BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= 537021.9.peg.473_1
(165 letters)
Database: nr
13,984,884 sequences; 4,792,584,752 total letters
Searching..................................................done
Results from round 1
>gi|315121979|ref|YP_004062468.1| DNA polymerase III subunits gamma and tau [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495381|gb|ADR51980.1| DNA polymerase III subunits gamma and tau [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 151
Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 68/135 (50%), Positives = 95/135 (70%), Gaps = 1/135 (0%)
Query: 28 LPRNISSDECFPLAEAGITEKQDVLN-RLSACTPDNYTKQLIELCEKNHDYKMVEMLQRF 86
+ ++I S++ FP + + EK ++L+ LS+ D+Y ++L ELCE NHD + EM Q+F
Sbjct: 13 IQKDIPSNKSFPSGDNEVVEKPNMLSVELSSRASDDYMERLTELCENNHDDNLKEMSQKF 72
Query: 87 LHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYFEIDSDIKA 146
L V FE+G LEV+ K+ PE F+ENL LKNWTG++WEIRF+L +C + F I +DI+A
Sbjct: 73 LRVFYFEIGILEVACSKDAPEGFVENLVKNLKNWTGKNWEIRFALEQCYDNFRIGADIQA 132
Query: 147 VRTIFPTAQVVCIRT 161
VR IFP AQVV IRT
Sbjct: 133 VRAIFPNAQVVSIRT 147
>gi|15963983|ref|NP_384336.1| DNA polymerase III subunits gamma and tau [Sinorhizobium meliloti
1021]
gi|15073159|emb|CAC41667.1| Putative DNA polymerase III subunit TAU protein [Sinorhizobium
meliloti 1021]
Length = 626
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKN 119
P N + +LC KN D K+ M++ FL +V E GRL+V+ ++ P+ + LA KLK
Sbjct: 481 PVNSIGDIADLCAKNRDIKLKTMVRGFLRLVHIEPGRLDVNLPEDAPKTLLNELAVKLKE 540
Query: 120 WTGEDWEIRFSL-----------GRCCEY----FEIDSDIKAVRTIFPTAQVVCIR 160
WTG W + +S R E D D+ A+ FP A++ +R
Sbjct: 541 WTGIHWVVSYSREQGEPTLVEAEQRAQEQRVNDARQDPDVAAILARFPGARITDVR 596
>gi|307306395|ref|ZP_07586139.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium meliloti
BL225C]
gi|306902237|gb|EFN32834.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium meliloti
BL225C]
Length = 626
Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKN 119
P N + +LC KN D K+ M++ FL +V E GRL+V+ + P+ + LA KLK
Sbjct: 481 PVNSIGDIADLCAKNRDIKLKTMVRGFLRLVHIEPGRLDVNLPDDAPKTLLNELAVKLKE 540
Query: 120 WTGEDWEIRFSL-----------GRCCEY----FEIDSDIKAVRTIFPTAQVVCIR 160
WTG W + +S R E D D+ A+ FP A++ +R
Sbjct: 541 WTGIHWVVSYSREQGEPTLVEAEQRAQEQRVNDARQDPDVAAILARFPGARITDVR 596
>gi|307319282|ref|ZP_07598711.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium meliloti
AK83]
gi|306895118|gb|EFN25875.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium meliloti
AK83]
Length = 626
Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKN 119
P N + +LC KN D K+ M++ FL +V E GRL+V+ + P+ + LA KLK
Sbjct: 481 PVNSIGDIADLCAKNRDIKLKTMVRGFLRLVHIEPGRLDVNLPDDAPKTLLNELAVKLKE 540
Query: 120 WTGEDWEIRFSL-----------GRCCEY----FEIDSDIKAVRTIFPTAQVVCIR 160
WTG W + +S R E D D+ A+ FP A++ +R
Sbjct: 541 WTGIHWVVSYSREQGEPTLVEAEQRAQEQRVNDARQDPDVAAILARFPGARITDVR 596
>gi|227824061|ref|YP_002828034.1| DNA polymerase III subunits gamma and tau [Sinorhizobium fredii
NGR234]
gi|227343063|gb|ACP27281.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium fredii
NGR234]
Length = 645
Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKN 119
P N + +LC KN D K+ +++ FL +V E GRL+V+ + P+ + LA KLK
Sbjct: 500 PVNSVGDIADLCAKNRDIKLKTLVRGFLRLVHIEPGRLDVNLSDDAPKTLLNELAVKLKE 559
Query: 120 WTGEDWEIRFSL-----------GRCCEY----FEIDSDIKAVRTIFPTAQVVCIR 160
WTG W + +S R E D D+ A+ FP A++ +R
Sbjct: 560 WTGIHWVVSYSREPGEPTLVEAEQRAQEQRVNDARQDPDVAAILARFPGARITDVR 615
>gi|150398618|ref|YP_001329085.1| DNA polymerase III subunits gamma and tau [Sinorhizobium medicae
WSM419]
gi|150030133|gb|ABR62250.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium medicae
WSM419]
Length = 625
Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKN 119
P N + +LC KN D K+ +++ FL +V E GRL+V+ + P+ + LA KLK
Sbjct: 480 PVNSVGDIADLCAKNRDIKLKTLVRGFLRLVHIEPGRLDVNLPDDAPKTLLNELAVKLKE 539
Query: 120 WTGEDWEIRFS 130
WTG W + +S
Sbjct: 540 WTGIHWVVSYS 550
>gi|90419786|ref|ZP_01227695.1| DNA polymerase III, subunits gamma/tau [Aurantimonas manganoxydans
SI85-9A1]
gi|90335827|gb|EAS49575.1| DNA polymerase III, subunits gamma/tau [Aurantimonas manganoxydans
SI85-9A1]
Length = 639
Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+QL+ L E D M ++R+L +V GR+EV+ E P I +L KL +WTG
Sbjct: 493 EQLVALSESKRDSLMTVSIRRYLRLVKLVPGRIEVALTPEAPRTLITDLTRKLHDWTGRR 552
Query: 125 WEIRFSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVVCIR 160
W + S G E D ++ A+ FP A+VV +R
Sbjct: 553 WVVTISNGEAKPTLDEVATARRNTLLLDAESDPEVAAILASFPGAKVVDVR 603
>gi|241207078|ref|YP_002978174.1| DNA polymerase III subunits gamma/tau [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240860968|gb|ACS58635.1| DNA polymerase III, subunits gamma and tau [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length = 625
Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 55 LSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLA 114
L P N ++ L + D K+ M++ FL V E GRL+VS P + LA
Sbjct: 472 LKPLVPVNSVNDIVNLATEKRDPKLKAMVRTFLRPVRIEAGRLDVSLAPGAPTTLLNELA 531
Query: 115 TKLKNWTGEDWEIRFSL-----------GRCCEYFEIDS----DIKAVRTIFPTAQVVCI 159
KLK WTG W + S R E ID+ D+ A+ FP A+++ +
Sbjct: 532 VKLKEWTGIHWIVSLSRDEGQPTLVEAEARTREQHVIDARQDPDVAAILAHFPGAKIIDV 591
Query: 160 R 160
R
Sbjct: 592 R 592
>gi|116249901|ref|YP_765739.1| DNA polymerase III subunits gamma and tau [Rhizobium leguminosarum
bv. viciae 3841]
gi|115254549|emb|CAK05623.1| putative DNA polymerase III [Rhizobium leguminosarum bv. viciae
3841]
Length = 625
Score = 57.8 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKN 119
P N ++ L + D K+ M++ FL V E GRL+VS P + LA KLK
Sbjct: 477 PVNSVNDIVNLATEKRDPKLKAMVRTFLRPVRIEAGRLDVSLAPGAPTTLLNELAVKLKE 536
Query: 120 WTGEDWEIRFSL-----------GRCCEYFEIDS----DIKAVRTIFPTAQVVCIR 160
WTG W + S R E ID+ D+ A+ FP A+++ +R
Sbjct: 537 WTGIHWIVSLSRDEGQPTLVEAEARTREQHVIDARQDPDVAAILAHFPGAKIIDVR 592
>gi|330813511|ref|YP_004357750.1| DNA polymerase III subunits gamma and tau [Candidatus Pelagibacter
sp. IMCC9063]
gi|327486606|gb|AEA81011.1| DNA polymerase III subunits gamma and tau [Candidatus Pelagibacter
sp. IMCC9063]
Length = 531
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 52/83 (62%)
Query: 48 KQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPE 107
K D +N S+ + ++L++L K+ + ++ L+R + +V F+ G++++SF + + +
Sbjct: 399 KPDTVNLASSTQEIHSFQELVDLTNKHKEIELKFDLERNVRLVKFDQGKIDISFNESLSK 458
Query: 108 DFIENLATKLKNWTGEDWEIRFS 130
DFI+NL+ KL WTG+ W I S
Sbjct: 459 DFIKNLSLKLNEWTGKRWMITLS 481
>gi|327190225|gb|EGE57328.1| DNA polymerase III, tau subunit protein (DNA-directed DNA
polymerase) [Rhizobium etli CNPAF512]
Length = 178
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 17/119 (14%)
Query: 58 CTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKL 117
P N +++L + D K+ +++ F+ V E GRL+V+ + P + LA KL
Sbjct: 27 LVPVNTIGDIVDLAAEKRDVKLKALVRNFVRPVRIEPGRLDVNLTEGAPGTLLNELAVKL 86
Query: 118 KNWTGEDW----------------EIRFSLGRCCEYFEIDSDIKAVRTIFPTAQVVCIR 160
K WTG W E + R + + D D+ A+ FP A+++ +R
Sbjct: 87 KEWTGIHWIVSTSREEGGPTMVEAEAKAQQQRVSDARQ-DPDVAAILAQFPGAKIIDVR 144
>gi|86355786|ref|YP_467678.1| DNA polymerase III subunits gamma and tau [Rhizobium etli CFN 42]
gi|86279888|gb|ABC88951.1| DNA polymerase III, tau subunit protein [Rhizobium etli CFN 42]
Length = 624
Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 62 NYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWT 121
N ++ L + D K+ M++ F+ V E GRL+VS + P + LA KLK WT
Sbjct: 478 NSVGDIVNLATEKRDAKLKAMVRNFVRPVRIEPGRLDVSLTEGAPTTLLNELAVKLKEWT 537
Query: 122 GEDWEIRFSL-----------GRCCEYFEIDS----DIKAVRTIFPTAQVVCIR 160
G W + S R E ID+ D+ A+ FP A+++ +R
Sbjct: 538 GIHWIVSLSRDEGQPTLVEAEARTREQHVIDARQDPDVAAILAHFPGAKIIDVR 591
>gi|209551648|ref|YP_002283565.1| DNA polymerase III subunits gamma and tau [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|209537404|gb|ACI57339.1| DNA polymerase III, subunits gamma and tau [Rhizobium leguminosarum
bv. trifolii WSM2304]
Length = 626
Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKN 119
P N ++EL + D K+ +++ F+ V E GRL+V+ + P + LA KLK
Sbjct: 477 PVNSVSDIVELAAEKRDVKLKALVRNFVRPVRIEPGRLDVNLTEGAPGTLLNELAVKLKE 536
Query: 120 WTGEDW----------------EIRFSLGRCCEYFEIDSDIKAVRTIFPTAQVVCIR 160
WTG W E + R + + D D+ A+ FP A+++ +R
Sbjct: 537 WTGIHWIVSTSREEGGPTMVEAEAKAQQQRVSDARQ-DPDVAAILAQFPGAKIIDVR 592
>gi|254456249|ref|ZP_05069678.1| DNA-directed DNA polymerase gamma/tau subunit [Candidatus
Pelagibacter sp. HTCC7211]
gi|207083251|gb|EDZ60677.1| DNA-directed DNA polymerase gamma/tau subunit [Candidatus
Pelagibacter sp. HTCC7211]
Length = 556
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 48 KQDVLNRLSACTPD--NYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEI 105
K DV + A + N + L+++C + + K+ L++ +++V FE R+E+SF +
Sbjct: 417 KPDVKQEVEAIDKNLINSFEDLLDICTQKKEIKLKYELEKNVNLVKFERNRIEISFNDNL 476
Query: 106 PEDFIENLATKLKNWTGEDWEIRFSLGR 133
+DF+++L++KL WT E W I FS +
Sbjct: 477 DKDFVKDLSSKLFEWTSERWIITFSKSK 504
>gi|222084336|ref|YP_002542865.1| DNA polymerase III [Agrobacterium radiobacter K84]
gi|221721784|gb|ACM24940.1| DNA polymerase III [Agrobacterium radiobacter K84]
Length = 625
Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 17/115 (14%)
Query: 62 NYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWT 121
N + EL + D K+ M++ F+ V E GRL+VS P + LA KLK WT
Sbjct: 479 NSMTDIAELAGQKRDPKLKAMVRSFVRPVRLEPGRLDVSLTPGAPGTLLNELAVKLKEWT 538
Query: 122 GEDWEIRFSLG----------------RCCEYFEIDSDIKAVRTIFPTAQVVCIR 160
G W + S R + + D D+ A+ + FP A+++ +R
Sbjct: 539 GIHWIVSLSRDEGEPTVVEAEANAQRQRVADARQ-DPDVAAILSQFPGAKIIDVR 592
>gi|91762357|ref|ZP_01264322.1| DNA-directed DNA polymerase gamma/tau subunit [Candidatus
Pelagibacter ubique HTCC1002]
gi|91718159|gb|EAS84809.1| DNA-directed DNA polymerase gamma/tau subunit [Candidatus
Pelagibacter ubique HTCC1002]
Length = 557
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 43/64 (67%)
Query: 67 LIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWE 126
L++ C + K+ L++ +++VSFE R+E+SF +++ +DFI++L+TKL WT E W
Sbjct: 444 LLKACSSKKEIKLKYELEKNVNLVSFENKRIEISFNEDLDKDFIKDLSTKLFEWTNERWI 503
Query: 127 IRFS 130
I S
Sbjct: 504 ISLS 507
>gi|71083213|ref|YP_265932.1| DNA-directed DNA polymerase subunit gamma/tau [Candidatus
Pelagibacter ubique HTCC1062]
gi|71062326|gb|AAZ21329.1| DNA-directed DNA polymerase gamma/tau subunit [Candidatus
Pelagibacter ubique HTCC1062]
Length = 557
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 43/64 (67%)
Query: 67 LIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWE 126
L++ C + K+ L++ +++VSFE R+E+SF +++ +DFI++L+TKL WT E W
Sbjct: 444 LLKACSSKKEIKLKYELEKNVNLVSFENKRIEISFNEDLDKDFIKDLSTKLFEWTNERWI 503
Query: 127 IRFS 130
I S
Sbjct: 504 ISLS 507
>gi|190889795|ref|YP_001976337.1| DNA polymerase III, tau subunit protein (DNA-directed DNA
polymerase) [Rhizobium etli CIAT 652]
gi|190695074|gb|ACE89159.1| DNA polymerase III, tau subunit protein (DNA-directed DNA
polymerase) [Rhizobium etli CIAT 652]
Length = 623
Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKN 119
P N +++L + D K+ +++ F+ V E GRL+V+ + P + LA KLK
Sbjct: 474 PVNTIGDIVDLAAEKRDVKLKALVRNFVRPVRIEPGRLDVNLTEGAPGTLLNELAVKLKE 533
Query: 120 WTGEDW----------------EIRFSLGRCCEYFEIDSDIKAVRTIFPTAQVVCIR 160
WTG W E + R + + D D+ A+ FP A+++ +R
Sbjct: 534 WTGIHWIVSTSREEGGPTMVEAEAKAQQQRVSDARQ-DPDVAAILAQFPGAKIIDVR 589
>gi|319405116|emb|CBI78722.1| DNA polymerase III subunit tau [Bartonella sp. AR 15-3]
Length = 633
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 25/154 (16%)
Query: 23 IGENALPRNISS-DECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVE 81
+ N L NI++ P +E TE++ ++N L K +++L E++++
Sbjct: 465 VQTNQLDSNITNLSHVIPQSEMEATEQKIIINSL---------KDIVDLAEQHNEIHFKL 515
Query: 82 MLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRF------------ 129
+++ F+H VSFE + + F +E P ++ L WTG+ W I
Sbjct: 516 LIKEFVHPVSFEPQHITLRFAEEAPHSLERDIKKMLYQWTGKHWTITLVNEGGEPTLQEE 575
Query: 130 SLGRCCEYF---EIDSDIKAVRTIFPTAQVVCIR 160
S+ F + D +I + FP A+++ IR
Sbjct: 576 SIAIQKSLFSDAQTDPNIAKILNNFPGAKIIDIR 609
>gi|13474589|ref|NP_106158.1| DNA polymerase III subunits gamma and tau [Mesorhizobium loti
MAFF303099]
gi|14025343|dbj|BAB51944.1| DNA polymerase III tau [Mesorhizobium loti MAFF303099]
Length = 604
Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 16/113 (14%)
Query: 67 LIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWE 126
++ L + D +++R + V FE GR++VS + P+ + +L TKL+ WTG +W
Sbjct: 471 IVALADAQRDIAFKVLVKRCIRPVRFEPGRIDVSLTDDAPKLLLNDLTTKLRAWTGRNWL 530
Query: 127 IRF-------------SLGRCCEYFEIDSD--IKAVRTIFPTAQVVCIRTIPN 164
+ S R + + SD + A+ FP A+++ +R IP+
Sbjct: 531 VSLSKEEGGQTLAEMESTKRENAFLDAKSDPTVAAILARFPGAKIIDVR-IPD 582
>gi|126733475|ref|ZP_01749222.1| DNA polymerase III, subunits gamma and tau [Roseobacter sp. CCS2]
gi|126716341|gb|EBA13205.1| DNA polymerase III, subunits gamma and tau [Roseobacter sp. CCS2]
Length = 612
Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 14/111 (12%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ ++EL + D K++ ++ L +VS++ GR+EV+ + D + L +L+ WTG
Sbjct: 476 EDVVELIRTHRDVKLLVEVETGLRLVSYQPGRIEVNPTPDAARDLVGRLGARLQAWTGNR 535
Query: 125 WEIRFSLGRCCEYFEIDSD--------------IKAVRTIFPTAQVVCIRT 161
W I + G E +KAV IFP A++ IRT
Sbjct: 536 WAISVAEGGGPTIAETRDAAENALLQEAQDHPLVKAVIAIFPKAKITEIRT 586
>gi|15887450|ref|NP_353131.1| DNA polymerase III subunits gamma and tau [Agrobacterium
tumefaciens str. C58]
gi|15154965|gb|AAK85916.1| DNA polymerase III, tau subunit [Agrobacterium tumefaciens str.
C58]
Length = 624
Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 17/117 (14%)
Query: 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKN 119
P N + + +LC+KN D M ++ F+ +V E GRL++ + P L KLK
Sbjct: 476 PVNSLQDIADLCQKNRDPVMRAKVRNFVRLVRLEPGRLDMRLGEGAPGSLPGELGVKLKE 535
Query: 120 WTGEDWEIRFSL----------------GRCCEYFEIDSDIKAVRTIFPTAQVVCIR 160
WTG W + S R + + D D+ A+ FP A++ +R
Sbjct: 536 WTGIHWIVSLSKEQGEPTLVEAEGNARDARLVDARQ-DPDVAAILAQFPGAKITDVR 591
>gi|209886655|ref|YP_002290512.1| DNA polymerase III, subunits gamma and tau [Oligotropha
carboxidovorans OM5]
gi|209874851|gb|ACI94647.1| DNA polymerase III, subunits gamma and tau [Oligotropha
carboxidovorans OM5]
Length = 632
Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 67 LIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWE 126
++EL + D ++ L+ L +V E G+LE++ + + L KL+ WTG W
Sbjct: 498 IVELAREKRDVQLKTALEADLRLVRMEDGKLEIALERSAARSVVNELQRKLEQWTGRRWA 557
Query: 127 I---------------RFSLGRCCEYFEIDSDIKAVRTIFPTAQVVCIRTI 162
+ R + E + D ++AV T+FP +VV +R +
Sbjct: 558 VIVSNEEGEPTLRAQARERKDKLTEDVQADPRVQAVMTLFPGTEVVDVRRL 608
>gi|114770074|ref|ZP_01447612.1| DNA polymerase III subunits gamma and tau [alpha proteobacterium
HTCC2255]
gi|114548911|gb|EAU51794.1| DNA polymerase III subunits gamma and tau [alpha proteobacterium
HTCC2255]
Length = 594
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 66 QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDW 125
Q++EL + D K++ ++ ++ VV + GRLE KE P+D + L+ KL++WT W
Sbjct: 457 QVLELIRSHRDMKLLYDVETYVRVVKYLPGRLEFEPTKEAPKDLAQRLSQKLQDWTKSRW 516
Query: 126 EI 127
I
Sbjct: 517 AI 518
>gi|262277951|ref|ZP_06055744.1| DNA polymerase III subunit gamma/tau [alpha proteobacterium
HIMB114]
gi|262225054|gb|EEY75513.1| DNA polymerase III subunit gamma/tau [alpha proteobacterium
HIMB114]
Length = 553
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 48/79 (60%)
Query: 52 LNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIE 111
LN+ + + N ++LI L EK + ++ L+R + +V F G++++ F +++ ++FI+
Sbjct: 421 LNQNNLTSKINSFEELISLVEKKKEIELKFDLERNIRLVKFSEGKIDIEFNEKLSKNFIK 480
Query: 112 NLATKLKNWTGEDWEIRFS 130
NL ++L WTG W I S
Sbjct: 481 NLTSRLLEWTGNRWIITLS 499
>gi|240849897|ref|YP_002971286.1| DNA polymerase III subunits gamma and tau [Bartonella grahamii
as4aup]
gi|240267020|gb|ACS50608.1| DNA polymerase III subunits gamma and tau [Bartonella grahamii
as4aup]
Length = 646
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 62 NYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWT 121
N +++L E+++D +++ F+H VSFE G + + + P+ ++ K+ WT
Sbjct: 503 NSLHDIVQLAEQHNDAPFKLLIKEFVHPVSFEAGHITLRLSENTPQFLAHDIEKKISQWT 562
Query: 122 GEDWEIRF------------SLGRCCEYF---EIDSDIKAVRTIFPTAQVVCIR 160
+ W I F S+ F E D DI + FP A++V IR
Sbjct: 563 EKRWTITFVNEGGGPTLQEESIAIQKTLFSNAETDPDIAKILNHFPEAKIVDIR 616
>gi|325291540|ref|YP_004277404.1| DNA polymerase III subunits gamma and tau [Agrobacterium sp. H13-3]
gi|325059393|gb|ADY63084.1| DNA polymerase III subunits gamma and tau [Agrobacterium sp. H13-3]
Length = 625
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 17/117 (14%)
Query: 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKN 119
P N + + +LC+KN D M ++ F+ +V E GRL++ P L KLK
Sbjct: 476 PVNSLQDIADLCQKNRDPVMRAKVRNFVRLVRLEPGRLDMRLGDGAPGSLPGELGVKLKE 535
Query: 120 WTGEDWEIRFSL----------------GRCCEYFEIDSDIKAVRTIFPTAQVVCIR 160
WTG W + S R + + D D+ A+ FP A++ +R
Sbjct: 536 WTGIHWIVSLSKEQGQPTLVEAEGSARDARLVDARQ-DPDVAAILQQFPGAKITDVR 591
>gi|299132608|ref|ZP_07025803.1| DNA polymerase III, subunits gamma and tau [Afipia sp. 1NLS2]
gi|298592745|gb|EFI52945.1| DNA polymerase III, subunits gamma and tau [Afipia sp. 1NLS2]
Length = 616
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 15/112 (13%)
Query: 66 QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDW 125
+++ L + D + L+ L +V E GRLE++ + + +L KL+ WTG W
Sbjct: 483 EIVALASEKRDIALKAALEADLRLVRMEDGRLEIALERSAARSVVNDLQRKLEQWTGRRW 542
Query: 126 EIRFS---------------LGRCCEYFEIDSDIKAVRTIFPTAQVVCIRTI 162
+ S + E + D ++AV FP AQVV +R +
Sbjct: 543 AVVVSNEEGQPTLRAQAQERKDKLTENVQADPRVQAVMAAFPGAQVVDVRRL 594
>gi|296775809|gb|ADH43064.1| DNA polymerase III, gamma/tau subunits [uncultured SAR11 cluster
alpha proteobacterium H17925_48B19]
Length = 514
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 48 KQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPE 107
K +V+N L + + LI LC + + K+ L+ ++VSF G +E+SF + + +
Sbjct: 416 KDEVINELKIGSFE----SLINLCTERKEAKLKYELETNTNLVSFSEGLIEISFNENLDK 471
Query: 108 DFIENLATKLKNWTGEDWEIRFS 130
DFI+NL+ KL WT + W I S
Sbjct: 472 DFIKNLSNKLYEWTSKRWIISLS 494
>gi|254487014|ref|ZP_05100219.1| DNA polymerase III, tau subunit [Roseobacter sp. GAI101]
gi|214043883|gb|EEB84521.1| DNA polymerase III, tau subunit [Roseobacter sp. GAI101]
Length = 578
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 15/112 (13%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ ++EL N D K++ ++ L + +++ GR+E + P D + L T+L+ WTG
Sbjct: 441 EHVVELIRTNRDVKLLVEVENTLRLAAYQPGRIEFTPTDAAPRDLAQRLGTRLQLWTGNR 500
Query: 125 W--------------EIRFSLGRCCEY-FEIDSDIKAVRTIFPTAQVVCIRT 161
W EIR + + E ++AV FP A+++ IRT
Sbjct: 501 WAVSIVGDSDAKTIAEIRDAKDNALKSAAESHPLMQAVMATFPGAKILSIRT 552
>gi|56698372|ref|YP_168745.1| DNA polymerase III subunits gamma and tau [Ruegeria pomeroyi DSS-3]
gi|56680109|gb|AAV96775.1| DNA polymerase III, gamma and tau subunits [Ruegeria pomeroyi
DSS-3]
Length = 583
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ L+EL N D K++ ++ L +VS++ GR+E + P D + L + L+ WTG
Sbjct: 446 EHLVELIRANRDGKLLADIEMDLRLVSYQPGRIEFQPTERAPTDLAQRLGSALQRWTGNR 505
Query: 125 WEIRFSLG---------RCCEYFEIDSD------IKAVRTIFPTAQVVCIRT 161
W + R E + ++ ++AV FP A++ I T
Sbjct: 506 WAVSVVAQGGGKTIDEIRNAEKYALEEKAREHPLVQAVLAQFPKARITHIET 557
>gi|119386357|ref|YP_917412.1| DNA polymerase III subunits gamma and tau [Paracoccus denitrificans
PD1222]
gi|119376952|gb|ABL71716.1| DNA polymerase III, subunits gamma and tau [Paracoccus
denitrificans PD1222]
Length = 592
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 28/172 (16%)
Query: 19 SSFAIGE---NALPRNISSDECFPLAEAGITE---KQDVLNRLSACTPDNYT-----KQL 67
+S A GE NA P + + E P A A T +QD A +PD + +
Sbjct: 386 ASAAAGEFSRNAAP-SAARGEAPPRAAAPRTPVAVRQDGSAAALAVSPDALAGFPDFESV 444
Query: 68 IELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWT-GEDWE 126
IEL + D K++ ++ L +V + GR+E + P DF + LA +L+ WT G+ W
Sbjct: 445 IELIRRMRDMKLLLDVEDHLRLVRYSPGRIEFQPTDKAPRDFAQRLAERLRGWTGGQRWA 504
Query: 127 IRFS--LGRCCEYFEI-------------DSDIKAVRTIFPTAQVVCIRTIP 163
+ + GR + + ++A+ FP A++ IR IP
Sbjct: 505 VTVTSEAGRPTISEQRAAREAEARARAMQNPTVQAIFAAFPGAKITQIRPIP 556
>gi|260427427|ref|ZP_05781406.1| DNA polymerase III subunit tau [Citreicella sp. SE45]
gi|260421919|gb|EEX15170.1| DNA polymerase III subunit tau [Citreicella sp. SE45]
Length = 588
Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 19/114 (16%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ +IEL N D ++ ++R + + +++ GR+E + P D + L + L+ WTG
Sbjct: 451 EHVIELIRANRDGLLLAQVERHVRLAAYQPGRIEFTPTDNAPADLAQKLGSALQRWTGNR 510
Query: 125 WEIRFSLGRCCE---YFE--------------IDSDIKAVRTIFPTAQVVCIRT 161
W + G CE +E + ++A FP+A++V IRT
Sbjct: 511 WGVSVVNG--CETPTVYEKNHAAELAMKAEATVHPLVQAAIAAFPSAEIVEIRT 562
>gi|222147106|ref|YP_002548063.1| DNA polymerase III subunits gamma and tau [Agrobacterium vitis S4]
gi|221734096|gb|ACM35059.1| DNA polymerase III subunits gamma and tau [Agrobacterium vitis S4]
Length = 631
Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 19/114 (16%)
Query: 67 LIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWE 126
++ LC N D K+ + + ++ +V E GRLE++ E P+ + +L +L+ WT W
Sbjct: 490 IVHLCTANRDPKLKALTRAYVRLVKLENGRLEINLPPEAPKSLVGDLQKRLEEWTDIRWM 549
Query: 127 IRFSL----------------GRCCEYFEIDSDIKAVRTIFPTAQV--VCIRTI 162
+ S R + D D+ A+ + FP A++ V IRT+
Sbjct: 550 VILSREPGEKTLAEQEKSDHEARMTDA-AADPDVMAILSRFPGAKITDVRIRTV 602
>gi|254464305|ref|ZP_05077716.1| DNA polymerase III, tau subunit [Rhodobacterales bacterium Y4I]
gi|206685213|gb|EDZ45695.1| DNA polymerase III, tau subunit [Rhodobacterales bacterium Y4I]
Length = 601
Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 15/112 (13%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ ++EL N D K++ ++ + +VS++ GR+E + + P D L + L+NWTG
Sbjct: 464 EHVVELIRTNRDVKLLVEVETGVRLVSYQPGRIEFTPSAQAPRDLAARLGSALQNWTGAR 523
Query: 125 W--------------EIRFSLGRCC-EYFEIDSDIKAVRTIFPTAQVVCIRT 161
W E+R + E ++AV FP A++ IRT
Sbjct: 524 WVVSIAPDGDAPTIAEVRDAAENALREKAAAHPLVQAVLESFPKAKITRIRT 575
>gi|114704405|ref|ZP_01437313.1| DNA polymerase III subunits gamma and tau [Fulvimarina pelagi
HTCC2506]
gi|114539190|gb|EAU42310.1| DNA polymerase III subunits gamma and tau [Fulvimarina pelagi
HTCC2506]
Length = 668
Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 15/109 (13%)
Query: 67 LIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWE 126
L EL + N D ++ ++R++ + S RLE+ E PE L KL +WTG W
Sbjct: 501 LAELAKHNRDSRLEAWIRRYVRLKSIGPRRLEIGVTDEAPERLAGELTRKLHDWTGARWS 560
Query: 127 IRFSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVVCIR 160
+ + G + E D + AV FP A++ +R
Sbjct: 561 VTVTSGVTGQTLEETKKEKRLALLRDAEQDPAVAAVLKAFPGARIADVR 609
>gi|297183472|gb|ADI19603.1| DNA polymerase III, gamma/tau subunits [uncultured SAR11 cluster
bacterium HF0770_37D02]
Length = 563
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 11/88 (12%)
Query: 54 RLSACTPDNYTKQL-----------IELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFL 102
+L++ P N T+ L I+L K + ++ L+R + ++ F G+++++F
Sbjct: 428 KLTSLKPKNLTENLNLETIPSFEDLIKLTSKKREVELKYDLERNVKLIKFSEGKIDINFD 487
Query: 103 KEIPEDFIENLATKLKNWTGEDWEIRFS 130
+ I ++F+ NLA KL WTG+ W I +
Sbjct: 488 ENIGKNFVRNLAEKLLKWTGKRWIITLT 515
>gi|260462019|ref|ZP_05810264.1| DNA polymerase III, subunits gamma and tau [Mesorhizobium
opportunistum WSM2075]
gi|259032266|gb|EEW33532.1| DNA polymerase III, subunits gamma and tau [Mesorhizobium
opportunistum WSM2075]
Length = 597
Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 16/113 (14%)
Query: 67 LIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWE 126
++ L + D +++R + +V E GR++VS + P+ + +L KL+ WTG +W
Sbjct: 464 IVALADAQRDIAFKVLVKRCIRLVRIEPGRIDVSLTDDAPKMLLNDLTMKLRAWTGRNWL 523
Query: 127 IRF-------------SLGRCCEYFEIDSD--IKAVRTIFPTAQVVCIRTIPN 164
+ S R + + SD + A+ FP A+++ +R IP+
Sbjct: 524 VSLSKEEGGQTLAEMESTRRENAFLDAKSDPAVAAILARFPGAKIIDVR-IPD 575
>gi|197103834|ref|YP_002129211.1| DNA polymerase III subunits gamma and tau [Phenylobacterium
zucineum HLK1]
gi|196477254|gb|ACG76782.1| DNA polymerase III subunits gamma and tau [Phenylobacterium
zucineum HLK1]
Length = 605
Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 15/111 (13%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ ++ L EK D + ++RF+ +S G +E P D + L +L+ WTGE
Sbjct: 472 EDILALIEKKRDITLKLDIERFVRPISVRPGAIEYEPAPGAPRDLAQRLVARLREWTGER 531
Query: 125 WEIRFSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVVCIR 160
W I G E E D +++V FP A++V IR
Sbjct: 532 WLISAQGGGGAESLWEKQKREQREVRAAIEQDPFVQSVMQAFPGAEIVGIR 582
>gi|89069708|ref|ZP_01157044.1| DNA polymerase III subunits gamma and tau [Oceanicola granulosus
HTCC2516]
gi|89044654|gb|EAR50765.1| DNA polymerase III subunits gamma and tau [Oceanicola granulosus
HTCC2516]
Length = 583
Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 66 QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDW 125
++EL + D K++ ++ L +VS+ GR+E+ + P D L ++L+ WTG W
Sbjct: 447 HVVELIRHHRDVKLLVEVETNLRLVSYSPGRIEMEPTETAPPDLAAKLGSRLQAWTGVRW 506
Query: 126 EIRFSLGRCCEYFEIDSD---------------IKAVRTIFPTAQVVCIRT 161
+ S G + D ++AV FP A++ +RT
Sbjct: 507 AVSVSSGGGGPTIAEERDAAELALKAEAAAHPLVQAVLQAFPKARITEVRT 557
>gi|83855097|ref|ZP_00948627.1| DNA polymerase III subunits gamma and tau [Sulfitobacter sp.
