 67 EKPGDLAAILTNLEEG---DVLFID-----EIHRLSPAVEELLY-PAMEDFRLDIV---- 113
Query: 117 MLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSR---CQRFDLHRISIGDLIEL 173
+ +++ P + ATT + + R R + + ++ +L E+
Sbjct: 114 --IGKGPSA--RSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFY--TVEELAEI 167
Query: 174 FTKILQEESIEFDPEAVAMIARASDGSARDGLSLL----DQAIARCNDKIVTSSVRL 226
++ ++E +PEA IAR S G+ R LL D A R KI+ + L
Sbjct: 168 VSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVR-GQKIINRDIAL 223
>gnl|CDD|180629 PRK06581, PRK06581, DNA polymerase III subunit delta'; Validated.
Length = 263
Score = 37.9 bits (88), Expect = 0.004
Identities = 24/107 (22%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Query: 83 ASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFA 142
A + SI+ +R++ D + + ++V I+ ++++ A N LK LE+ P +
Sbjct: 66 AKNISIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLI 125
Query: 143 TTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQ----EESIEF 185
T+ I T+ SRC + ++ + EL+++ +Q ++++F
Sbjct: 126 TSRAASIISTIRSRCFKINVRSSILHAYNELYSQFIQPIADNKTLDF 172
>gnl|CDD|163066 TIGR02903, spore_lon_C, ATP-dependent protease, Lon family.
Members of this protein family resemble the widely
distributed ATP-dependent protease La, also called Lon
and LonA. It resembles even more closely LonB, which is
a LonA paralog found in genomes if and only if the
species is capable of endospore formation (as in
Bacillus subtilis, Clostridium tetani, and select other
members of the Firmicutes) and expressed specifically in
the forespore compartment. Members of this family are
restricted to a subset of spore-forming species, and are
very likely to participate in the program of endospore
formation. We propose the designation LonC.
Length = 615
Score = 34.0 bits (78), Expect = 0.055
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARII---ARSLNYKTAHIDVPTV 57
++GQ+ IK L S Q +L G G+GKTT AR+ A+ L + D P V
Sbjct: 156 IVGQERAIKALLAKVAS-PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV 214
Query: 58 EFEG 61
E +G
Sbjct: 215 EVDG 218
>gnl|CDD|131948 TIGR02902, spore_lonB, ATP-dependent protease LonB. Members of
this protein are LonB, a paralog of the ATP-dependent
protease La (LonA, TIGR00763). LonB proteins are found
strictly, and almost universally, in endospore-forming
bacteria. This protease was shown, in Bacillus subtilis,
to be expressed specifically in the forespore, during
sporulation, under control of sigma(F). The lonB gene,
despite location immediately upstream of lonA, was shown
to be monocistronic. LonB appears able to act on
sigma(H) for post-translation control, but lonB mutation
did not produce an obvious sporulation defect under the
conditions tested. Note that additional paralogs of LonA
and LonB occur in the Clostridium lineage and this model
selects only one per species as the protein that
corresponds to LonB in B. subtilis.
Length = 531
Score = 34.0 bits (78), Expect = 0.059
Identities = 63/277 (22%), Positives = 96/277 (34%), Gaps = 101/277 (36%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60
+IGQ+ IK L A G Q ++ G G+GKT AR++ L + P
Sbjct: 67 IIGQEEGIKALKAAL-CGPNPQHVIIYGPPGVGKTAAARLV---LEEAKKNPASP----- 117
Query: 61 GFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQI---YYKPI-------------- 103
F E VE+DA T+ D R I D + + PI
Sbjct: 118 -FKEGAA---------FVEIDAT--TARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQ 165
Query: 104 -------SARFRVYIMDEVQMLSTAAFNGLLKTLE----------------EPPPHVKFI 140
A V +DE+ L N LLK LE P H+ I
Sbjct: 166 PKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDI 225
Query: 141 F------------ATTEI-RKIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIE--- 184
F ATT +IP + SRC +E+F + L +E I+
Sbjct: 226 FQNGLPADFRLIGATTRNPEEIPPALRSRC-------------VEIFFRPLLDEEIKEIA 272
Query: 185 ----------FDPEAVAMIARASDGSARDGLSLLDQA 211
+ A+ +I + + + R+ ++++ A
Sbjct: 273 KNAAEKIGINLEKHALELIVKYAS-NGREAVNIVQLA 308
>gnl|CDD|163076 TIGR02928, TIGR02928, orc1/cdc6 family replication initiation
protein. Members of this protein family are found
exclusively in the archaea. This set of DNA binding
proteins shows homology to the origin recognition
complex subunit 1/cell division control protein 6 family
in eukaryotes. Several members may be found in genome
and interact with each other.
