Query 537021.9.peg.473_1 Match_columns 165 No_of_seqs 132 out of 531 Neff 4.7 Searched_HMMs 13730 Date Wed May 25 00:50:45 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_473.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2nojb1 a.7.17.1 (B:52-109) Un 28.0 15 0.0011 15.5 2.1 31 65-95 8-38 (58) 2 d2goma1 a.7.17.1 (A:105-165) F 20.7 24 0.0018 14.3 2.0 30 65-94 11-40 (61) 3 d1zata2 d.335.1.1 (A:217-338) 15.7 23 0.0017 14.4 1.0 68 90-159 35-109 (122) 4 d3cnva1 d.190.1.2 (A:98-259) P 13.9 37 0.0027 13.2 2.0 71 89-162 60-134 (162) 5 d1wzua1 c.145.1.1 (A:1-298) Qu 13.0 39 0.0029 13.1 4.3 48 111-158 147-195 (298) 6 d2noha2 d.129.1.2 (A:12-135) 8 12.9 40 0.0029 13.0 1.7 19 139-157 104-122 (124) 7 d1mgpa_ c.119.1.1 (A:) Hypothe 11.0 46 0.0033 12.7 3.1 94 62-157 141-261 (285) 8 d1neea1 d.241.1.1 (A:1-98) Tra 10.3 48 0.0035 12.5 5.1 58 60-118 40-97 (98) 9 d1ycya1 b.38.1.4 (A:5-70) Hypo 9.9 50 0.0036 12.4 2.7 20 113-132 3-22 (66) 10 d1chma1 c.55.2.1 (A:2-156) Cre 9.7 51 0.0037 12.4 2.6 20 142-161 130-149 (155) No 1 >d2nojb1 a.7.17.1 (B:52-109) Uncharacterized protein SAV1155 {Staphylococcus aureus [TaxId: 1280]} Probab=28.03 E-value=15 Score=15.53 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=27.2 Q ss_pred HHHHHHHHHCCHHHHHHHHHHCCCCEEECCC Q ss_conf 9999999861826679999726400450498 Q 537021.9.peg.4 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELG 95 (165) Q Consensus 65 ~~lveL~~~~rei~Lk~~Le~~VrLVsFe~G 95 (165) ..+|+++++-+-.--+-.-.+.|+||||+-. T Consensus 8 q~~v~~f~kt~tvs~hrkaqkavnlv~f~~~ 38 (58) T d2nojb1 8 QKAVELFKRTRTVATHRKAQRAVNLIHFQHS 38 (58) T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHCCCTTC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999874378988999987657667879 No 2 >d2goma1 a.7.17.1 (A:105-165) Fibrinogen-binding protein Efb (Fib) {Staphylococcus aureus [TaxId: 1280]} Probab=20.68 E-value=24 Score=14.30 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=26.2 Q ss_pred HHHHHHHHHCCHHHHHHHHHHCCCCEEECC Q ss_conf 999999986182667999972640045049 Q 537021.9.peg.4 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFEL 94 (165) Q Consensus 65 ~~lveL~~~~rei~Lk~~Le~~VrLVsFe~ 94 (165) ..+|.++++-+-.--+-.-.+.