Query 537021.9.peg.473_1 Match_columns 165 No_of_seqs 132 out of 531 Neff 4.7 Searched_HMMs 33803 Date Wed May 25 03:56:12 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_473.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2noj_B EFB homologous protein 26.2 41 0.0012 15.2 2.1 32 64-95 29-60 (80) 2 >3fdj_A DEGV family protein; G 24.7 51 0.0015 14.7 5.3 87 72-160 50-140 (161) 3 >1u69_A Hypothetical protein; 23.2 55 0.0016 14.5 2.6 22 143-164 20-41 (73) 4 >2gom_A Fibrinogen-binding pro 21.5 56 0.0017 14.5 2.0 30 65-94 11-40 (61) 5 >2aya_A DNA polymerase III sub 21.0 61 0.0018 14.2 3.7 66 66-132 25-94 (128) 6 >2dvy_A Restriction endonuclea 20.3 46 0.0014 14.9 1.4 27 89-115 10-36 (134) 7 >1pzx_A Hypothetical protein A 20.1 64 0.0019 14.1 4.2 95 65-161 44-143 (167) 8 >1eum_A Ferritin 1; ECFTNA, me 19.0 68 0.002 14.0 2.2 27 62-88 26-52 (92) 9 >3fys_A Protein DEGV; fatty ac 15.7 81 0.0024 13.5 6.4 94 66-161 10-108 (128) 10 >3e6s_A Ferritin; iron storage 15.3 83 0.0025 13.4 2.2 27 62-88 27-53 (95) No 1 >>2noj_B EFB homologous protein; protein-protein complex, immune system; 2.70A {Staphylococcus aureus subsp} (B:) Probab=26.24 E-value=41 Score=15.23 Aligned_cols=32 Identities=16% Similarity=0.324 Sum_probs=28.3 Q ss_pred HHHHHHHHHHCCHHHHHHHHHHCCCCEEECCC Q ss_conf 89999999861826679999726400450498 Q 537021.9.peg.4 64 TKQLIELCEKNHDYKMVEMLQRFLHVVSFELG 95 (165) Q Consensus 64 f~~lveL~~~~rei~Lk~~Le~~VrLVsFe~G 95 (165) -..+|.++++-+-.--+-.-.+.|+||||+-. T Consensus 29 AQ~~V~~F~kT~TVs~HRKAQkAVNLv~F~~~ 60 (80) T 2noj_B 29 AQKAVELFKRTRTVATHRKAQRAVNLIHFQHS 60 (80) T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHCCCTTC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999875579988999987768878989 No 2 >>3fdj_A DEGV family protein; GUT microbiome,, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE P2K PG4; 1.80A {Eubacterium eligens} (A:118-278) Probab=24.70 E-value=51 Score=14.67 Aligned_cols=87 Identities=15% Similarity=0.099 Sum_probs=62.5 Q ss_pred HHCCHHHHHHHHHHCCC---CEEE-CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHCCHHHHHH Q ss_conf 86182667999972640---0450-4980899977899977999999999986099259999689741366539699999 Q 537021.9.peg.4 72 EKNHDYKMVEMLQRFLH---VVSF-ELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYFEIDSDIKAV 147 (165) Q Consensus 72 ~~~rei~Lk~~Le~~Vr---LVsF-e~GrIei~~~~~a~~~l~~~Ls~~L~~wTG~rW~VslS~g~~~e~~~~dp~V~av 147 (165) .--|=..+..-+-+-++ +++| +.|+|+..-.....+.....+-..+.+.......+.+.-+...+. ++.+...