Length = 365
Score = 33.4 bits (77), Expect = 0.086
Identities = 52/283 (18%), Positives = 97/283 (34%), Gaps = 75/283 (26%)
Query: 8 IKTLTNAFKS---GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVP--TVEFEGF 62
I+ L A + G + + G G GKT + + + L DV TV
Sbjct: 24 IEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYV--- 80
Query: 63 GEHCQAIIRGNHVDVVEL-DAASHTSID------DVREIIDQIYYKPISARFR--VYIMD 113
+CQ I+ + +VEL + + + E+ ++ YK ++ R + ++D
Sbjct: 81 --NCQ-ILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRL-YKELNERGDSLIIVLD 136
Query: 114 EVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRIS--IGDLI 171
E+ L + LL L + ++ + V+ IS +
Sbjct: 137 EIDYLVGDD-DDLLYQLSR-------ARSNGDLDNAKVGVIG---------ISNDLKFRE 179
Query: 172 ELFTKI---LQEESIEFDP-EA---------------------------VAMIARASDGS 200
L ++ L EE I F P +A A +A G
Sbjct: 180 NLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGD 239
Query: 201 ARDGLSLL----DQAIARCNDKIVTSSVRLMLALADRNRIMDL 239
AR + LL + A +++ V +++R+++L
Sbjct: 240 ARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIEKDRLLEL 282
>gnl|CDD|150511 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria
(DUF2076). This domain, found in various hypothetical
prokaryotic proteins, has no known function. The domain,
however, is found in various periplasmic ligand-binding
sensor proteins.
Length = 234
Score = 32.7 bits (75), Expect = 0.17
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 169 DLIE-LFTKILQEESIEFDPEAVAMIAR--ASDGSARDGLS----LLDQAIARCNDKI 219
LI+ LF+++ Q E D EA A+IA A L + + A+ + N +I
Sbjct: 7 QLIDGLFSRLKQAEGAPRDAEAEALIAEALRRQPDAPYYLVQTILVQEAALKQANARI 64
>gnl|CDD|180916 PRK07276, PRK07276, DNA polymerase III subunit delta'; Validated.
Length = 290
Score = 31.1 bits (71), Expect = 0.46
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 66 CQAIIRGNHVDVVELDAASHT-SIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFN 124
C+ I +G DV ++ D +RE++ + +V+I+ + + A N
Sbjct: 63 CRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAAN 122
Query: 125 GLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF 160
LLK +EEP + T + K+ T+ SR Q F
Sbjct: 123 SLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIF 158
>gnl|CDD|179660 PRK03839, PRK03839, putative kinase; Provisional.
Length = 180
Score = 31.2 bits (71), Expect = 0.46
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 26 LSGTRGIGKTTTARIIARSLNYK 48
++GT G+GKTT ++++A L Y+
Sbjct: 5 ITGTPGVGKTTVSKLLAEKLGYE 27
>gnl|CDD|162744 TIGR02173, cyt_kin_arch, cytidylate kinase, putative. Proteins
in this family are believed to be cytidylate kinase.
Members of this family are found in the archaea and in
spirochaetes, and differ considerably from the common
bacterial form of cytidylate kinase described by
TIGR00017.
Length = 171
Score = 30.5 bits (69), Expect = 0.75
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 26 LSGTRGIGKTTTARIIARSLNYK 48
+SG G GKTT A+I+A L+ K
Sbjct: 5 ISGPPGSGKTTVAKILAEKLSLK 27
>gnl|CDD|179638 PRK03731, aroL, shikimate kinase II; Reviewed.