|+||+|+- T Consensus 11 Q~~V~~F~~T~TVs~HRKAQ~AVNLi~F~~ 40 (61) T d2goma1 11 QNLVREFEKTHTVSAHRKAQKAVNLVSFEY 40 (61) T ss_dssp HHHHHHHHHHCBHHHHHHHHHHHHHSCGGG T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999987667998899998765777898 No 3 >d1zata2 d.335.1.1 (A:217-338) L,D-transpeptidase, pre-catalytic domain {Enterococcus faecium [TaxId: 1352]} Probab=15.67 E-value=23 Score=14.40 Aligned_cols=68 Identities=19% Similarity=0.300 Sum_probs=44.3 Q ss_pred EEECCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCE-------EEEEECCCCHHHHHCCHHHHHHHHHCCCCEEEEE Q ss_conf 450498089997789997799999999998609925-------9999689741366539699999986799778987 Q 537021.9.peg.4 90 VSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDW-------EIRFSLGRCCEYFEIDSDIKAVRTIFPTAQVVCI 159 (165) Q Consensus 90 VsFe~GrIei~~~~~a~~~l~~~Ls~~L~~wTG~rW-------~VslS~g~~~e~~~~dp~V~avl~~FPgAeI~~V 159 (165) ++|..| .+.+.+.+=++++.+|+.+....-..|. .|++++|-=.=.|..+..++++++++-.-+-++. T Consensus 35 l~~dd~--~v~~d~~~v~~yV~~La~ky~T~gk~r~F~t~~G~titV~gG~YGW~Id~~~e~~~L~~~i~~G~~v~r 109 (122) T d1zata2 35 LTYNDG--KVDLDTEQVRQYVTDLGTKYNTSTNDTKFKSTKRGEVTVPVGTYSWTIQTDSETEALKKAILAGQDFTR 109 (122) T ss_dssp EEEETT--EEEECHHHHHHHHHHHHHHHCTTTSCEEEECSSSSEEEECCCSSCEEECHHHHHHHHHHHHHHTSCEEE T ss_pred EEECCC--CEEECHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCCEEECHHHHHHHHHHHHHCCCCEEE T ss_conf 897699--188889999999999998607789846889289999999189763588679999999999985995575 No 4 >d3cnva1 d.190.1.2 (A:98-259) Putative transcriptional regulator BB3683 {Bordetella bronchiseptica [TaxId: 518]} Probab=13.90 E-value=37 Score=13.21 Aligned_cols=71 Identities=8% Similarity=0.032 Sum_probs=34.2 Q ss_pred CEEECCCEEEEEECCCCCHHHHH----HHHHHHHHHCCCCEEEEEECCCCHHHHHCCHHHHHHHHHCCCCEEEEEEEC Q ss_conf 04504980899977899977999----999999986099259999689741366539699999986799778987745 Q 537021.9.peg.4 89 VVSFELGRLEVSFLKEIPEDFIE----NLATKLKNWTGEDWEIRFSLGRCCEYFEIDSDIKAVRTIFPTAQVVCIRTI 162 (165) Q Consensus 89 LVsFe~GrIei~~~~~a~~~l~~----~Ls~~L~~wTG~rW~VslS~g~~~e~~~~dp~V~avl~~FPgAeI~~VR~~ 162 (165) ++.++.-.|-....++.+..... .+-..|..-.|.+..=.- .......+++..++.|..-||+-+..|+.. T Consensus 60 P~~~~~~ylp~~~~~~~~~~~~~~~~~sl~~~l~~~~g~~~~~~~---~~i~a~~a~~~~a~~L~~~~~~p~l~i~r~ 134 (162) T d3cnva1 60 PTVIDDLWLPGTHFRGLTLELLTASKAPLYGLFESEFGVSMVRAD---EKLRAVAASPEIAPLLGVEPGRPLLQVDRI 134 (162) T ss_dssp EEEEEEEEEEGGGCTTCCHHHHHHCCCCHHHHHHHHHCCCEEEEE---EEEEEEECCTTTHHHHTCCTTCEEEEEEEE T ss_pred EEEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEHHHCCEEEEEEE---EEEEEECCCHHHHHHCCCCCCCEEEEEEEE T ss_conf 499999971588860335666522688515777344791425668---999987699999975596999849999999 No 5 >d1wzua1 c.145.1.1 (A:1-298) Quinolinate synthetase A, NadA {Pyrococcus horikoshii [TaxId: 53953]} Probab=13.05 E-value=39 Score=13.06 Aligned_cols=48 Identities=23% Similarity=0.326 Sum_probs=34.6 Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCHHHHHC-CHHHHHHHHHCCCCEEEE Q ss_conf 999999998609925999968974136653-969999998679977898 Q 537021.9.peg.4 111 ENLATKLKNWTGEDWEIRFSLGRCCEYFEI-DSDIKAVRTIFPTAQVVC 158 (165) Q Consensus 111 ~~Ls~~L~~wTG~rW~VslS~g~~~e~~~~-dp~V~avl~~FPgAeI~~ 158 (165) +.