+ T Consensus 50 kgGRis~~~~~i~~lL~ikPIi~~~~~G~l~~~~k~R~~kka~~~~~~~~~~~~~~~~~~~i~~~~~~e~--~~~l~~~l 127 (161) T 3fdj_A 50 QNGRVSKVVASAAEVLGISVIGTASSHGTLEAIGKCRGDKKLLVKLQALLDDAGYEGGKLRICHVENEAL--ADKIADXI 127 (161) T ss_dssp HTTSSCHHHHHGGGSTTEEEEEEECTTSSEEEEEEEESHHHHHHHHHHHHHHHTCCSCCEEEEESSCHHH--HHHHHHHH T ss_pred HCCCCHHHHHHHHHHHCCEEEEEECCCCEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHH--HHHHHHHH T ss_conf 6783658899998622756899984688289988763288999999999997378998699998999999--99999999 Q ss_pred HHHCCCCEEEEEE Q ss_conf 9867997789877 Q 537021.9.peg.4 148 RTIFPTAQVVCIR 160 (165) Q Consensus 148 l~~FPgAeI~~VR 160 (165) .+.||..+|.-.. T Consensus 128 ~~~~~~~~i~~~~ 140 (161) T 3fdj_A 128 KQAYGTTDVCVYK 140 (161) T ss_dssp HHHHCCCCEEEEE T ss_pred HHHCCCCCEEEEE T ss_conf 9776998689998 No 3 >>1u69_A Hypothetical protein; structural genomics, MSCG, protein structure initiative (PSI), midwest center for structural genomics, MCSG; 1.60A {Pseudomonas aeruginosa PAO1} (A:1-73) Probab=23.19 E-value=55 Score=14.50 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=17.2 Q ss_pred HHHHHHHHCCCCEEEEEEECCC Q ss_conf 9999998679977898774588 Q 537021.9.peg.4 143 DIKAVRTIFPTAQVVCIRTIPN 164 (165) Q Consensus 143 ~V~avl~~FPgAeI~~VR~~p~ 164 (165) .+.=-.++||+++|..+.+.++ T Consensus 20 A~~fY~~vF~~~~i~~~~~~~~ 41 (73) T 1u69_A 20 AATFYAETFPDSAVLAVHRAPG 41 (73) T ss_dssp HHHHHHHHSTTEEEEEEEECSS T ss_pred HHHHHHHHCCCCEEEEEEECCC T ss_conf 9999999869987768985589 No 4 >>2gom_A Fibrinogen-binding protein; three-helix closed bundle with LEFT-hand twist, cell adhesion/toxin complex; 1.25A {Staphylococcus aureus} (A:) Probab=21.52 E-value=56 Score=14.46 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=26.3 Q ss_pred HHHHHHHHHCCHHHHHHHHHHCCCCEEECC Q ss_conf 999999986182667999972640045049 Q 537021.9.peg.4 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFEL 94 (165) Q Consensus 65 ~~lveL~~~~rei~Lk~~Le~~VrLVsFe~ 94 (165) ..+|.++++-+-.--+-.-.+.|+||+|+- T Consensus 11 Q~~V~~F~~T~TV~~HRKAQ~AVNLi~F~~ 40 (61) T 2gom_A 11 QNLVREFEKTHTVSAHRKAQKAVNLVSFEY 40 (61) T ss_dssp HHHHHHHHHHCBHHHHHHHHHHHHHSCGGG T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999987457998899998765777898 No 5 >>2aya_A DNA polymerase III subunit TAU; KH-fold, C-terminus of polymerase III TAU subunit, transferase; HET: DNA; NMR {Escherichia coli} (A:) Probab=21.05 E-value=61 Score=14.24 Aligned_cols=66 Identities=12% Similarity=-0.010 Sum_probs=47.6 Q ss_pred HHHHHHHHCCHHHHHHHHHHCCCCEEECCCEEEEEECCC----CCHHHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 999999861826679999726400450498089997789----9977999999999986099259999689 Q 537021.9.peg.4 66 QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKE----IPEDFIENLATKLKNWTGEDWEIRFSLG 132 (165) Q Consensus 66 ~lveL~~~~rei~Lk~~Le~~VrLVsFe~GrIei~~~~~----a~~~l~~~Ls~~L~~wTG~rW~VslS~g 132 (165) +=..++..-+=..|..+|=-|--|++ ..|.+.+.+.+. .......+|...|.++=|+.=.|.+..