NAS-14.1]
gi|83842940|gb|EAP82107.1| DNA polymerase III subunits gamma and tau [Sulfitobacter sp.
NAS-14.1]
Length = 582
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 15/112 (13%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ ++EL N D K++ ++ + + +++ GR+E + P D + L T+L+ WTG
Sbjct: 445 EHVVELIRSNRDVKLLVEVETSVRLAAYQPGRIEFTPTDSAPRDLAQRLGTRLQLWTGNR 504
Query: 125 WEIRF----SLGRCCEYFEIDSD-----------IKAVRTIFPTAQVVCIRT 161
W + S E + + ++AV FP A+++ IRT
Sbjct: 505 WAVTIVGDSSAKTIAEVRDAKENALKSQAENHPLMQAVMASFPGAKILSIRT 556
>gi|83941620|ref|ZP_00954082.1| DNA polymerase III, gamma and tau subunits [Sulfitobacter sp.
EE-36]
gi|83847440|gb|EAP85315.1| DNA polymerase III, gamma and tau subunits [Sulfitobacter sp.
EE-36]
Length = 582
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 15/112 (13%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ ++EL N D K++ ++ + + +++ GR+E + P D + L T+L+ WTG
Sbjct: 445 EHVVELIRSNRDVKLLVEVETSVRLAAYQPGRIEFTPTDSAPRDLAQRLGTRLQLWTGNR 504
Query: 125 WEIRF----SLGRCCEYFEIDSD-----------IKAVRTIFPTAQVVCIRT 161
W + S E + + ++AV FP A+++ IRT
Sbjct: 505 WAVTIVGDSSAKTIAEIRDAKENALKSQAENHPLMQAVMASFPGAKILSIRT 556
>gi|121602189|ref|YP_989487.1| DNA polymerase III subunits gamma and tau [Bartonella bacilliformis
KC583]
gi|120614366|gb|ABM44967.1| DNA polymerase III, subunits gamma and tau [Bartonella
bacilliformis KC583]
Length = 634
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Query: 62 NYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWT 121
N +++L +++ D ++ F+H VSFE G + + ++ P +L L WT
Sbjct: 496 NSLHDIVKLADQHRDIHFKLLITEFIHPVSFEPGHIVLRLAEDAPHSLARDLKKMLHQWT 555
Query: 122 GEDWEIRF-------------SLGRCCEYFEIDS--DIKAVRTIFPTAQVVCIR 160
G+ W I S + + ++ + DI + FP A++V IR
Sbjct: 556 GQHWAITLVNKGGKPTLQEENSAAQKALFSDVQTNPDIVKILNHFPGAKIVDIR 609
>gi|260432378|ref|ZP_05786349.1| DNA polymerase III subunits gamma and tau [Silicibacter
lacuscaerulensis ITI-1157]
gi|260416206|gb|EEX09465.1| DNA polymerase III subunits gamma and tau [Silicibacter
lacuscaerulensis ITI-1157]
Length = 584
Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 15/112 (13%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ ++EL N D K++ ++ + +VS++ GR+E + ++ P D L + L+ WTG
Sbjct: 447 EHVVELIRANRDVKLLVEVENGVRLVSYQPGRIEFTPTEKAPTDLAARLGSALQRWTGNR 506
Query: 125 WEIRF-SLGRCCEYFEIDSD--------------IKAVRTIFPTAQVVCIRT 161
W + S G E+ ++AV T FP A++ I T
Sbjct: 507 WAVSIVSDGDAPTIAELRDAAELALKAKAEEHPLVQAVLTQFPKARITRIET 558
>gi|99080007|ref|YP_612161.1| DNA polymerase III subunits gamma and tau [Ruegeria sp. TM1040]
gi|99036287|gb|ABF62899.1| DNA polymerase III subunits gamma and tau [Ruegeria sp. TM1040]
Length = 608
Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 37/66 (56%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ +IEL + D K++ ++ + +VS++ GR+E + P+D + T L+NWTG
Sbjct: 472 EHVIELIRHHRDVKLLVEVETGVRLVSYQPGRIEFTPAANAPQDLAARIGTALQNWTGSR 531
Query: 125 WEIRFS 130
W + +
Sbjct: 532 WVVSIA 537
>gi|84685226|ref|ZP_01013125.1| DNA polymerase III subunits gamma and tau [Maritimibacter
alkaliphilus HTCC2654]
gi|84666958|gb|EAQ13429.1| DNA polymerase III subunits gamma and tau [Rhodobacterales
bacterium HTCC2654]
Length = 576
Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 15/112 (13%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ ++ L N D K++ ++ + + +++ GR+E + + P D LA +L+ WTG
Sbjct: 439 ESVVRLIRANRDVKLLVEVETCIRLAAYQPGRIEFTPTPDAPRDLAARLAQRLQGWTGAR 498
Query: 125 WEIRF---------SLGRCCEYFEIDSD------IKAVRTIFPTAQVVCIRT 161
W + + R E EI + ++AV FP A++ IRT
Sbjct: 499 WGVSLVNDAEVPTIAETRDAEENEIKAKATEHPLVQAVLAAFPKARITEIRT 550
>gi|86140173|ref|ZP_01058735.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. MED193]
gi|85823110|gb|EAQ43323.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. MED193]
Length = 608
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 15/112 (13%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ ++EL + D ++E ++ +L +VS++ GR+ + ++ P+D L +L+NWT
Sbjct: 471 EHVVELIRQRRDGLLLEYVKTYLRLVSYQPGRITIQPTQDAPKDLAARLGQQLQNWTHAR 530
Query: 125 WEIRFSL---GRCCEYFEIDSD------------IKAVRTIFPTAQVVCIRT 161
W I G E ++ ++AV FP A++ IRT
Sbjct: 531 WIISLENEGGGDTITELENAAENALRAKASEHPLVQAVMENFPKAKITRIRT 582
>gi|148258531|ref|YP_001243116.1| DNA polymerase III subunits gamma and tau [Bradyrhizobium sp.
BTAi1]
gi|146410704|gb|ABQ39210.1| Putative DNA polymerase III (gamma and tau subunits)
[Bradyrhizobium sp. BTAi1]
Length = 613
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
++L+ L KN D L+ + +V FE GRLE++ + + +L KL++WTG
Sbjct: 477 QELVALAGKNRDLITKSALEMDVRLVRFEDGRLEIALERTAQRSLVSDLGRKLEDWTGRR 536
Query: 125 WEIRFS 130
W + S
Sbjct: 537 WTVIVS 542
>gi|146337878|ref|YP_001202926.1| DNA polymerase III subunits gamma and tau [Bradyrhizobium sp.
ORS278]
gi|146190684|emb|CAL74688.1| Putative DNA polymerase III (gamma and tau subunits)
[Bradyrhizobium sp. ORS278]
Length = 615
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
++L+ L KN D L+ + +V FE GRLE++ + + +L KL++WTG
Sbjct: 477 QELVALAAKNRDLITKSALEMDVRLVRFEDGRLEIALERTAQRALVSDLGRKLEDWTGRR 536
Query: 125 WEIRFS 130
W + S
Sbjct: 537 WTVIVS 542
>gi|260574231|ref|ZP_05842236.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sp. SW2]
gi|259023697|gb|EEW26988.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sp. SW2]
Length = 577
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+Q+++L D K++ ++ L + + GR+E + P D LA +L+ WTG
Sbjct: 440 EQVVDLIRDKRDMKLLVEVETCLRLARYSPGRIEFEPTDDAPRDLAARLAQRLQGWTGAR 499
Query: 125 WEIRFSLG---------RCCEYFEIDSD------IKAVRTIFPTAQVVCIRT 161
W + G R ++ ++ ++AV FP A++ IR+
Sbjct: 500 WGVSIVSGGGAATLAEDRGKDWLAAKAEAMQNPLVQAVLAAFPNAEITAIRS 551
>gi|319779807|ref|YP_004139283.1| DNA polymerase III, subunits gamma and tau [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317165695|gb|ADV09233.1| DNA polymerase III, subunits gamma and tau [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 605
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 18/144 (12%)
Query: 36 ECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELG 95
E P A + + V SA P +I L + D +++ + V E G
Sbjct: 443 EASPAPVAYVAPPEPVTEAQSA--PLKSLADIIALADAQRDIAFKVLVKSCIRFVRIEPG 500
Query: 96 RLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRF-------------SLGRCCEYFEIDS 142
R++V + P+ + +L TKL+ WTG W + S R + + S
Sbjct: 501 RIDVGLTSDAPKMLLNDLTTKLRAWTGRSWLVSLSKEEGGQTLAEMESAKRETAFLDAKS 560
Query: 143 D--IKAVRTIFPTAQVVCIRTIPN 164
D + A+ FP A+++ +R IP+
Sbjct: 561 DPTVAAILARFPGAKIIDVR-IPD 583
>gi|163744802|ref|ZP_02152162.1| DNA polymerase III subunits gamma and tau [Oceanibulbus indolifex
HEL-45]
gi|161381620|gb|EDQ06029.1| DNA polymerase III subunits gamma and tau [Oceanibulbus indolifex
HEL-45]
Length = 583
Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 15/112 (13%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ +IEL N D K++ ++ + + +++ GR+E + P D + L KL+ WTG
Sbjct: 446 EHVIELIRVNRDVKLLVEVETCVQLAAYQPGRIEFVPTDDAPRDLAQRLGQKLQLWTGNR 505
Query: 125 WEIRF-------SLGRCCEYFEIDSD--------IKAVRTIFPTAQVVCIRT 161
W + ++ + + +E+ ++AV FP A++ IRT
Sbjct: 506 WAVSLVNEGGAETIAQIRDAWELALKKQAQEHPMMQAVLAQFPKARITAIRT 557
>gi|319408027|emb|CBI81681.1| DNA polymerase III gamma and tau subunit [Bartonella
schoenbuchensis R1]
Length = 642
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 15/114 (13%)
Query: 62 NYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWT 121
N ++ L E++ + +++ F+H VSFE G + + + P ++ L WT
Sbjct: 503 NSLHDIVNLAEQHRETHFKLLIKEFVHPVSFEPGHITLRLAENAPRSLARDIKKMLHQWT 562
Query: 122 GEDWEIRF------------SLGRCCEYF---EIDSDIKAVRTIFPTAQVVCIR 160
+ W I F S F E D DI + FP A++V IR
Sbjct: 563 EKKWTITFVTEGGGPTLQEESAAAQRALFSDVETDPDIATILNHFPGAKIVDIR 616
>gi|259415625|ref|ZP_05739546.1| DNA polymerase III subunits gamma and tau [Silicibacter sp.
TrichCH4B]
gi|259348855|gb|EEW60617.1| DNA polymerase III subunits gamma and tau [Silicibacter sp.
TrichCH4B]
Length = 625
Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 37/66 (56%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ +IEL K+ D K++ ++ + +VS++ GR+ + P+D + T L+NWTG
Sbjct: 489 EHVIELIRKHRDVKLLVEVEGGVRLVSYQPGRITFTPAANAPQDLAARIGTALQNWTGSR 548
Query: 125 WEIRFS 130
W + +
Sbjct: 549 WVVSIA 554
>gi|153007366|ref|YP_001368581.1| DNA polymerase III subunits gamma and tau [Ochrobactrum anthropi
ATCC 49188]
gi|151559254|gb|ABS12752.1| DNA polymerase III, subunits gamma and tau [Ochrobactrum anthropi
ATCC 49188]
Length = 605
Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 36/162 (22%), Positives = 64/162 (39%), Gaps = 15/162 (9%)
Query: 14 DALNVSSFAIGENALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEK 73
DA+ SS A + E + +Q V N P N ++ L +K
Sbjct: 416 DAVGSSSMAPASGGPATAMRIVETPQPVQPSAAPQQFVENTPQPSVPVNSLHDVVALADK 475
Query: 74 NHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEI---RFS 130
+ D + +++ + + S GRLE+ + P+ +++ +L NWTG W + R
Sbjct: 476 HRDMQFKILVKGCVRLASIAPGRLEIGLTDDAPKSLPSDISQRLLNWTGIRWVVTVARDV 535
Query: 131 LGRCCEYFEI------------DSDIKAVRTIFPTAQVVCIR 160
G+ E D D+ A+ FP A++ +R
Sbjct: 536 AGQTISEAETERRDNLVTDARADPDVAAILAAFPGAKITDVR 577
>gi|307942775|ref|ZP_07658120.1| DNA polymerase III subunit tau [Roseibium sp. TrichSKD4]
gi|307773571|gb|EFO32787.1| DNA polymerase III subunit tau [Roseibium sp. TrichSKD4]
Length = 610
Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 70 LCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRF 129
L +N D M ++R + +V FE+GR+E+ ++ P D KL WTG W +
Sbjct: 481 LASENRDIPMKVAIERQMRLVKFEVGRIEIQPTEDAPADISGEFGRKLTEWTGIRWIVSV 540
Query: 130 SLG---------RCCEYFEIDSDIKAVRTI------FPTAQVVCIR 160
+ R ++ SD K+ T+ FP A+VV +R
Sbjct: 541 AKTGGRPTIHEEREANQAQLVSDAKSHPTVAALLSQFPGAKVVDVR 586
>gi|110636381|ref|YP_676589.1| DNA polymerase III subunits gamma and tau [Mesorhizobium sp. BNC1]
gi|110287365|gb|ABG65424.1| DNA polymerase III, tau subunit [Chelativorans sp. BNC1]
Length = 600
Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKN 119
P + EL + N D +R + +V E GRL V+ ++ P+ + +L +L+
Sbjct: 458 PVKSLADITELADANRDIAFKVQFKRCVRLVQIEPGRLSVNLTEDAPKTLLGDLTNRLQK 517
Query: 120 WTGEDWEIRFS 130
WTG W + S
Sbjct: 518 WTGRRWIVSLS 528
>gi|163867528|ref|YP_001608727.1| DNA polymerase III subunits gamma and tau [Bartonella tribocorum
CIP 105476]
gi|161017174|emb|CAK00732.1| DNA polymerase III gamma and tau subunit [Bartonella tribocorum CIP
105476]
Length = 646
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 15/114 (13%)
Query: 62 NYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWT 121
N +++L E++ D +++ F+H VSFE GR+ + + P+ ++ K+ W
Sbjct: 503 NSLHDIVKLAEQHSDVPFKLLVKEFVHPVSFETGRITLRLSENTPQFLAHDIEKKISQWA 562
Query: 122 GEDWEIRF---SLGRCCE------------YFEIDSDIKAVRTIFPTAQVVCIR 160
+ + + F G + + E D DI + FP A++V IR
Sbjct: 563 RKRYVVTFVNEGGGPTLQEESVAIQKTLFSHAETDPDIAKILNHFPEAKIVDIR 616
>gi|254438399|ref|ZP_05051893.1| DNA polymerase III, subunits gamma and tau, putative
[Octadecabacter antarcticus 307]
gi|198253845|gb|EDY78159.1| DNA polymerase III, subunits gamma and tau, putative
[Octadecabacter antarcticus 307]
Length = 590
Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 15/111 (13%)
Query: 66 QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDW 125
++EL ++ D K++ ++ + + +++ GR+E K P D + L ++L+ WTG W
Sbjct: 454 HIVELIRRHRDVKLLVEVETGMRLAAYQPGRIEFVPAKGAPSDLAQRLGSRLQAWTGNRW 513
Query: 126 EIRF-SLGRCCEYFEI-DSD-------------IKAVRTIFPTAQVVCIRT 161
+ + G EI D++ ++AV FP A++ IRT
Sbjct: 514 AVTLVNEGGAATIAEIRDTENNALRDKAKAHPLVQAVLMKFPGARITDIRT 564
>gi|304320347|ref|YP_003853990.1| DNA polymerase III subunits gamma and tau [Parvularcula bermudensis
HTCC2503]
gi|303299249|gb|ADM08848.1| DNA polymerase III subunits gamma and tau [Parvularcula bermudensis
HTCC2503]
Length = 607
Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 76 DYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDW---------E 126
D ++ E ++ L V E GRL+V+ + P+D L LK WTG W E
Sbjct: 501 DARLREEIETCLIPVHLETGRLDVAVTEAAPKDLTGRLGQALKAWTGRPWIVSIVADPGE 560
Query: 127 IRFSLGRCCEYFEIDSDIKAVRTIFPTAQVVCIRTI 162
+ GR + + + + A + FP A++ +R +
Sbjct: 561 VPTIRGRRNQAIKANPVVNAALSAFPKARIAAVRPL 596
>gi|159043203|ref|YP_001531997.1| DNA polymerase III subunits gamma and tau [Dinoroseobacter shibae
DFL 12]
gi|157910963|gb|ABV92396.1| DNA polymerase III [Dinoroseobacter shibae DFL 12]
Length = 587
Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 15/110 (13%)
Query: 67 LIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWE 126
++ L + D K++ ++ L + ++ GR+E + + P D LA +L++WTG W
Sbjct: 452 VVALIRSHRDVKLLVEVEGCLRLAAYSPGRIEFAPTENAPRDLAARLAARLQSWTGARWA 511
Query: 127 IR---------FSLGRCCEYFEIDSD------IKAVRTIFPTAQVVCIRT 161
+ + R E E++ + + AV FP A++ IRT
Sbjct: 512 VSVVAEADAPTIAETRDAEKLEMERNALDHPLVAAVFAAFPKARITEIRT 561
>gi|239830865|ref|ZP_04679194.1| DNA polymerase III, subunits gamma and tau [Ochrobactrum
intermedium LMG 3301]
gi|239823132|gb|EEQ94700.1| DNA polymerase III, subunits gamma and tau [Ochrobactrum
intermedium LMG 3301]
Length = 635
Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 16/163 (9%)
Query: 14 DALNVSSFAIGENALPRNISSDECFPL-AEAGITEKQDVLNRLSACTPDNYTKQLIELCE 72
DA+ SS A + E P E + +Q V P N ++ L +
Sbjct: 445 DAVGSSSMAPASGGPATAMRIVETPPQPVEPSVAPQQFVEPTPQPSVPINSLHDVVALAD 504
Query: 73 KNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEI---RF 129
K+ D + +++ + + S GRLE+ + P+ +++ +L NWTG W + R
Sbjct: 505 KHRDMQFKILVKSCVRLASIAPGRLEIGLTDDAPKSLPSDISQRLLNWTGIRWIVTVARD 564
Query: 130 SLGRCCEYFEI------------DSDIKAVRTIFPTAQVVCIR 160
G+ E D D+ A+ FP A++ +R
Sbjct: 565 VAGQTISEAETERRDNLVTDARADPDVAAILAAFPGAKITDVR 607
>gi|110678389|ref|YP_681396.1| DNA polymerase III subunits gamma and tau [Roseobacter
denitrificans OCh 114]
gi|109454505|gb|ABG30710.1| DNA polymerase III, tau subunit [Roseobacter denitrificans OCh 114]
Length = 582
Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 15/111 (13%)
Query: 66 QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDW 125
++EL N D K++ ++ + + ++ GR+E + + P D + L +L+ WTG W
Sbjct: 446 HVVELIRANRDVKLLVEVEGCVRLAQYQPGRIEFAPTENAPADLAQRLGQRLQLWTGNRW 505
Query: 126 EIRF-------SLGRCCEYFEIDSD--------IKAVRTIFPTAQVVCIRT 161
+ ++ + E+D ++AV T FP A++ I+T
Sbjct: 506 AVTIVNDASAPTIAEKRDAAELDLQSKALEHPLMQAVLTQFPKARITSIKT 556
>gi|149916416|ref|ZP_01904935.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. AzwK-3b]
gi|149809686|gb|EDM69540.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. AzwK-3b]
Length = 596
Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 15/112 (13%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ ++EL + D K++ ++ + +VS+ GR+ P+D + L L+ WTG
Sbjct: 459 EHVVELIRAHRDVKLLVEVETNMRLVSYRPGRITFQPTGNAPQDLSQRLGAALQRWTGNR 518
Query: 125 WEIRFSLGRCCEYFEIDSD---------------IKAVRTIFPTAQVVCIRT 161
W I + D ++AV + FP AQ+ IRT
Sbjct: 519 WGISLVNEGGADTIAEQRDAAETALRHEVSRHPLVQAVLSAFPKAQITSIRT 570
>gi|254474501|ref|ZP_05087887.1| DNA polymerase III, tau subunit [Ruegeria sp. R11]
gi|214028744|gb|EEB69579.1| DNA polymerase III, tau subunit [Ruegeria sp. R11]
Length = 607
Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ ++EL D ++E ++ +L +VS++ GR+ + + P+D L +L+NWT
Sbjct: 470 EHVLELIRVKRDGLLLEYVKTYLRLVSYQPGRITIQPTDDAPKDLAARLGQQLQNWTHAR 529
Query: 125 WEIRFSL---GRCCEYFEIDSD------------IKAVRTIFPTAQVVCIRTIPNL 165
W I + G E ++ ++AV FP A++ IRT +L
Sbjct: 530 WVISLANEGGGETITERENAAENALRAEASKHPIVQAVLENFPKAKITKIRTAEDL 585
>gi|254421036|ref|ZP_05034760.1| DNA polymerase III, subunits gamma and tau, putative [Brevundimonas
sp. BAL3]
gi|196187213|gb|EDX82189.1| DNA polymerase III, subunits gamma and tau, putative [Brevundimonas
sp. BAL3]
Length = 623
Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 55 LSACTPDNYT-KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENL 113
++ PD T +Q++ L + + + ++RF+ VSF+ G + ++ P + L
Sbjct: 481 MAPALPDPQTFEQVVALIGEKREVGLQMDVERFVKPVSFKPGAIVYESVEGAPVELARRL 540
Query: 114 ATKLKNWTGEDWEI-------------RFSLGRCCEYFEIDSD--IKAVRTIFPTAQVVC 158
A +L+ WTG W I R R E ++++D IKAV FP A++
Sbjct: 541 AGRLREWTGRTWLIAANGQGGGETLIERQKKERAAEREKVEADPFIKAVLLAFPGAKLGE 600
Query: 159 IRTI 162
I+TI
Sbjct: 601 IKTI 604
>gi|256112542|ref|ZP_05453463.1| DNA polymerase III subunits gamma and tau [Brucella melitensis bv.
3 str. Ether]
gi|265993981|ref|ZP_06106538.1| DNA polymerase III gamma and tau [Brucella melitensis bv. 3 str.
Ether]
gi|262764962|gb|EEZ10883.1| DNA polymerase III gamma and tau [Brucella melitensis bv. 3 str.
