Query         537021.9.peg.473_1
Match_columns 165
No_of_seqs    132 out of 531
Neff          4.7 
Searched_HMMs 33803
Date          Wed May 25 03:56:12 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_473.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2noj_B EFB homologous protein  26.2      41  0.0012   15.2   2.1   32   64-95     29-60  (80)
  2 >3fdj_A DEGV family protein; G  24.7      51  0.0015   14.7   5.3   87   72-160    50-140 (161)
  3 >1u69_A Hypothetical protein;   23.2      55  0.0016   14.5   2.6   22  143-164    20-41  (73)
  4 >2gom_A Fibrinogen-binding pro  21.5      56  0.0017   14.5   2.0   30   65-94     11-40  (61)
  5 >2aya_A DNA polymerase III sub  21.0      61  0.0018   14.2   3.7   66   66-132    25-94  (128)
  6 >2dvy_A Restriction endonuclea  20.3      46  0.0014   14.9   1.4   27   89-115    10-36  (134)
  7 >1pzx_A Hypothetical protein A  20.1      64  0.0019   14.1   4.2   95   65-161    44-143 (167)
  8 >1eum_A Ferritin 1; ECFTNA, me  19.0      68   0.002   14.0   2.2   27   62-88     26-52  (92)
  9 >3fys_A Protein DEGV; fatty ac  15.7      81  0.0024   13.5   6.4   94   66-161    10-108 (128)
 10 >3e6s_A Ferritin; iron storage  15.3      83  0.0025   13.4   2.2   27   62-88     27-53  (95)

No 1  
>>2noj_B EFB homologous protein; protein-protein complex, immune system; 2.70A {Staphylococcus aureus subsp} (B:)
Probab=26.24  E-value=41  Score=15.23  Aligned_cols=32  Identities=16%  Similarity=0.324  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHCCCCEEECCC
Q ss_conf             89999999861826679999726400450498
Q 537021.9.peg.4   64 TKQLIELCEKNHDYKMVEMLQRFLHVVSFELG   95 (165)
Q Consensus        64 f~~lveL~~~~rei~Lk~~Le~~VrLVsFe~G   95 (165)
                      -..+|.++++-+-.--+-.-.+.|+||||+-.
T Consensus        29 AQ~~V~~F~kT~TVs~HRKAQkAVNLv~F~~~   60 (80)
T 2noj_B           29 AQKAVELFKRTRTVATHRKAQRAVNLIHFQHS   60 (80)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHCCCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999875579988999987768878989


No 2  
>>3fdj_A DEGV family protein; GUT microbiome,, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE P2K PG4; 1.80A {Eubacterium eligens} (A:118-278)
Probab=24.70  E-value=51  Score=14.67  Aligned_cols=87  Identities=15%  Similarity=0.099  Sum_probs=62.5

Q ss_pred             HHCCHHHHHHHHHHCCC---CEEE-CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHCCHHHHHH
Q ss_conf             86182667999972640---0450-4980899977899977999999999986099259999689741366539699999
Q 537021.9.peg.4   72 EKNHDYKMVEMLQRFLH---VVSF-ELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYFEIDSDIKAV  147 (165)
Q Consensus        72 ~~~rei~Lk~~Le~~Vr---LVsF-e~GrIei~~~~~a~~~l~~~Ls~~L~~wTG~rW~VslS~g~~~e~~~~dp~V~av  147 (165)
                      .--|=..+..-+-+-++   +++| +.|+|+..-.....+.....+-..+.+.......+.+.-+...+.  ++.+...+
T Consensus        50 kgGRis~~~~~i~~lL~ikPIi~~~~~G~l~~~~k~R~~kka~~~~~~~~~~~~~~~~~~~i~~~~~~e~--~~~l~~~l  127 (161)
T 3fdj_A           50 QNGRVSKVVASAAEVLGISVIGTASSHGTLEAIGKCRGDKKLLVKLQALLDDAGYEGGKLRICHVENEAL--ADKIADXI  127 (161)
T ss_dssp             HTTSSCHHHHHGGGSTTEEEEEEECTTSSEEEEEEEESHHHHHHHHHHHHHHHTCCSCCEEEEESSCHHH--HHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHCCEEEEEECCCCEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHH--HHHHHHHH
T ss_conf             6783658899998622756899984688289988763288999999999997378998699998999999--99999999


