Query         537021.9.peg.473_1
Match_columns 165
No_of_seqs    132 out of 531
Neff          4.7 
Searched_HMMs 13730
Date          Wed May 25 00:50:45 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_473.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2nojb1 a.7.17.1 (B:52-109) Un  28.0      15  0.0011   15.5   2.1   31   65-95      8-38  (58)
  2 d2goma1 a.7.17.1 (A:105-165) F  20.7      24  0.0018   14.3   2.0   30   65-94     11-40  (61)
  3 d1zata2 d.335.1.1 (A:217-338)   15.7      23  0.0017   14.4   1.0   68   90-159    35-109 (122)
  4 d3cnva1 d.190.1.2 (A:98-259) P  13.9      37  0.0027   13.2   2.0   71   89-162    60-134 (162)
  5 d1wzua1 c.145.1.1 (A:1-298) Qu  13.0      39  0.0029   13.1   4.3   48  111-158   147-195 (298)
  6 d2noha2 d.129.1.2 (A:12-135) 8  12.9      40  0.0029   13.0   1.7   19  139-157   104-122 (124)
  7 d1mgpa_ c.119.1.1 (A:) Hypothe  11.0      46  0.0033   12.7   3.1   94   62-157   141-261 (285)
  8 d1neea1 d.241.1.1 (A:1-98) Tra  10.3      48  0.0035   12.5   5.1   58   60-118    40-97  (98)
  9 d1ycya1 b.38.1.4 (A:5-70) Hypo   9.9      50  0.0036   12.4   2.7   20  113-132     3-22  (66)
 10 d1chma1 c.55.2.1 (A:2-156) Cre   9.7      51  0.0037   12.4   2.6   20  142-161   130-149 (155)

No 1  
>d2nojb1 a.7.17.1 (B:52-109) Uncharacterized protein SAV1155 {Staphylococcus aureus [TaxId: 1280]}
Probab=28.03  E-value=15  Score=15.53  Aligned_cols=31  Identities=16%  Similarity=0.328  Sum_probs=27.2

Q ss_pred             HHHHHHHHHCCHHHHHHHHHHCCCCEEECCC
Q ss_conf             9999999861826679999726400450498
Q 537021.9.peg.4   65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELG   95 (165)
Q Consensus        65 ~~lveL~~~~rei~Lk~~Le~~VrLVsFe~G   95 (165)
                      ..+|+++++-+-.--+-.-.+.|+||||+-.
T Consensus         8 q~~v~~f~kt~tvs~hrkaqkavnlv~f~~~   38 (58)
T d2nojb1           8 QKAVELFKRTRTVATHRKAQRAVNLIHFQHS   38 (58)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHCCCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999874378988999987657667879


No 2  
>d2goma1 a.7.17.1 (A:105-165) Fibrinogen-binding protein Efb (Fib) {Staphylococcus aureus [TaxId: 1280]}
Probab=20.68  E-value=24  Score=14.30  Aligned_cols=30  Identities=30%  Similarity=0.419  Sum_probs=26.2

Q ss_pred             HHHHHHHHHCCHHHHHHHHHHCCCCEEECC
Q ss_conf             999999986182667999972640045049
Q 537021.9.peg.4   65 KQLIELCEKNHDYKMVEMLQRFLHVVSFEL   94 (165)
Q Consensus        65 ~~lveL~~~~rei~Lk~~Le~~VrLVsFe~   94 (165)
                      ..+|.++++-+-.--+-.-.+.|+||+|+-
T Consensus        11 Q~~V~~F~~T~TVs~HRKAQ~AVNLi~F~~   40 (61)
T d2goma1          11 QNLVREFEKTHTVSAHRKAQKAVNLVSFEY   40 (61)
T ss_dssp             HHHHHHHHHHCBHHHHHHHHHHHHHSCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999987667998899998765777898


No 3  
>d1zata2 d.335.1.1 (A:217-338) L,D-transpeptidase, pre-catalytic domain {Enterococcus faecium [TaxId: 1352]}
Probab=15.67  E-value=23  Score=14.40  Aligned_cols=68  Identities=19%  Similarity=0.300  Sum_probs=44.3