Ether]
Length = 602
Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKN 119
P N + +I L +K D + +++ + S GRLE+ + P+ ++A L N
Sbjct: 459 PINSLQDIIALADKYRDMQFKILVKNCVRPASIAPGRLEIGLTDDAPKSLPSDIAQHLLN 518
Query: 120 WTGEDWEI---RFSLGRCCEYFE------------IDSDIKAVRTIFPTAQVVCIR-TIP 163
WTG W + R G+ E D D+ A+ FP A+++ +R +P
Sbjct: 519 WTGIRWVVTVARDVAGQTIAEAEAERRDNLVTDARADPDVAAILAAFPGAKIIDVRIAVP 578
Query: 164 N 164
+
Sbjct: 579 D 579
>gi|254453888|ref|ZP_05067325.1| DNA polymerase III, gamma and tau subunit [Octadecabacter
antarcticus 238]
gi|198268294|gb|EDY92564.1| DNA polymerase III, gamma and tau subunit [Octadecabacter
antarcticus 238]
Length = 586
Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ ++EL ++ D K++ ++ + + +++ GR+E K P D + L ++L+ WTG
Sbjct: 449 EHIVELIRRHRDVKLLVEVETGVRLAAYQPGRIEFVPAKGAPHDLAQRLGSRLQAWTGNR 508
Query: 125 WEIRF----SLGRCCEYFEIDSD-----------IKAVRTIFPTAQVVCIRT 161
W + E +I+++ ++AV FP A++ IRT
Sbjct: 509 WAVTLVNEGGGETIAEVRDIETNALRDKAQAHPLVQAVLMKFPGARITDIRT 560
>gi|319403646|emb|CBI77231.1| DNA polymerase III subunit tau [Bartonella rochalimae ATCC
BAA-1498]
Length = 630
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 69/154 (44%), Gaps = 25/154 (16%)
Query: 23 IGENALPRNI-SSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVE 81
+ N L +NI +S + P + T+++ +++ L + +++L +++++
Sbjct: 462 VQTNQLNKNIINSSQIDPQLDTKATKEKIIIDSL---------QDIVDLADQHNEIHFKL 512
Query: 82 MLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRF------------ 129
+++ F+H VSFE + + +E P ++ L WTG+ W I
Sbjct: 513 LIKEFVHPVSFEPQHITLRLAEEAPRSLERDIKKMLYQWTGKHWNITLVNEGGKPTLQEE 572
Query: 130 SLGRCCEYF---EIDSDIKAVRTIFPTAQVVCIR 160
S+ F + D DI + FP A+++ IR
Sbjct: 573 SVAIQKSLFADAQTDPDIAKILNTFPGAKIIDIR 606
>gi|170749547|ref|YP_001755807.1| DNA polymerase III, subunits gamma and tau [Methylobacterium
radiotolerans JCM 2831]
gi|170656069|gb|ACB25124.1| DNA polymerase III, subunits gamma and tau [Methylobacterium
radiotolerans JCM 2831]
Length = 637
Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ LI L + N D + L+R +H+V FE GR+E ++A ++ WTG
Sbjct: 496 EDLIALADANRDILLRTALERDVHLVRFEEGRMEFRLASGGRSSLATDIAAAIERWTGRR 555
Query: 125 WEIRFSLGRCCEYFEI---------------DSDIKAVRTIFPTAQVVCIR 160
W + S + D ++ V T FP A++V +R
Sbjct: 556 WVVALSKDEGAPTLDAAARAATETRRENAAADPFVREVLTRFPGAEIVDVR 606
>gi|297182771|gb|ADI18925.1| DNA polymerase III, gamma/tau subunits [uncultured SAR11 cluster
bacterium HF0010_09O16]
Length = 557
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 42/64 (65%)
Query: 67 LIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWE 126
L+ +C + + K+ L++ +++V F+ ++E+SF + + ++F+++L+ KL WTGE W
Sbjct: 443 LLIICNQKKEIKLKYELEKNVNLVRFDNKQIEISFNENLDKNFVKDLSLKLFEWTGERWI 502
Query: 127 IRFS 130
I S
Sbjct: 503 ITLS 506
>gi|306842673|ref|ZP_07475317.1| DNA polymerase III, subunits gamma and tau [Brucella sp. BO2]
gi|306287182|gb|EFM58681.1| DNA polymerase III, subunits gamma and tau [Brucella sp. BO2]
Length = 602
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKN 119
P N + ++ L +K D + +++ + S GRLE+ + P+ ++A L N
Sbjct: 459 PINSLQDIVALADKYRDMQFKILVKNCVRPASIAPGRLEIGLTDDAPKSLPSDIAQHLLN 518
Query: 120 WTGEDWEI---RFSLGRCCEYFE------------IDSDIKAVRTIFPTAQVVCIR-TIP 163
WTG W + R G+ E D D+ A+ FP A+++ +R +P
Sbjct: 519 WTGIRWVVTVARDVAGQTIAEAEAERRDNLVTDARADPDVAAILAAFPGAKIIDVRIAVP 578
Query: 164 N 164
+
Sbjct: 579 D 579
>gi|306843634|ref|ZP_07476235.1| DNA polymerase III, subunits gamma and tau [Brucella sp. BO1]
gi|306276325|gb|EFM58025.1| DNA polymerase III, subunits gamma and tau [Brucella sp. BO1]
Length = 602
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKN 119
P N + ++ L +K D + +++ + S GRLE+ + P+ ++A L N
Sbjct: 459 PINSLQDIVALADKYRDMQFKILVKNCVRPASIAPGRLEIGLTDDAPKSLPSDIAQHLLN 518
Query: 120 WTGEDWEI---RFSLGRCCEYFE------------IDSDIKAVRTIFPTAQVVCIR-TIP 163
WTG W + R G+ E D D+ A+ FP A+++ +R +P
Sbjct: 519 WTGIRWVVTVARDVAGQTIAEAEAERRDNLVTDARADPDVAAILAAFPGAKIIDVRIAVP 578
Query: 164 N 164
+
Sbjct: 579 D 579
>gi|254718255|ref|ZP_05180066.1| DNA polymerase III subunits gamma and tau [Brucella sp. 83/13]
gi|265983215|ref|ZP_06095950.1| DNA polymerase III gamma and tau [Brucella sp. 83/13]
gi|306839997|ref|ZP_07472791.1| DNA polymerase III, subunits gamma and tau [Brucella sp. NF 2653]
gi|264661807|gb|EEZ32068.1| DNA polymerase III gamma and tau [Brucella sp. 83/13]
gi|306404961|gb|EFM61246.1| DNA polymerase III, subunits gamma and tau [Brucella sp. NF 2653]
Length = 602
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKN 119
P N + ++ L +K D + +++ + S GRLE+ + P+ ++A L N
Sbjct: 459 PINSLQDIVALADKYRDMQFKILVKNCVRPASIAPGRLEIGLTDDAPKSLPSDIAQHLLN 518
Query: 120 WTGEDWEI---RFSLGRCCEYFE------------IDSDIKAVRTIFPTAQVVCIR-TIP 163
WTG W + R G+ E D D+ A+ FP A+++ +R +P
Sbjct: 519 WTGIRWVVTVARDVAGQTIAEAEAERRDNLVTDARADPDVAAILAAFPGAKIIDVRIAVP 578
Query: 164 N 164
+
Sbjct: 579 D 579
>gi|254713381|ref|ZP_05175192.1| DNA polymerase III subunits gamma and tau [Brucella ceti M644/93/1]
gi|254716261|ref|ZP_05178072.1| DNA polymerase III subunits gamma and tau [Brucella ceti M13/05/1]
gi|261218037|ref|ZP_05932318.1| DNA polymerase III gamma and tau [Brucella ceti M13/05/1]
gi|261321113|ref|ZP_05960310.1| DNA polymerase III gamma and tau [Brucella ceti M644/93/1]
gi|260923126|gb|EEX89694.1| DNA polymerase III gamma and tau [Brucella ceti M13/05/1]
gi|261293803|gb|EEX97299.1| DNA polymerase III gamma and tau [Brucella ceti M644/93/1]
Length = 602
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKN 119
P N + ++ L +K D + +++ + S GRLE+ + P+ ++A L N
Sbjct: 459 PINSLQDIVALADKYRDMQFKILVKNCVRPASIAPGRLEIGLTDDAPKSLPSDIAQHLLN 518
Query: 120 WTGEDWEI---RFSLGRCCEYFE------------IDSDIKAVRTIFPTAQVVCIR-TIP 163
WTG W + R G+ E D D+ A+ FP A+++ +R +P
Sbjct: 519 WTGIRWVVTVARDVAGQTIAEAEAERRDNLVTDARADPDVAAILAAFPGAKIIDVRIAVP 578
Query: 164 N 164
+
Sbjct: 579 D 579
>gi|254707264|ref|ZP_05169092.1| DNA polymerase III subunits gamma and tau [Brucella pinnipedialis
M163/99/10]
gi|261314747|ref|ZP_05953944.1| DNA polymerase III gamma and tau [Brucella pinnipedialis
M163/99/10]
gi|261303773|gb|EEY07270.1| DNA polymerase III gamma and tau [Brucella pinnipedialis
M163/99/10]
Length = 602
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKN 119
P N + ++ L +K D + +++ + S GRLE+ + P+ ++A L N
Sbjct: 459 PINSLQDIVALADKYRDMQFKILVKNCVRPASIAPGRLEIGLTDDAPKSLPSDIAQHLLN 518
Query: 120 WTGEDWEI---RFSLGRCCEYFE------------IDSDIKAVRTIFPTAQVVCIR-TIP 163
WTG W + R G+ E D D+ A+ FP A+++ +R +P
Sbjct: 519 WTGIRWVVTVARDVAGQTIAEAEAERRDNLVTDARADPDVAAILAAFPGAKIIDVRIAVP 578
Query: 164 N 164
+
Sbjct: 579 D 579
>gi|254694837|ref|ZP_05156665.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 3
str. Tulya]
gi|261215165|ref|ZP_05929446.1| DNA polymerase III gamma and tau [Brucella abortus bv. 3 str.
Tulya]
gi|260916772|gb|EEX83633.1| DNA polymerase III gamma and tau [Brucella abortus bv. 3 str.
Tulya]
Length = 602
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKN 119
P N + ++ L +K D + +++ + S GRLE+ + P+ ++A L N
Sbjct: 459 PINSLQDIVALADKYRDMQFKILVKNCVRPASIAPGRLEIGLTDDAPKSLPSDIAQHLLN 518
Query: 120 WTGEDWEI---RFSLGRCCEYFE------------IDSDIKAVRTIFPTAQVVCIR-TIP 163
WTG W + R G+ E D D+ A+ FP A+++ +R +P
Sbjct: 519 WTGIRWVVTVARDVAGQTIAEAEAERRDNLVTDARADPDVAAILAAFPGAKIIDVRIAVP 578
Query: 164 N 164
+
Sbjct: 579 D 579
>gi|225626583|ref|ZP_03784622.1| DNA polymerase III, subunits gamma and tau [Brucella ceti str.
Cudo]
gi|260169621|ref|ZP_05756432.1| DNA polymerase III subunits gamma and tau [Brucella sp. F5/99]
gi|261759150|ref|ZP_06002859.1| DNA polymerase III gamma and tau [Brucella sp. F5/99]
gi|225618240|gb|EEH15283.1| DNA polymerase III, subunits gamma and tau [Brucella ceti str.
Cudo]
gi|261739134|gb|EEY27130.1| DNA polymerase III gamma and tau [Brucella sp. F5/99]
Length = 602
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKN 119
P N + ++ L +K D + +++ + S GRLE+ + P+ ++A L N
Sbjct: 459 PINSLQDIVALADKYRDMQFKILVKNCVRPASIAPGRLEIGLTDDAPKSLPSDIAQHLLN 518
Query: 120 WTGEDWEI---RFSLGRCCEYFE------------IDSDIKAVRTIFPTAQVVCIR-TIP 163
WTG W + R G+ E D D+ A+ FP A+++ +R +P
Sbjct: 519 WTGIRWVVTVARDVAGQTIAEAEAERRDNLVTDARADPDVAAILAAFPGAKIIDVRIAVP 578
Query: 164 N 164
+
Sbjct: 579 D 579
>gi|163842310|ref|YP_001626714.1| DNA polymerase III subunits gamma and tau [Brucella suis ATCC
23445]
gi|163673033|gb|ABY37144.1| DNA polymerase III, subunits gamma and tau [Brucella suis ATCC
23445]
Length = 602
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKN 119
P N + ++ L +K D + +++ + S GRLE+ + P+ ++A L N
Sbjct: 459 PINSLQDIVALADKYRDMQFKILVKNCVRPASIAPGRLEIGLTDDAPKSLPSDIAQHLLN 518
Query: 120 WTGEDWEI---RFSLGRCCEYFE------------IDSDIKAVRTIFPTAQVVCIR-TIP 163
WTG W + R G+ E D D+ A+ FP A+++ +R +P
Sbjct: 519 WTGIRWVVTVARDVAGQTIAEAEAERRDNLVTDARADPDVAAILAAFPGAKIIDVRIAVP 578
Query: 164 N 164
+
Sbjct: 579 D 579
>gi|148559186|ref|YP_001258081.1| DNA polymerase III subunits gamma and tau [Brucella ovis ATCC
25840]
gi|148370443|gb|ABQ60422.1| replication factor C conserved domain:ATP/GTP-binding site motif A
[Brucella ovis ATCC 25840]
Length = 602
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKN 119
P N + ++ L +K D + +++ + S GRLE+ + P+ ++A L N
Sbjct: 459 PINSLQDIVALADKYRDMQFKILVKNCVRPASIAPGRLEIGLTDDAPKSLPSDIAQHLLN 518
Query: 120 WTGEDWEI---RFSLGRCCEYFE------------IDSDIKAVRTIFPTAQVVCIR-TIP 163
WTG W + R G+ E D D+ A+ FP A+++ +R +P
Sbjct: 519 WTGIRWVVTVARDVAGQTIAEAEAERRDNLVTDARADPDVAAILAAFPGAKIIDVRIAVP 578
Query: 164 N 164
+
Sbjct: 579 D 579
>gi|17988191|ref|NP_540825.1| DNA polymerase III subunits gamma and tau [Brucella melitensis bv.
1 str. 16M]
gi|225851577|ref|YP_002731810.1| DNA polymerase III subunits gamma and tau [Brucella melitensis ATCC
23457]
gi|256045825|ref|ZP_05448701.1| DNA polymerase III subunits gamma and tau [Brucella melitensis bv.
1 str. Rev.1]
gi|256264911|ref|ZP_05467443.1| DNA polymerase III subunit gamma and tau [Brucella melitensis bv. 2
str. 63/9]
gi|260563116|ref|ZP_05833602.1| DNA polymerase III gamma and tau subunit [Brucella melitensis bv. 1
str. 16M]
gi|265992238|ref|ZP_06104795.1| DNA polymerase III gamma and tau [Brucella melitensis bv. 1 str.
Rev.1]
gi|17983953|gb|AAL53089.1| DNA polymerase iii subunits gamma and tau [Brucella melitensis bv.
1 str. 16M]
gi|225639942|gb|ACN99855.1| DNA polymerase III, subunits gamma and tau [Brucella melitensis
ATCC 23457]
gi|260153132|gb|EEW88224.1| DNA polymerase III gamma and tau subunit [Brucella melitensis bv. 1
str. 16M]
gi|263003304|gb|EEZ15597.1| DNA polymerase III gamma and tau [Brucella melitensis bv. 1 str.
Rev.1]
gi|263095396|gb|EEZ18997.1| DNA polymerase III subunit gamma and tau [Brucella melitensis bv. 2
str. 63/9]
gi|326408046|gb|ADZ65111.1| DNA polymerase III subunits gamma and tau [Brucella melitensis M28]
gi|326537763|gb|ADZ85978.1| DNA polymerase III, subunits gamma and tau [Brucella melitensis
M5-90]
Length = 602
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKN 119
P N + ++ L +K D + +++ + S GRLE+ + P+ ++A L N
Sbjct: 459 PINSLQDIVALADKYRDMQFKILVKNCVRPASIAPGRLEIGLTDDAPKSLPSDIAQHLLN 518
Query: 120 WTGEDWEI---RFSLGRCCEYFE------------IDSDIKAVRTIFPTAQVVCIR-TIP 163
WTG W + R G+ E D D+ A+ FP A+++ +R +P
Sbjct: 519 WTGIRWVVTVARDVAGQTIAEAEAERRDNLVTDARADPDVAAILAAFPGAKIIDVRIAVP 578
Query: 164 N 164
+
Sbjct: 579 D 579
>gi|23500949|ref|NP_697076.1| DNA polymerase III subunits gamma and tau [Brucella suis 1330]
gi|23346805|gb|AAN28991.1| DNA polymerase III, gamma and tau subunits [Brucella suis 1330]
Length = 602
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKN 119
P N + ++ L +K D + +++ + S GRLE+ + P+ ++A L N
Sbjct: 459 PINSLQDIVALADKYRDMQFKILVKNCVRPASIAPGRLEIGLTDDAPKSLPSDIAQHLLN 518
Query: 120 WTGEDWEI---RFSLGRCCEYFE------------IDSDIKAVRTIFPTAQVVCIR-TIP 163
WTG W + R G+ E D D+ A+ FP A+++ +R +P
Sbjct: 519 WTGIRWVVTVARDVAGQTIAEAEAERRDNLVTDARADPDVAAILAAFPGAKIIDVRIAVP 578
Query: 164 N 164
+
Sbjct: 579 D 579
>gi|62289022|ref|YP_220815.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 1
str. 9-941]
gi|82698960|ref|YP_413534.1| DNA polymerase III subunits gamma and tau [Brucella melitensis
biovar Abortus 2308]
gi|161618024|ref|YP_001591911.1| DNA polymerase III subunits gamma and tau [Brucella canis ATCC
23365]
gi|189023298|ref|YP_001934066.1| DNA polymerase III subunits gamma and tau [Brucella abortus S19]
gi|237814509|ref|ZP_04593507.1| DNA polymerase III, subunits gamma and tau [Brucella abortus str.
2308 A]
gi|254690348|ref|ZP_05153602.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 6
str. 870]
gi|254696466|ref|ZP_05158294.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 2
str. 86/8/59]
gi|254700849|ref|ZP_05162677.1| DNA polymerase III subunits gamma and tau [Brucella suis bv. 5 str.
513]
gi|254705216|ref|ZP_05167044.1| DNA polymerase III subunits gamma and tau [Brucella suis bv. 3 str.
686]
gi|254709194|ref|ZP_05171005.1| DNA polymerase III subunits gamma and tau [Brucella pinnipedialis
B2/94]
gi|254731378|ref|ZP_05189956.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 4
str. 292]
gi|256030718|ref|ZP_05444332.1| DNA polymerase III subunits gamma and tau [Brucella pinnipedialis
M292/94/1]
gi|256060177|ref|ZP_05450357.1| DNA polymerase III subunits gamma and tau [Brucella neotomae 5K33]
gi|256158724|ref|ZP_05456599.1| DNA polymerase III subunits gamma and tau [Brucella ceti M490/95/1]
gi|256254122|ref|ZP_05459658.1| DNA polymerase III subunits gamma and tau [Brucella ceti B1/94]
gi|256258602|ref|ZP_05464138.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 9
str. C68]
gi|256368500|ref|YP_003106006.1| DNA polymerase III subunits gamma and tau [Brucella microti CCM
4915]
gi|260546316|ref|ZP_05822056.1| DNA polymerase III gamma and tau subunit [Brucella abortus NCTC
8038]
gi|260567317|ref|ZP_05837787.1| DNA polymerase III gamma and tau [Brucella suis bv. 4 str. 40]
gi|260755890|ref|ZP_05868238.1| DNA polymerase III gamma and tau [Brucella abortus bv. 6 str. 870]
gi|260759114|ref|ZP_05871462.1| DNA polymerase III gamma and tau [Brucella abortus bv. 4 str. 292]
gi|260760839|ref|ZP_05873182.1| DNA polymerase III gamma and tau [Brucella abortus bv. 2 str.
86/8/59]
gi|260884914|ref|ZP_05896528.1| DNA polymerase III gamma and tau [Brucella abortus bv. 9 str. C68]
gi|261221264|ref|ZP_05935545.1| DNA polymerase III gamma and tau [Brucella ceti B1/94]
gi|261316694|ref|ZP_05955891.1| DNA polymerase III gamma and tau [Brucella pinnipedialis B2/94]
gi|261324154|ref|ZP_05963351.1| DNA polymerase III gamma and tau [Brucella neotomae 5K33]
gi|261751359|ref|ZP_05995068.1| DNA polymerase III gamma and tau [Brucella suis bv. 5 str. 513]
gi|261755924|ref|ZP_05999633.1| DNA polymerase III gamma and tau [Brucella suis bv. 3 str. 686]
gi|265987764|ref|ZP_06100321.1| DNA polymerase III gamma and tau [Brucella pinnipedialis M292/94/1]
gi|265997225|ref|ZP_06109782.1| DNA polymerase III gamma and tau [Brucella ceti M490/95/1]
gi|297247441|ref|ZP_06931159.1| DNA polymerase III subunit gamma/tau [Brucella abortus bv. 5 str.
B3196]
gi|62195154|gb|AAX73454.1| DnaX, DNA polymerase III, gamma and tau subunits [Brucella abortus
bv. 1 str. 9-941]
gi|82615061|emb|CAJ09987.1| Replication factor C conserved domain:ATP/GTP-binding site motif A
(P-loop):AAA ATPase:AAA ATPase, central region [Brucella
melitensis biovar Abortus 2308]
gi|161334835|gb|ABX61140.1| DNA polymerase III, subunits gamma and tau [Brucella canis ATCC
23365]
gi|189018870|gb|ACD71592.1| DNA polymerase III subunits gamma and tau [Brucella abortus S19]
gi|237789346|gb|EEP63556.1| DNA polymerase III, subunits gamma and tau [Brucella abortus str.
2308 A]
gi|255998658|gb|ACU47057.1| DNA polymerase III subunits gamma and tau [Brucella microti CCM
4915]
gi|260096423|gb|EEW80299.1| DNA polymerase III gamma and tau subunit [Brucella abortus NCTC
8038]
gi|260156835|gb|EEW91915.1| DNA polymerase III gamma and tau [Brucella suis bv. 4 str. 40]
gi|260669432|gb|EEX56372.1| DNA polymerase III gamma and tau [Brucella abortus bv. 4 str. 292]
gi|260671271|gb|EEX58092.1| DNA polymerase III gamma and tau [Brucella abortus bv. 2 str.
86/8/59]
gi|260675998|gb|EEX62819.1| DNA polymerase III gamma and tau [Brucella abortus bv. 6 str. 870]
gi|260874442|gb|EEX81511.1| DNA polymerase III gamma and tau [Brucella abortus bv. 9 str. C68]
gi|260919848|gb|EEX86501.1| DNA polymerase III gamma and tau [Brucella ceti B1/94]
gi|261295917|gb|EEX99413.1| DNA polymerase III gamma and tau [Brucella pinnipedialis B2/94]
gi|261300134|gb|EEY03631.1| DNA polymerase III gamma and tau [Brucella neotomae 5K33]
gi|261741112|gb|EEY29038.1| DNA polymerase III gamma and tau [Brucella suis bv. 5 str. 513]
gi|261745677|gb|EEY33603.1| DNA polymerase III gamma and tau [Brucella suis bv. 3 str. 686]
gi|262551693|gb|EEZ07683.1| DNA polymerase III gamma and tau [Brucella ceti M490/95/1]
gi|264659961|gb|EEZ30222.1| DNA polymerase III gamma and tau [Brucella pinnipedialis M292/94/1]
gi|297174610|gb|EFH33957.1| DNA polymerase III subunit gamma/tau [Brucella abortus bv. 5 str.
B3196]
Length = 602
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKN 119
P N + ++ L +K D + +++ + S GRLE+ + P+ ++A L N
Sbjct: 459 PINSLQDIVALADKYRDMQFKILVKNCVRPASIAPGRLEIGLTDDAPKSLPSDIAQHLLN 518
Query: 120 WTGEDWEI---RFSLGRCCEYFE------------IDSDIKAVRTIFPTAQVVCIR-TIP 163
WTG W + R G+ E D D+ A+ FP A+++ +R +P
Sbjct: 519 WTGIRWVVTVARDVAGQTIAEAEAERRDNLVTDARADPDVAAILAAFPGAKIIDVRIAVP 578
Query: 164 N 164
+
Sbjct: 579 D 579
>gi|49473886|ref|YP_031928.1| DNA polymerase III subunits gamma and tau [Bartonella quintana str.
Toulouse]
gi|49239389|emb|CAF25723.1| DNA polymerase III subunit tau [Bartonella quintana str. Toulouse]
Length = 640
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 15/109 (13%)
Query: 67 LIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWE 126
+I+L E+ ++ +++ F+H VSFE G + + + P ++ L WT + W
Sbjct: 508 IIKLAEQYNEIPFKLLVKEFVHPVSFEPGHIILRLAENAPRSLARDIKKMLSQWTEKRWT 567
Query: 127 IRF------------SLGRCCEYF---EIDSDIKAVRTIFPTAQVVCIR 160
I F S+ F E D DI + FP A++V IR
Sbjct: 568 ITFVNEGGGPTLQEESMAVQKTLFSNAEADPDIAKILNHFPEAKIVDIR 616
>gi|114763364|ref|ZP_01442771.1| DNA polymerase III subunits gamma and tau [Pelagibaca bermudensis
HTCC2601]
gi|114543902|gb|EAU46913.1| DNA polymerase III subunits gamma and tau [Roseovarius sp.