Length = 171
Score = 30.3 bits (69), Expect = 0.86
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHID 53
Q L G RG GKTT +A++L Y+ D
Sbjct: 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34
>gnl|CDD|177537 PHA03134, PHA03134, thymidine kinase; Provisional.
Length = 340
Score = 30.2 bits (68), Expect = 0.96
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 19 RIAQSYMLSGTRGIGKTTTARIIARS 44
RI + Y L G GIGK+TT R++A +
Sbjct: 12 RIVRIY-LDGAYGIGKSTTGRVMASA 36
>gnl|CDD|162213 TIGR01128, holA, DNA polymerase III, delta subunit. subunit around
DNA forming a DNA sliding clamp.
Length = 302
Score = 29.9 bits (68), Expect = 1.00
Identities = 39/223 (17%), Positives = 81/223 (36%), Gaps = 29/223 (13%)
Query: 126 LLKTLEEPPPHVKFIF----------ATTEIRKIPITVLSRCQRFDLHRISIGDLIELFT 175
L + L PPP + T ++ + + C+ +L
Sbjct: 67 LEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKT-----PKEQELPRWIQ 121
Query: 176 KILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARC-----NDKIVTSSVRLMLAL 230
L++ + DP+AV ++A +G+ L + Q + + + KI V ++
Sbjct: 122 ARLKKLGLRIDPDAVQLLAELVEGN----LLAIAQELEKLALYAPDGKITLEDVEEAVSD 177
Query: 231 ADRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMAD 290
+ R + DL L++G L+ G P ++L L L+ ++K
Sbjct: 178 SARFNVFDLTDALLEGKAARALRILKGLLGEGEEPLILLALLQRQLRLLLQLK-RLAQQG 236
Query: 291 TLLYSEAENARALQYSKEVSITFLSRF----WQMILKGISEIE 329
L A Y +++++ L R + L+ ++E +
Sbjct: 237 GPLAQLASKLGIWPYRRKLALKALRRLSLAKLEQALQELAEAD 279
>gnl|CDD|179771 PRK04182, PRK04182, cytidylate kinase; Provisional.
Length = 180
Score = 29.8 bits (68), Expect = 1.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 26 LSGTRGIGKTTTARIIARSLNYK 48
+SG G GKTT AR++A L K
Sbjct: 5 ISGPPGSGKTTVARLLAEKLGLK 27
>gnl|CDD|163057 TIGR02881, spore_V_K, stage V sporulation protein K. Members of
this protein family are the stage V sporulation protein
K (SpoVK), a close homolog of the Rubisco expression
protein CbbX (TIGR02880) and a members of the ATPase
family associated with various cellular activities
(pfam00004). Members are strictly limited to bacterial
endospore-forming species, but are not universal in
this group and are missing from the Clostridium group.
Length = 261
Score = 29.7 bits (67), Expect = 1.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 16 KSGRIAQSYMLSGTRGIGKTTTARIIAR 43
K+ + + G G GKTT ARI+ +
Sbjct: 37 KTSKQVLHMIFKGNPGTGKTTVARILGK 64
>gnl|CDD|162365 TIGR01447, recD, exodeoxyribonuclease V, alpha subunit. This
family describes the exodeoxyribonuclease V alpha
subunit, RecD. RecD is part of a RecBCD complex. A
related family in the Gram-positive bacteria separates
in a phylogenetic tree, has an additional N-terminal
extension of about 200 residues, and is not supported as
a member of a RecBCD complex by neighboring genes. The
related family is consequently described by a different
model.