| T Consensus 25 ~W~~lv~~L~l~G~~rqLA~n~~l~~-~~~~l~L~L~~~~~~L~~~~~~~~L~~ALs~~~g~~i~l~I~~g 94 (128) T 2aya_A 25 PWAAQVSQLSLPKLVEQVALNAWKEE-SDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVED 94 (128) T ss_dssp HHHHHHHHHTCCSHHHHHHHTEEEEE-CSSEEEEEECGGGTTTCCHHHHHHHHHHHHHHHSSCCEEEEEEC T ss_pred HHHHHHHHCCCCHHHHHHHHHHHEEE-ECCEEEEEECHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEEC T ss_conf 17999997487279999998301465-38868999777877556899999999999999689868999878 No 6 >>2dvy_A Restriction endonuclease PABI; hydrolase; 3.00A {Pyrococcus abyssi} (A:1-27,A:72-135,A:184-226) Probab=20.26 E-value=46 Score=14.93 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=15.7 Q ss_pred CEEECCCEEEEEECCCCCHHHHHHHHH Q ss_conf 045049808999778999779999999 Q 537021.9.peg.4 89 VVSFELGRLEVSFLKEIPEDFIENLAT 115 (165) Q Consensus 89 LVsFe~GrIei~~~~~a~~~l~~~Ls~ 115 (165) -|||+.|+|.+++.-.-|...--.|++ T Consensus 10 svsfengkivvrlpitrpgkydyelsr 36 (134) T 2dvy_A 10 SVSFENGKIVVRLPITRPGKYDYELSR 36 (134) T ss_dssp EEEECSSSEEEEEESSSCSSSCSHHHH T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHH T ss_conf 888608769999841355316887999 No 7 >>1pzx_A Hypothetical protein APC36103; structural genomics, two domains containing mixed alpha/beta structures, PSI; HET: PLM; 2.00A {Geobacillus stearothermophilus} (A:30-65,A:159-289) Probab=20.07 E-value=64 Score=14.11 Aligned_cols=95 Identities=11% Similarity=-0.026 Sum_probs=66.9 Q ss_pred HHHHHHHHHCCHHHHHHHHHHCC---CCEEECCCEEEEEECCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCCHHHHH Q ss_conf 99999998618266799997264---00450498089997789997799999999998609--92599996897413665 Q 537021.9.peg.4 65 KQLIELCEKNHDYKMVEMLQRFL---HVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTG--EDWEIRFSLGRCCEYFE 139 (165) Q Consensus 65 ~~lveL~~~~rei~Lk~~Le~~V---rLVsFe~GrIei~~~~~a~~~l~~~Ls~~L~~wTG--~rW~VslS~g~~~e~~~ 139 (165) .+|-.|..--|=......+-+-+ =+++|+.|.+++.-.....+.....+-..+.+-.. ..+.+.++.+...+. T Consensus 44 ~~L~~L~kgGRIs~~aa~Ig~lLkIKPII~~~~G~i~~~~K~Rg~kka~~~li~~i~~~~~~~~~~~i~i~h~~~~e~-- 121 (167) T 1pzx_A 44 DNLDYLARGGRISKTAAAFGGLLNIKPLLHVEDGALIPLEKWRGRKKVLKRMVELMGERGDDLQKQTIGISHADDEET-- 121 (167) T ss_dssp SCHHHHHHHTSCC----------CEEEEEEEETTEEEEEEEEESHHHHHHHHHHHHHHHCSSGGGSEEEEEESSCHHH-- T ss_pred CCHHHHHHCCCCHHHHHHHHHHHCCEEEEEEECCEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHH-- T ss_conf 987999877972788999986017079999719879998887008999999999999862478873899990899999-- Q ss_pred CCHHHHHHHHHCCCCEEEEEEE Q ss_conf 3969999998679977898774 Q 537021.9.peg.4 140 IDSDIKAVRTIFPTAQVVCIRT 161 (165) Q Consensus 140 ~dp~V~avl~~FPgAeI~~VR~ 161 (165) ++-+.+.+.+.||..++.