HTCC2601]
Length = 588
Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 19/114 (16%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ ++EL N D ++ ++R + + +++ GR+E + D + L + L+ WTG
Sbjct: 451 EHVVELIRANRDMTLLMEVERCVRLAAYQPGRIEFTPTNNARGDLAQRLGSALQRWTGNR 510
Query: 125 WEIRFSLGRCCEYFEIDSD-----------------IKAVRTIFPTAQVVCIRT 161
W + SL CE I ++A FP A++V IRT
Sbjct: 511 WGV--SLVNGCETATIWEQTHAAELAMKAEAAEHPLVQAALAAFPKAEIVEIRT 562
>gi|92116083|ref|YP_575812.1| DNA polymerase III subunits gamma and tau [Nitrobacter hamburgensis
X14]
gi|91798977|gb|ABE61352.1| DNA polymerase III, subunits gamma and tau [Nitrobacter
hamburgensis X14]
Length = 615
Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 19/149 (12%)
Query: 29 PRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLH 88
PR + P A IT D + A +++T +L+ L + D + L+ +
Sbjct: 448 PRAAAEPASRPQA---ITPMVDPTGAVPAVRLESFT-ELVALAGEKRDLIIKAALEADMR 503
Query: 89 VVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFS------------LGRCCE 136
+V E GRLEV+ + + LA KL+ WTG W + S L + E
Sbjct: 504 LVRMEDGRLEVALERSAARTLVNELARKLEQWTGRRWTVIVSNEPGQPTLRSQALLQKNE 563
Query: 137 Y---FEIDSDIKAVRTIFPTAQVVCIRTI 162
E D +K V FP A+VV +R +
Sbjct: 564 RERAAEADPRVKDVLARFPGAKVVEVRKL 592
>gi|83951302|ref|ZP_00960034.1| DNA polymerase III subunits gamma and tau [Roseovarius nubinhibens
ISM]
gi|83836308|gb|EAP75605.1| DNA polymerase III subunits gamma and tau [Roseovarius nubinhibens
ISM]
Length = 620
Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ +IEL N D K++ ++ L + ++ GR+E + ++ D + L + L+ WTG
Sbjct: 483 EHVIELIRANRDVKLLVEVENCLRLAAYRPGRIEFAPTEDAAPDLAQKLGSALQRWTGNR 542
Query: 125 WEIRFSLGRCCEYFEIDSD---------------IKAVRTIFPTAQVVCIRT 161
W + E D ++AV FP+A+++ IRT
Sbjct: 543 WAVTVVAEGGDETIAEKRDAARLALEAEAKKHALVQAVIANFPSAKILDIRT 594
>gi|329849471|ref|ZP_08264317.1| DNA polymerase III, subunits gamma and tau [Asticcacaulis
biprosthecum C19]
gi|328841382|gb|EGF90952.1| DNA polymerase III, subunits gamma and tau [Asticcacaulis
biprosthecum C19]
Length = 602
Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 15/113 (13%)
Query: 66 QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDW 125
Q++ L + D + +++++ ++SF+ G + P D + L+ +L+ WTGE W
Sbjct: 468 QVLTLIAERRDIGLRTDVEQYVRLISFKPGAITFELAPRAPADLVRRLSMRLREWTGERW 527
Query: 126 EIRFSLGRCCE---------------YFEIDSDIKAVRTIFPTAQVVCIRTIP 163
I G E + D + + FP A++ +R P
Sbjct: 528 LIATEGGGGAESVYERDKRENDAARARLKADPFVAKLLETFPGAEITAVRARP 580
>gi|149203327|ref|ZP_01880297.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. TM1035]
gi|149143160|gb|EDM31199.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. TM1035]
Length = 588
Score = 43.1 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 46 TEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEI 105
T+ ++VL+R + + ++EL N D K++ ++ + + ++ GR+E + +
Sbjct: 438 TDPEEVLSRYPS------FEHVLELIRANRDVKLLLEVEGHIRLANYRPGRIEFTPTPDA 491
Query: 106 PEDFIENLATKLKNWTGEDWEI 127
P D + L + L+ WTG W +
Sbjct: 492 PGDLAQRLGSALQRWTGNRWAV 513
>gi|84500405|ref|ZP_00998654.1| DNA polymerase III subunits gamma and tau [Oceanicola batsensis
HTCC2597]
gi|84391358|gb|EAQ03690.1| DNA polymerase III subunits gamma and tau [Oceanicola batsensis
HTCC2597]
Length = 581
Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 66 QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDW 125
++EL N D K++ ++ + +V + GR+E + P D + L +L+ WTG W
Sbjct: 445 HVVELIRANRDVKLLVEVETCVRLVGYRPGRIEFVPTGDAPRDLAQKLGARLQGWTGNRW 504
Query: 126 EI 127
+
Sbjct: 505 AV 506
>gi|319406562|emb|CBI80204.1| DNA polymerase III, subunits gamma and tau [Bartonella sp. 1-1C]
Length = 604
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ +++L +++++ +++ FLH VSFE + + +E P ++ L WTG+
Sbjct: 470 QDIVDLADQHNEIHFKLLIKEFLHPVSFEPQHITLRLAEEAPRSLERDIKKMLYQWTGKH 529
Query: 125 WEIRF------------SLGRCCEYF---EIDSDIKAVRTIFPTAQVVCIR 160
W I S+ F + D DI + FP A+++ IR
Sbjct: 530 WTITLVNEGGKPTLQEESVAIQKSLFADAQTDPDIAKILNHFPGAKIIDIR 580
>gi|312114329|ref|YP_004011925.1| DNA polymerase III subunits gamma and tau [Rhodomicrobium vannielii
ATCC 17100]
gi|311219458|gb|ADP70826.1| DNA polymerase III, subunits gamma and tau [Rhodomicrobium
vannielii ATCC 17100]
Length = 574
Score = 42.7 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 15/113 (13%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
++++E D + + L+ + +V F G LE+ L+ P+ LA KL+ WTGE
Sbjct: 461 EEIVEKVRAARDIMLQKALEERVELVKFGPGFLELRLLEGAPQSLAPELAKKLQAWTGER 520
Query: 125 WEIRFSLGRCC---------EYFEIDSDIK---AVRTI---FPTAQVVCIRTI 162
W + S R E + +I+ AV++I FP A++ +R +
Sbjct: 521 WIVSLSEERGLPPLGARMRDEKAQAKEEIRKHPAVKSILHHFPDAEITDVRKL 573
>gi|294085056|ref|YP_003551816.1| replication factor C domain-containing protein [Candidatus
Puniceispirillum marinum IMCC1322]
gi|292664631|gb|ADE39732.1| replication factor C conserved domain:ATP/GTP-binding site motif A
[Candidatus Puniceispirillum marinum IMCC1322]
Length = 620
Score = 42.7 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKN 119
P N + L E + + +++ + +V+ + G LE++ + PE F+ +LA L++
Sbjct: 481 PLNTLADIATLAEDKGEMLLAALIRNHVRLVALQPGLLEIALSGKPPEKFLGDLAQHLRH 540
Query: 120 WTGEDWEIRFS 130
WTG W + S
Sbjct: 541 WTGARWLVSLS 551
>gi|85703838|ref|ZP_01034941.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. 217]
gi|85671158|gb|EAQ26016.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. 217]
Length = 587
Score = 42.7 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 34/63 (53%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ ++EL N D K++ ++ L + ++ GR+E + + P D + L + L+ WTG
Sbjct: 450 EHMLELIRTNRDVKLLLEVEGSLRLANYRPGRIEFTPTPDAPGDLAQRLGSALQRWTGNR 509
Query: 125 WEI 127
W +
Sbjct: 510 WAV 512
>gi|298294413|ref|YP_003696352.1| DNA polymerase III subunits gamma and tau [Starkeya novella DSM
506]
gi|296930924|gb|ADH91733.1| DNA polymerase III, subunits gamma and tau [Starkeya novella DSM
506]
Length = 658
Score = 42.7 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 36/66 (54%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
++L+ L + D +M L+ + +V+FE G+LE++ + ++ L KL WTG+
Sbjct: 515 EELVALASQKRDLRMKFALENNVRLVAFEDGKLELALAAGGSPNLVQELQGKLSEWTGKR 574
Query: 125 WEIRFS 130
W + S
Sbjct: 575 WLVALS 580
>gi|163732699|ref|ZP_02140144.1| DNA polymerase III subunits gamma and tau [Roseobacter litoralis
Och 149]
gi|161394059|gb|EDQ18383.1| DNA polymerase III subunits gamma and tau [Roseobacter litoralis
Och 149]
Length = 584
Score = 42.7 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 66 QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDW 125
++EL N D K++ ++ + + ++ GR+E + + P D + L +L+ WTG W
Sbjct: 448 HVVELIRTNRDVKLLVEVEGCVRLAQYQPGRIEFAPTENAPADLAQRLGQRLQLWTGNRW 507
Query: 126 EIRF-------SLGRCCEYFEIDSD--------IKAVRTIFPTAQVVCIRT 161
+ ++ + E+D ++AV FP A++ I+T
Sbjct: 508 AVTIVNDASAPTIAEKRDAAELDLQSKALAHPMMQAVLAQFPKARITSIKT 558
>gi|154250711|ref|YP_001411535.1| DNA polymerase III subunits gamma and tau [Parvibaculum
lavamentivorans DS-1]
gi|154154661|gb|ABS61878.1| DNA polymerase III, subunits gamma and tau [Parvibaculum
lavamentivorans DS-1]
Length = 623
Score = 42.7 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 17/113 (15%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ ++ L K D ++ L+ + +VSFE GR+E+S L+ + L+ L TG
Sbjct: 481 EDVVALVSKQRDIRLKHALEAGVRLVSFEPGRIEISLLEGTQSTIVSELSDTLSKATGTR 540
Query: 125 WEIRFSLG-----------------RCCEYFEIDSDIKAVRTIFPTAQVVCIR 160
W + + G E D +KA FP A++V +R
Sbjct: 541 WFVSVARGPAPATPTLREQAQTREEAARETARADPLVKAALAAFPGAEIVNVR 593
>gi|254500517|ref|ZP_05112668.1| DNA polymerase III, subunits gamma and tau, putative [Labrenzia
alexandrii DFL-11]
gi|222436588|gb|EEE43267.1| DNA polymerase III, subunits gamma and tau, putative [Labrenzia
alexandrii DFL-11]
Length = 654
Score = 42.4 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 15/108 (13%)
Query: 68 IELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEI 127
+ L + D M +QR + +V FE G++E+ + P D KL WTG+ W +
Sbjct: 516 VALASEKRDIPMKVAIQRQMRLVKFEPGKIEIQPTDDAPADIAGEFGRKLTEWTGQRWFV 575
Query: 128 RFS--LGRCCEYFEID-------SDIKAVRTI------FPTAQVVCIR 160
S GR + E + SD K+ T+ FP A+V+ ++
Sbjct: 576 VVSRTQGRPTIHEEQEANQQQLLSDAKSHPTVAALLAQFPGAKVIDVK 623
>gi|294851443|ref|ZP_06792116.1| DNA polymerase III subunit gamma/tau [Brucella sp. NVSL 07-0026]
gi|294820032|gb|EFG37031.1| DNA polymerase III subunit gamma/tau [Brucella sp. NVSL 07-0026]
Length = 602
Score = 42.4 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKN 119
P N + ++ L +K D + +++ + S GRLE+ + P+ ++A L N
Sbjct: 459 PINSLQDIVALADKYRDMQFKILVKNCVRPASIAPGRLEIGLTDDAPKSLPIDIAQHLLN 518
Query: 120 WTGEDWEI---RFSLGRCCEYFE------------IDSDIKAVRTIFPTAQVVCIR-TIP 163
WTG W + R G+ E D D+ A+ FP A+++ +R +P
Sbjct: 519 WTGIRWVVTVARDVAGQTIAEAEAERRDNLVTDARADPDVAAILAAFPGAKIIDVRIAVP 578
Query: 164 N 164
+
Sbjct: 579 D 579
>gi|163737243|ref|ZP_02144661.1| DNA polymerase III, subunits gamma and tau [Phaeobacter
gallaeciensis BS107]
gi|161389847|gb|EDQ14198.1| DNA polymerase III, subunits gamma and tau [Phaeobacter
gallaeciensis BS107]
Length = 606
Score = 42.4 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 15/116 (12%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ +IEL D ++E ++ +L +VS++ GR+ + + P+D L +L+ WT
Sbjct: 469 EHVIELIRVKRDGLLLEYVKTYLRLVSYQPGRITIQPTDDAPKDLAARLGQQLQTWTHAR 528
Query: 125 WEIRFSLGRCCEYF-EIDSD--------------IKAVRTIFPTAQVVCIRTIPNL 165
W I + E E D+ ++AV FP A++ IRT +L
Sbjct: 529 WVISLANEGGGETITERDNAAENALRAEASTHPMVQAVLESFPKAKIRHIRTAEDL 584
>gi|163740347|ref|ZP_02147741.1| DNA polymerase III subunits gamma and tau [Phaeobacter
gallaeciensis 2.10]
gi|161386205|gb|EDQ10580.1| DNA polymerase III subunits gamma and tau [Phaeobacter
gallaeciensis 2.10]
Length = 611
Score = 42.4 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 15/116 (12%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ +IEL D ++E ++ +L +VS++ GR+ + + P+D L +L+ WT
Sbjct: 474 EHVIELIRVKRDGLLLEYVKTYLRLVSYQPGRITIQPTDDAPKDLAARLGQQLQTWTHAR 533
Query: 125 WEIRFSL---GRCCEYFEIDSD------------IKAVRTIFPTAQVVCIRTIPNL 165
W I + G E ++ ++AV FP A++ IRT +L
Sbjct: 534 WVISLANEGGGETITERENAAENALRAEASTHPMVQAVLESFPKAKIRHIRTAEDL 589
>gi|297182623|gb|ADI18781.1| DNA polymerase III, gamma/tau subunits [uncultured SAR11 cluster
bacterium HF4000_37C10]
Length = 547
Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 38/64 (59%)
Query: 67 LIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWE 126
LI+L + + + L+ +++++ F ++++SF + + + F+ NL+ KL WTG+ W
Sbjct: 436 LIKLASEKKEIHLKHNLENYVNLIQFSERKIDISFNENLDKSFVRNLSEKLLEWTGKRWV 495
Query: 127 IRFS 130
I S
Sbjct: 496 ITLS 499
>gi|163757647|ref|ZP_02164736.1| DNA polymerase III subunits gamma and tau [Hoeflea phototrophica
DFL-43]
gi|162285149|gb|EDQ35431.1| DNA polymerase III subunits gamma and tau [Hoeflea phototrophica
DFL-43]
Length = 639
Score = 42.0 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ ++ L EK+ D M ++ + +V E RLE+S + L KLK+WTG +
Sbjct: 496 EDMVVLAEKHRDIAMKVQIRTGVRLVRIEQTRLEISLAPDASPSLPGELVKKLKDWTGAN 555
Query: 125 WEIRFS 130
W + S
Sbjct: 556 WSVALS 561
>gi|85717152|ref|ZP_01048111.1| DNA polymerase III subunits gamma and tau [Nitrobacter sp. Nb-311A]
gi|85696043|gb|EAQ33942.1| DNA polymerase III subunits gamma and tau [Nitrobacter sp. Nb-311A]
Length = 827
Score = 42.0 bits (97), Expect = 0.031, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 66 QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDW 125
+L+ L + D + L+ + +V E GRLEV+ + + +LA KL+ WTG W
Sbjct: 694 ELVALAGEKRDLIIKAALEADMRLVRMEDGRLEVALERSAARTLVNDLARKLEQWTGRRW 753
Query: 126 EIRFS------------LGRCCEY---FEIDSDIKAVRTIFPTAQVVCIR 160
+ S L + E E D ++ V FP A+VV +R
Sbjct: 754 TVIVSNEPGQPTLRSQALLQKSERERAAEADPRVQDVLARFPGAKVVEVR 803
>gi|323136736|ref|ZP_08071817.1| DNA polymerase III, subunits gamma and tau [Methylocystis sp. ATCC
49242]
gi|322398053|gb|EFY00574.1| DNA polymerase III, subunits gamma and tau [Methylocystis sp. ATCC
49242]
Length = 610
Score = 41.6 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 15/110 (13%)
Query: 67 LIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWE 126
L+ L E+ D ++ L+ + +V FE GR+E D L KL+ WT E W
Sbjct: 478 LVALAEEKRDIRLKLALESDVRLVRFEHGRIEFELAPGGSRDLASALMQKLQAWTNERWM 537
Query: 127 IRFSLGRCCEY---------------FEIDSDIKAVRTIFPTAQVVCIRT 161
+ E D + V FP AQ+V +R+
Sbjct: 538 VSIVAAGGAPTIKERRDAQERERRSGLEADPVVAGVLARFPGAQIVAVRS 587
>gi|255263195|ref|ZP_05342537.1| DNA polymerase III subunits gamma and tau [Thalassiobium sp. R2A62]
gi|255105530|gb|EET48204.1| DNA polymerase III subunits gamma and tau [Thalassiobium sp. R2A62]
Length = 585
Score = 41.6 bits (96), Expect = 0.039, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 66 QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDW 125
++EL + D K++ ++ + +VS+ GR+E + P+D + L ++L+ +TG W
Sbjct: 449 HVVELIRTHRDVKLLVEVETGVKLVSYSPGRIEFAPSDAAPQDLAQRLGSRLQAYTGNRW 508
Query: 126 EIRFSLGRCCEYF-----EIDSDIK----------AVRTIFPTAQVVCIRT 161
I E D+ +K AV T FP +++ IRT
Sbjct: 509 AISVVADGGAPTIADLRDEADNALKAEAAAHPMVQAVLTAFPKSKITEIRT 559
>gi|27383227|ref|NP_774756.1| DNA polymerase III subunits gamma and tau [Bradyrhizobium japonicum
USDA 110]
gi|27356401|dbj|BAC53381.1| DNA polymerase III tau subunit [Bradyrhizobium japonicum USDA 110]
Length = 613
Score = 41.2 bits (95), Expect = 0.042, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 15/112 (13%)
Query: 66 QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDW 125
QL+ L + D L+ + +V FE GRLEV+ I LA K + WTG W
Sbjct: 474 QLVALAGQKRDIMTKAALEADMRLVRFEEGRLEVALEPNASRTMITELARKFELWTGRRW 533
Query: 126 EIRFSLGRC---------------CEYFEIDSDIKAVRTIFPTAQVVCIRTI 162
+ S + E D ++ V + FP ++VV +R +
Sbjct: 534 TVIVSNEQGQPTLRSVNQAAKQEHARTAEADPRVQEVLSRFPGSKVVEVRRL 585
>gi|315497912|ref|YP_004086716.1| DNA polymerase iii, subunits gamma and tau [Asticcacaulis
excentricus CB 48]
gi|315415924|gb|ADU12565.1| DNA polymerase III, subunits gamma and tau [Asticcacaulis
excentricus CB 48]
Length = 603
Score = 41.2 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 15/117 (12%)
Query: 62 NYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWT 121
N ++ L + D + ++R++ ++SF G + P D + L+ +LK WT
Sbjct: 462 NTFDDVLALIAEKRDIGLRVDVERYVKLISFRQGAITFEPAPHTPIDLVRKLSARLKEWT 521
Query: 122 GEDWEIRFSLGRCCEYF---EI------------DSDIKAVRTIFPTAQVVCIRTIP 163
G+ W I G E + EI D I + T FP +++ R P
Sbjct: 522 GQRWLIATEGGGGAETYREREIREKAEALQRLRNDPFISGLMTAFPGVEILSFRPKP 578
>gi|158421766|ref|YP_001523058.1| ATPase [Azorhizobium caulinodans ORS 571]
gi|158328655|dbj|BAF86140.1| ATPase [Azorhizobium caulinodans ORS 571]
Length = 613
Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 15/109 (13%)
Query: 67 LIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWE 126
++ L + D + ++ +V FE GR+E+S + +++L+ KL WTG W
Sbjct: 474 VVALATQKRDLMLKHAVESHARLVHFEEGRIEISMAPGGDPNLVQDLSRKLAEWTGRRWL 533
Query: 127 IRFS----------LGRCC-----EYFEIDSDIKAVRTIFPTAQVVCIR 160
+ S + R + + + AV + FP AQ+V +R
Sbjct: 534 VSLSSKQGEATIAEIARAAREEREDGIRAEPLVAAVLSQFPGAQIVDVR 582
>gi|118590526|ref|ZP_01547928.1| DNA polymerase III subunits gamma and tau [Stappia aggregata IAM
12614]
gi|118436989|gb|EAV43628.1| DNA polymerase III subunits gamma and tau [Stappia aggregata IAM
12614]
Length = 640
Score = 40.8 bits (94), Expect = 0.061, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 15/93 (16%)
Query: 83 LQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFS--LGRCCEYFEI 140
+QR + +V FE G++E+ + P D KL WTG+ W + S GR + E
Sbjct: 517 IQRLMRLVKFEPGKIEIQPTDDAPADIAGEFGRKLTEWTGQRWFVVVSRNQGRPTIHEEQ 576
Query: 141 D-------SDIKAVRTI------FPTAQVVCIR 160
+ SD K+ T+ FP A+VV ++
Sbjct: 577 EANQQQLLSDAKSHPTVAALLAQFPGARVVDVK 609
>gi|167041262|gb|ABZ06018.1| putative ATPase family associated with various cellular activities
(AAA) [uncultured marine microorganism HF4000_005D21]
gi|167045767|gb|ABZ10413.1| putative ATPase family associated with various cellular activities
(AAA) [uncultured marine bacterium HF4000_APKG3108]
Length = 555
Score = 40.4 bits (93), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 67 LIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWE 126
LI+L + + + L+ L+++ F ++++SF + + ++F+ NL+ KL WTG+ W
Sbjct: 444 LIKLASEKKEIHLKHDLENNLNLIQFSERKIDMSFNENLDKNFVRNLSAKLFEWTGKRWV 503
Query: 127 IRFSLGRCCEYFEIDSDIKAVR 148
I S + F S++K ++
Sbjct: 504 ITLSKEKGQRTF---SELKNIK 522
>gi|154246111|ref|YP_001417069.1| DNA polymerase III, subunits gamma and tau [Xanthobacter
autotrophicus Py2]
gi|154160196|gb|ABS67412.1| DNA polymerase III, subunits gamma and tau [Xanthobacter
autotrophicus Py2]
Length = 622
Score = 40.4 bits (93), Expect = 0.089, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 15/101 (14%)
Query: 76 DYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLG--- 132
D + ++ L V E GR+EV+ + P I++L+ KL +WTG W + S
Sbjct: 492 DLALKHAVETSLRPVHVEEGRIEVALVPGAPASVIQDLSRKLSDWTGRRWLVSVSSQAGG 551
Query: 133 ------RCCEYFEIDSDIK------AVRTIFPTAQVVCIRT 161
E + IK AV FP A+VV +RT
Sbjct: 552 PTLAEENAAVKAEREEGIKAHPLVAAVLARFPGAEVVDVRT 592
>gi|170742371|ref|YP_001771026.1| DNA polymerase III subunits gamma and tau [Methylobacterium sp.
4-46]
gi|168196645|gb|ACA18592.1| DNA polymerase III, subunits gamma and tau [Methylobacterium sp.
4-46]
Length = 605
Score = 40.0 bits (92), Expect = 0.099, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 31/66 (46%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ ++ L E D + L+R +H+V FE GR+E + +LA L WTG
Sbjct: 469 EDVVALAEAKRDIGLKAALERDVHLVRFEEGRIEFRLAEAGRPSLANDLARALDLWTGRR 528
Query: 125 WEIRFS 130
W + S
Sbjct: 529 WVVALS 534
>gi|254462224|ref|ZP_05075640.1| DNA polymerase III, gamma and tau subunit [Rhodobacterales
bacterium HTCC2083]
gi|206678813|gb|EDZ43300.1| DNA polymerase III, gamma and tau subunit [Rhodobacteraceae
bacterium HTCC2083]
Length = 583
Score = 40.0 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 15/111 (13%)
Query: 66 QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDW 125
+++L N D K++ ++ + + +++ GR+E + P D + L KL+ WTG W
Sbjct: 447 HVVDLIRANRDVKLLVDVEGGIRLANYQPGRIEFVAHPKAPNDLAQRLGQKLQLWTGNRW 506
Query: 126 EI-------RFSLGRCCEYFEIDSD--------IKAVRTIFPTAQVVCIRT 161
+ R ++ + +I ++AV FP+A+++ I+T
Sbjct: 507 AVTLVNQGGRETIAEKRDAVDIALKEEAASHPLLQAVFEAFPSARIIDIKT 557
>gi|75674567|ref|YP_316988.1| DNA polymerase III subunits gamma and tau [Nitrobacter winogradskyi
Nb-255]
gi|74419437|gb|ABA03636.1| DNA polymerase III gamma/tau subunits [Nitrobacter winogradskyi
Nb-255]
Length = 611
Score = 40.0 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 15/110 (13%)
Query: 66 QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDW 125
+L+ L + D + L+ + +V E GRLEV+ + + +L KL+ WTG W
Sbjct: 478 ELVALAGEKRDLIIKAALEADIRLVRIENGRLEVALERSAARTLVNDLGRKLEQWTGRRW 537
Query: 126 EIRFS------------LGRCCEY---FEIDSDIKAVRTIFPTAQVVCIR 160
+ S L + E E D ++ V FP A+VV +R
Sbjct: 538 TVIVSNEPGQPTLRSQALLQKSERERAAEADPRVQDVLARFPGAKVVEVR 587
>gi|114568986|ref|YP_755666.1| DNA polymerase III subunits gamma and tau [Maricaulis maris MCS10]
gi|114339448|gb|ABI64728.1| DNA polymerase III, tau subunit [Maricaulis maris MCS10]
Length = 606
Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 18/111 (16%)
Query: 67 LIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWE 126
L++L + D + ++R++ F+ G +++ P D + L+ +L WTGE W
Sbjct: 479 LMDLLREKRDIGLQSDVERYVRPAVFKPGSFTFQPIEDAPRDLAQRLSRRLLEWTGERWM 538
Query: 127 I-----------------RFSLGRCCEYFEIDSDIKAVRTIFPTAQVVCIR 160
I R R E D + V +FP A++V IR
Sbjct: 539 ILADGSLEGGETWSERRLRLKAER-LEAARHDPAVTEVMRLFPGAEIVKIR 588
>gi|90426319|ref|YP_534689.1| DNA polymerase III subunits gamma and tau [Rhodopseudomonas
palustris BisB18]
gi|90108333|gb|ABD90370.1| DNA polymerase III, subunits gamma and tau [Rhodopseudomonas
palustris BisB18]
Length = 618
Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 15/116 (12%)
Query: 62 NYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWT 121
N +L+ L + D L+ + +V E GRLE++ + I +L+ KL+ WT
Sbjct: 475 NSFPELVALAAEKRDVMTRVALEADVRLVRIEDGRLELAMERSAARTLINDLSRKLEQWT 534
Query: 122 GEDWEIRFS------------LGRCCEY---FEIDSDIKAVRTIFPTAQVVCIRTI 162
G W + S L + E E D ++ V FP A+V+ +R +
Sbjct: 535 GRRWTVIVSNEEGQPTLRSQALAQQSERERAAEADPRVQEVLARFPGAKVLEVRRL 590
>gi|126739558|ref|ZP_01755250.1| DNA polymerase III subunits gamma and tau [Roseobacter sp.
SK209-2-6]
gi|126719204|gb|EBA15914.1| DNA polymerase III subunits gamma and tau [Roseobacter sp.