Length = 586
Score = 29.4 bits (66), Expect = 1.6
Identities = 35/140 (25%), Positives = 54/140 (38%), Gaps = 35/140 (25%)
Query: 25 MLSGTRGIGKTTT-ARII----ARSLNYKTAHIDV--PTVEFEGFG---EHCQAIIRGNH 74
+++G G GKTTT AR++ +S I + PT G +R
Sbjct: 164 LITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPT------GKAAARLAESLRKAV 217
Query: 75 VDVV---ELDAASHTSIDDVREIIDQIYYKPISARFR----------VYIMDEVQMLSTA 121
++ L AA + + ++ KP + RFR V ++DE M+
Sbjct: 218 KNLAAAEALIAALPSEAVTIHRLLGI---KPDTKRFRHHERNPLPLDVLVVDEASMVDLP 274
Query: 122 AFNGLLKTLEEPPPHVKFIF 141
LLK L PP+ K I
Sbjct: 275 LMAKLLKAL---PPNTKLIL 291
>gnl|CDD|179286 PRK01368, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 454
Score = 29.0 bits (65), Expect = 1.8
Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 22/142 (15%)
Query: 172 ELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALA 231
E+F K+ QE+ I+ P +V I +G+S++D I +D + L
Sbjct: 220 EIFIKLQQEQRIKLIPFSVTKILE-------NGISVVDDKI---SDNF-FDDISFKLPFN 268
Query: 232 DRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADT 291
+L G K + N+ ++ GV P IL ++ F L R++YI + +
Sbjct: 269 K-----NLQG---KHNCENIAASYAVAKIIGVEPKKILESISSFQSLPHRMQYIGSINNI 320
Query: 292 LLY--SEAENA-RALQYSKEVS 310
Y S+A NA A+Q K +
Sbjct: 321 SFYNDSKATNAISAVQSIKALD 342
>gnl|CDD|181256 PRK08154, PRK08154, anaerobic benzoate catabolism transcriptional
regulator; Reviewed.
Length = 309
Score = 29.2 bits (66), Expect = 1.8
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 11/53 (20%)
Query: 6 PMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVE 58
M+ A + RIA L G RG GK+T R++A A + VP VE
Sbjct: 122 GMLGAGRRAARRRRIA----LIGLRGAGKSTLGRMLA-------ARLGVPFVE 163
>gnl|CDD|178847 PRK00080, ruvB, Holliday junction DNA helicase RuvB; Reviewed.
Length = 328
Score = 28.9 bits (66), Expect = 1.9
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 2 IGQKPMIKTLTNAFKSGRIAQSYM----LSGTRGIGKTTTARIIARSLN 46
IGQ+ + + L ++ + + L G G+GKTT A IIA +
Sbjct: 28 IGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG 76
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 29.0 bits (65), Expect = 2.0
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPT 56
++ ++ G G GKTT R++A L+ ++ I +
Sbjct: 38 EALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDG 72
>gnl|CDD|177580 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 29.0 bits (65), Expect = 2.1
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 185 FDPEAVAMIA-RASDGSARDGLSL 207
FDPEA+A IA R R G +
Sbjct: 973 FDPEALAEIAARCGGPPPRSGSAF 996
>gnl|CDD|162958 TIGR02639, ClpA, ATP-dependent Clp protease ATP-binding subunit
clpA.
Length = 731
Score = 28.5 bits (64), Expect = 2.6
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 3 GQKPMIKTLTNAFK--------SGRIAQSYMLSGTRGIGKTTTARIIARSLN 46
GQ I +L ++ K + S++ +G G+GKT A+ +A +L
Sbjct: 458 GQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509
>gnl|CDD|147949 pfam06068, TIP49, TIP49 C-terminus. This family consists of the
C-terminal region of several eukaryotic and archaeal
RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin
or TIP49b) proteins. The N-terminal domain contains the
pfam00004 domain. In zebrafish, the liebeskummer (lik)
mutation, causes development of hyperplastic embryonic
hearts. lik encodes Reptin, a component of a
DNA-stimulated ATPase complex. Beta-catenin and Pontin,
a DNA-stimulated ATPase that is often part of complexes
with Reptin, are in the same genetic pathways. The
Reptin/Pontin ratio serves to regulate heart growth
during development, at least in part via the
beta-catenin pathway. TBP-interacting protein 49
(TIP49) was originally identified as a TBP-binding
protein, and two related proteins are encoded by
individual genes, tip49a and b. Although the function
of this gene family has not been elucidated, they are
supposed to play a critical role in nuclear events
because they interact with various kinds of nuclear
factors and have DNA helicase activities.TIP49a has
been suggested to act as an autoantigen in some
patients with autoimmune diseases.