Q ss_pred             EEECCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCE-------EEEEECCCCHHHHHCCHHHHHHHHHCCCCEEEEE
Q ss_conf             450498089997789997799999999998609925-------9999689741366539699999986799778987
Q 537021.9.peg.4   90 VSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDW-------EIRFSLGRCCEYFEIDSDIKAVRTIFPTAQVVCI  159 (165)
Q Consensus        90 VsFe~GrIei~~~~~a~~~l~~~Ls~~L~~wTG~rW-------~VslS~g~~~e~~~~dp~V~avl~~FPgAeI~~V  159 (165)
                      ++|..|  .+.+.+.+=++++.+|+.+....-..|.       .|++++|-=.=.|..+..++++++++-.-+-++.
T Consensus        35 l~~dd~--~v~~d~~~v~~yV~~La~ky~T~gk~r~F~t~~G~titV~gG~YGW~Id~~~e~~~L~~~i~~G~~v~r  109 (122)
T d1zata2          35 LTYNDG--KVDLDTEQVRQYVTDLGTKYNTSTNDTKFKSTKRGEVTVPVGTYSWTIQTDSETEALKKAILAGQDFTR  109 (122)
T ss_dssp             EEEETT--EEEECHHHHHHHHHHHHHHHCTTTSCEEEECSSSSEEEECCCSSCEEECHHHHHHHHHHHHHHTSCEEE
T ss_pred             EEECCC--CEEECHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCCEEECHHHHHHHHHHHHHCCCCEEE
T ss_conf             897699--188889999999999998607789846889289999999189763588679999999999985995575


No 4  
>d3cnva1 d.190.1.2 (A:98-259) Putative transcriptional regulator BB3683 {Bordetella bronchiseptica [TaxId: 518]}
Probab=13.90  E-value=37  Score=13.21  Aligned_cols=71  Identities=8%  Similarity=0.032  Sum_probs=34.2

Q ss_pred             CEEECCCEEEEEECCCCCHHHHH----HHHHHHHHHCCCCEEEEEECCCCHHHHHCCHHHHHHHHHCCCCEEEEEEEC
Q ss_conf             04504980899977899977999----999999986099259999689741366539699999986799778987745
Q 537021.9.peg.4   89 VVSFELGRLEVSFLKEIPEDFIE----NLATKLKNWTGEDWEIRFSLGRCCEYFEIDSDIKAVRTIFPTAQVVCIRTI  162 (165)
Q Consensus        89 LVsFe~GrIei~~~~~a~~~l~~----~Ls~~L~~wTG~rW~VslS~g~~~e~~~~dp~V~avl~~FPgAeI~~VR~~  162 (165)
                      ++.++.-.|-....++.+.....    .+-..|..-.|.+..=.-   .......+++..++.|..-||+-+..|+..
T Consensus        60 P~~~~~~ylp~~~~~~~~~~~~~~~~~sl~~~l~~~~g~~~~~~~---~~i~a~~a~~~~a~~L~~~~~~p~l~i~r~  134 (162)
T d3cnva1          60 PTVIDDLWLPGTHFRGLTLELLTASKAPLYGLFESEFGVSMVRAD---EKLRAVAASPEIAPLLGVEPGRPLLQVDRI  134 (162)
T ss_dssp             EEEEEEEEEEGGGCTTCCHHHHHHCCCCHHHHHHHHHCCCEEEEE---EEEEEEECCTTTHHHHTCCTTCEEEEEEEE
T ss_pred             EEEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEHHHCCEEEEEEE---EEEEEECCCHHHHHHCCCCCCCEEEEEEEE
T ss_conf             499999971588860335666522688515777344791425668---999987699999975596999849999999