SK209-2-6]
Length = 603
Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ ++EL D ++E ++ +L +V+++ GR+ + + P+D L +L+ WT
Sbjct: 466 EHVVELIRVKRDGLLLEYVKTYLRLVAYQPGRITIQPTNDAPKDLAARLGQQLQGWTHAR 525
Query: 125 WEIRFSL---GRCCEYFEIDSD------------IKAVRTIFPTAQVVCIRT 161
W I G E ++ ++AV FP A++ IRT
Sbjct: 526 WIISLENEGGGETITERENAAENALRDKAKAHPLVQAVLESFPKAKITKIRT 577
>gi|84516011|ref|ZP_01003372.1| DNA polymerase III subunits gamma and tau [Loktanella vestfoldensis
SKA53]
gi|84510453|gb|EAQ06909.1| DNA polymerase III subunits gamma and tau [Loktanella vestfoldensis
SKA53]
Length = 572
Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 56 SACTPD---NYTK--QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFI 110
+A PD +Y + +++L + D K++ ++ L +VS++ GR+ V + D +
Sbjct: 421 TALAPDALQHYARFEDVVQLIRHHRDVKLLVEVETGLQLVSYQPGRITVQPTADAAPDLV 480
Query: 111 ENLATKLKNWTGEDWEI 127
L +L+ WTG W I
Sbjct: 481 GRLGARLQLWTGNRWTI 497
>gi|46204299|ref|ZP_00050200.2| COG2812: DNA polymerase III, gamma/tau subunits [Magnetospirillum
magnetotacticum MS-1]
Length = 451
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 67 LIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWE 126
++ E D + L+R +H+V FE GR+E + +LA L WTG W
Sbjct: 300 VVAQAEAARDIALKVALERDVHLVRFEEGRIEFRLAQGGRATLANDLARALDAWTGRRWV 359
Query: 127 IRFS 130
+ S
Sbjct: 360 VAVS 363
>gi|197116410|ref|YP_002136837.1| response receiver sensor histidine kinase [Geobacter bemidjiensis
Bem]
gi|197085770|gb|ACH37041.1| response receiver sensor histidine kinase, PAS domain-containing
protein [Geobacter bemidjiensis Bem]
Length = 511
Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 54 RLSACTPDN--YTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIE 111
+L TPD Y IE CE+ MVEM+ L + FE G+++++F +E P I
Sbjct: 287 KLGPVTPDQSEYLNAAIESCEE-----MVEMIDTLLGIHKFEAGKMKLNFREEDPSLLIN 341
Query: 112 NLATKLK 118
TK +
Sbjct: 342 RSVTKFQ 348
>gi|319898354|ref|YP_004158447.1| DNA polymerase III gamma and tau subunit [Bartonella clarridgeiae
73]
gi|319402318|emb|CBI75857.1| DNA polymerase III gamma and tau subunit [Bartonella clarridgeiae
73]
Length = 634
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Query: 62 NYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWT 121
N + +++L E++++ +++ F+H VSFE + + +E P ++ L WT
Sbjct: 497 NSLQDIVDLAEQHNEIHFKLLIKEFVHPVSFEPEHITLRLAEEAPRSLERDIKKMLHQWT 556
Query: 122 GEDWEIRF------------SLGRCCEYF---EIDSDIKAVRTIFPTAQVVCIR 160
G+ I S+ F + D DI + FP A+++ IR
Sbjct: 557 GKHCTITLVNEGGEPTLQEKSIAIQKSLFSDAQTDPDIAKILNNFPGAKIIDIR 610
>gi|115526801|ref|YP_783712.1| DNA polymerase III subunits gamma and tau [Rhodopseudomonas
palustris BisA53]
gi|115520748|gb|ABJ08732.1| DNA polymerase III, subunits gamma and tau [Rhodopseudomonas
palustris BisA53]
Length = 629
Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 15/112 (13%)
Query: 66 QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDW 125
+L+ L + D + L+ + +V E GR+E++ + I +L+ KL+ WTG W
Sbjct: 492 ELVALAAEKRDLMVRAALEADVRLVRIEDGRIELALERTASRTLINDLSRKLEQWTGRRW 551
Query: 126 EIRFSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVVCIRTI 162
+ S E D ++ V FP A+V+ +R +
Sbjct: 552 AVIVSNAEGQPTLRSQALQQQTARERAAESDPRVQEVLARFPGAKVIEVRRL 603
>gi|321472924|gb|EFX83893.1| hypothetical protein DAPPUDRAFT_315316 [Daphnia pulex]
Length = 556
Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 65 KQLIE-LCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGE 123
K LIE + K +LQ + +V+FE GRLE+S P D + L LK++TG
Sbjct: 441 KGLIEAVIAKREGLLQTHLLQDIV-LVTFEQGRLEISLKPGAPTDLPKRLQAFLKDYTGT 499
Query: 124 DWEI 127
W++
Sbjct: 500 SWKV 503
>gi|220924618|ref|YP_002499920.1| DNA polymerase III subunits gamma and tau [Methylobacterium
nodulans ORS 2060]
gi|219949225|gb|ACL59617.1| DNA polymerase III, subunits gamma and tau [Methylobacterium
nodulans ORS 2060]
Length = 605
Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 15/111 (13%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ ++ L + D + L+R +H+V FE GR+E + +LA L WTG
Sbjct: 474 EDVVALADARRDIGLKAALERDVHLVRFEDGRIEFRLAEGGRATLANDLARALDLWTGRR 533
Query: 125 WEIRFSLGRCCEYF------EIDSD---------IKAVRTIFPTAQVVCIR 160
W + S EI+S ++AV FP AQ++ +R
Sbjct: 534 WVVALSKETGAPTLAARTRAEIESRHQGAAAHPLVQAVLRGFPGAQIIDVR 584
>gi|77464283|ref|YP_353787.1| DNA polymerase III subunits gamma and tau [Rhodobacter sphaeroides
2.4.1]
gi|77388701|gb|ABA79886.1| DNA polymerase III tau and gamma subunits [Rhodobacter sphaeroides
2.4.1]
Length = 582
Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 15/118 (12%)
Query: 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKN 119
P +Q++EL + D K++ ++ + +V F GR+E + D L+ +L+
Sbjct: 443 PCQSFEQMVELIRQKRDMKLLYEVETGVRLVRFAPGRIEFEPAPDAAPDLAARLSQRLQG 502
Query: 120 WTGEDWEIRFSLGRCCEYFEIDSD---------------IKAVRTIFPTAQVVCIRTI 162
WTG W I G + D ++AV FP A++ IR +
Sbjct: 503 WTGGRWGISVVSGGGAPTLAEERDKGRLEEEARALENPLVQAVMAAFPGARIAEIRRL 560
>gi|221640167|ref|YP_002526429.1| DNA polymerase III subunits gamma and tau [Rhodobacter sphaeroides
KD131]
gi|221160948|gb|ACM01928.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sphaeroides
KD131]
Length = 582
Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 15/113 (13%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+Q++EL + D K++ ++ + +V F GR+E + D L+ +L+ WTG
Sbjct: 448 EQMVELIRQKRDMKLLYEVETGVRLVRFAPGRIEFEPAPDAAPDLAARLSQRLQGWTGGR 507
Query: 125 WEIRFSLGRCCEYFEIDSD---------------IKAVRTIFPTAQVVCIRTI 162
W I G + D ++AV FP A++ IR +
Sbjct: 508 WGISVVSGGGAPTLAEERDKGRLEEEARALENPLVQAVMAAFPGARIAEIRRL 560
>gi|192289049|ref|YP_001989654.1| DNA polymerase III subunits gamma and tau [Rhodopseudomonas
palustris TIE-1]
gi|192282798|gb|ACE99178.1| DNA polymerase III, subunits gamma and tau [Rhodopseudomonas
palustris TIE-1]
Length = 623
Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 66 QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDW 125
QL+ L + D L+ + +V E GRLE++ I +L KL+ WTG W
Sbjct: 491 QLVALASEKRDVMTRLALEADVRLVRIEDGRLELALEPSASRSLINDLGRKLEQWTGRRW 550
Query: 126 EIRFS 130
+ S
Sbjct: 551 TVIVS 555
>gi|39933692|ref|NP_945968.1| DNA polymerase III subunits gamma and tau [Rhodopseudomonas
palustris CGA009]
gi|39647538|emb|CAE26059.1| possible DNA polymerase III tau subunit [Rhodopseudomonas palustris
CGA009]
Length = 623
Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 66 QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDW 125
QL+ L + D L+ + +V E GRLE++ I +L KL+ WTG W
Sbjct: 491 QLVALASEKRDVMTRLALEADVRLVRIEDGRLELALEPSASRSLINDLGRKLEQWTGRRW 550
Query: 126 EIRFS 130
+ S
Sbjct: 551 TVIVS 555
>gi|126463125|ref|YP_001044239.1| DNA polymerase III subunits gamma and tau [Rhodobacter sphaeroides
ATCC 17029]
gi|126104789|gb|ABN77467.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sphaeroides
ATCC 17029]
Length = 580
Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 15/118 (12%)
Query: 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKN 119
P +Q++EL + D K++ ++ + +V F GR+E + D L+ +L+
Sbjct: 441 PCQSFEQMVELIRQKRDMKLLYEVETGVRLVRFAPGRIEFEPAPDAAPDLAARLSQRLQG 500
Query: 120 WTGEDWEIRFSLGRCCEYFEIDSD---------------IKAVRTIFPTAQVVCIRTI 162
WTG W I G + D ++AV FP A++ IR +
Sbjct: 501 WTGGRWGISVVSGGGAPTLAEERDKGRLEEEARALENPLVQAVMAAFPGARIAEIRRL 558
>gi|91974569|ref|YP_567228.1| DNA polymerase III subunits gamma and tau [Rhodopseudomonas
palustris BisB5]
gi|91681025|gb|ABE37327.1| DNA polymerase III, subunits gamma and tau [Rhodopseudomonas
palustris BisB5]
Length = 624
Score = 38.5 bits (88), Expect = 0.27, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 66 QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDW 125
QL+ L + D L+ + +V + GRLE++ + I +L KL+ WTG W
Sbjct: 490 QLVALASEKRDVMTRMALEADVRLVRIDDGRLELALERTASRSLINDLGRKLEQWTGRRW 549
Query: 126 EIRFS 130
+ S
Sbjct: 550 TVIVS 554
>gi|86747794|ref|YP_484290.1| DNA polymerase III subunits gamma and tau [Rhodopseudomonas
palustris HaA2]
gi|86570822|gb|ABD05379.1| DNA polymerase III, subunits gamma and tau [Rhodopseudomonas
palustris HaA2]
Length = 627
Score = 38.5 bits (88), Expect = 0.27, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 66 QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDW 125
QL+ L + D L+ + +V E GRLE++ + I L KL+ WTG W
Sbjct: 492 QLVALASEKRDVMTRMALEADVRLVRIEDGRLELALERTASRSLIGELGRKLEQWTGRRW 551
Query: 126 EIRFS 130
+ S
Sbjct: 552 TVIVS 556
>gi|89056367|ref|YP_511818.1| DNA polymerase III subunits gamma and tau [Jannaschia sp. CCS1]
gi|88865916|gb|ABD56793.1| DNA polymerase III subunits gamma and tau [Jannaschia sp. CCS1]
Length = 584
Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ ++ L E D K++ ++ L +VS+ GRLEV P D I L L TG
Sbjct: 444 ESVVALVEGARDIKLLIEVKTCLRLVSYAPGRLEVEVTDTAPRDLIPRLGRMLHTATGAR 503
Query: 125 WEI 127
W I
Sbjct: 504 WGI 506
>gi|217976468|ref|YP_002360615.1| DNA polymerase III, subunits gamma and tau [Methylocella silvestris
BL2]
gi|217501844|gb|ACK49253.1| DNA polymerase III, subunits gamma and tau [Methylocella silvestris
BL2]
Length = 628
Score = 38.1 bits (87), Expect = 0.35, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 15/110 (13%)
Query: 67 LIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWE 126
++ L K+ D +M L+R + +V F+ G +E + L KL+ WTG W
Sbjct: 489 IVALAAKHRDIQMKLALERDVRLVRFQDGSIEFAPGPHASPQLAPMLMRKLQEWTGRRWL 548
Query: 127 IRFS--LGR-------------CCEYFEIDSDIKAVRTIFPTAQVVCIRT 161
+ S GR E D ++ +FP A++V +RT
Sbjct: 549 VAVSREAGRPSLKDEADAKAEAAMEGVRADPLVRRALELFPGAEIVAVRT 598
>gi|253698665|ref|YP_003019854.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
M21]
gi|251773515|gb|ACT16096.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
M21]
Length = 509
Score = 38.1 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 53 NRLSACTPDN--YTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFI 110
++L TPD Y IE CE+ MVEM+ L + FE G+++++F +E P I
Sbjct: 286 SKLGPVTPDQSEYLNAAIESCEE-----MVEMIDTLLGIHKFEAGKMKLNFREEDPVLLI 340
Query: 111 ENLATKLK 118
A K +
Sbjct: 341 NRSAAKFQ 348
>gi|294678278|ref|YP_003578893.1| DNA polymerase III subunit gamma/tau [Rhodobacter capsulatus SB
1003]
gi|294477098|gb|ADE86486.1| DNA polymerase III, gamma/tau subunit [Rhodobacter capsulatus SB
1003]
Length = 589
Score = 38.1 bits (87), Expect = 0.42, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ ++ L + D K++ +++ + +V + GR+E P D + LA +L+ WTG
Sbjct: 451 EDVVALIGRMRDVKLLVEVEKGVRLVHYAPGRIEFEPAPGAPRDLAQTLAQRLQGWTGAR 510
Query: 125 WEI 127
W +
Sbjct: 511 WGV 513
>gi|188581065|ref|YP_001924510.1| DNA polymerase III, subunits gamma and tau [Methylobacterium populi
BJ001]
gi|179344563|gb|ACB79975.1| DNA polymerase III, subunits gamma and tau [Methylobacterium populi
BJ001]
Length = 623
Score = 38.1 bits (87), Expect = 0.42, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 15/111 (13%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ ++ E D + L+R +H+V FE GR+E + +LA L WTG
Sbjct: 482 EDVVAQAEAARDIALKVALERDVHLVRFEEGRIEFRLAPGGRQSLANDLARALDAWTGRR 541
Query: 125 WEIRFSLGRCCEYFEIDSD---------------IKAVRTIFPTAQVVCIR 160
W + S + +S ++ V + FP AQ+V +R
Sbjct: 542 WVVAVSKEQGAPTLAENSRAAEETRHQNAAAHPLVREVLSRFPGAQIVDVR 592
>gi|126725863|ref|ZP_01741705.1| DNA polymerase III subunits gamma and tau [Rhodobacterales
bacterium HTCC2150]
gi|126705067|gb|EBA04158.1| DNA polymerase III subunits gamma and tau [Rhodobacterales
bacterium HTCC2150]
Length = 596
Score = 38.1 bits (87), Expect = 0.43, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 34/63 (53%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ ++EL + D K++ ++ + + ++ GR+E + P D + L+ +L+ WTG
Sbjct: 459 EDVVELIRLHRDVKLLVEVETGIRLANYSPGRIEFEASEHAPADLAQRLSARLQAWTGVR 518
Query: 125 WEI 127
W +
Sbjct: 519 WGV 521
>gi|316932084|ref|YP_004107066.1| DNA polymerase III subunits gamma and tau [Rhodopseudomonas
palustris DX-1]
gi|315599798|gb|ADU42333.1| DNA polymerase III, subunits gamma and tau [Rhodopseudomonas
palustris DX-1]
Length = 624
Score = 37.7 bits (86), Expect = 0.49, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 66 QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDW 125
QL+ L + D L+ + +V E GRLE++ I L KL+ WTG W
Sbjct: 492 QLVALASEKRDVMTRLALEADVRLVRIEDGRLELALEPTASRSLINELGRKLEQWTGRRW 551
Query: 126 EIRFS 130
+ S
Sbjct: 552 TVIVS 556
>gi|254470770|ref|ZP_05084173.1| DNA polymerase III, tau subunit protein [Pseudovibrio sp. JE062]
gi|211959912|gb|EEA95109.1| DNA polymerase III, tau subunit protein [Pseudovibrio sp. JE062]
Length = 640
Score = 37.7 bits (86), Expect = 0.49, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 15/112 (13%)
Query: 66 QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDW 125
++ +L + D + ++R L +V+F+ GR+EV + D L KL WTG W
Sbjct: 500 EVAQLAGRMKDIPVKVSVERALRLVNFQPGRIEVQPTEIATPDAAGELGRKLTEWTGRRW 559
Query: 126 EIRFS--LGRCCEYFEID-----------SDIKAVRTI--FPTAQVVCIRTI 162
+ S GR + E + SD + V+ I FP A+VV +R +
Sbjct: 560 IVAVSREQGRPTLHEEKEANQRQLVSDAHSDPEVVKLISAFPGAKVVDVRIL 611
>gi|146276573|ref|YP_001166732.1| DNA polymerase III subunits gamma and tau [Rhodobacter sphaeroides
ATCC 17025]
gi|145554814|gb|ABP69427.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sphaeroides
ATCC 17025]
Length = 582
Score = 37.7 bits (86), Expect = 0.51, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 15/112 (13%)
Query: 66 QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDW 125
Q++E+ + D K++ ++ + +V F GR+E + D L+ +L+ WTG W
Sbjct: 449 QMVEMIRQKRDMKLLYEVETGVRLVRFAPGRIEFEPAPDAAPDLAARLSQRLQGWTGARW 508
Query: 126 EIRFSLGRCCEYFEIDSD---------------IKAVRTIFPTAQVVCIRTI 162
+ G + D ++AV FP A++ IR +
Sbjct: 509 GVSVVSGGGAPTLAEERDKGRLEEEARALENPLVQAVMAAFPGARIAEIRKL 560
>gi|182677255|ref|YP_001831401.1| DNA polymerase III, subunits gamma and tau [Beijerinckia indica
subsp. indica ATCC 9039]
gi|182633138|gb|ACB93912.1| DNA polymerase III, subunits gamma and tau [Beijerinckia indica
subsp. indica ATCC 9039]
Length = 651
Score = 37.4 bits (85), Expect = 0.70, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 21/117 (17%)
Query: 67 LIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWE 126
L+ L + D ++ L+R + +V FE G +E + + L +L+ WTG W
Sbjct: 502 LVALAGEKRDIQLKTALERDVRLVRFEEGTIEFALAPGASPQLAQTLMRRLQEWTGTRWM 561
Query: 127 I-----------RFSLGRCCEY--------FEIDSDIKAVRTIFPTAQVVCIRTIPN 164
+ +L E E D ++ + FP AQ++ +R PN
Sbjct: 562 VAIASETSGGAAALTLKEQAEKQAAAVRQGIEADPLVRKALSQFPGAQIIAVR--PN 616
>gi|49475044|ref|YP_033085.1| DNA polymerase III subunits gamma and tau [Bartonella henselae str.
Houston-1]
gi|49237849|emb|CAF27044.1| DNA polymerase III subunit tau [Bartonella henselae str. Houston-1]
Length = 646
Score = 37.0 bits (84), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 15/109 (13%)
Query: 67 LIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWE 126
+++L E++ + ++ F+H VSFE G + + + P ++ L WT +
Sbjct: 508 IVKLAEQHDEITFKLLITEFVHPVSFEPGHIILRIAENAPHSLKNDIKKMLSQWTEKRLT 567
Query: 127 IRF------------SLGRCCEYF---EIDSDIKAVRTIFPTAQVVCIR 160
I F S+ F E D DI + FP A++V IR
Sbjct: 568 ITFVNEGGGPTLQEESMAIQKTLFSNAEADPDIAKILYHFPEAKIVDIR 616
>gi|302381707|ref|YP_003817530.1| DNA polymerase III subunits gamma/tau [Brevundimonas subvibrioides
ATCC 15264]
gi|302192335|gb|ADK99906.1| DNA polymerase III, subunits gamma and tau [Brevundimonas
subvibrioides ATCC 15264]
Length = 612
Score = 37.0 bits (84), Expect = 0.94, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 60 PDNYT-KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLK 118
PD T + ++ L + + + +QR++ VSF+ G L ++ P + L+++LK
Sbjct: 476 PDPQTFEAVVALIGERREIALQMDVQRYVRPVSFKPGALTYEPVEGAPANLATRLSSRLK 535
Query: 119 NWTGEDW 125
WTG W
Sbjct: 536 EWTGRPW 542
>gi|300024235|ref|YP_003756846.1| DNA polymerase III subunits gamma and tau [Hyphomicrobium
denitrificans ATCC 51888]
gi|299526056|gb|ADJ24525.1| DNA polymerase III, subunits gamma and tau [Hyphomicrobium
denitrificans ATCC 51888]
Length = 617
Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 17/114 (14%)
Query: 67 LIELCEKNHDYKMVEMLQRFLHVVSFEL--GRLEVSFLKEIPEDFIENLATKLKNWTGED 124
++ L + D K+ L+ + +V F+ G ++V L + P + +L KL WTG
Sbjct: 490 VVTLVGEKRDVKLKMHLENDVSLVKFDAVAGSIDVFLLPDAPPELANDLREKLNLWTGRR 549
Query: 125 WEIRFS----------LGRCCEYFEIDS-----DIKAVRTIFPTAQVVCIRTIP 163
W + S + R E E++ ++AV FP A++ +R +P
Sbjct: 550 WVVVLSKDAGQRPIGVVRREREAAELEQLKQHPAMRAVLQAFPDAKIAEVRRLP 603
>gi|110800481|ref|YP_696718.1| GTP-binding protein LepA [Clostridium perfringens ATCC 13124]
gi|168208740|ref|ZP_02634365.1| GTP-binding protein LepA [Clostridium perfringens B str. ATCC 3626]
gi|168212925|ref|ZP_02638550.1| GTP-binding protein LepA [Clostridium perfringens CPE str. F4969]
gi|168215665|ref|ZP_02641290.1| GTP-binding protein LepA [Clostridium perfringens NCTC 8239]
gi|119371341|sp|Q0TNS2|LEPA_CLOP1 RecName: Full=Elongation factor 4; Short=EF-4; AltName:
Full=Ribosomal back-translocase LepA
gi|110675128|gb|ABG84115.1| GTP-binding protein LepA [Clostridium perfringens ATCC 13124]
gi|170713149|gb|EDT25331.1| GTP-binding protein LepA [Clostridium perfringens B str. ATCC 3626]
gi|170715556|gb|EDT27738.1| GTP-binding protein LepA [Clostridium perfringens CPE str. F4969]
gi|182382166|gb|EDT79645.1| GTP-binding protein LepA [Clostridium perfringens NCTC 8239]
Length = 600
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Query: 39 PLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEM--LQRFLHVVSFELGR 96
P+ E E+ V + S TP +YT ++ELC+ K ++M L+ V+ +E+
Sbjct: 396 PMTEIAYMEEPVV--KASIITPTDYTGAVMELCQDRRG-KFIDMQYLEETRVVIHYEIP- 451
Query: 97 LEVSFLKEIPEDFIENLATKLKNWTGEDWEIR 128
L EI DF + L +K + + D+E++
Sbjct: 452 -----LNEIVYDFFDTLKSKTRGYASLDYELK 478
>gi|18311020|ref|NP_562954.1| GTP-binding protein LepA [Clostridium perfringens str. 13]
gi|110801855|ref|YP_699319.1| GTP-binding protein LepA [Clostridium perfringens SM101]
gi|168204723|ref|ZP_02630728.1| GTP-binding protein LepA [Clostridium perfringens E str. JGS1987]
gi|169343542|ref|ZP_02864541.1| GTP-binding protein LepA [Clostridium perfringens C str. JGS1495]
gi|24211910|sp|Q8XIS6|LEPA_CLOPE RecName: Full=Elongation factor 4; Short=EF-4; AltName:
Full=Ribosomal back-translocase LepA
gi|119371342|sp|Q0SRD8|LEPA_CLOPS RecName: Full=Elongation factor 4; Short=EF-4; AltName:
Full=Ribosomal back-translocase LepA
gi|18145702|dbj|BAB81744.1| GTP-binding protein [Clostridium perfringens str. 13]
gi|110682356|gb|ABG85726.1| GTP-binding protein LepA [Clostridium perfringens SM101]
gi|169298102|gb|EDS80192.1| GTP-binding protein LepA [Clostridium perfringens C str. JGS1495]
gi|170663584|gb|EDT16267.1| GTP-binding protein LepA [Clostridium perfringens E str. JGS1987]
Length = 600
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Query: 39 PLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEM--LQRFLHVVSFELGR 96
P+ E E+ V + S TP +YT ++ELC+ K ++M L+ V+ +E+
Sbjct: 396 PMTEIAYMEEPVV--KASIITPTDYTGAVMELCQDRRG-KFIDMQYLEETRVVIHYEIP- 451
Query: 97 LEVSFLKEIPEDFIENLATKLKNWTGEDWEIR 128
L EI DF + L +K + + D+E++
Sbjct: 452 -----LNEIVYDFFDTLKSKTRGYASLDYELK 478
>gi|182626892|ref|ZP_02954626.1| GTP-binding protein LepA [Clostridium perfringens D str. JGS1721]
gi|177907742|gb|EDT70354.1| GTP-binding protein LepA [Clostridium perfringens D str. JGS1721]
Length = 600
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Query: 39 PLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEM--LQRFLHVVSFELGR 96
P+ E E+ V + S TP +YT ++ELC+ K ++M L+ V+ +E+
Sbjct: 396 PMTEIAYMEEPVV--KASIITPTDYTGAVMELCQDRRG-KFIDMQYLEETRVVIHYEIP- 451
Query: 97 LEVSFLKEIPEDFIENLATKLKNWTGEDWEIR 128
L EI DF + L +K + + D+E++
Sbjct: 452 -----LNEIVYDFFDTLKSKTRGYASLDYELK 478
>gi|328541815|ref|YP_004301924.1| DNA polymerase III subunits gamma and tau [Polymorphum gilvum
SL003B-26A1]
gi|326411567|gb|ADZ68630.1| DNA polymerase III subunits gamma and tau [Polymorphum gilvum
SL003B-26A1]
Length = 673
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 15/106 (14%)
Query: 70 LCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRF 129
L + D + ++R + +V F+ GR+E + D L KL WTG W +
Sbjct: 542 LASEKRDIPLKVAIERQMRLVRFDPGRIEFQPTPDAGADLAGELGRKLTEWTGMRWIVSV 601
Query: 130 S--LGRCCEYFEIDSD-------------IKAVRTIFPTAQVVCIR 160
S GR + E +++ + A+ T FP A+VV +R
Sbjct: 602 SRTQGRPTIHEEREANQAQLLSDARSHPTVAALLTEFPGARVVDVR 647
>gi|163795453|ref|ZP_02189420.1| DNA polymerase III, gamma/tau subunits [alpha proteobacterium
BAL199]
gi|159179439|gb|EDP63970.1| DNA polymerase III, gamma/tau subunits [alpha proteobacterium
BAL199]
Length = 610
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
K L EL + + L +H VS+ GR+++ F +A L WTG+
Sbjct: 465 KALAELFHARGEPVLSAQLSGSVHCVSYAPGRIDIRPQNGTDPRFAAQIAAHLGRWTGQP 524
Query: 125 WEIRFS 130
W++R S
Sbjct: 525 WDVRIS 530
>gi|310815375|ref|YP_003963339.1| DNA polymerase III, subunits gamma and tau [Ketogulonicigenium
vulgare Y25]
gi|308754110|gb|ADO42039.1| DNA polymerase III, subunits gamma and tau [Ketogulonicigenium
vulgare Y25]
Length = 583
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 33/72 (45%)
Query: 56 SACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLAT 115
S P + ++EL D +++ ++ + + ++ GR+E D LAT
Sbjct: 438 SLLAPYATFEAVVELIRDQRDMRLLVEVEGTMRIARYQPGRIEFQPTPNAAPDLAGRLAT 497
Query: 116 KLKNWTGEDWEI 127
+L+NWT W +
Sbjct: 498 RLQNWTHARWAV 509
>gi|254560987|ref|YP_003068082.1| DNA polymerase III, tau and subunit gammas [Methylobacterium
extorquens DM4]
gi|254268265|emb|CAX24200.1| DNA polymerase III, tau and gamma subunits [Methylobacterium
extorquens DM4]
Length = 626
Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 15/111 (13%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ ++ E D + L+R +H+V FE GR+E + +LA L WTG
Sbjct: 486 EDVVAQAEAARDIALKVALERDVHLVRFEEGRIEFRLAPGGRQSLPTDLARALDAWTGRR 545
Query: 125 WEIRFSLGRCCEYFEIDSD---------------IKAVRTIFPTAQVVCIR 160
W + S + ++ ++ V + FP AQ+V +R
Sbjct: 546 WLVALSKEQGAPTLAENTRAAEETRHQNAAAHPLVREVLSRFPGAQIVDVR 596
>gi|240138441|ref|YP_002962913.1| DNA polymerase III, tau and gamma subunits [Methylobacterium
extorquens AM1]
gi|240008410|gb|ACS39636.1| DNA polymerase III, tau and gamma subunits [Methylobacterium
extorquens AM1]
Length = 626
Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 15/111 (13%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ ++ E D + L+R +H+V FE GR+E + +LA L WTG
Sbjct: 486 EDVVAQAEAARDIALKVALERDVHLVRFEEGRIEFRLAPGGRQSLPTDLARALDAWTGRR 545
Query: 125 WEIRFSLGRCCEYFEIDSD---------------IKAVRTIFPTAQVVCIR 160
W + S + ++ ++ V + FP AQ+V +R
Sbjct: 546 WLVALSKEQGAPTLAENTRAAEETRHQNAAAHPLVREVLSRFPGAQIVDVR 596
>gi|218530155|ref|YP_002420971.1| DNA polymerase III subunits gamma and tau [Methylobacterium
chloromethanicum CM4]
gi|218522458|gb|ACK83043.1| DNA polymerase III, subunits gamma and tau [Methylobacterium
chloromethanicum CM4]
Length = 626
Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 15/111 (13%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ ++ E D + L+R +H+V FE GR+E + +LA L WTG
Sbjct: 486 EDVVAQAEAARDIALKVALERDVHLVRFEEGRIEFRLAPGGRQSLPTDLARALDAWTGRR 545
Query: 125 WEIRFSLGRCCEYFEIDSD---------------IKAVRTIFPTAQVVCIR 160
W + S + ++ ++ V + FP AQ+V +R
Sbjct: 546 WLVALSKEQGAPTLAENTRAAEETRHQNAAAHPLVREVLSRFPGAQIVDVR 596