-... T Consensus 122 a~~l~~~l~~~~~~~~i~~~~~ 143 (167) T 1pzx_A 122 ALELKQMIEETHGCTRFFLSDI 143 (167) T ss_dssp HHHHHHHHHHHTCCCEEEEEEC T ss_pred HHHHHHHHHHHCCCCEEEEEEE T ss_conf 9999999987669972999984 No 8 >>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} (A:74-165) Probab=19.04 E-value=68 Score=13.98 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=23.8 Q ss_pred CCHHHHHHHHHHCCHHHHHHHHHHCCC Q ss_conf 448999999986182667999972640 Q 537021.9.peg.4 62 NYTKQLIELCEKNHDYKMVEMLQRFLH 88 (165) Q Consensus 62 nsf~~lveL~~~~rei~Lk~~Le~~Vr 88 (165) .++.+|+.+|.+.+|..+...|+.+|+ T Consensus 26 ~~i~~L~~~A~~~~D~~~~~FL~~Fi~ 52 (92) T 1eum_A 26 QKINELAHAAMTNQDYPTFNFLQWYVS 52 (92) T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 999999999988599989999999999 No 9 >>3fys_A Protein DEGV; fatty acid-binding, EDD fold, fatty acid-binding protein; HET: PLM; 2.50A {Bacillus subtilis} (A:188-315) Probab=15.70 E-value=81 Score=13.50 Aligned_cols=94 Identities=12% Similarity=0.049 Sum_probs=59.7 Q ss_pred HHHHHHHHCCHHHHHHHHHHCCC---CEEECCCEEEEEECCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCCHHHHHC Q ss_conf 99999986182667999972640---045049808999778999779999999999860--9925999968974136653 Q 537021.9.peg.4 66 QLIELCEKNHDYKMVEMLQRFLH---VVSFELGRLEVSFLKEIPEDFIENLATKLKNWT--GEDWEIRFSLGRCCEYFEI 140 (165) Q Consensus 66 ~lveL~~~~rei~Lk~~Le~~Vr---LVsFe~GrIei~~~~~a~~~l~~~Ls~~L~~wT--G~rW~VslS~g~~~e~~~~ 140 (165) +|-.|..--|=....+.+-+-++ .++|+.|++++--....-+.....+...+.+-. +..-.+.+..+...+ .+ T Consensus 10 ~L~~L~kgGRis~~~a~i~~lL~IkPii~~~~G~~~~~~K~Rg~kka~~~~~~~~~~~~~~~~~~~i~i~~~~~~e--~~ 87 (128) T 3fys_A 10 DLAHLQRGGRLSSAQAFIGSLLKVKPILHFDNKVIVPFEKIRTRKKAISRIYELLDEDASKGLPMRAAVIHANREE--EA 87 (128) T ss_dssp CTHHHHHHTTTHHHHHHHSSCCCSCEEEEEETTEEEEEEECSCHHHHHHHHHHHHHHHHTTCCCEEEEEEESSCHH--HH T ss_pred CHHHHHHCCCCCHHHHHHHHHCCCEEEEEEECCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHH--HH T ss_conf 8899987697753667665300405899983886887400157999999999999998506997089999798999--99 Q ss_pred CHHHHHHHHHCCCCEEEEEEE Q ss_conf 969999998679977898774 Q 537021.9.peg.4 141 DSDIKAVRTIFPTAQVVCIRT 161 (165) Q Consensus 141 dp~V~avl~~FPgAeI~~VR~ 161 (165) +-+.+.+.+.||..+|.-... T Consensus 88 ~~l~~~l~~~~~~~~i~~~~~ 108 (128) T 3fys_A 88 AKIIEELSAKYPHVEFYNSYF 108 (128) T ss_dssp HHHHHHHHHHCTTEEEEEEEC T ss_pred HHHHHHHHHHCCCCEEEEEEE T ss_conf 999999970679983999985 No 10 >>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A {Pseudo-nitzschia multiseries} PDB: 3e6r_A (A:74-168) Probab=15.32 E-value=83 Score=13.44 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=23.6 Q ss_pred CCHHHHHHHHHHCCHHHHHHHHHHCCC Q ss_conf 448999999986182667999972640 Q 537021.9.peg.4 62 NYTKQLIELCEKNHDYKMVEMLQRFLH 88 (165) Q Consensus 62 nsf~~lveL~~~~rei~Lk~~Le~~Vr 88 (165) .++.+|..+|.+.+|..+...|+.+|+ T Consensus 27 ~~i~~L~~~A~~~~D~~~~~FL~~Fi~ 53 (95) T 3e6s_A 27 RSLLNLAEAASTCHDFAVMAFLNPFHL 53 (95) T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 999999999988698879999999999 Done!