No 5  
>d1wzua1 c.145.1.1 (A:1-298) Quinolinate synthetase A, NadA {Pyrococcus horikoshii [TaxId: 53953]}
Probab=13.05  E-value=39  Score=13.06  Aligned_cols=48  Identities=23%  Similarity=0.326  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHCCCCEEEEEECCCCHHHHHC-CHHHHHHHHHCCCCEEEE
Q ss_conf             999999998609925999968974136653-969999998679977898
Q 537021.9.peg.4  111 ENLATKLKNWTGEDWEIRFSLGRCCEYFEI-DSDIKAVRTIFPTAQVVC  158 (165)
Q Consensus       111 ~~Ls~~L~~wTG~rW~VslS~g~~~e~~~~-dp~V~avl~~FPgAeI~~  158 (165)
                      +.|++.+...||++=++-...|.+.-+.+- -..|..+...+|+|+|+.
T Consensus       147 ~~Lg~~~~~~~g~~~~~~~w~G~C~VH~~f~~~~i~~~r~~~P~a~vlv  195 (298)
T d1wzua1         147 KNLAHYVAKMTGKKIIPVPSKGHCYVHQKFTLDDVERAKKLHPNAKLMI  195 (298)
T ss_dssp             HHHHHHHHHHHCCEEEEC-----------CCHHHHHHHHHHCTTCEEEE
T ss_pred             CHHHHHHHHHCCCCEEEECCCCCCCHHHEECHHHHHHHHHHCCCCEEEE
T ss_conf             0088888775223401100588662655366999999998599953996


No 6  
>d2noha2 d.129.1.2 (A:12-135) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.86  E-value=40  Score=13.03  Aligned_cols=19  Identities=21%  Similarity=0.434  Sum_probs=16.6

Q ss_pred             HCCHHHHHHHHHCCCCEEE
Q ss_conf             5396999999867997789
Q 537021.9.peg.4  139 EIDSDIKAVRTIFPTAQVV  157 (165)
Q Consensus       139 ~~dp~V~avl~~FPgAeI~  157 (165)
                      ++||.++.+.+.|||..|.
T Consensus       104 ~~D~~~~~~~~~~~GiRIL  122 (124)
T d2noha2         104 SVDSHFQEVAQKFQGVRLL  122 (124)
T ss_dssp             HHCHHHHHHHHHCTTCCCC
T ss_pred             HCCHHHHHHHHCCCCEEEE
T ss_conf             4088999998719961772


No 7  
>d1mgpa_ c.119.1.1 (A:) Hypothetical protein TM841 {Thermotoga maritima [TaxId: 2336]}
Probab=10.99  E-value=46  Score=12.67  Aligned_cols=94  Identities=14%  Similarity=0.088  Sum_probs=56.1

Q ss_pred             CCHHHHHHHHHHCCH---HH------HHHHHHHCCC----------------CEEECCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf             448999999986182---66------7999972640----------------0450498089997789997799999999
Q 537021.9.peg.4   62 NYTKQLIELCEKNHD---YK------MVEMLQRFLH----------------VVSFELGRLEVSFLKEIPEDFIENLATK  116 (165)
Q Consensus        62 nsf~~lveL~~~~re---i~------Lk~~Le~~Vr----------------LVsFe~GrIei~~~~~a~~~l~~~Ls~~  116 (165)
                      .+|+++++.++..++   +.      =..+|.+.-|                +++|+.|.++..-.....+.....|-..
T Consensus       141 ~s~~ei~~~l~~~~~~~~~~~~~~v~~L~~L~kgGRi~~~~a~ig~~L~ikPIl~~~~G~i~~~~k~R~~kka~~~l~~~  220 (285)
T d1mgpa_         141 ATIEEVLKKLDERMKNKDFKAIFYVSNFDYLVKGGRVSKFQGFVGNLLKIRVCLHIENGELIPYRKVRGDKKAIEALIEK  220 (285)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEEEESCTHHHHHHTCC---------CTTEEEEEEEETTEEEEEEEEESHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHCCEEHHHHHHHHHHHCCEEEEEECCCEEEEEEEEHHHHHHHHHHHHH
T ss_conf             99999999999986437069999918889997589016889998876365477894398699987751188999999999