Length = 395
Score = 28.4 bits (64), Expect = 3.2
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 1 MIGQKPMIKT---LTNAFKSGRIA-QSYMLSGTRGIGKTTTARIIARSLNYKT 49
++GQ+ + + K G+IA ++ +++G G GKT A I++ L T
Sbjct: 26 LVGQEKAREAAGVIVEMIKEGKIAGRAVLIAGPPGTGKTALAIAISKELGEDT 78
>gnl|CDD|177850 PLN02199, PLN02199, shikimate kinase.
Length = 303
Score = 28.1 bits (62), Expect = 3.3
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDV-------PTVEFEGFGEHCQAIIRGNH 74
+S L G G GKTT +++++ L Y D T E F H + RG
Sbjct: 103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKE 162
Query: 75 VDVVE 79
D ++
Sbjct: 163 TDALK 167
>gnl|CDD|162028 TIGR00763, lon, ATP-dependent protease La. This protein is induced
by heat shock and other stresses in E. coli, B.
subtilis, and other species. The yeast member,
designated PIM1, is located in the mitochondrial matrix,
required for mitochondrial function, and also induced by
heat shock.
Length = 775
Score = 28.0 bits (63), Expect = 4.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 26 LSGTRGIGKTTTARIIARSLNYK 48
L G G+GKT+ + IA++LN K
Sbjct: 352 LVGPPGVGKTSLGKSIAKALNRK 374
>gnl|CDD|178800 PRK00023, cmk, cytidylate kinase; Provisional.
Length = 225
Score = 28.2 bits (64), Expect = 4.0
Identities = 8/21 (38%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Query: 33 GKTTTARIIARSLNYKTAHID 53
GK T A+I+A+ L + ++D
Sbjct: 16 GKGTVAKILAKKLGFH--YLD 34
>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating
P-type ATPase. The calcium P-type ATPases have been
characterized as Type IIA based on a phylogenetic
analysis which distinguishes this group from the Type
IIB PMCA calcium pump modelled by TIGR01517. A separate
analysis divides Type IIA into sub-types, SERCA and PMR1
the former of which is modelled by TIGR01116.
Length = 884
Score = 27.9 bits (62), Expect = 5.0
Identities = 15/59 (25%), Positives = 22/59 (37%)
Query: 81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKF 139
D + T R++I + + SA RV F GL+ + P P VK
Sbjct: 477 DGKTLTLTQQQRDVIQEEAAEMASAGLRVIAFASGPEKGQLTFLGLVGINDPPRPGVKE 535
>gnl|CDD|179731 PRK04053, rps13p, 30S ribosomal protein S13P; Reviewed.
Length = 149
Score = 27.5 bits (62), Expect = 5.3
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 24 YMLSGTRGIGKTTTARIIARSLN 46
Y L+G +GIG+ T AR IAR L
Sbjct: 25 YALTGIKGIGRRT-ARAIARKLG 46
>gnl|CDD|148130 pfam06330, TRI5, Trichodiene synthase (TRI5). This family consists
of several fungal trichodiene synthase proteins
(EC:4.2.3.6). TRI5 encodes the enzyme trichodiene
synthase, which has been shown to catalyse the first
step in the trichothecene pathways of Fusarium and
Trichothecium species.
Length = 376
Score = 27.5 bits (61), Expect = 5.4
Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 203 DGLSLLDQAIARCNDKIVTSSVRLMLALADRN-RIMDLFGYLIKG 246
D ++L DQA+ + + SS +++ +D++ ++MD + G
Sbjct: 251 DEITL-DQALEKLTQDTLHSSKQMVAVFSDKDPQVMDTIECFMHG 294
>gnl|CDD|178887 PRK00131, aroK, shikimate kinase; Reviewed.
Length = 175
Score = 27.5 bits (62), Expect = 5.8
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 31 GIGKTTTARIIARSLNYKTAHIDV 54
G GK+T R++A+ L Y ID
Sbjct: 14 GAGKSTIGRLLAKRLGY--DFIDT 35
>gnl|CDD|183453 PRK12338, PRK12338, hypothetical protein; Provisional.