|++.+...||++=++-...|.+.-+.+- -..|..+...+|+|+|+. T Consensus 147 ~~Lg~~~~~~~g~~~~~~~w~G~C~VH~~f~~~~i~~~r~~~P~a~vlv 195 (298) T d1wzua1 147 KNLAHYVAKMTGKKIIPVPSKGHCYVHQKFTLDDVERAKKLHPNAKLMI 195 (298) T ss_dssp HHHHHHHHHHHCCEEEEC-----------CCHHHHHHHHHHCTTCEEEE T ss_pred CHHHHHHHHHCCCCEEEECCCCCCCHHHEECHHHHHHHHHHCCCCEEEE T ss_conf 0088888775223401100588662655366999999998599953996 No 6 >d2noha2 d.129.1.2 (A:12-135) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Probab=12.86 E-value=40 Score=13.03 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=16.6 Q ss_pred HCCHHHHHHHHHCCCCEEE Q ss_conf 5396999999867997789 Q 537021.9.peg.4 139 EIDSDIKAVRTIFPTAQVV 157 (165) Q Consensus 139 ~~dp~V~avl~~FPgAeI~ 157 (165) ++||.++.+.+.|||..|. T Consensus 104 ~~D~~~~~~~~~~~GiRIL 122 (124) T d2noha2 104 SVDSHFQEVAQKFQGVRLL 122 (124) T ss_dssp HHCHHHHHHHHHCTTCCCC T ss_pred HCCHHHHHHHHCCCCEEEE T ss_conf 4088999998719961772 No 7 >d1mgpa_ c.119.1.1 (A:) Hypothetical protein TM841 {Thermotoga maritima [TaxId: 2336]} Probab=10.99 E-value=46 Score=12.67 Aligned_cols=94 Identities=14% Similarity=0.088 Sum_probs=56.1 Q ss_pred CCHHHHHHHHHHCCH---HH------HHHHHHHCCC----------------CEEECCCEEEEEECCCCCHHHHHHHHHH Q ss_conf 448999999986182---66------7999972640----------------0450498089997789997799999999 Q 537021.9.peg.4 62 NYTKQLIELCEKNHD---YK------MVEMLQRFLH----------------VVSFELGRLEVSFLKEIPEDFIENLATK 116 (165) Q Consensus 62 nsf~~lveL~~~~re---i~------Lk~~Le~~Vr----------------LVsFe~GrIei~~~~~a~~~l~~~Ls~~ 116 (165) .+|+++++.++..++ +. =..+|.+.-| +++|+.|.++..-.....+.....|-.. T Consensus 141 ~s~~ei~~~l~~~~~~~~~~~~~~v~~L~~L~kgGRi~~~~a~ig~~L~ikPIl~~~~G~i~~~~k~R~~kka~~~l~~~ 220 (285) T d1mgpa_ 141 ATIEEVLKKLDERMKNKDFKAIFYVSNFDYLVKGGRVSKFQGFVGNLLKIRVCLHIENGELIPYRKVRGDKKAIEALIEK 220 (285) T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEEESCTHHHHHHTCC---------CTTEEEEEEEETTEEEEEEEEESHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHCCEEHHHHHHHHHHHCCEEEEEECCCEEEEEEEEHHHHHHHHHHHHH T ss_conf 99999999999986437069999918889997589016889998876365477894398699987751188999999999 Q ss_pred HHHHCCC--CEEEEEECCCCHHHHHCCHHHHHHHHHCCCCEEE Q ss_conf 9986099--2599996897413665396999999867997789 Q 537021.9.peg.4 117 LKNWTGE--DWEIRFSLGRCCEYFEIDSDIKAVRTIFPTAQVV 157 (165) Q Consensus 117 L~~wTG~--rW~VslS~g~~~e~~~~dp~V~avl~~FPgAeI~ 157 (165) +.