Q ss_pred             HHHCCCCEEEEEE
Q ss_conf             9867997789877
Q 537021.9.peg.4  148 RTIFPTAQVVCIR  160 (165)
Q Consensus       148 l~~FPgAeI~~VR  160 (165)
                      .+.||..+|.-..
T Consensus       128 ~~~~~~~~i~~~~  140 (161)
T 3fdj_A          128 KQAYGTTDVCVYK  140 (161)
T ss_dssp             HHHHCCCCEEEEE
T ss_pred             HHHCCCCCEEEEE
T ss_conf             9776998689998


No 3  
>>1u69_A Hypothetical protein; structural genomics, MSCG, protein structure initiative (PSI), midwest center for structural genomics, MCSG; 1.60A {Pseudomonas aeruginosa PAO1} (A:1-73)
Probab=23.19  E-value=55  Score=14.50  Aligned_cols=22  Identities=18%  Similarity=0.398  Sum_probs=17.2

Q ss_pred             HHHHHHHHCCCCEEEEEEECCC
Q ss_conf             9999998679977898774588
Q 537021.9.peg.4  143 DIKAVRTIFPTAQVVCIRTIPN  164 (165)
Q Consensus       143 ~V~avl~~FPgAeI~~VR~~p~  164 (165)
                      .+.=-.++||+++|..+.+.++
T Consensus        20 A~~fY~~vF~~~~i~~~~~~~~   41 (73)
T 1u69_A           20 AATFYAETFPDSAVLAVHRAPG   41 (73)
T ss_dssp             HHHHHHHHSTTEEEEEEEECSS
T ss_pred             HHHHHHHHCCCCEEEEEEECCC
T ss_conf             9999999869987768985589


No 4  
>>2gom_A Fibrinogen-binding protein; three-helix closed bundle with LEFT-hand twist, cell adhesion/toxin complex; 1.25A {Staphylococcus aureus} (A:)
Probab=21.52  E-value=56  Score=14.46  Aligned_cols=30  Identities=30%  Similarity=0.419  Sum_probs=26.3

Q ss_pred             HHHHHHHHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf             999999986182667999972640045049
Q 537021.9.peg.4   65 KQLIELCEKNHDYKMVEMLQRFLHVVSFEL   94 (165)
Q Consensus        65 ~~lveL~~~~rei~Lk~~Le~~VrLVsFe~   94 (165)
                      ..+|.++++-+-.--+-.-.+.|+||+|+-
T Consensus        11 Q~~V~~F~~T~TV~~HRKAQ~AVNLi~F~~   40 (61)
T 2gom_A           11 QNLVREFEKTHTVSAHRKAQKAVNLVSFEY   40 (61)
T ss_dssp             HHHHHHHHHHCBHHHHHHHHHHHHHSCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999987457998899998765777898


No 5  
>>2aya_A DNA polymerase III subunit TAU; KH-fold, C-terminus of polymerase III TAU subunit, transferase; HET: DNA; NMR {Escherichia coli} (A:)
Probab=21.05  E-value=61  Score=14.24  Aligned_cols=66  Identities=12%  Similarity=-0.010  Sum_probs=47.6

Q ss_pred             HHHHHHHHCCHHHHHHHHHHCCCCEEECCCEEEEEECCC----CCHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             999999861826679999726400450498089997789----9977999999999986099259999689
Q 537021.9.peg.4   66 QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKE----IPEDFIENLATKLKNWTGEDWEIRFSLG  132 (165)
Q Consensus        66 ~lveL~~~~rei~Lk~~Le~~VrLVsFe~GrIei~~~~~----a~~~l~~~Ls~~L~~wTG~rW~VslS~g  132 (165)
                      +=..++..-+=..|..+|=-|--|++ ..|.+.+.+.+.    .......+|...|.++=|+.=.|.+..|
T Consensus        25 ~W~~lv~~L~l~G~~rqLA~n~~l~~-~~~~l~L~L~~~~~~L~~~~~~~~L~~ALs~~~g~~i~l~I~~g   94 (128)
T 2aya_A           25 PWAAQVSQLSLPKLVEQVALNAWKEE-SDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVED   94 (128)
T ss_dssp             HHHHHHHHHTCCSHHHHHHHTEEEEE-CSSEEEEEECGGGTTTCCHHHHHHHHHHHHHHHSSCCEEEEEEC
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHEEE-ECCEEEEEECHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             17999997487279999998301465-38868999777877556899999999999999689868999878


