BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 537021.9.peg.472_1
(369 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>537021.9.peg.472_1
Length = 369
Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/369 (100%), Positives = 369/369 (100%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60
MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE
Sbjct: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60
Query: 61 GFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLST 120
GFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLST
Sbjct: 61 GFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLST 120
Query: 121 AAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQE 180
AAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQE
Sbjct: 121 AAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQE 180
Query: 181 ESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240
ESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF
Sbjct: 181 ESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240
Query: 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENA 300
GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENA
Sbjct: 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENA 300
Query: 301 RALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSPEEIARY 360
RALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSPEEIARY
Sbjct: 301 RALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSPEEIARY 360
Query: 361 IVEEKKKKT 369
IVEEKKKKT
Sbjct: 361 IVEEKKKKT 369
>gi|254780217|ref|YP_003064630.1| DNA polymerase III subunit delta' [Candidatus Liberibacter
asiaticus str. psy62]
Length = 347
Score = 53.5 bits (127), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 109/244 (44%), Gaps = 31/244 (12%)
Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTT----ARIIARSLNYKTAHIDVPT 56
+ G + + K L+ + SGR+ + + G +GIGK T A + ++ ++ A + +
Sbjct: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73
Query: 57 VEFEGFGEHCQAIIR--GNHV--DVVELDAASHTSIDDVREII--DQI----YYKPISAR 106
+ C ++ +H D + L + + R +I D+I Y+ ++A
Sbjct: 74 ------PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127
Query: 107 ---FRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLH 163
+RV ++D V ++ A N LLK+LEEPP V FI + I T+ SRC +
Sbjct: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187
Query: 164 RISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSS 223
+S +L K L++ I + A+ GS + +L DKI++S
Sbjct: 188 SLSENNL----YKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC----DKIISSY 239
Query: 224 VRLM 227
+ L+
Sbjct: 240 IDLI 243
>gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 853
Score = 30.8 bits (68), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
Query: 1 MIGQKPMIKTLTNA---FKSG-----RIAQSYMLSGTRGIGKTTTARIIARSL 45
+IGQ +++++NA F++G R S+M G G+GKT + +AR L
Sbjct: 570 VIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLL 622
>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
Length = 647
Score = 27.3 bits (59), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 17 SGRIAQSYMLSGTRGIGKTTTARIIARSLN 46
GRI +L G G GKT AR +A N
Sbjct: 177 GGRIPHGVLLVGPPGTGKTLLARAVAGEAN 206
>gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 437
Score = 27.3 bits (59), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGF-GEHCQAIIRGNHVDVVEL 80
++ +L G G+GKT +R +AR ++V G+ G + + IIR + VDV +
Sbjct: 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIR-DLVDVA-I 111
Query: 81 DAASHTSIDDVRE 93
+ + D+VRE
Sbjct: 112 NIVRESRRDEVRE 124
>gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
Liberibacter asiaticus str. psy62]
Length = 424
Score = 26.9 bits (58), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 9 KTLTNAFKSGRI---AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGF-GE 64
K L ++ KS + + +L G G GKT A+ +AR ++ D T+ G+ GE
Sbjct: 98 KRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGE 157
Query: 65 HCQAII 70
+ II
Sbjct: 158 DVENII 163
>gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter
asiaticus str. psy62]
Length = 334
Score = 26.9 bits (58), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 25 MLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAAS 84
+ G G+GKTT A+++AR L P + G+ + DV+ +D
Sbjct: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRDVLFIDEIH 115
Query: 85 HTSIDDVREIIDQIYYKPISARFRVYIM 112
SI I+++I Y P F++ +M
Sbjct: 116 RLSI-----IVEEILY-PAMEDFQLDLM 137
>gi|254780916|ref|YP_003065329.1| putative sigma-54-dependent transcription regulator protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 482
Score = 26.6 bits (57), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 7 MIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARS 44
MI+ + A K+G A M+ G G+GK +R I S
Sbjct: 149 MIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHES 186
>gi|254780132|ref|YP_003064545.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 186
Score = 24.6 bits (52), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 20 IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPT 56
+A ++L G G+GKTT A+ + + Y + V T
Sbjct: 1 MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTT 37
>gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str.
psy62]
Length = 483
Score = 24.6 bits (52), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 18 GRIAQSYMLSGTRGIGKTTTARIIAR 43
GRI + ++SG G GKTT + R
Sbjct: 247 GRIRCNVLISGGTGSGKTTLLNCLTR 272
>gi|254780831|ref|YP_003065244.1| hypothetical protein CLIBASIA_03620 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 341
Score = 23.9 bits (50), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 27 SGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEG 61
SG G+GK+TT IA +L K ++ + + G
Sbjct: 102 SGKGGVGKSTTVVNIACALKNKGKNVAILDADVYG 136
>gi|254780971|ref|YP_003065384.1| phosphoribosylformylglycinamidine synthase subunit I [Candidatus
Liberibacter asiaticus str. psy62]
Length = 219
Score = 23.9 bits (50), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 258 QYDSGVNPSVILHDLA 273
+Y SG NP+ LHD+A
Sbjct: 166 RYASGTNPNGSLHDIA 181
>gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 898
Score = 23.5 bits (49), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 52 IDVPTVEFEGFGEHCQAIIRGNHV 75
+ V +VE+E G H A+ G HV
Sbjct: 676 VRVVSVEYEDGGVHSSALCGGTHV 699
>gi|254780930|ref|YP_003065343.1| nodulation protein (outer membrane efflux protein) [Candidatus
Liberibacter asiaticus str. psy62]
Length = 452
Score = 23.5 bits (49), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 318 WQ-MILKGISEIEGFSRPMEAVEMVLIRLAHAVQL 351
WQ +L I E+E + + ++ +L HAV+L
Sbjct: 358 WQETVLNAIKEVENALTSINEDKKIVTKLQHAVEL 392
>gi|254781197|ref|YP_003065610.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 185
Score = 23.1 bits (48), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 20 IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPT 56
+A ++L G G+G+TT A+ + + Y + V T
Sbjct: 1 MAHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTT 37
>gi|254781213|ref|YP_003065626.1| head-to-tail joining protein, putative [Candidatus Liberibacter
asiaticus str. psy62]
Length = 556
Score = 23.1 bits (48), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 208 LDQAIARCNDKIVTSSVRLMLALADRNRI 236
+DQ +++ DK+++S ++ LA + R
Sbjct: 183 VDQIVSKWGDKVLSSKMKSALARNENERF 211
>gi|254780468|ref|YP_003064881.1| sensory box/GGDEF family protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 963
Score = 22.7 bits (47), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 110 YIMDEVQMLSTAAFNGLLKTLEEPPPHVK 138
YI D + S FN +LK L+E P VK
Sbjct: 934 YIQDS-HVASPLGFNSILKLLKERFPLVK 961
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.137 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 213,584
Number of Sequences: 1233
Number of extensions: 8380
Number of successful extensions: 51
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 24
length of query: 369
length of database: 328,796
effective HSP length: 75
effective length of query: 294
effective length of database: 236,321
effective search space: 69478374
effective search space used: 69478374
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 39 (19.6 bits)