++-+. .-.+.++.+.. ..+++-+.+.+...||..++. T Consensus 221 ~~~~~~~~~~~~~~i~~~~~--~e~a~~l~~~l~~~~~~~~i~ 261 (285) T d1mgpa_ 221 LREDTPEGSKLRVIGVHADN--EAGVVELLNTLRKSYEVVDEI 261 (285) T ss_dssp HHTTSCTTCEEEEEEEESSC--HHHHHHHHHHHTTTSEEEEEE T ss_pred HHHHHCCCCCEEEEEEECCC--HHHHHHHHHHHHHHCCCCCEE T ss_conf 99862158971999996989--999999999998567998699 No 8 >d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=10.28 E-value=48 Score=12.52 Aligned_cols=58 Identities=10% Similarity=-0.007 Sum_probs=46.0 Q ss_pred CCCCHHHHHHHHHHCCHHHHHHHHHHCCCCEEECCCEEEEEECCCCCHHHHHHHHHHHH Q ss_conf 12448999999986182667999972640045049808999778999779999999999 Q 537021.9.peg.4 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLK 118 (165) Q Consensus 60 ~~nsf~~lveL~~~~rei~Lk~~Le~~VrLVsFe~GrIei~~~~~a~~~l~~~Ls~~L~ 118 (165) -+.+|.++..-....-+..++|-+..---..+++.|++-|. ....+.++-.-|.+++. T Consensus 40 ii~Nf~~Ia~~L~R~p~hl~kfl~~ELgt~g~i~~~~lii~-G~~~~~~i~~~l~~yI~ 97 (98) T d1neea1 40 FIQNFREVADALNRDPQHLLKFLLRELGTAGNLEGGRAILQ-GKFTHFLINERIEDYVN 97 (98) T ss_dssp EESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCBTTTEEEE-SSCSSSHHHHHHHHHHT T ss_pred EEECHHHHHHHHCCCHHHHHHHHHHHHCCCEEEECCEEEEE-EEECHHHHHHHHHHHHC T ss_conf 88526999988798989999999998587248748999999-66689999999999851 No 9 >d1ycya1 b.38.1.4 (A:5-70) Hypothetical protein PF1955 {Pyrococcus furiosus [TaxId: 2261]} Probab=9.92 E-value=50 Score=12.45 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=16.4 Q ss_pred HHHHHHHHCCCCEEEEEECC Q ss_conf 99999986099259999689 Q 537021.9.peg.4 113 LATKLKNWTGEDWEIRFSLG 132 (165) Q Consensus 113 Ls~~L~~wTG~rW~VslS~g 132 (165) |-+.|.+|-|+|=.|+++.. T Consensus 3 LdktL~~WKg~kvAv~vgse 22 (66) T d1ycya1 3 LEKVLKEWKGHKVAVSVGGD 22 (66) T ss_dssp HHHHHHHHTTSEEEEEEC-- T ss_pred HHHHHHHHCCCEEEEEECCC T ss_conf 78799984795799996684 No 10 >d1chma1 c.55.2.1 (A:2-156) Creatinase {Pseudomonas putida [TaxId: 303]} Probab=9.74 E-value=51 Score=12.40 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=16.0 Q ss_pred HHHHHHHHHCCCCEEEEEEE Q ss_conf 69999998679977898774 Q 537021.9.peg.4 142 SDIKAVRTIFPTAQVVCIRT 161 (165) Q Consensus 142 p~V~avl~~FPgAeI~~VR~ 161 (165) ....++.+.||++++|++-. T Consensus 130 ~~~~~L~~~lp~~~~vd~s~ 149 (155) T d1chma1 130 QNRDKLAARYPDAELVDVAA 149 (155) T ss_dssp HHHHHHHHHCTTCEEEECHH T ss_pred HHHHHHHHHCCCCEEEEHHH T ss_conf 99999997689998988089 Done!