>gi|163851288|ref|YP_001639331.1| DNA polymerase III, subunits gamma and tau [Methylobacterium
extorquens PA1]
gi|163662893|gb|ABY30260.1| DNA polymerase III, subunits gamma and tau [Methylobacterium
extorquens PA1]
Length = 628
Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 15/111 (13%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ ++ E D + L+R +H+V FE GR+E + +LA L WTG
Sbjct: 488 EDVVAQAEAARDIALKVALERDVHLVRFEEGRIEFRLAPGGRQSLPTDLARALDAWTGRR 547
Query: 125 WEIRFSLGRCCEYFEIDSD---------------IKAVRTIFPTAQVVCIR 160
W + S + ++ ++ V + FP AQ+V +R
Sbjct: 548 WLVALSKEQGAPTLAENTRAAEETRHQNAAAHPLVREVLSRFPGAQIVDVR 598
>gi|229220849|ref|YP_287921.2| DNA polymerase III PolC [Mycoplasma hyopneumoniae 7448]
gi|144575503|gb|AAZ53898.2| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae 7448]
Length = 1469
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 24/127 (18%)
Query: 41 AEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYK----MVEMLQRFLHVVSFELGR 96
AE I EK V+N L +C D +I L EKN D+K ++E +++ + E
Sbjct: 1210 AEKLILEKNHVINELISCRDD----IMIYLLEKNIDHKVAFNIMENVRKGKGLTDQEKEL 1265
Query: 97 LEVSFLKEIPEDFIENL-------------ATKLKNWTGEDWEIRFSLGRCCEYFEIDSD 143
LE LK++P +IE+L A +K W +++ L YF I D
Sbjct: 1266 LE---LKKVPSWYIESLQKIGYLFPKAHAVAYAMKAWKIAYFKLYHPLAFYSSYFSIRPD 1322
Query: 144 IKAVRTI 150
+K + T+
Sbjct: 1323 VKDLETL 1329
>gi|312601484|gb|ADQ90739.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 168]
Length = 1447
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 24/134 (17%)
Query: 41 AEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYK----MVEMLQRFLHVVSFELGR 96
AE I EK+ V+N L +C D +I L +KN D++ ++E +++ + E
Sbjct: 1188 AEKLILEKKHVINELISCRDD----IMIYLLQKNIDHQVAFNIMENVRKGKGLTDQEKEL 1243
Query: 97 LEVSFLKEIPEDFIENL-------------ATKLKNWTGEDWEIRFSLGRCCEYFEIDSD 143
LE LK++P +IE+L A +K W +++ L YF I D
Sbjct: 1244 LE---LKKVPSWYIESLQKIGYLFPKAHAVAYAMKAWKIAYFKLYHPLAFYSSYFSIRPD 1300
Query: 144 IKAVRTIFPTAQVV 157
+K + T+ A+ +
Sbjct: 1301 VKDLETLIQPAEKI 1314
>gi|145489721|ref|XP_001430862.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124397963|emb|CAK63464.1| unnamed protein product [Paramecium tetraurelia]
Length = 1183
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 22 AIGENALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVE 81
+I +N +P NI+ + +A ++E+ D+ N+L Y KQ +E+ KN DY + E
Sbjct: 226 SIKKNEIP-NINDLQTLVIAYILLSEQLDISNKLG------YAKQALEIIGKNPDYSIFE 278
Query: 82 MLQRFL 87
+ +RF+
Sbjct: 279 LKKRFI 284
>gi|126731114|ref|ZP_01746922.1| DNA polymerase III subunits gamma and tau [Sagittula stellata E-37]
gi|126708416|gb|EBA07474.1| DNA polymerase III subunits gamma and tau [Sagittula stellata E-37]
Length = 587
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 19/114 (16%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ +++L N D K++ ++ L + +++ GR+E + L L+ WTG
Sbjct: 450 EHVLDLIRANRDVKLLVEVEGGLRLAAYQPGRIEFTPTDTADPQLASKLGAALQRWTGNR 509
Query: 125 WEIRFSLGRCCEYFEIDSD-----------------IKAVRTIFPTAQVVCIRT 161
W + G CE + ++A FP A + IRT
Sbjct: 510 WAVTLVNG--CEAPTVTERRDAADRALKAEAAQHPLVQAALAAFPKATITSIRT 561
>gi|144898666|emb|CAM75530.1| DNA-directed DNA polymerase [Magnetospirillum gryphiswaldense
MSR-1]
Length = 586
Score = 35.4 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 32/66 (48%)
Query: 66 QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDW 125
+++ L + + + L+ ++ V FE GR+E K P+D ++ L WTG W
Sbjct: 451 EVVALFSEKREGVLAVHLRNQVNPVKFEAGRIEFRPHKSAPQDLAPRVSRLLSEWTGRRW 510
Query: 126 EIRFSL 131
+ +L
Sbjct: 511 TVTVNL 516
>gi|309775639|ref|ZP_07670639.1| GTP-binding protein LepA [Erysipelotrichaceae bacterium 3_1_53]
gi|308916733|gb|EFP62473.1| GTP-binding protein LepA [Erysipelotrichaceae bacterium 3_1_53]
Length = 602
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 13/78 (16%)
Query: 54 RLSACTPDNYTKQLIELCE-KNHDYKMVEMLQRFLHVVSFELGRLEVSF---LKEIPEDF 109
R S TP++Y ++ELC+ K +YK +V + GR+ V + L EI DF
Sbjct: 407 RASIMTPNDYVGPIMELCQRKRGNYK---------DMVYIDEGRMNVIYELPLGEIVFDF 457
Query: 110 IENLATKLKNWTGEDWEI 127
+ L + K + D+E+
Sbjct: 458 FDKLKSCTKGYASLDYEL 475
>gi|229828894|ref|ZP_04454963.1| hypothetical protein GCWU000342_00979 [Shuttleworthia satelles DSM
14600]
gi|229792057|gb|EEP28171.1| hypothetical protein GCWU000342_00979 [Shuttleworthia satelles DSM
14600]
Length = 245
Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 20 SFAIGENAL-PRNISSDECFPLAEAGITEKQDVLNRLSACTP----DNYTKQLIE----- 69
+F IG+ + P +IS D P+A +D R++ CT D+YT + ++
Sbjct: 84 TFTIGDMEICPMHISHDAADPVAYTMRQRTEDGDKRVAVCTDLGAYDDYTIERLQGMDAM 143
Query: 70 LCEKNHDYKMVEM 82
L E NHD KM+E+
Sbjct: 144 LLEANHDVKMLEV 156
>gi|313888911|ref|ZP_07822571.1| GTP-binding protein LepA [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845084|gb|EFR32485.1| GTP-binding protein LepA [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 603
Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 59 TPDNYTKQLIELCEKNHD-YKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKL 117
TP +Y Q++ELC+ +K +E L+ ++++ + L E+ DF + L +K
Sbjct: 414 TPTDYVGQVMELCQNRRGVFKNMEYLEETRALITYHMP------LNEVIYDFFDALKSKT 467
Query: 118 KNWTGEDWEI 127
+ + D+E+
Sbjct: 468 RGYASYDYEL 477
>gi|313901030|ref|ZP_07834518.1| GTP-binding protein LepA [Clostridium sp. HGF2]
gi|312953988|gb|EFR35668.1| GTP-binding protein LepA [Clostridium sp. HGF2]
Length = 602
Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 13/78 (16%)
Query: 54 RLSACTPDNYTKQLIELCE-KNHDYKMVEMLQRFLHVVSFELGRLEVSF---LKEIPEDF 109
R S TP++Y ++ELC+ K +YK +V + GR+ V + L EI DF
Sbjct: 407 RASIMTPNDYVGPIMELCQRKRGNYK---------DMVYIDEGRMNVIYELPLGEIVFDF 457
Query: 110 IENLATKLKNWTGEDWEI 127
+ L + K + D+E+
Sbjct: 458 FDKLKSCTKGYASLDYEL 475
>gi|145498608|ref|XP_001435291.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402422|emb|CAK67894.1| unnamed protein product [Paramecium tetraurelia]
Length = 1215
Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 31 NISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLH 88
NIS + A ++E+ D+ NRL Y+KQ +E+ K+ DY + E+ +RF++
Sbjct: 247 NISDMQTLVYAYILLSEQLDIANRLG------YSKQAVEIIGKSSDYSIYELKKRFIN 298
>gi|188589078|ref|YP_001920249.1| GTP-binding protein LepA [Clostridium botulinum E3 str. Alaska E43]
gi|251779181|ref|ZP_04822101.1| GTP-binding protein LepA [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|188499359|gb|ACD52495.1| GTP-binding protein LepA [Clostridium botulinum E3 str. Alaska E43]
gi|243083496|gb|EES49386.1| GTP-binding protein LepA [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 600
Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 39 PLAEAGITEKQDVLNRLSACTPDNYTKQLIELC-EKNHDYKMVEMLQRFLHVVSFELGRL 97
P+ E E+ V + S TP +Y ++ELC E+ Y +E ++ V+++++
Sbjct: 396 PMTEIDFMEEPVV--KASIITPTDYVGAVMELCQERRGIYIDMEYIEETRAVITYDMP-- 451
Query: 98 EVSFLKEIPEDFIENLATKLKNWTGEDWEIR 128
L EI DF + L ++ + + D+E +
Sbjct: 452 ----LNEIVYDFFDTLKSRTRGYASLDYEFK 478
>gi|187933987|ref|YP_001885088.1| GTP-binding protein LepA [Clostridium botulinum B str. Eklund 17B]
gi|187722140|gb|ACD23361.1| GTP-binding protein LepA [Clostridium botulinum B str. Eklund 17B]
Length = 600
Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 39 PLAEAGITEKQDVLNRLSACTPDNYTKQLIELC-EKNHDYKMVEMLQRFLHVVSFELGRL 97
P+ E E+ V + S TP +Y ++ELC E+ Y +E ++ V+++++
Sbjct: 396 PMTEIDFMEEPVV--KASIITPTDYVGAVMELCQERRGIYIDMEYIEETRAVITYDMP-- 451
Query: 98 EVSFLKEIPEDFIENLATKLKNWTGEDWEIR 128
L EI DF + L ++ + + D+E +
Sbjct: 452 ----LNEIVYDFFDTLKSRTRGYASLDYEFK 478
>gi|309807219|ref|ZP_07701191.1| putative GTP-binding protein LepA [Lactobacillus iners LactinV
03V1-b]
gi|308166357|gb|EFO68564.1| putative GTP-binding protein LepA [Lactobacillus iners LactinV
03V1-b]
Length = 355
Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 12/92 (13%)
Query: 40 LAEAGITEKQDV---LNRLSACTPDNYTKQLIELCEKNH-DYKMVEMLQRFLHVVSFELG 95
L +AG E QDV + P+++ ++ELC+K H +++ ++ L +F V +++
Sbjct: 142 LPDAG--EYQDVQEPFVKAEIMVPNDFVGAVMELCQKKHGEFQTMDYLDKFRVNVIYKMP 199
Query: 96 RLEVSFLKEIPEDFIENLATKLKNWTGEDWEI 127
L +I DF ++L + K + D+EI
Sbjct: 200 ------LADIIYDFFDDLKSFTKGYASLDYEI 225
>gi|315653451|ref|ZP_07906372.1| GTP-binding protein LepA [Lactobacillus iners ATCC 55195]
gi|315489142|gb|EFU78783.1| GTP-binding protein LepA [Lactobacillus iners ATCC 55195]
Length = 616
Score = 34.7 bits (78), Expect = 4.0, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 12/92 (13%)
Query: 40 LAEAGITEKQDVLN---RLSACTPDNYTKQLIELCEKNH-DYKMVEMLQRFLHVVSFELG 95
L +AG E QDV + P+++ ++ELC+K H +++ ++ L +F V +++
Sbjct: 403 LPDAG--EYQDVQEPFVKAEIMVPNDFVGAVMELCQKKHGEFQTMDYLDKFRVNVIYKMP 460
Query: 96 RLEVSFLKEIPEDFIENLATKLKNWTGEDWEI 127
L +I DF ++L + K + D+EI
Sbjct: 461 ------LADIIYDFFDDLKSFTKGYASLDYEI 486
>gi|312871413|ref|ZP_07731508.1| GTP-binding protein LepA [Lactobacillus iners LEAF 3008A-a]
gi|311093066|gb|EFQ51415.1| GTP-binding protein LepA [Lactobacillus iners LEAF 3008A-a]
Length = 616
Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 12/92 (13%)
Query: 40 LAEAGITEKQDVLN---RLSACTPDNYTKQLIELCEKNH-DYKMVEMLQRFLHVVSFELG 95
L +AG E QDV + P+++ ++ELC+K H +++ ++ L +F V +++
Sbjct: 403 LPDAG--EYQDVQEPFVKAEIMVPNDFVGAVMELCQKKHGEFQTMDYLDKFRVNVIYKMP 460
Query: 96 RLEVSFLKEIPEDFIENLATKLKNWTGEDWEI 127
L +I DF ++L + K + D+EI
Sbjct: 461 ------LADIIYDFFDDLKSFTKGYASLDYEI 486
>gi|309805333|ref|ZP_07699383.1| GTP-binding protein LepA [Lactobacillus iners LactinV 09V1-c]
gi|309807686|ref|ZP_07701625.1| GTP-binding protein LepA [Lactobacillus iners LactinV 01V1-a]
gi|309809318|ref|ZP_07703187.1| GTP-binding protein LepA [Lactobacillus iners SPIN 2503V10-D]
gi|325911479|ref|ZP_08173890.1| GTP-binding protein LepA [Lactobacillus iners UPII 143-D]
gi|329921040|ref|ZP_08277565.1| GTP-binding protein LepA [Lactobacillus iners SPIN 1401G]
gi|308165333|gb|EFO67566.1| GTP-binding protein LepA [Lactobacillus iners LactinV 09V1-c]
gi|308169060|gb|EFO71139.1| GTP-binding protein LepA [Lactobacillus iners LactinV 01V1-a]
gi|308170431|gb|EFO72455.1| GTP-binding protein LepA [Lactobacillus iners SPIN 2503V10-D]
gi|325476679|gb|EGC79834.1| GTP-binding protein LepA [Lactobacillus iners UPII 143-D]
gi|328935110|gb|EGG31595.1| GTP-binding protein LepA [Lactobacillus iners SPIN 1401G]
Length = 612
Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 12/92 (13%)
Query: 40 LAEAGITEKQDVLN---RLSACTPDNYTKQLIELCEKNH-DYKMVEMLQRFLHVVSFELG 95
L +AG E QDV + P+++ ++ELC+K H +++ ++ L +F V +++
Sbjct: 399 LPDAG--EYQDVQEPFVKAEIMVPNDFVGAVMELCQKKHGEFQTMDYLDKFRVNVIYKMP 456
Query: 96 RLEVSFLKEIPEDFIENLATKLKNWTGEDWEI 127
L +I DF ++L + K + D+EI
Sbjct: 457 ------LADIIYDFFDDLKSFTKGYASLDYEI 482
>gi|259500713|ref|ZP_05743615.1| GTP-binding protein LepA [Lactobacillus iners DSM 13335]
gi|302191403|ref|ZP_07267657.1| GTP-binding protein LepA [Lactobacillus iners AB-1]
gi|309803968|ref|ZP_07698051.1| GTP-binding protein LepA [Lactobacillus iners LactinV 11V1-d]
gi|312872258|ref|ZP_07732328.1| GTP-binding protein LepA [Lactobacillus iners LEAF 2062A-h1]
gi|312873975|ref|ZP_07734011.1| GTP-binding protein LepA [Lactobacillus iners LEAF 2052A-d]
gi|312875503|ref|ZP_07735506.1| GTP-binding protein LepA [Lactobacillus iners LEAF 2053A-b]
gi|325912865|ref|ZP_08175243.1| GTP-binding protein LepA [Lactobacillus iners UPII 60-B]
gi|259168097|gb|EEW52592.1| GTP-binding protein LepA [Lactobacillus iners DSM 13335]
gi|308163970|gb|EFO66234.1| GTP-binding protein LepA [Lactobacillus iners LactinV 11V1-d]
gi|311089014|gb|EFQ47455.1| GTP-binding protein LepA [Lactobacillus iners LEAF 2053A-b]
gi|311090524|gb|EFQ48932.1| GTP-binding protein LepA [Lactobacillus iners LEAF 2052A-d]
gi|311092081|gb|EFQ50455.1| GTP-binding protein LepA [Lactobacillus iners LEAF 2062A-h1]
gi|325477858|gb|EGC80992.1| GTP-binding protein LepA [Lactobacillus iners UPII 60-B]
Length = 612
Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 12/92 (13%)
Query: 40 LAEAGITEKQDVLN---RLSACTPDNYTKQLIELCEKNH-DYKMVEMLQRFLHVVSFELG 95
L +AG E QDV + P+++ ++ELC+K H +++ ++ L +F V +++
Sbjct: 399 LPDAG--EYQDVQEPFVKAEIMVPNDFVGAVMELCQKKHGEFQTMDYLDKFRVNVIYKMP 456
Query: 96 RLEVSFLKEIPEDFIENLATKLKNWTGEDWEI 127
L +I DF ++L + K + D+EI
Sbjct: 457 ------LADIIYDFFDDLKSFTKGYASLDYEI 482
>gi|242084270|ref|XP_002442560.1| hypothetical protein SORBIDRAFT_08g021950 [Sorghum bicolor]
gi|241943253|gb|EES16398.1| hypothetical protein SORBIDRAFT_08g021950 [Sorghum bicolor]
Length = 1041
Score = 34.7 bits (78), Expect = 4.6, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 97 LEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYFEIDSDIKAVRTIFPTAQV 156
LEV LK++ +EN +L++ G DWE+ SL C + F + D + +FP + V
Sbjct: 374 LEVGNLKDLEVLTVEN--NQLEDKWGSDWELIASLSNCSKLFYLSLDSNNFQGMFPPSIV 431
Query: 157 VCIRTIPNL 165
T+ L
Sbjct: 432 NLSNTMQKL 440
>gi|71893884|ref|YP_279330.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae J]
gi|71852011|gb|AAZ44619.1| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae J]
Length = 1468
Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 24/127 (18%)
Query: 41 AEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYK----MVEMLQRFLHVVSFELGR 96
AE I EK+ V+N L +C D +I L +KN D++ ++E +++ + E
Sbjct: 1209 AEKLILEKKHVINELISCRDD----IMIYLLQKNIDHQVAFNIMENVRKGKGLTDQEKEL 1264
Query: 97 LEVSFLKEIPEDFIENL-------------ATKLKNWTGEDWEIRFSLGRCCEYFEIDSD 143
LE LK++P +IE+L A +K W +++ L YF I D
Sbjct: 1265 LE---LKKVPSWYIESLQKIGYLFPKAHAVAYAMKAWKIAYFKLYHPLAFYSSYFSIRPD 1321
Query: 144 IKAVRTI 150
+K + T+
Sbjct: 1322 VKDLETL 1328
>gi|54020575|ref|YP_116058.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae 232]
gi|53987748|gb|AAV27949.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 232]
Length = 1469
Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 24/127 (18%)
Query: 41 AEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYK----MVEMLQRFLHVVSFELGR 96
AE I EK+ V+N L +C D +I L +KN D++ ++E +++ + E
Sbjct: 1210 AEKLILEKKHVINELISCRDD----IMIYLLQKNIDHQVAFNIMENVRKGKGLTDQEKEL 1265
Query: 97 LEVSFLKEIPEDFIENL-------------ATKLKNWTGEDWEIRFSLGRCCEYFEIDSD 143
LE LK++P +IE+L A +K W +++ L YF I D
Sbjct: 1266 LE---LKKVPSWYIESLQKIGYLFPKAHAVAYAMKAWKIAYFKLYHPLAFYSSYFSIRPD 1322
Query: 144 IKAVRTI 150
+K + T+
Sbjct: 1323 VKDLETL 1329
>gi|331270016|ref|YP_004396508.1| GTP-binding protein LepA [Clostridium botulinum BKT015925]
gi|329126566|gb|AEB76511.1| GTP-binding protein LepA [Clostridium botulinum BKT015925]
Length = 606
Score = 34.7 bits (78), Expect = 4.8, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 45 ITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSF--- 101
I E ++ + + S TP +Y ++ELC+ F+ + E R+ V++
Sbjct: 406 IEEMEEPVVKASIITPSDYVGAVMELCQNKRG--------TFIDMEYIETTRVVVNYYIP 457
Query: 102 LKEIPEDFIENLATKLKNWTGEDWEI 127
L EI DF + L +K K + D+E+
Sbjct: 458 LNEIIYDFFDMLKSKTKGYASLDYEL 483
>gi|240274344|gb|EER37861.1| GTP-binding protein [Ajellomyces capsulatus H143]
Length = 710
Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Query: 32 ISSDECFP---LAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNH-DYKMVEMLQRFL 87
I++ FP A +TE Q+ + P+ Y ++IELCE N + K +E
Sbjct: 495 ITNPALFPEEDTLRAKVTELQEPFVLATLTFPEEYLGRVIELCESNRGEQKSLEFFTSTQ 554
Query: 88 HVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWE 126
++ +EL L ++ +DF L K + D+E
Sbjct: 555 VILKYELP------LAQLVDDFFGKLKGSTKGYASLDYE 587
>gi|325091898|gb|EGC45208.1| GTP-binding protein [Ajellomyces capsulatus H88]
Length = 710
Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Query: 32 ISSDECFP---LAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNH-DYKMVEMLQRFL 87
I++ FP A +TE Q+ + P+ Y ++IELCE N + K +E
Sbjct: 495 ITNPALFPEEDTLRAKVTELQEPFVLATLTFPEEYLGRVIELCESNRGEQKSLEFFTSTQ 554
Query: 88 HVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWE 126
++ +EL L ++ +DF L K + D+E
Sbjct: 555 VILKYELP------LAQLVDDFFGKLKGSTKGYASLDYE 587
>gi|154270756|ref|XP_001536232.1| GTP-binding protein GUF1 [Ajellomyces capsulatus NAm1]
gi|150409806|gb|EDN05246.1| GTP-binding protein GUF1 [Ajellomyces capsulatus NAm1]
Length = 698
Score = 33.9 bits (76), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Query: 32 ISSDECFP---LAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNH-DYKMVEMLQRFL 87
I++ FP A +TE Q+ + P+ Y ++IELCE N + K +E
Sbjct: 483 ITNPALFPEEDTLRAKVTELQEPFVLATLTFPEEYLGRVIELCESNRGEQKSLEFFTSTQ 542
Query: 88 HVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWE 126
++ +EL L ++ +DF L K + D+E
Sbjct: 543 VILKYELP------LAQLVDDFFGKLKGSTKGYASLDYE 575
>gi|188585805|ref|YP_001917350.1| GTP-binding protein LepA [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350492|gb|ACB84762.1| GTP-binding protein LepA [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 599
Score = 33.9 bits (76), Expect = 7.3, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 54 RLSACTPDNYTKQLIELCE-KNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIEN 112
R + P +Y ++ELCE K +Y+ +E L ++ ++L E+ F DF +
Sbjct: 407 RANFMVPQDYIGPVMELCEEKRGEYETLEYLDSLRVLLKYKLPLSEIVF------DFFDL 460
Query: 113 LATKLKNWTGEDWEI 127
L +K + + D+EI
Sbjct: 461 LKSKTRGYASFDYEI 475
>gi|237734632|ref|ZP_04565113.1| GTP-binding protein lepA [Mollicutes bacterium D7]
gi|229382452|gb|EEO32543.1| GTP-binding protein lepA [Coprobacillus sp. D7]
Length = 602
Score = 33.9 bits (76), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 54 RLSACTPDNYTKQLIELCE-KNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIEN 112
+ S TP+ Y ++ELC+ K +Y+ +E + V +E+ L EI DF +
Sbjct: 409 KASIMTPNEYVGVIMELCQSKRGEYQDIEYIDDTRRNVIYEIP------LSEIVYDFFDK 462
Query: 113 LATKLKNWTGEDWEI 127
L + K + D+E+
Sbjct: 463 LKSGTKGYASLDYEL 477
>gi|167756927|ref|ZP_02429054.1| hypothetical protein CLORAM_02476 [Clostridium ramosum DSM 1402]
gi|167703102|gb|EDS17681.1| hypothetical protein CLORAM_02476 [Clostridium ramosum DSM 1402]
Length = 606
Score = 33.9 bits (76), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 54 RLSACTPDNYTKQLIELCE-KNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIEN 112
+ S TP+ Y ++ELC+ K +Y+ +E + V +E+ L EI DF +
Sbjct: 413 KASIMTPNEYVGVIMELCQSKRGEYQDIEYIDDTRRNVIYEIP------LSEIVYDFFDK 466
Query: 113 LATKLKNWTGEDWEI 127
L + K + D+E+
Sbjct: 467 LKSGTKGYASLDYEL 481
>gi|317411765|sp|A6RGX9|GUF1_AJECN RecName: Full=Translation factor GUF1, mitochondrial; AltName:
Full=Elongation factor 4 homolog; Short=EF-4; AltName:
Full=GTPase GUF1; AltName: Full=Ribosomal
back-translocase; Flags: Precursor
Length = 657
Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Query: 32 ISSDECFP---LAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNH-DYKMVEMLQRFL 87
I++ FP A +TE Q+ + P+ Y ++IELCE N + K +E
Sbjct: 442 ITNPALFPEEDTLRAKVTELQEPFVLATLTFPEEYLGRVIELCESNRGEQKSLEFFTSTQ 501
Query: 88 HVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWE 126
++ +EL L ++ +DF L K + D+E
Sbjct: 502 VILKYELP------LAQLVDDFFGKLKGSTKGYASLDYE 534
>gi|317411764|sp|C6HPI9|GUF1_AJECH RecName: Full=Translation factor GUF1, mitochondrial; AltName:
Full=Elongation factor 4 homolog; Short=EF-4; AltName:
Full=GTPase GUF1; AltName: Full=Ribosomal
back-translocase; Flags: Precursor
Length = 657
Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Query: 32 ISSDECFP---LAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNH-DYKMVEMLQRFL 87
I++ FP A +TE Q+ + P+ Y ++IELCE N + K +E
Sbjct: 442 ITNPALFPEEDTLRAKVTELQEPFVLATLTFPEEYLGRVIELCESNRGEQKSLEFFTSTQ 501
Query: 88 HVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWE 126
++ +EL L ++ +DF L K + D+E
Sbjct: 502 VILKYELP------LAQLVDDFFGKLKGSTKGYASLDYE 534
>gi|304392342|ref|ZP_07374283.1| DNA polymerase III subunit tau [Ahrensia sp. R2A130]
gi|303295446|gb|EFL89805.1| DNA polymerase III subunit tau [Ahrensia sp. R2A130]
Length = 672
Score = 33.9 bits (76), Expect = 7.7, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
K +++L E D + L+ VSF G + P+D + +L +WTG
Sbjct: 502 KDMLDLAEAKRDIRFKMQLRNNFSEVSFAPGHIVFRPTGNAPKDLARTITDRLLDWTGTR 561
Query: 125 WEI 127
W +
Sbjct: 562 WTV 564
>gi|317411688|sp|C0NZL9|GUF1_AJECG RecName: Full=Translation factor GUF1, mitochondrial; AltName:
Full=Elongation factor 4 homolog; Short=EF-4; AltName:
Full=GTPase GUF1; AltName: Full=Ribosomal
back-translocase; Flags: Precursor
gi|225554973|gb|EEH03267.1| GTP-binding protein GUF1 [Ajellomyces capsulatus G186AR]
Length = 657
Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Query: 32 ISSDECFP---LAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNH-DYKMVEMLQRFL 87
I++ FP A +TE Q+ + P+ Y ++IELCE N + K +E
Sbjct: 442 ITNPALFPEEDTLRAKVTELQEPFVLATLTFPEEYLGRVIELCESNRGEQKSLEFFTSTQ 501
Query: 88 HVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWE 126
++ +EL L ++ +DF L K + D+E
Sbjct: 502 VILKYELP------LAQLVDDFFGKLKGSTKGYASLDYE 534
>gi|260772994|ref|ZP_05881910.1| transposase [Vibrio metschnikovii CIP 69.14]
gi|260612133|gb|EEX37336.1| transposase [Vibrio metschnikovii CIP 69.14]
Length = 324
Score = 33.9 bits (76), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 16 LNVSSFAIGENA--LPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEK 73
+++ ++AI N L NI+ D+ L + ++ +++L KQL L E+
Sbjct: 65 IDICAYAIMSNHYHLVVNINQDKVLNLTHHQVVDRWSQVHKLPVLIQRWQNKQLTSLAEQ 124
Query: 74 NHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRF 129
+++++ + L +S+ F+KE+ D I A + N TG WE RF
Sbjct: 125 TRCIELIDVWRERLSSLSW--------FMKELNYD-IACKANREDNCTGHFWESRF 171
>gi|221118739|ref|XP_002154893.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
Length = 625
Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 103 KEIPEDFIENLATKLKNWTGEDW-EIRFSLGRCCEYFEIDSDI 144
+EI E +L+T+ KNWTGE+W ++ FS C + F + ++
Sbjct: 69 REISEKLGCSLSTRYKNWTGENWSKVLFSDETCIKQFNVTNNF 111
>gi|304403918|ref|ZP_07385580.1| GTP-binding protein LepA [Paenibacillus curdlanolyticus YK9]
gi|304346896|gb|EFM12728.1| GTP-binding protein LepA [Paenibacillus curdlanolyticus YK9]
Length = 605
Score = 33.5 bits (75), Expect = 8.6, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 54 RLSACTPDNYTKQLIELCE-KNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIEN 112
+ S P++Y ++ELC+ K +Y +E L +++E+ L EI DF +
Sbjct: 412 KASVIVPNDYVGAIMELCQGKRGEYVNMEYLDTNRVTLTYEIP------LSEIVYDFFDQ 465
Query: 113 LATKLKNWTGEDWEI 127
L ++ K + D+E+
Sbjct: 466 LKSRTKGYASFDYEL 480
>gi|154496158|ref|ZP_02034854.1| hypothetical protein BACCAP_00442 [Bacteroides capillosus ATCC
29799]
gi|150274713|gb|EDN01777.1| hypothetical protein BACCAP_00442 [Bacteroides capillosus ATCC
29799]
Length = 602
Score = 33.5 bits (75), Expect = 10.0, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 45 ITEKQDVLNRLSACTPDNYTKQLIELC-EKNHDYKMVEMLQRFLHVVSFELGRLEVSFLK 103
ITE ++ ++S TP +Y ++ +C E+ ++K ++ L L + + + +
Sbjct: 400 ITEAREPYAKVSIITPPDYVGNIMPMCQERRAEFKDMQYLDTNLVEMHYSMP------IN 453
Query: 104 EIPEDFIENLATKLKNWTGEDWEI 127
EI DF + L + K + D+E+
Sbjct: 454 EIIYDFFDTLKARTKGYASLDYEL 477
Searching..................................................done
Results from round 2
>gi|315121979|ref|YP_004062468.1| DNA polymerase III subunits gamma and tau [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495381|gb|ADR51980.1| DNA polymerase III subunits gamma and tau [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 151
Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats.