Q ss_pred             HHHHCCC--CEEEEEECCCCHHHHHCCHHHHHHHHHCCCCEEE
Q ss_conf             9986099--2599996897413665396999999867997789
Q 537021.9.peg.4  117 LKNWTGE--DWEIRFSLGRCCEYFEIDSDIKAVRTIFPTAQVV  157 (165)
Q Consensus       117 L~~wTG~--rW~VslS~g~~~e~~~~dp~V~avl~~FPgAeI~  157 (165)
                      +.++-+.  .-.+.++.+..  ..+++-+.+.+...||..++.
T Consensus       221 ~~~~~~~~~~~~~~i~~~~~--~e~a~~l~~~l~~~~~~~~i~  261 (285)
T d1mgpa_         221 LREDTPEGSKLRVIGVHADN--EAGVVELLNTLRKSYEVVDEI  261 (285)
T ss_dssp             HHTTSCTTCEEEEEEEESSC--HHHHHHHHHHHTTTSEEEEEE
T ss_pred             HHHHHCCCCCEEEEEEECCC--HHHHHHHHHHHHHHCCCCCEE
T ss_conf             99862158971999996989--999999999998567998699


No 8  
>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=10.28  E-value=48  Score=12.52  Aligned_cols=58  Identities=10%  Similarity=-0.007  Sum_probs=46.0

Q ss_pred             CCCCHHHHHHHHHHCCHHHHHHHHHHCCCCEEECCCEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             12448999999986182667999972640045049808999778999779999999999
Q 537021.9.peg.4   60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLK  118 (165)
Q Consensus        60 ~~nsf~~lveL~~~~rei~Lk~~Le~~VrLVsFe~GrIei~~~~~a~~~l~~~Ls~~L~  118 (165)
                      -+.+|.++..-....-+..++|-+..---..+++.|++-|. ....+.++-.-|.+++.
T Consensus        40 ii~Nf~~Ia~~L~R~p~hl~kfl~~ELgt~g~i~~~~lii~-G~~~~~~i~~~l~~yI~   97 (98)
T d1neea1          40 FIQNFREVADALNRDPQHLLKFLLRELGTAGNLEGGRAILQ-GKFTHFLINERIEDYVN   97 (98)
T ss_dssp             EESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCBTTTEEEE-SSCSSSHHHHHHHHHHT
T ss_pred             EEECHHHHHHHHCCCHHHHHHHHHHHHCCCEEEECCEEEEE-EEECHHHHHHHHHHHHC
T ss_conf             88526999988798989999999998587248748999999-66689999999999851


No 9  
>d1ycya1 b.38.1.4 (A:5-70) Hypothetical protein PF1955 {Pyrococcus furiosus [TaxId: 2261]}
Probab=9.92  E-value=50  Score=12.45  Aligned_cols=20  Identities=25%  Similarity=0.481  Sum_probs=16.4

Q ss_pred             HHHHHHHHCCCCEEEEEECC
Q ss_conf             99999986099259999689
Q 537021.9.peg.4  113 LATKLKNWTGEDWEIRFSLG  132 (165)
Q Consensus       113 Ls~~L~~wTG~rW~VslS~g  132 (165)
                      |-+.|.+|-|+|=.|+++..
T Consensus         3 LdktL~~WKg~kvAv~vgse   22 (66)
T d1ycya1           3 LEKVLKEWKGHKVAVSVGGD   22 (66)
T ss_dssp             HHHHHHHHTTSEEEEEEC--
T ss_pred             HHHHHHHHCCCEEEEEECCC
T ss_conf             78799984795799996684


No 10 
>d1chma1 c.55.2.1 (A:2-156) Creatinase {Pseudomonas putida [TaxId: 303]}
Probab=9.74  E-value=51  Score=12.40  Aligned_cols=20  Identities=15%  Similarity=0.358  Sum_probs=16.0

Q ss_pred             HHHHHHHHHCCCCEEEEEEE
Q ss_conf             69999998679977898774
Q 537021.9.peg.4  142 SDIKAVRTIFPTAQVVCIRT  161 (165)
Q Consensus       142 p~V~avl~~FPgAeI~~VR~  161 (165)
                      ....++.+.||++++|++-.
T Consensus       130 ~~~~~L~~~lp~~~~vd~s~  149 (155)
T d1chma1         130 QNRDKLAARYPDAELVDVAA  149 (155)
T ss_dssp             HHHHHHHHHCTTCEEEECHH
T ss_pred             HHHHHHHHHCCCCEEEEHHH
T ss_conf             99999997689998988089


Done!