BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 537021.9.peg.472_1 (369 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >537021.9.peg.472_1 Length = 369 Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/369 (100%), Positives = 369/369 (100%) Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE Sbjct: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFE 60 Query: 61 GFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLST 120 GFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLST Sbjct: 61 GFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLST 120 Query: 121 AAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQE 180 AAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQE Sbjct: 121 AAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQE 180 Query: 181 ESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240 ESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF Sbjct: 181 ESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240 Query: 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENA 300 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENA Sbjct: 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENA 300 Query: 301 RALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSPEEIARY 360 RALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSPEEIARY Sbjct: 301 RALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSPEEIARY 360 Query: 361 IVEEKKKKT 369 IVEEKKKKT Sbjct: 361 IVEEKKKKT 369 >gi|254780217|ref|YP_003064630.1| DNA polymerase III subunit delta' [Candidatus Liberibacter asiaticus str. psy62] Length = 347 Score = 53.5 bits (127), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 60/244 (24%), Positives = 109/244 (44%), Gaps = 31/244 (12%) Query: 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTT----ARIIARSLNYKTAHIDVPT 56 + G + + K L+ + SGR+ + + G +GIGK T A + ++ ++ A + + Sbjct: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 Query: 57 VEFEGFGEHCQAIIR--GNHV--DVVELDAASHTSIDDVREII--DQI----YYKPISAR 106 + C ++ +H D + L + + R +I D+I Y+ ++A Sbjct: 74 ------PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN 127 Query: 107 ---FRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLH 163 +RV ++D V ++ A N LLK+LEEPP V FI + I T+ SRC + Sbjct: 128 TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 Query: 164 RISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSS 223 +S +L K L++ I + A+ GS + +L DKI++S Sbjct: 188 SLSENNL----YKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC----DKIISSY 239 Query: 224 VRLM 227 + L+ Sbjct: 240 IDLI 243 >gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus Liberibacter asiaticus str. psy62] Length = 853 Score = 30.8 bits (68), Expect = 0.033, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 8/53 (15%) Query: 1 MIGQKPMIKTLTNA---FKSG-----RIAQSYMLSGTRGIGKTTTARIIARSL 45 +IGQ +++++NA F++G R S+M G G+GKT + +AR L Sbjct: 570 VIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLL 622 >gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62] Length = 647 Score = 27.3 bits (59), Expect = 0.37, Method: Compositional matrix adjust. Identities = 13/30 (43%), Positives = 15/30 (50%) Query: 17 SGRIAQSYMLSGTRGIGKTTTARIIARSLN 46 GRI +L G G GKT AR +A N Sbjct: 177 GGRIPHGVLLVGPPGTGKTLLARAVAGEAN 206 >gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 437 Score = 27.3 bits (59), Expect = 0.39, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%) Query: 22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGF-GEHCQAIIRGNHVDVVEL 80 ++ +L G G+GKT +R +AR ++V G+ G + + IIR + VDV + Sbjct: 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIR-DLVDVA-I 111 Query: 81 DAASHTSIDDVRE 93 + + D+VRE Sbjct: 112 NIVRESRRDEVRE 124 >gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Liberibacter asiaticus str. psy62] Length = 424 Score = 26.9 bits (58), Expect = 0.56, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%) Query: 9 KTLTNAFKSGRI---AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGF-GE 64 K L ++ KS + + +L G G GKT A+ +AR ++ D T+ G+ GE Sbjct: 98 KRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGE 157 Query: 65 HCQAII 70 + II Sbjct: 158 DVENII 163 >gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter asiaticus str. psy62] Length = 334 Score = 26.9 bits (58), Expect = 0.57, Method: Compositional matrix adjust. Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 8/88 (9%) Query: 25 MLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAAS 84 + G G+GKTT A+++AR L P + G+ + DV+ +D Sbjct: 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GDLAALLTNLEDRDVLFIDEIH 115 Query: 85 HTSIDDVREIIDQIYYKPISARFRVYIM 112 SI I+++I Y P F++ +M Sbjct: 116 RLSI-----IVEEILY-PAMEDFQLDLM 137 >gi|254780916|ref|YP_003065329.1| putative sigma-54-dependent transcription regulator protein [Candidatus Liberibacter asiaticus str. psy62] Length = 482 Score = 26.6 bits (57), Expect = 0.65, Method: Compositional matrix adjust. Identities = 14/38 (36%), Positives = 20/38 (52%) Query: 7 MIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARS 44 MI+ + A K+G A M+ G G+GK +R I S Sbjct: 149 MIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHES 186 >gi|254780132|ref|YP_003064545.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 186 Score = 24.6 bits (52), Expect = 2.5, Method: Compositional matrix adjust. Identities = 12/37 (32%), Positives = 20/37 (54%) Query: 20 IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPT 56 +A ++L G G+GKTT A+ + + Y + V T Sbjct: 1 MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTT 37 >gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str. psy62] Length = 483 Score = 24.6 bits (52), Expect = 3.0, Method: Compositional matrix adjust. Identities = 11/26 (42%), Positives = 15/26 (57%) Query: 18 GRIAQSYMLSGTRGIGKTTTARIIAR 43 GRI + ++SG G GKTT + R Sbjct: 247 GRIRCNVLISGGTGSGKTTLLNCLTR 272 >gi|254780831|ref|YP_003065244.1| hypothetical protein CLIBASIA_03620 [Candidatus Liberibacter asiaticus str. psy62] Length = 341 Score = 23.9 bits (50), Expect = 4.1, Method: Compositional matrix adjust. Identities = 12/35 (34%), Positives = 19/35 (54%) Query: 27 SGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEG 61 SG G+GK+TT IA +L K ++ + + G Sbjct: 102 SGKGGVGKSTTVVNIACALKNKGKNVAILDADVYG 136 >gi|254780971|ref|YP_003065384.1| phosphoribosylformylglycinamidine synthase subunit I [Candidatus Liberibacter asiaticus str. psy62] Length = 219 Score = 23.9 bits (50), Expect = 4.2, Method: Compositional matrix adjust. Identities = 9/16 (56%), Positives = 12/16 (75%) Query: 258 QYDSGVNPSVILHDLA 273 +Y SG NP+ LHD+A Sbjct: 166 RYASGTNPNGSLHDIA 181 >gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 898 Score = 23.5 bits (49), Expect = 5.3, Method: Compositional matrix adjust. Identities = 10/24 (41%), Positives = 14/24 (58%) Query: 52 IDVPTVEFEGFGEHCQAIIRGNHV 75 + V +VE+E G H A+ G HV Sbjct: 676 VRVVSVEYEDGGVHSSALCGGTHV 699 >gi|254780930|ref|YP_003065343.1| nodulation protein (outer membrane efflux protein) [Candidatus Liberibacter asiaticus str. psy62] Length = 452 Score = 23.5 bits (49), Expect = 5.9, Method: Compositional matrix adjust. Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Query: 318 WQ-MILKGISEIEGFSRPMEAVEMVLIRLAHAVQL 351 WQ +L I E+E + + ++ +L HAV+L Sbjct: 358 WQETVLNAIKEVENALTSINEDKKIVTKLQHAVEL 392 >gi|254781197|ref|YP_003065610.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 185 Score = 23.1 bits (48), Expect = 6.9, Method: Compositional matrix adjust. Identities = 11/37 (29%), Positives = 20/37 (54%) Query: 20 IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPT 56 +A ++L G G+G+TT A+ + + Y + V T Sbjct: 1 MAHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTT 37 >gi|254781213|ref|YP_003065626.1| head-to-tail joining protein, putative [Candidatus Liberibacter asiaticus str. psy62] Length = 556 Score = 23.1 bits (48), Expect = 8.3, Method: Compositional matrix adjust. Identities = 8/29 (27%), Positives = 18/29 (62%) Query: 208 LDQAIARCNDKIVTSSVRLMLALADRNRI 236 +DQ +++ DK+++S ++ LA + R Sbjct: 183 VDQIVSKWGDKVLSSKMKSALARNENERF 211 >gi|254780468|ref|YP_003064881.1| sensory box/GGDEF family protein [Candidatus Liberibacter asiaticus str. psy62] Length = 963 Score = 22.7 bits (47), Expect = 9.9, Method: Compositional matrix adjust. Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%) Query: 110 YIMDEVQMLSTAAFNGLLKTLEEPPPHVK 138 YI D + S FN +LK L+E P VK Sbjct: 934 YIQDS-HVASPLGFNSILKLLKERFPLVK 961 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.137 0.381 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 213,584 Number of Sequences: 1233 Number of extensions: 8380 Number of successful extensions: 51 Number of sequences better than 100.0: 22 Number of HSP's better than 100.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 24 length of query: 369 length of database: 328,796 effective HSP length: 75 effective length of query: 294 effective length of database: 236,321 effective search space: 69478374 effective search space used: 69478374 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 39 (19.6 bits)