Identities = 68/136 (50%), Positives = 95/136 (69%), Gaps = 1/136 (0%)
Query: 27 ALPRNISSDECFPLAEAGITEKQDVLN-RLSACTPDNYTKQLIELCEKNHDYKMVEMLQR 85
+ ++I S++ FP + + EK ++L+ LS+ D+Y ++L ELCE NHD + EM Q+
Sbjct: 12 KIQKDIPSNKSFPSGDNEVVEKPNMLSVELSSRASDDYMERLTELCENNHDDNLKEMSQK 71
Query: 86 FLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYFEIDSDIK 145
FL V FE+G LEV+ K+ PE F+ENL LKNWTG++WEIRF+L +C + F I +DI+
Sbjct: 72 FLRVFYFEIGILEVACSKDAPEGFVENLVKNLKNWTGKNWEIRFALEQCYDNFRIGADIQ 131
Query: 146 AVRTIFPTAQVVCIRT 161
AVR IFP AQVV IRT
Sbjct: 132 AVRAIFPNAQVVSIRT 147
>gi|119386357|ref|YP_917412.1| DNA polymerase III subunits gamma and tau [Paracoccus denitrificans
PD1222]
gi|119376952|gb|ABL71716.1| DNA polymerase III, subunits gamma and tau [Paracoccus
denitrificans PD1222]
Length = 592
Score = 147 bits (372), Expect = 3e-34, Method: Composition-based stats.
Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 28/172 (16%)
Query: 19 SSFAIGE---NALPRNISSDECFPLAEAGITE---KQDVLNRLSACTPDNY-----TKQL 67
+S A GE NA P + + E P A A T +QD A +PD + +
Sbjct: 386 ASAAAGEFSRNAAP-SAARGEAPPRAAAPRTPVAVRQDGSAAALAVSPDALAGFPDFESV 444
Query: 68 IELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWT-GEDWE 126
IEL + D K++ ++ L +V + GR+E + P DF + LA +L+ WT G+ W
Sbjct: 445 IELIRRMRDMKLLLDVEDHLRLVRYSPGRIEFQPTDKAPRDFAQRLAERLRGWTGGQRWA 504
Query: 127 IRFSLGRCCEYFE---------------IDSDIKAVRTIFPTAQVVCIRTIP 163
+ + + ++A+ FP A++ IR IP
Sbjct: 505 VTVTSEAGRPTISEQRAAREAEARARAMQNPTVQAIFAAFPGAKITQIRPIP 556
>gi|319405116|emb|CBI78722.1| DNA polymerase III subunit tau [Bartonella sp. AR 15-3]
Length = 633
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 34/154 (22%), Positives = 65/154 (42%), Gaps = 25/154 (16%)
Query: 23 IGENALPRNISS-DECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVE 81
+ N L NI++ P +E TE++ ++ N K +++L E++++
Sbjct: 465 VQTNQLDSNITNLSHVIPQSEMEATEQKIII---------NSLKDIVDLAEQHNEIHFKL 515
Query: 82 MLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF--- 138
+++ F+H VSFE + + F +E P ++ L WTG+ W I
Sbjct: 516 LIKEFVHPVSFEPQHITLRFAEEAPHSLERDIKKMLYQWTGKHWTITLVNEGGEPTLQEE 575
Query: 139 ------------EIDSDIKAVRTIFPTAQVVCIR 160
+ D +I + FP A+++ IR
Sbjct: 576 SIAIQKSLFSDAQTDPNIAKILNNFPGAKIIDIR 609
>gi|15963983|ref|NP_384336.1| DNA polymerase III subunits gamma and tau [Sinorhizobium meliloti
1021]
gi|15073159|emb|CAC41667.1| Putative DNA polymerase III subunit TAU protein [Sinorhizobium
meliloti 1021]
Length = 626
Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 21/154 (13%)
Query: 22 AIGENALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVE 81
A+ +A P+ IS A K + P N + +LC KN D K+
Sbjct: 449 AVPSSAPPQPISVGRIEERTVASAAAKPE------PKVPVNSIGDIADLCAKNRDIKLKT 502
Query: 82 MLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF--- 138
M++ FL +V E GRL+V+ ++ P+ + LA KLK WTG W + +S +
Sbjct: 503 MVRGFLRLVHIEPGRLDVNLPEDAPKTLLNELAVKLKEWTGIHWVVSYSREQGEPTLVEA 562
Query: 139 ------------EIDSDIKAVRTIFPTAQVVCIR 160
D D+ A+ FP A++ +R
Sbjct: 563 EQRAQEQRVNDARQDPDVAAILARFPGARITDVR 596
>gi|241207078|ref|YP_002978174.1| DNA polymerase III subunits gamma/tau [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240860968|gb|ACS58635.1| DNA polymerase III, subunits gamma and tau [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length = 625
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 59/149 (39%), Gaps = 17/149 (11%)
Query: 27 ALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRF 86
A+ R + S + ++ I K L P N ++ L + D K+ M++ F
Sbjct: 446 AMLRAVPSSQPETMSVGRIEPKP--AEALKPLVPVNSVNDIVNLATEKRDPKLKAMVRTF 503
Query: 87 LHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF-------- 138
L V E GRL+VS P + LA KLK WTG W + S
Sbjct: 504 LRPVRIEAGRLDVSLAPGAPTTLLNELAVKLKEWTGIHWIVSLSRDEGQPTLVEAEARTR 563
Query: 139 -------EIDSDIKAVRTIFPTAQVVCIR 160
D D+ A+ FP A+++ +R
Sbjct: 564 EQHVIDARQDPDVAAILAHFPGAKIIDVR 592
>gi|307306395|ref|ZP_07586139.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium meliloti
BL225C]
gi|306902237|gb|EFN32834.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium meliloti
BL225C]
Length = 626
Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 21/154 (13%)
Query: 22 AIGENALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVE 81
A+ +A P+ IS A K + P N + +LC KN D K+
Sbjct: 449 AVPSSAPPQPISVGRIEERTVASAAAKPE------PKVPVNSIGDIADLCAKNRDIKLKT 502
Query: 82 MLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF--- 138
M++ FL +V E GRL+V+ + P+ + LA KLK WTG W + +S +
Sbjct: 503 MVRGFLRLVHIEPGRLDVNLPDDAPKTLLNELAVKLKEWTGIHWVVSYSREQGEPTLVEA 562
Query: 139 ------------EIDSDIKAVRTIFPTAQVVCIR 160
D D+ A+ FP A++ +R
Sbjct: 563 EQRAQEQRVNDARQDPDVAAILARFPGARITDVR 596
>gi|307319282|ref|ZP_07598711.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium meliloti
AK83]
gi|306895118|gb|EFN25875.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium meliloti
AK83]
Length = 626
Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 21/154 (13%)
Query: 22 AIGENALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVE 81
A+ +A P+ IS A K + P N + +LC KN D K+
Sbjct: 449 AVPSSAPPQPISVGRIEERTVASAAAKPE------PKVPVNSIGDIADLCAKNRDIKLKT 502
Query: 82 MLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF--- 138
M++ FL +V E GRL+V+ + P+ + LA KLK WTG W + +S +
Sbjct: 503 MVRGFLRLVHIEPGRLDVNLPDDAPKTLLNELAVKLKEWTGIHWVVSYSREQGEPTLVEA 562
Query: 139 ------------EIDSDIKAVRTIFPTAQVVCIR 160
D D+ A+ FP A++ +R
Sbjct: 563 EQRAQEQRVNDARQDPDVAAILARFPGARITDVR 596
>gi|209551648|ref|YP_002283565.1| DNA polymerase III subunits gamma and tau [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|209537404|gb|ACI57339.1| DNA polymerase III, subunits gamma and tau [Rhizobium leguminosarum
bv. trifolii WSM2304]
Length = 626
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 35/165 (21%), Positives = 61/165 (36%), Gaps = 19/165 (11%)
Query: 15 ALNVSSFAIGENALPRNISSDECFPLAEAGITE----KQDVLNRLSACTPDNYTKQLIEL 70
A A G+ ++ P ++ + + P N ++EL
Sbjct: 428 AARAPEIAPGKPQASAPVAMLRAVPSSQPETLPVGRIETKPVETPKPLVPVNSVSDIVEL 487
Query: 71 CEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFS 130
+ D K+ +++ F+ V E GRL+V+ + P + LA KLK WTG W + S
Sbjct: 488 AAEKRDVKLKALVRNFVRPVRIEPGRLDVNLTEGAPGTLLNELAVKLKEWTGIHWIVSTS 547
Query: 131 LGRCCEY---------------FEIDSDIKAVRTIFPTAQVVCIR 160
D D+ A+ FP A+++ +R
Sbjct: 548 REEGGPTMVEAEAKAQQQRVSDARQDPDVAAILAQFPGAKIIDVR 592
>gi|86355786|ref|YP_467678.1| DNA polymerase III subunits gamma and tau [Rhizobium etli CFN 42]
gi|86279888|gb|ABC88951.1| DNA polymerase III, tau subunit protein [Rhizobium etli CFN 42]
Length = 624
Score = 140 bits (354), Expect = 4e-32, Method: Composition-based stats.
Identities = 36/149 (24%), Positives = 55/149 (36%), Gaps = 21/149 (14%)
Query: 27 ALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRF 86
A+P + EA E N ++ L + D K+ M++ F
Sbjct: 449 AVPSSQPETTPVGRIEAKPAEAP------KPLVKVNSVGDIVNLATEKRDAKLKAMVRNF 502
Query: 87 LHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF-------- 138
+ V E GRL+VS + P + LA KLK WTG W + S
Sbjct: 503 VRPVRIEPGRLDVSLTEGAPTTLLNELAVKLKEWTGIHWIVSLSRDEGQPTLVEAEARTR 562
Query: 139 -------EIDSDIKAVRTIFPTAQVVCIR 160
D D+ A+ FP A+++ +R
Sbjct: 563 EQHVIDARQDPDVAAILAHFPGAKIIDVR 591
>gi|116249901|ref|YP_765739.1| DNA polymerase III subunits gamma and tau [Rhizobium leguminosarum
bv. viciae 3841]
gi|115254549|emb|CAK05623.1| putative DNA polymerase III [Rhizobium leguminosarum bv. viciae
3841]
Length = 625
Score = 140 bits (354), Expect = 4e-32, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 58/149 (38%), Gaps = 17/149 (11%)
Query: 27 ALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRF 86
A+ R + S + +A I K P N ++ L + D K+ M++ F
Sbjct: 446 AMLRAVPSSQSETMAVGRIEPKP--AEAPKPLVPVNSVNDIVNLATEKRDPKLKAMVRTF 503
Query: 87 LHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF-------- 138
L V E GRL+VS P + LA KLK WTG W + S
Sbjct: 504 LRPVRIEAGRLDVSLAPGAPTTLLNELAVKLKEWTGIHWIVSLSRDEGQPTLVEAEARTR 563
Query: 139 -------EIDSDIKAVRTIFPTAQVVCIR 160
D D+ A+ FP A+++ +R
Sbjct: 564 EQHVIDARQDPDVAAILAHFPGAKIIDVR 592
>gi|190889795|ref|YP_001976337.1| DNA polymerase III, tau subunit protein (DNA-directed DNA
polymerase) [Rhizobium etli CIAT 652]
gi|190695074|gb|ACE89159.1| DNA polymerase III, tau subunit protein (DNA-directed DNA
polymerase) [Rhizobium etli CIAT 652]
Length = 623
Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats.
Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 19/152 (12%)
Query: 24 GENALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEML 83
G A+ R + + E P A + K P N +++L + D K+ ++
Sbjct: 442 GPTAMLRAVPNPE--PQAIGRVETKP--AEAPKPLVPVNTIGDIVDLAAEKRDVKLKALV 497
Query: 84 QRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEY------ 137
+ F+ V E GRL+V+ + P + LA KLK WTG W + S
Sbjct: 498 RNFVRPVRIEPGRLDVNLTEGAPGTLLNELAVKLKEWTGIHWIVSTSREEGGPTMVEAEA 557
Query: 138 ---------FEIDSDIKAVRTIFPTAQVVCIR 160
D D+ A+ FP A+++ +R
Sbjct: 558 KAQQQRVSDARQDPDVAAILAQFPGAKIIDVR 589
>gi|150398618|ref|YP_001329085.1| DNA polymerase III subunits gamma and tau [Sinorhizobium medicae
WSM419]
gi|150030133|gb|ABR62250.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium medicae
WSM419]
Length = 625
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 18/160 (11%)
Query: 19 SSFAIGENA-LPRNISSDECFPLAEAGITEKQDVLNRLSA--CTPDNYTKQLIELCEKNH 75
+S A G A + R + + P+ I E+ P N + +LC KN
Sbjct: 436 ASRASGNGATMLRAVPNSAAQPVEVGRIEERPIASPAAKPEPKVPVNSVGDIADLCAKNR 495
Query: 76 DYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCC 135
D K+ +++ FL +V E GRL+V+ + P+ + LA KLK WTG W + +S +
Sbjct: 496 DIKLKTLVRGFLRLVHIEPGRLDVNLPDDAPKTLLNELAVKLKEWTGIHWVVSYSREQGE 555
Query: 136 EYF---------------EIDSDIKAVRTIFPTAQVVCIR 160
D + A+ FP A++ +R
Sbjct: 556 PTLAEAEQRAQEQRVNDAREDPVVAAILARFPGARITDVR 595
>gi|222084336|ref|YP_002542865.1| DNA polymerase III [Agrobacterium radiobacter K84]
gi|221721784|gb|ACM24940.1| DNA polymerase III [Agrobacterium radiobacter K84]
Length = 625
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 63/155 (40%), Gaps = 18/155 (11%)
Query: 27 ALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRF 86
A+ R + + + A G E++ V N + EL + D K+ M++ F
Sbjct: 446 AMLRAVPNTQ-PDSAPVGRIEQKPV-EAPKPLIAINSMTDIAELAGQKRDPKLKAMVRSF 503
Query: 87 LHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEY--------- 137
+ V E GRL+VS P + LA KLK WTG W + S
Sbjct: 504 VRPVRLEPGRLDVSLTPGAPGTLLNELAVKLKEWTGIHWIVSLSRDEGEPTVVEAEANAQ 563
Query: 138 ------FEIDSDIKAVRTIFPTAQVVCIR-TIPNL 165
D D+ A+ + FP A+++ +R P++
Sbjct: 564 RQRVADARQDPDVAAILSQFPGAKIIDVRVRAPDV 598
>gi|227824061|ref|YP_002828034.1| DNA polymerase III subunits gamma and tau [Sinorhizobium fredii
NGR234]
gi|227343063|gb|ACP27281.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium fredii
NGR234]
Length = 645
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 40/172 (23%), Positives = 67/172 (38%), Gaps = 22/172 (12%)
Query: 11 KKLDALNVSSFAIGENALPRNISSDECFPLAEAGIT-------EKQDVLNRLSACTPDNY 63
+ + A +V + + + +A IT Q + P N
Sbjct: 444 QPVQARSVEAAPVQRPSANGATMLRAVPDVAAQPITVGRIEDRPAQAPAAKAEPKVPVNS 503
Query: 64 TKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGE 123
+ +LC KN D K+ +++ FL +V E GRL+V+ + P+ + LA KLK WTG
Sbjct: 504 VGDIADLCAKNRDIKLKTLVRGFLRLVHIEPGRLDVNLSDDAPKTLLNELAVKLKEWTGI 563
Query: 124 DWEIRFSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVVCIR 160
W + +S D D+ A+ FP A++ +R
Sbjct: 564 HWVVSYSREPGEPTLVEAEQRAQEQRVNDARQDPDVAAILARFPGARITDVR 615
>gi|15887450|ref|NP_353131.1| DNA polymerase III subunits gamma and tau [Agrobacterium
tumefaciens str. C58]
gi|15154965|gb|AAK85916.1| DNA polymerase III, tau subunit [Agrobacterium tumefaciens str.
C58]
Length = 624
Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 20/136 (14%)
Query: 40 LAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEV 99
A TE+ R P N + + +LC+KN D M ++ F+ +V E GRL++
Sbjct: 461 QVAAPKTEE-----RPEPKVPVNSLQDIADLCQKNRDPVMRAKVRNFVRLVRLEPGRLDM 515
Query: 100 SFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF---------------EIDSDI 144
+ P L KLK WTG W + S + D D+
Sbjct: 516 RLGEGAPGSLPGELGVKLKEWTGIHWIVSLSKEQGEPTLVEAEGNARDARLVDARQDPDV 575
Query: 145 KAVRTIFPTAQVVCIR 160
A+ FP A++ +R
Sbjct: 576 AAILAQFPGAKITDVR 591
>gi|149916416|ref|ZP_01904935.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. AzwK-3b]
gi|149809686|gb|EDM69540.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. AzwK-3b]
Length = 596
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 60/161 (37%), Gaps = 15/161 (9%)
Query: 20 SFAIGENALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKM 79
+ A +P P A A ++ + +A + ++EL + D K+
Sbjct: 414 ASAGQSTTIPAAAHPGPSAPGARAPSGQQALAVAAETALAHYPTFEHVVELIRAHRDVKL 473
Query: 80 VEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYFE 139
+ ++ + +VS+ GR+ P+D + L L+ WTG W I +
Sbjct: 474 LVEVETNMRLVSYRPGRITFQPTGNAPQDLSQRLGAALQRWTGNRWGISLVNEGGADTIA 533
Query: 140 I---------------DSDIKAVRTIFPTAQVVCIRTIPNL 165
++AV + FP AQ+ IRT ++
Sbjct: 534 EQRDAAETALRHEVSRHPLVQAVLSAFPKAQITSIRTEADI 574
>gi|325291540|ref|YP_004277404.1| DNA polymerase III subunits gamma and tau [Agrobacterium sp. H13-3]
gi|325059393|gb|ADY63084.1| DNA polymerase III subunits gamma and tau [Agrobacterium sp. H13-3]
Length = 625
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 53/136 (38%), Gaps = 20/136 (14%)
Query: 40 LAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEV 99
A TE+ R P N + + +LC+KN D M ++ F+ +V E GRL++
Sbjct: 461 QVAAPKTEE-----RPEPKVPVNSLQDIADLCQKNRDPVMRAKVRNFVRLVRLEPGRLDM 515
Query: 100 SFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF---------------EIDSDI 144
P L KLK WTG W + S + D D+
Sbjct: 516 RLGDGAPGSLPGELGVKLKEWTGIHWIVSLSKEQGQPTLVEAEGSARDARLVDARQDPDV 575
Query: 145 KAVRTIFPTAQVVCIR 160
A+ FP A++ +R
Sbjct: 576 AAILQQFPGAKITDVR 591
>gi|239830865|ref|ZP_04679194.1| DNA polymerase III, subunits gamma and tau [Ochrobactrum
intermedium LMG 3301]
gi|239823132|gb|EEQ94700.1| DNA polymerase III, subunits gamma and tau [Ochrobactrum
intermedium LMG 3301]
Length = 635
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 16/163 (9%)
Query: 14 DALNVSSFAIGENALPRNISSDECFPLA-EAGITEKQDVLNRLSACTPDNYTKQLIELCE 72
DA+ SS A + E P E + +Q V P N ++ L +
Sbjct: 445 DAVGSSSMAPASGGPATAMRIVETPPQPVEPSVAPQQFVEPTPQPSVPINSLHDVVALAD 504
Query: 73 KNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLG 132
K+ D + +++ + + S GRLE+ + P+ +++ +L NWTG W + +
Sbjct: 505 KHRDMQFKILVKSCVRLASIAPGRLEIGLTDDAPKSLPSDISQRLLNWTGIRWIVTVARD 564
Query: 133 RCCEY---------------FEIDSDIKAVRTIFPTAQVVCIR 160
+ D D+ A+ FP A++ +R
Sbjct: 565 VAGQTISEAETERRDNLVTDARADPDVAAILAAFPGAKITDVR 607
>gi|153007366|ref|YP_001368581.1| DNA polymerase III subunits gamma and tau [Ochrobactrum anthropi
ATCC 49188]
gi|151559254|gb|ABS12752.1| DNA polymerase III, subunits gamma and tau [Ochrobactrum anthropi
ATCC 49188]
Length = 605
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 15/162 (9%)
Query: 14 DALNVSSFAIGENALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEK 73
DA+ SS A + E + +Q V N P N ++ L +K
Sbjct: 416 DAVGSSSMAPASGGPATAMRIVETPQPVQPSAAPQQFVENTPQPSVPVNSLHDVVALADK 475
Query: 74 NHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGR 133
+ D + +++ + + S GRLE+ + P+ +++ +L NWTG W + +
Sbjct: 476 HRDMQFKILVKGCVRLASIAPGRLEIGLTDDAPKSLPSDISQRLLNWTGIRWVVTVARDV 535
Query: 134 CCEY---------------FEIDSDIKAVRTIFPTAQVVCIR 160
+ D D+ A+ FP A++ +R
Sbjct: 536 AGQTISEAETERRDNLVTDARADPDVAAILAAFPGAKITDVR 577
>gi|126733475|ref|ZP_01749222.1| DNA polymerase III, subunits gamma and tau [Roseobacter sp. CCS2]
gi|126716341|gb|EBA13205.1| DNA polymerase III, subunits gamma and tau [Roseobacter sp. CCS2]
Length = 612
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 14/157 (8%)
Query: 19 SSFAIGENALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYK 78
+ A A+ + P A + + V + A + ++EL + D K
Sbjct: 430 APQAGTTTAIGNTPAPTHPGPGAPSASGAQTAVALQADALQHYARFEDVVELIRTHRDVK 489
Query: 79 MVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF 138
++ ++ L +VS++ GR+EV+ + D + L +L+ WTG W I + G
Sbjct: 490 LLVEVETGLRLVSYQPGRIEVNPTPDAARDLVGRLGARLQAWTGNRWAISVAEGGGPTIA 549
Query: 139 EI--------------DSDIKAVRTIFPTAQVVCIRT 161
E +KAV IFP A++ IRT
Sbjct: 550 ETRDAAENALLQEAQDHPLVKAVIAIFPKAKITEIRT 586
>gi|319898354|ref|YP_004158447.1| DNA polymerase III gamma and tau subunit [Bartonella clarridgeiae
73]
gi|319402318|emb|CBI75857.1| DNA polymerase III gamma and tau subunit [Bartonella clarridgeiae
73]
Length = 634
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 31/154 (20%), Positives = 61/154 (39%), Gaps = 24/154 (15%)
Query: 23 IGENALPRNISS-DECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVE 81
+ N NI + P +E TE++ ++ N + +++L E++++
Sbjct: 465 VQTNQPDENIKNLSHISPQSEIETTEQKPII--------INSLQDIVDLAEQHNEIHFKL 516
Query: 82 MLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF--- 138
+++ F+H VSFE + + +E P ++ L WTG+ I
Sbjct: 517 LIKEFVHPVSFEPEHITLRLAEEAPRSLERDIKKMLHQWTGKHCTITLVNEGGEPTLQEK 576
Query: 139 ------------EIDSDIKAVRTIFPTAQVVCIR 160
+ D DI + FP A+++ IR
Sbjct: 577 SIAIQKSLFSDAQTDPDIAKILNNFPGAKIIDIR 610
>gi|327190225|gb|EGE57328.1| DNA polymerase III, tau subunit protein (DNA-directed DNA
polymerase) [Rhizobium etli CNPAF512]
Length = 178
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 17/137 (12%)
Query: 39 PLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLE 98
P A + K P N +++L + D K+ +++ F+ V E GRL+
Sbjct: 10 PQAIGRVETKP--AEAPKPLVPVNTIGDIVDLAAEKRDVKLKALVRNFVRPVRIEPGRLD 67
Query: 99 VSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEY---------------FEIDSD 143
V+ + P + LA KLK WTG W + S D D
Sbjct: 68 VNLTEGAPGTLLNELAVKLKEWTGIHWIVSTSREEGGPTMVEAEAKAQQQRVSDARQDPD 127
Query: 144 IKAVRTIFPTAQVVCIR 160
+ A+ FP A+++ +R
Sbjct: 128 VAAILAQFPGAKIIDVR 144
>gi|319403646|emb|CBI77231.1| DNA polymerase III subunit tau [Bartonella rochalimae ATCC
BAA-1498]
Length = 630
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 70/171 (40%), Gaps = 27/171 (15%)
Query: 8 KRKKKLDALNV--SSFAIGENALPRNISSDECF-PLAEAGITEKQDVLNRLSACTPDNYT 64
K +K+D N + + N L +NI + P + T+++ ++ +
Sbjct: 445 KTSEKIDFCNKIETRENVQTNQLNKNIINSSQIDPQLDTKATKEKIII---------DSL 495
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
+ +++L +++++ +++ F+H VSFE + + +E P ++ L WTG+
Sbjct: 496 QDIVDLADQHNEIHFKLLIKEFVHPVSFEPQHITLRLAEEAPRSLERDIKKMLYQWTGKH 555
Query: 125 WEIRFSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVVCIR 160
W I + D DI + FP A+++ IR
Sbjct: 556 WNITLVNEGGKPTLQEESVAIQKSLFADAQTDPDIAKILNTFPGAKIIDIR 606
>gi|254464305|ref|ZP_05077716.1| DNA polymerase III, tau subunit [Rhodobacterales bacterium Y4I]
gi|206685213|gb|EDZ45695.1| DNA polymerase III, tau subunit [Rhodobacterales bacterium Y4I]
Length = 601
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 15/125 (12%)
Query: 56 SACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLAT 115
SA + ++EL N D K++ ++ + +VS++ GR+E + + P D L +
Sbjct: 455 SALARYPSFEHVVELIRTNRDVKLLVEVETGVRLVSYQPGRIEFTPSAQAPRDLAARLGS 514
Query: 116 KLKNWTGEDWEIRFSLGRCC---------------EYFEIDSDIKAVRTIFPTAQVVCIR 160
L+NWTG W + + E ++AV FP A++ IR
Sbjct: 515 ALQNWTGARWVVSIAPDGDAPTIAEVRDAAENALREKAAAHPLVQAVLESFPKAKITRIR 574
Query: 161 TIPNL 165
T L
Sbjct: 575 TPEEL 579
>gi|121602189|ref|YP_989487.1| DNA polymerase III subunits gamma and tau [Bartonella bacilliformis
KC583]
gi|120614366|gb|ABM44967.1| DNA polymerase III, subunits gamma and tau [Bartonella
bacilliformis KC583]
Length = 634
Score = 130 bits (328), Expect = 4e-29, Method: Composition-based stats.
Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 15/140 (10%)
Query: 36 ECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELG 95
E P + + V N +++L +++ D ++ F+H VSFE G
Sbjct: 470 ESLPDSANLFSTSSTVKESEQHPFVINSLHDIVKLADQHRDIHFKLLITEFIHPVSFEPG 529
Query: 96 RLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF---------------EI 140
+ + ++ P +L L WTG+ W I +
Sbjct: 530 HIVLRLAEDAPHSLARDLKKMLHQWTGQHWAITLVNKGGKPTLQEENSAAQKALFSDVQT 589
Query: 141 DSDIKAVRTIFPTAQVVCIR 160
+ DI + FP A++V IR
Sbjct: 590 NPDIVKILNHFPGAKIVDIR 609
>gi|254453888|ref|ZP_05067325.1| DNA polymerase III, gamma and tau subunit [Octadecabacter
antarcticus 238]
gi|198268294|gb|EDY92564.1| DNA polymerase III, gamma and tau subunit [Octadecabacter
antarcticus 238]
Length = 586
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
Query: 56 SACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLAT 115
A + ++EL ++ D K++ ++ + + +++ GR+E K P D + L +
Sbjct: 440 EALAHYPTFEHIVELIRRHRDVKLLVEVETGVRLAAYQPGRIEFVPAKGAPHDLAQRLGS 499
Query: 116 KLKNWTGEDWEIRFSLGRCCEY---------------FEIDSDIKAVRTIFPTAQVVCIR 160
+L+ WTG W + E + ++AV FP A++ IR
Sbjct: 500 RLQAWTGNRWAVTLVNEGGGETIAEVRDIETNALRDKAQAHPLVQAVLMKFPGARITDIR 559
Query: 161 T 161
T
Sbjct: 560 T 560
>gi|89069708|ref|ZP_01157044.1| DNA polymerase III subunits gamma and tau [Oceanicola granulosus
HTCC2516]
gi|89044654|gb|EAR50765.1| DNA polymerase III subunits gamma and tau [Oceanicola granulosus
HTCC2516]
Length = 583
Score = 129 bits (325), Expect = 9e-29, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 18/141 (12%)
Query: 39 PLAEAGITEKQDV---LNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELG 95
P A + +A ++EL + D K++ ++ L +VS+ G
Sbjct: 417 PTHSAPAGPTAHGALAVKSETALAHYPSFAHVVELIRHHRDVKLLVEVETNLRLVSYSPG 476
Query: 96 RLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYFE---------------I 140
R+E+ + P D L ++L+ WTG W + S G
Sbjct: 477 RIEMEPTETAPPDLAAKLGSRLQAWTGVRWAVSVSSGGGGPTIAEERDAAELALKAEAAA 536
Query: 141 DSDIKAVRTIFPTAQVVCIRT 161
++AV FP A++ +RT
Sbjct: 537 HPLVQAVLQAFPKARITEVRT 557
>gi|83855097|ref|ZP_00948627.1| DNA polymerase III subunits gamma and tau [Sulfitobacter sp.