No 6  
>>2dvy_A Restriction endonuclease PABI; hydrolase; 3.00A {Pyrococcus abyssi} (A:1-27,A:72-135,A:184-226)
Probab=20.26  E-value=46  Score=14.93  Aligned_cols=27  Identities=30%  Similarity=0.401  Sum_probs=15.7

Q ss_pred             CEEECCCEEEEEECCCCCHHHHHHHHH
Q ss_conf             045049808999778999779999999
Q 537021.9.peg.4   89 VVSFELGRLEVSFLKEIPEDFIENLAT  115 (165)
Q Consensus        89 LVsFe~GrIei~~~~~a~~~l~~~Ls~  115 (165)
                      -|||+.|+|.+++.-.-|...--.|++
T Consensus        10 svsfengkivvrlpitrpgkydyelsr   36 (134)
T 2dvy_A           10 SVSFENGKIVVRLPITRPGKYDYELSR   36 (134)
T ss_dssp             EEEECSSSEEEEEESSSCSSSCSHHHH
T ss_pred             EEEEECCEEEEEEECCCCCHHHHHHHH
T ss_conf             888608769999841355316887999


No 7  
>>1pzx_A Hypothetical protein APC36103; structural genomics, two domains containing mixed alpha/beta structures, PSI; HET: PLM; 2.00A {Geobacillus stearothermophilus} (A:30-65,A:159-289)
Probab=20.07  E-value=64  Score=14.11  Aligned_cols=95  Identities=11%  Similarity=-0.026  Sum_probs=66.9

Q ss_pred             HHHHHHHHHCCHHHHHHHHHHCC---CCEEECCCEEEEEECCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCCHHHHH
Q ss_conf             99999998618266799997264---00450498089997789997799999999998609--92599996897413665
Q 537021.9.peg.4   65 KQLIELCEKNHDYKMVEMLQRFL---HVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTG--EDWEIRFSLGRCCEYFE  139 (165)
Q Consensus        65 ~~lveL~~~~rei~Lk~~Le~~V---rLVsFe~GrIei~~~~~a~~~l~~~Ls~~L~~wTG--~rW~VslS~g~~~e~~~  139 (165)
                      .+|-.|..--|=......+-+-+   =+++|+.|.+++.-.....+.....+-..+.+-..  ..+.+.++.+...+.  
T Consensus        44 ~~L~~L~kgGRIs~~aa~Ig~lLkIKPII~~~~G~i~~~~K~Rg~kka~~~li~~i~~~~~~~~~~~i~i~h~~~~e~--  121 (167)
T 1pzx_A           44 DNLDYLARGGRISKTAAAFGGLLNIKPLLHVEDGALIPLEKWRGRKKVLKRMVELMGERGDDLQKQTIGISHADDEET--  121 (167)
T ss_dssp             SCHHHHHHHTSCC----------CEEEEEEEETTEEEEEEEEESHHHHHHHHHHHHHHHCSSGGGSEEEEEESSCHHH--
T ss_pred             CCHHHHHHCCCCHHHHHHHHHHHCCEEEEEEECCEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHH--
T ss_conf             987999877972788999986017079999719879998887008999999999999862478873899990899999--


Q ss_pred             CCHHHHHHHHHCCCCEEEEEEE
Q ss_conf             3969999998679977898774
Q 537021.9.peg.4  140 IDSDIKAVRTIFPTAQVVCIRT  161 (165)
Q Consensus       140 ~dp~V~avl~~FPgAeI~~VR~  161 (165)
                      ++-+.+.+.+.||..++.-...
T Consensus       122 a~~l~~~l~~~~~~~~i~~~~~  143 (167)
T 1pzx_A          122 ALELKQMIEETHGCTRFFLSDI  143 (167)
T ss_dssp             HHHHHHHHHHHTCCCEEEEEEC
T ss_pred             HHHHHHHHHHHCCCCEEEEEEE
T ss_conf             9999999987669972999984


No 8  
>>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} (A:74-165)
Probab=19.04  E-value=68  Score=13.98  Aligned_cols=27  Identities=22%  Similarity=0.399  Sum_probs=23.8

