HHsearch alignment for GI: peg_473 and conserved domain: pfam12362
>pfam12362 DUF3646 DNA polymerase III gamma and tau subunits C terminal. This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with pfam00004. The proteins in this family are frequently annotated as the gamma and tau subunits of DNA polymerase III, however there is little accompanying literature to back this up.
Probab=100.00 E-value=7.1e-37 Score=237.06 Aligned_cols=101 Identities=29% Similarity=0.458 Sum_probs=94.2
Q ss_pred CCCCHHHHHHHHHHCCHHHHHHHHHHCCCCEEECCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCH----
Q ss_conf 1244899999998618266799997264004504980899977899977999999999986099259999689741----
Q 537021.9.peg.4 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCC---- 135 (165)
Q Consensus 60 ~~nsf~~lveL~~~~rei~Lk~~Le~~VrLVsFe~GrIei~~~~~a~~~l~~~Ls~~L~~wTG~rW~VslS~g~~~---- 135 (165)
T Consensus 2 ~i~sf~dlv~l~~~~re~~L~~~l~~~VrlVsf~~G~Iei~~~~~~~~~l~~~L~~~L~~wTg~rW~Vs~s~~~g~~Tl~ 81 (117)
T pfam12362 2 RIASFEDLVALARAKRDIKLKVEVERDVRLVSFEPGRIEFRPTPGAPRDLAQRLGRKLQEWTGRRWAVSLSNEGGAPTLA 81 (117)
T ss_pred CCCCHHHHHHHHHHCCHHHHHHHHHHCCEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH
T ss_conf 75899999999997675989999997837898408978997589998779999999999973998099965789987899
Q ss_pred -----------HHHHCCHHHHHHHHHCCCCEEEEEE
Q ss_conf -----------3665396999999867997789877
Q 537021.9.peg.4 136 -----------EYFEIDSDIKAVRTIFPTAQVVCIR 160 (165)
Q Consensus 136 -----------e~~~~dp~V~avl~~FPgAeI~~VR 160 (165)
T Consensus 82 E~~~~~~~~~~~~~~~~P~v~avl~~FP~A~I~~Vr 117 (117)
T pfam12362 82 EQEAAAKEALRADARAHPLVQAVLAAFPGAKIVDVR 117 (117)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEECC
T ss_conf 999999999999998798999999879898877229