Length = 319
Score = 27.4 bits (61), Expect = 5.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 25 MLSGTRGIGKTTTARIIARSLNYK 48
++ GIGK+T A +AR+LN K
Sbjct: 8 LIGSASGIGKSTIASELARTLNIK 31
>gnl|CDD|184454 PRK14016, PRK14016, cyanophycin synthetase; Provisional.
Length = 727
Score = 27.4 bits (62), Expect = 6.1
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
Query: 5 KPMIKTLTNAFKSGRI---AQSYMLSGTRGIGKTTTARIIARSL 45
+ ++ L GRI A ++GT G KTTT R+IA L
Sbjct: 465 EAIVDMLFPEGDDGRIPIVA----VTGTNG--KTTTTRLIAHIL 502
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2.
Length = 520
Score = 27.5 bits (61), Expect = 6.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 24 YMLSGTRGIGKTTTARIIA 42
+ + GT G GKTT ++IIA
Sbjct: 313 FGIVGTSGAGKTTLSKIIA 331
>gnl|CDD|181235 PRK08118, PRK08118, topology modulation protein; Reviewed.
Length = 167
Score = 27.3 bits (61), Expect = 7.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 25 MLSGTRGIGKTTTARIIARSLNYKTAHID 53
+L G+ G GK+T AR + LN H+D
Sbjct: 5 ILIGSGGSGKSTLARQLGEKLNIPVHHLD 33
>gnl|CDD|177581 PHA03311, PHA03311, helicase-primase subunit BBLF4; Provisional.
Length = 828
Score = 27.2 bits (61), Expect = 7.8
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 43/117 (36%)
Query: 23 SYMLSGTRGIGKTT---------------TARIIARSL-----NYKTAHIDVPTVEFEGF 62
Y+++GT G GK+T R+ A++L +A+I T+ F+ F
Sbjct: 73 VYLITGTAGAGKSTSIQTLNENLDCVITGATRVAAQNLSAKLSRATSAYI--NTI-FQEF 129
Query: 63 GEHCQAIIRGNHVDVVE-----LDAASHTSIDDV--REIIDQIYYKP----ISARFR 108
G + NHV + A++ SI+++ R++ YY P I+ RF
Sbjct: 130 G------FKSNHVQAQLRKYQYVCASTPPSIEELQKRDL---SYYWPVLSDITRRFL 177
>gnl|CDD|179118 PRK00771, PRK00771, signal recognition particle protein Srp54;
Provisional.
Length = 437
Score = 27.1 bits (61), Expect = 8.4
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 25 MLSGTRGIGKTTTARIIAR 43
ML G +G GKTTTA +AR
Sbjct: 99 MLVGLQGSGKTTTAAKLAR 117
>gnl|CDD|151027 pfam10453, NUFIP1, Nuclear fragile X mental retardation-interacting
protein 1 (NUFIP1). Proteins in this family have been
implicated in the assembly of the large subunit of the
ribosome and in telomere maintenance. Some proteins in
this family contain a CCCH zinc finger. This family
contains a protein called human fragile X mental
retardation-interacting protein 1, which is known to
bind RNA and is phosphorylated upon DNA damage.
Length = 57
Score = 26.9 bits (60), Expect = 8.4
Identities = 11/20 (55%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
Query: 349 VQLPSPEEIARYIVEEKKKK 368
++L +PEEIA++I EE+KK
Sbjct: 16 IKLQTPEEIAKWI-EERKKN 34
>gnl|CDD|140236 PTZ00209, PTZ00209, retrotransposon hot spot protein; Provisional.
Length = 693
Score = 26.9 bits (59), Expect = 9.6
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 305 YSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLI 343
Y KE S++ L F I + S+ + FSR M A EM+ +
Sbjct: 582 YRKEASVSELQEFMTNIARYFSDWDTFSRNM-AWEMIYV 619
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.137 0.381
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,114,118
Number of extensions: 409193
Number of successful extensions: 1284
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1203
Number of HSP's successfully gapped: 136
Length of query: 369
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 274
Effective length of database: 3,941,713
Effective search space: 1080029362
Effective search space used: 1080029362
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)