Q ss_pred             CCHHHHHHHHHHCCHHHHHHHHHHCCC
Q ss_conf             448999999986182667999972640
Q 537021.9.peg.4   62 NYTKQLIELCEKNHDYKMVEMLQRFLH   88 (165)
Q Consensus        62 nsf~~lveL~~~~rei~Lk~~Le~~Vr   88 (165)
                      .++.+|+.+|.+.+|..+...|+.+|+
T Consensus        26 ~~i~~L~~~A~~~~D~~~~~FL~~Fi~   52 (92)
T 1eum_A           26 QKINELAHAAMTNQDYPTFNFLQWYVS   52 (92)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             999999999988599989999999999


No 9  
>>3fys_A Protein DEGV; fatty acid-binding, EDD fold, fatty acid-binding protein; HET: PLM; 2.50A {Bacillus subtilis} (A:188-315)
Probab=15.70  E-value=81  Score=13.50  Aligned_cols=94  Identities=12%  Similarity=0.049  Sum_probs=59.7

Q ss_pred             HHHHHHHHCCHHHHHHHHHHCCC---CEEECCCEEEEEECCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCCHHHHHC
Q ss_conf             99999986182667999972640---045049808999778999779999999999860--9925999968974136653
Q 537021.9.peg.4   66 QLIELCEKNHDYKMVEMLQRFLH---VVSFELGRLEVSFLKEIPEDFIENLATKLKNWT--GEDWEIRFSLGRCCEYFEI  140 (165)
Q Consensus        66 ~lveL~~~~rei~Lk~~Le~~Vr---LVsFe~GrIei~~~~~a~~~l~~~Ls~~L~~wT--G~rW~VslS~g~~~e~~~~  140 (165)
                      +|-.|..--|=....+.+-+-++   .++|+.|++++--....-+.....+...+.+-.  +..-.+.+..+...+  .+
T Consensus        10 ~L~~L~kgGRis~~~a~i~~lL~IkPii~~~~G~~~~~~K~Rg~kka~~~~~~~~~~~~~~~~~~~i~i~~~~~~e--~~   87 (128)
T 3fys_A           10 DLAHLQRGGRLSSAQAFIGSLLKVKPILHFDNKVIVPFEKIRTRKKAISRIYELLDEDASKGLPMRAAVIHANREE--EA   87 (128)
T ss_dssp             CTHHHHHHTTTHHHHHHHSSCCCSCEEEEEETTEEEEEEECSCHHHHHHHHHHHHHHHHTTCCCEEEEEEESSCHH--HH
T ss_pred             CHHHHHHCCCCCHHHHHHHHHCCCEEEEEEECCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHH--HH
T ss_conf             8899987697753667665300405899983886887400157999999999999998506997089999798999--99


Q ss_pred             CHHHHHHHHHCCCCEEEEEEE
Q ss_conf             969999998679977898774
Q 537021.9.peg.4  141 DSDIKAVRTIFPTAQVVCIRT  161 (165)
Q Consensus       141 dp~V~avl~~FPgAeI~~VR~  161 (165)
                      +-+.+.+.+.||..+|.-...
T Consensus        88 ~~l~~~l~~~~~~~~i~~~~~  108 (128)
T 3fys_A           88 AKIIEELSAKYPHVEFYNSYF  108 (128)
T ss_dssp             HHHHHHHHHHCTTEEEEEEEC
T ss_pred             HHHHHHHHHHCCCCEEEEEEE
T ss_conf             999999970679983999985


No 10 
>>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A {Pseudo-nitzschia multiseries} PDB: 3e6r_A (A:74-168)
Probab=15.32  E-value=83  Score=13.44  Aligned_cols=27  Identities=22%  Similarity=0.341  Sum_probs=23.6

Q ss_pred             CCHHHHHHHHHHCCHHHHHHHHHHCCC
Q ss_conf             448999999986182667999972640
Q 537021.9.peg.4   62 NYTKQLIELCEKNHDYKMVEMLQRFLH   88 (165)
Q Consensus        62 nsf~~lveL~~~~rei~Lk~~Le~~Vr   88 (165)
                      .++.+|..+|.+.+|..+...|+.+|+
T Consensus        27 ~~i~~L~~~A~~~~D~~~~~FL~~Fi~   53 (95)
T 3e6s_A           27 RSLLNLAEAASTCHDFAVMAFLNPFHL   53 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             999999999988698879999999999


Done!