NAS-14.1]
gi|83842940|gb|EAP82107.1| DNA polymerase III subunits gamma and tau [Sulfitobacter sp.
NAS-14.1]
Length = 582
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 15/114 (13%)
Query: 63 YTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTG 122
+ ++EL N D K++ ++ + + +++ GR+E + P D + L T+L+ WTG
Sbjct: 443 TFEHVVELIRSNRDVKLLVEVETSVRLAAYQPGRIEFTPTDSAPRDLAQRLGTRLQLWTG 502
Query: 123 EDWEIRFSLGR---------------CCEYFEIDSDIKAVRTIFPTAQVVCIRT 161
W + E ++AV FP A+++ IRT
Sbjct: 503 NRWAVTIVGDSSAKTIAEVRDAKENALKSQAENHPLMQAVMASFPGAKILSIRT 556
>gi|83941620|ref|ZP_00954082.1| DNA polymerase III, gamma and tau subunits [Sulfitobacter sp.
EE-36]
gi|83847440|gb|EAP85315.1| DNA polymerase III, gamma and tau subunits [Sulfitobacter sp.
EE-36]
Length = 582
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 15/114 (13%)
Query: 63 YTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTG 122
+ ++EL N D K++ ++ + + +++ GR+E + P D + L T+L+ WTG
Sbjct: 443 TFEHVVELIRSNRDVKLLVEVETSVRLAAYQPGRIEFTPTDSAPRDLAQRLGTRLQLWTG 502
Query: 123 EDWEIRFSLGR---------------CCEYFEIDSDIKAVRTIFPTAQVVCIRT 161
W + E ++AV FP A+++ IRT
Sbjct: 503 NRWAVTIVGDSSAKTIAEIRDAKENALKSQAENHPLMQAVMASFPGAKILSIRT 556
>gi|99080007|ref|YP_612161.1| DNA polymerase III subunits gamma and tau [Ruegeria sp. TM1040]
gi|99036287|gb|ABF62899.1| DNA polymerase III subunits gamma and tau [Ruegeria sp. TM1040]
Length = 608
Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 15/125 (12%)
Query: 56 SACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLAT 115
SA + +IEL + D K++ ++ + +VS++ GR+E + P+D + T
Sbjct: 463 SALARYPSFEHVIELIRHHRDVKLLVEVETGVRLVSYQPGRIEFTPAANAPQDLAARIGT 522
Query: 116 KLKNWTGEDWEIRFSLGRCCEYFE---------------IDSDIKAVRTIFPTAQVVCIR 160
L+NWTG W + + ++AV FP A++ IR
Sbjct: 523 ALQNWTGSRWVVSIAPDGDAPTIAELRDAAQNALRAEASAHPLVQAVLQNFPKAKITKIR 582
Query: 161 TIPNL 165
T L
Sbjct: 583 TQEEL 587
>gi|260432378|ref|ZP_05786349.1| DNA polymerase III subunits gamma and tau [Silicibacter
lacuscaerulensis ITI-1157]
gi|260416206|gb|EEX09465.1| DNA polymerase III subunits gamma and tau [Silicibacter
lacuscaerulensis ITI-1157]
Length = 584
Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 16/145 (11%)
Query: 33 SSDECF-PLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVS 91
+S P G + +A + ++EL N D K++ ++ + +VS
Sbjct: 414 ASAHAPAPRGAGGAPTAALAQDVQTALARYPTFEHVVELIRANRDVKLLVEVENGVRLVS 473
Query: 92 FELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYFE------------ 139
++ GR+E + ++ P D L + L+ WTG W +
Sbjct: 474 YQPGRIEFTPTEKAPTDLAARLGSALQRWTGNRWAVSIVSDGDAPTIAELRDAAELALKA 533
Query: 140 ---IDSDIKAVRTIFPTAQVVCIRT 161
++AV T FP A++ I T
Sbjct: 534 KAEEHPLVQAVLTQFPKARITRIET 558
>gi|90419786|ref|ZP_01227695.1| DNA polymerase III, subunits gamma/tau [Aurantimonas manganoxydans
SI85-9A1]
gi|90335827|gb|EAS49575.1| DNA polymerase III, subunits gamma/tau [Aurantimonas manganoxydans
SI85-9A1]
Length = 639
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 15/135 (11%)
Query: 41 AEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVS 100
++ + + V+ +QL+ L E D M ++R+L +V GR+EV+
Sbjct: 469 GQSSRPQTRPVVQEGQPEIQIASLEQLVALSESKRDSLMTVSIRRYLRLVKLVPGRIEVA 528
Query: 101 FLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF---------------EIDSDIK 145
E P I +L KL +WTG W + S G E D ++
Sbjct: 529 LTPEAPRTLITDLTRKLHDWTGRRWVVTISNGEAKPTLDEVATARRNTLLLDAESDPEVA 588
Query: 146 AVRTIFPTAQVVCIR 160
A+ FP A+VV +R
Sbjct: 589 AILASFPGAKVVDVR 603
>gi|254487014|ref|ZP_05100219.1| DNA polymerase III, tau subunit [Roseobacter sp. GAI101]
gi|214043883|gb|EEB84521.1| DNA polymerase III, tau subunit [Roseobacter sp. GAI101]
Length = 578
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 17/142 (11%)
Query: 39 PLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLE 98
P + + +++ A P + ++EL N D K++ ++ L + +++ GR+E
Sbjct: 417 PQSGTTMAAVAPAIDQALARFP--SFEHVVELIRTNRDVKLLVEVENTLRLAAYQPGRIE 474
Query: 99 VSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGR---------------CCEYFEIDSD 143
+ P D + L T+L+ WTG W + E
Sbjct: 475 FTPTDAAPRDLAQRLGTRLQLWTGNRWAVSIVGDSDAKTIAEIRDAKDNALKSAAESHPL 534
Query: 144 IKAVRTIFPTAQVVCIRTIPNL 165
++AV FP A+++ IRT ++
Sbjct: 535 MQAVMATFPGAKILSIRTPEDI 556
>gi|197103834|ref|YP_002129211.1| DNA polymerase III subunits gamma and tau [Phenylobacterium
zucineum HLK1]
gi|196477254|gb|ACG76782.1| DNA polymerase III subunits gamma and tau [Phenylobacterium
zucineum HLK1]
Length = 605
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 53/143 (37%), Gaps = 18/143 (12%)
Query: 36 ECFPLAEAGITEKQDVLN---RLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSF 92
+ A +Q ++ + ++ L EK D + ++RF+ +S
Sbjct: 440 QAPGGGGASAVARQTMVQPQASAEPMAQLASFEDILALIEKKRDITLKLDIERFVRPISV 499
Query: 93 ELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF-------------- 138
G +E P D + L +L+ WTGE W I G E
Sbjct: 500 RPGAIEYEPAPGAPRDLAQRLVARLREWTGERWLISAQGGGGAESLWEKQKREQREVRAA 559
Query: 139 -EIDSDIKAVRTIFPTAQVVCIR 160
E D +++V FP A++V IR
Sbjct: 560 IEQDPFVQSVMQAFPGAEIVGIR 582
>gi|319408027|emb|CBI81681.1| DNA polymerase III gamma and tau subunit [Bartonella
schoenbuchensis R1]
Length = 642
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 15/131 (11%)
Query: 45 ITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKE 104
+ + + N ++ L E++ + +++ F+H VSFE G + + +
Sbjct: 486 ASSQPETETTEQKFLNINSLHDIVNLAEQHRETHFKLLIKEFVHPVSFEPGHITLRLAEN 545
Query: 105 IPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF---------------EIDSDIKAVRT 149
P ++ L WT + W I F E D DI +
Sbjct: 546 APRSLARDIKKMLHQWTEKKWTITFVTEGGGPTLQEESAAAQRALFSDVETDPDIATILN 605
Query: 150 IFPTAQVVCIR 160
FP A++V IR
Sbjct: 606 HFPGAKIVDIR 616
>gi|163744802|ref|ZP_02152162.1| DNA polymerase III subunits gamma and tau [Oceanibulbus indolifex
HEL-45]
gi|161381620|gb|EDQ06029.1| DNA polymerase III subunits gamma and tau [Oceanibulbus indolifex
HEL-45]
Length = 583
Score = 127 bits (320), Expect = 3e-28, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 57/142 (40%), Gaps = 19/142 (13%)
Query: 39 PLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLE 98
P + + L+ A P + +IEL N D K++ ++ + + +++ GR+E
Sbjct: 424 PQGQTTALAQD--LDAALARFP--TFEHVIELIRVNRDVKLLVEVETCVQLAAYQPGRIE 479
Query: 99 VSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEY---------------FEIDSD 143
+ P D + L KL+ WTG W + E +
Sbjct: 480 FVPTDDAPRDLAQRLGQKLQLWTGNRWAVSLVNEGGAETIAQIRDAWELALKKQAQEHPM 539
Query: 144 IKAVRTIFPTAQVVCIRTIPNL 165
++AV FP A++ IRT ++
Sbjct: 540 MQAVLAQFPKARITAIRTPEDI 561
>gi|13474589|ref|NP_106158.1| DNA polymerase III subunits gamma and tau [Mesorhizobium loti
MAFF303099]
gi|14025343|dbj|BAB51944.1| DNA polymerase III tau [Mesorhizobium loti MAFF303099]
Length = 604
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 59 TPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLK 118
P ++ L + D +++R + V FE GR++VS + P+ + +L TKL+
Sbjct: 463 VPVRSLADIVALADAQRDIAFKVLVKRCIRPVRFEPGRIDVSLTDDAPKLLLNDLTTKLR 522
Query: 119 NWTGEDWEIRFSLGRCCEYFE---------------IDSDIKAVRTIFPTAQVVCIRTIP 163
WTG +W + S + D + A+ FP A+++ +R IP
Sbjct: 523 AWTGRNWLVSLSKEEGGQTLAEMESTKRENAFLDAKSDPTVAAILARFPGAKIIDVR-IP 581
Query: 164 N 164
+
Sbjct: 582 D 582
>gi|222147106|ref|YP_002548063.1| DNA polymerase III subunits gamma and tau [Agrobacterium vitis S4]
gi|221734096|gb|ACM35059.1| DNA polymerase III subunits gamma and tau [Agrobacterium vitis S4]
Length = 631
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 18/161 (11%)
Query: 15 ALNVSSFAIGENALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKN 74
AL + +P+ S + E + DV P ++ LC N
Sbjct: 441 ALGQTQPTAHLQVVPKASPSPDIAARPETKPEIQPDVP---EPKVPVRSLDDIVHLCTAN 497
Query: 75 HDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRC 134
D K+ + + ++ +V E GRLE++ E P+ + +L +L+ WT W + S
Sbjct: 498 RDPKLKALTRAYVRLVKLENGRLEINLPPEAPKSLVGDLQKRLEEWTDIRWMVILSREPG 557
Query: 135 CEYF---------------EIDSDIKAVRTIFPTAQVVCIR 160
+ D D+ A+ + FP A++ +R
Sbjct: 558 EKTLAEQEKSDHEARMTDAAADPDVMAILSRFPGAKITDVR 598
>gi|86140173|ref|ZP_01058735.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. MED193]
gi|85823110|gb|EAQ43323.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. MED193]
Length = 608
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 15/122 (12%)
Query: 55 LSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLA 114
L A + ++EL + D ++E ++ +L +VS++ GR+ + ++ P+D L
Sbjct: 461 LQALARYPSFEHVVELIRQRRDGLLLEYVKTYLRLVSYQPGRITIQPTQDAPKDLAARLG 520
Query: 115 TKLKNWTGEDWEIRFSLGRCCEY---------------FEIDSDIKAVRTIFPTAQVVCI 159
+L+NWT W I + ++AV FP A++ I
Sbjct: 521 QQLQNWTHARWIISLENEGGGDTITELENAAENALRAKASEHPLVQAVMENFPKAKITRI 580
Query: 160 RT 161
RT
Sbjct: 581 RT 582
>gi|115526801|ref|YP_783712.1| DNA polymerase III subunits gamma and tau [Rhodopseudomonas
palustris BisA53]
gi|115520748|gb|ABJ08732.1| DNA polymerase III, subunits gamma and tau [Rhodopseudomonas
palustris BisA53]
Length = 629
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 36/170 (21%), Positives = 61/170 (35%), Gaps = 25/170 (14%)
Query: 17 NVSSFAIGENALPRNISSDECFPLAEAGI---------TEKQDVLNRLSACTPDNYTKQL 67
+VSS A +AL ++ P A T D +L
Sbjct: 435 SVSSGAPQASALQSSMPRIAS-PRGGAEASFSGRPQMATPAPDPAPSAMPVLKIATFPEL 493
Query: 68 IELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEI 127
+ L + D + L+ + +V E GR+E++ + I +L+ KL+ WTG W +
Sbjct: 494 VALAAEKRDLMVRAALEADVRLVRIEDGRIELALERTASRTLINDLSRKLEQWTGRRWAV 553
Query: 128 RFSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVVCIRTI 162
S E D ++ V FP A+V+ +R +
Sbjct: 554 IVSNAEGQPTLRSQALQQQTARERAAESDPRVQEVLARFPGAKVIEVRRL 603
>gi|110636381|ref|YP_676589.1| DNA polymerase III subunits gamma and tau [Mesorhizobium sp. BNC1]
gi|110287365|gb|ABG65424.1| DNA polymerase III, tau subunit [Chelativorans sp. BNC1]
Length = 600
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 16/142 (11%)
Query: 38 FPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRL 97
+ A + P + EL + N D +R + +V E GRL
Sbjct: 436 IQSSPAEYAASPQPAEAEAPSVPVKSLADITELADANRDIAFKVQFKRCVRLVQIEPGRL 495
Query: 98 EVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF---------------EIDS 142
V+ ++ P+ + +L +L+ WTG W + S + D
Sbjct: 496 SVNLTEDAPKTLLGDLTNRLQKWTGRRWIVSLSNEPGSKTLAEEESGRRETALADARADP 555
Query: 143 DIKAVRTIFPTAQVVCIRTIPN 164
+ A+ FP A+++ +R IP+
Sbjct: 556 TVAAILQSFPGARILDVR-IPD 576
>gi|319406562|emb|CBI80204.1| DNA polymerase III, subunits gamma and tau [Bartonella sp. 1-1C]
Length = 604
Score = 127 bits (318), Expect = 6e-28, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 15/123 (12%)
Query: 53 NRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIEN 112
N+L + + +++L +++++ +++ FLH VSFE + + +E P +
Sbjct: 458 NQLHKNIIIDSLQDIVDLADQHNEIHFKLLIKEFLHPVSFEPQHITLRLAEEAPRSLERD 517
Query: 113 LATKLKNWTGEDWEIRFSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVV 157
+ L WTG+ W I + D DI + FP A+++
Sbjct: 518 IKKMLYQWTGKHWTITLVNEGGKPTLQEESVAIQKSLFADAQTDPDIAKILNHFPGAKII 577
Query: 158 CIR 160
IR
Sbjct: 578 DIR 580
>gi|56698372|ref|YP_168745.1| DNA polymerase III subunits gamma and tau [Ruegeria pomeroyi DSS-3]
gi|56680109|gb|AAV96775.1| DNA polymerase III, gamma and tau subunits [Ruegeria pomeroyi
DSS-3]
Length = 583
Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 15/121 (12%)
Query: 56 SACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLAT 115
+A + L+EL N D K++ ++ L +VS++ GR+E + P D + L +
Sbjct: 437 TALARFPTFEHLVELIRANRDGKLLADIEMDLRLVSYQPGRIEFQPTERAPTDLAQRLGS 496
Query: 116 KLKNWTGEDWEIRFSLGRCC---------------EYFEIDSDIKAVRTIFPTAQVVCIR 160
L+ WTG W + E ++AV FP A++ I
Sbjct: 497 ALQRWTGNRWAVSVVAQGGGKTIDEIRNAEKYALEEKAREHPLVQAVLAQFPKARITHIE 556
Query: 161 T 161
T
Sbjct: 557 T 557
>gi|163737243|ref|ZP_02144661.1| DNA polymerase III, subunits gamma and tau [Phaeobacter
gallaeciensis BS107]
gi|161389847|gb|EDQ14198.1| DNA polymerase III, subunits gamma and tau [Phaeobacter
gallaeciensis BS107]
Length = 606
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 32/156 (20%), Positives = 58/156 (37%), Gaps = 17/156 (10%)
Query: 25 ENALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQ 84
+ +P T ++ A P + +IEL D ++E ++
Sbjct: 431 QGGMPSGPQGGPTMSTGNGQATALAPQVDSALARYP--SFEHVIELIRVKRDGLLLEYVK 488
Query: 85 RFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEY------- 137
+L +VS++ GR+ + + P+D L +L+ WT W I + E
Sbjct: 489 TYLRLVSYQPGRITIQPTDDAPKDLAARLGQQLQTWTHARWVISLANEGGGETITERDNA 548
Query: 138 --------FEIDSDIKAVRTIFPTAQVVCIRTIPNL 165
++AV FP A++ IRT +L
Sbjct: 549 AENALRAEASTHPMVQAVLESFPKAKIRHIRTAEDL 584
>gi|259415625|ref|ZP_05739546.1| DNA polymerase III subunits gamma and tau [Silicibacter sp.
TrichCH4B]
gi|259348855|gb|EEW60617.1| DNA polymerase III subunits gamma and tau [Silicibacter sp.
TrichCH4B]
Length = 625
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 15/125 (12%)
Query: 56 SACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLAT 115
SA + +IEL K+ D K++ ++ + +VS++ GR+ + P+D + T
Sbjct: 480 SALARYPSFEHVIELIRKHRDVKLLVEVEGGVRLVSYQPGRITFTPAANAPQDLAARIGT 539
Query: 116 KLKNWTGEDWEIRFSLGRCCEYFE---------------IDSDIKAVRTIFPTAQVVCIR 160
L+NWTG W + + ++AV FP A++ IR
Sbjct: 540 ALQNWTGSRWVVSIAPDGDAPTIAELRDAAENALRAEASAHPLVQAVLQNFPKAKITKIR 599
Query: 161 TIPNL 165
T L
Sbjct: 600 TQEEL 604
>gi|254474501|ref|ZP_05087887.1| DNA polymerase III, tau subunit [Ruegeria sp. R11]
gi|214028744|gb|EEB69579.1| DNA polymerase III, tau subunit [Ruegeria sp. R11]
Length = 607
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 15/124 (12%)
Query: 57 ACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATK 116
A + ++EL D ++E ++ +L +VS++ GR+ + + P+D L +
Sbjct: 462 ALARYPSFEHVLELIRVKRDGLLLEYVKTYLRLVSYQPGRITIQPTDDAPKDLAARLGQQ 521
Query: 117 LKNWTGEDWEIRFSLGRCCEY---------------FEIDSDIKAVRTIFPTAQVVCIRT 161
L+NWT W I + E ++AV FP A++ IRT
Sbjct: 522 LQNWTHARWVISLANEGGGETITERENAAENALRAEASKHPIVQAVLENFPKAKITKIRT 581
Query: 162 IPNL 165
+L
Sbjct: 582 AEDL 585
>gi|110678389|ref|YP_681396.1| DNA polymerase III subunits gamma and tau [Roseobacter
denitrificans OCh 114]
gi|109454505|gb|ABG30710.1| DNA polymerase III, tau subunit [Roseobacter denitrificans OCh 114]
Length = 582
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 58/158 (36%), Gaps = 18/158 (11%)
Query: 19 SSFAIGENALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYK 78
S G NA + ++ P + + N A ++EL N D K
Sbjct: 402 SPAPQGTNAT-AHATARPAPPSGSGTVAALAEQPNEALARFV--SFDHVVELIRANRDVK 458
Query: 79 MVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF 138
++ ++ + + ++ GR+E + + P D + L +L+ WTG W +
Sbjct: 459 LLVEVEGCVRLAQYQPGRIEFAPTENAPADLAQRLGQRLQLWTGNRWAVTIVNDASAPTI 518
Query: 139 E---------------IDSDIKAVRTIFPTAQVVCIRT 161
++AV T FP A++ I+T
Sbjct: 519 AEKRDAAELDLQSKALEHPLMQAVLTQFPKARITSIKT 556
>gi|254438399|ref|ZP_05051893.1| DNA polymerase III, subunits gamma and tau, putative
[Octadecabacter antarcticus 307]
gi|198253845|gb|EDY78159.1| DNA polymerase III, subunits gamma and tau, putative
[Octadecabacter antarcticus 307]
Length = 590
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 15/125 (12%)
Query: 52 LNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIE 111
+ A ++EL ++ D K++ ++ + + +++ GR+E K P D +
Sbjct: 440 VAEDEALVHYPTFDHIVELIRRHRDVKLLVEVETGMRLAAYQPGRIEFVPAKGAPSDLAQ 499
Query: 112 NLATKLKNWTGEDWEIRFSLGRCC---------------EYFEIDSDIKAVRTIFPTAQV 156
L ++L+ WTG W + + + ++AV FP A++
Sbjct: 500 RLGSRLQAWTGNRWAVTLVNEGGAATIAEIRDTENNALRDKAKAHPLVQAVLMKFPGARI 559
Query: 157 VCIRT 161
IRT
Sbjct: 560 TDIRT 564
>gi|254707264|ref|ZP_05169092.1| DNA polymerase III subunits gamma and tau [Brucella pinnipedialis
M163/99/10]
gi|261314747|ref|ZP_05953944.1| DNA polymerase III gamma and tau [Brucella pinnipedialis
M163/99/10]
gi|261303773|gb|EEY07270.1| DNA polymerase III gamma and tau [Brucella pinnipedialis
M163/99/10]
Length = 602
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 51/128 (39%), Gaps = 16/128 (12%)
Query: 53 NRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIEN 112
P N + ++ L +K D + +++ + S GRLE+ + P+ +
Sbjct: 452 AAAQPSVPINSLQDIVALADKYRDMQFKILVKNCVRPASIAPGRLEIGLTDDAPKSLPSD 511
Query: 113 LATKLKNWTGEDWEIRFSLGRCCEY---------------FEIDSDIKAVRTIFPTAQVV 157
+A L NWTG W + + + D D+ A+ FP A+++
Sbjct: 512 IAQHLLNWTGIRWVVTVARDVAGQTIAEAEAERRDNLVTDARADPDVAAILAAFPGAKII 571
Query: 158 CIR-TIPN 164
+R +P+
Sbjct: 572 DVRIAVPD 579
>gi|163740347|ref|ZP_02147741.1| DNA polymerase III subunits gamma and tau [Phaeobacter
gallaeciensis 2.10]
gi|161386205|gb|EDQ10580.1| DNA polymerase III subunits gamma and tau [Phaeobacter
gallaeciensis 2.10]
Length = 611
Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 15/125 (12%)
Query: 56 SACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLAT 115
SA + +IEL D ++E ++ +L +VS++ GR+ + + P+D L
Sbjct: 465 SALARYPSFEHVIELIRVKRDGLLLEYVKTYLRLVSYQPGRITIQPTDDAPKDLAARLGQ 524
Query: 116 KLKNWTGEDWEIRFSLGRCCEY---------------FEIDSDIKAVRTIFPTAQVVCIR 160
+L+ WT W I + E ++AV FP A++ IR
Sbjct: 525 QLQTWTHARWVISLANEGGGETITERENAAENALRAEASTHPMVQAVLESFPKAKIRHIR 584
Query: 161 TIPNL 165
T +L
Sbjct: 585 TAEDL 589
>gi|84685226|ref|ZP_01013125.1| DNA polymerase III subunits gamma and tau [Maritimibacter
alkaliphilus HTCC2654]
gi|84666958|gb|EAQ13429.1| DNA polymerase III subunits gamma and tau [Rhodobacterales
bacterium HTCC2654]
Length = 576
Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 16/124 (12%)
Query: 56 SACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLAT 115
+A + ++ L N D K++ ++ + + +++ GR+E + + P D LA
Sbjct: 430 NALARFPTFESVVRLIRANRDVKLLVEVETCIRLAAYQPGRIEFTPTPDAPRDLAARLAQ 489
Query: 116 KLKNWTGEDWEIRFSLG---------RCCEYFEI------DSDIKAVRTIFPTAQVVCIR 160
+L+ WTG W + R E EI ++AV FP A++ IR
Sbjct: 490 RLQGWTGARWGVSLVNDAEVPTIAETRDAEENEIKAKATEHPLVQAVLAAFPKARITEIR 549
Query: 161 TIPN 164
T P+
Sbjct: 550 T-PD 552
>gi|260574231|ref|ZP_05842236.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sp. SW2]
gi|259023697|gb|EEW26988.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sp. SW2]
Length = 577
Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 52/149 (34%), Gaps = 19/149 (12%)
Query: 32 ISSDECFPLAEAGITEKQDVLNRLSA----CTPDNYTKQLIELCEKNHDYKMVEMLQRFL 87
+ A A + L+ +Q+++L D K++ ++ L
Sbjct: 403 APTTRMQAPAAAPRGPQMAGSAALALAEGGLEAYARFEQVVDLIRDKRDMKLLVEVETCL 462
Query: 88 HVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYFEID------ 141
+ + GR+E + P D LA +L+ WTG W + G D
Sbjct: 463 RLARYSPGRIEFEPTDDAPRDLAARLAQRLQGWTGARWGVSIVSGGGAATLAEDRGKDWL 522
Query: 142 ---------SDIKAVRTIFPTAQVVCIRT 161
++AV FP A++ IR+
Sbjct: 523 AAKAEAMQNPLVQAVLAAFPNAEITAIRS 551
>gi|163842310|ref|YP_001626714.1| DNA polymerase III subunits gamma and tau [Brucella suis ATCC
23445]
gi|163673033|gb|ABY37144.1| DNA polymerase III, subunits gamma and tau [Brucella suis ATCC
23445]
Length = 602
Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 56 SACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLAT 115
P N + ++ L +K D + +++ + S GRLE+ + P+ ++A
Sbjct: 455 QPSVPINSLQDIVALADKYRDMQFKILVKNCVRPASIAPGRLEIGLTDDAPKSLPSDIAQ 514
Query: 116 KLKNWTGEDWEIRFSLGRCCEY---------------FEIDSDIKAVRTIFPTAQVVCIR 160
L NWTG W + + + D D+ A+ FP A+++ +R
Sbjct: 515 HLLNWTGIRWVVTVARDVAGQTIAEAEAERRDNLVTDARADPDVAAILAAFPGAKIIDVR 574
Query: 161 -TIPN 164
+P+
Sbjct: 575 IAVPD 579
>gi|84500405|ref|ZP_00998654.1| DNA polymerase III subunits gamma and tau [Oceanicola batsensis
HTCC2597]
gi|84391358|gb|EAQ03690.1| DNA polymerase III subunits gamma and tau [Oceanicola batsensis
HTCC2597]
Length = 581
Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 17/143 (11%)
Query: 33 SSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSF 92
+ + + + +++ A P ++EL N D K++ ++ + +V +
Sbjct: 414 PAGSGGARVHGPVAQAAEDVDQALARYP--SFDHVVELIRANRDVKLLVEVETCVRLVGY 471
Query: 93 ELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYFE------------- 139
GR+E + P D + L +L+ WTG W + + E
Sbjct: 472 RPGRIEFVPTGDAPRDLAQKLGARLQGWTGNRWAVIVANEGGGETIAETRDAKALALREE 531
Query: 140 --IDSDIKAVRTIFPTAQVVCIR 160
++AV FP A + IR
Sbjct: 532 AGAHPLVQAVLAAFPKAAITAIR 554
>gi|306843634|ref|ZP_07476235.1| DNA polymerase III, subunits gamma and tau [Brucella sp. BO1]
gi|306276325|gb|EFM58025.1| DNA polymerase III, subunits gamma and tau [Brucella sp. BO1]
Length = 602
Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 56 SACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLAT 115
P N + ++ L +K D + +++ + S GRLE+ + P+ ++A
Sbjct: 455 QPSVPINSLQDIVALADKYRDMQFKILVKNCVRPASIAPGRLEIGLTDDAPKSLPSDIAQ 514
Query: 116 KLKNWTGEDWEIRFSLGRCCEY---------------FEIDSDIKAVRTIFPTAQVVCIR 160
L NWTG W + + + D D+ A+ FP A+++ +R
Sbjct: 515 HLLNWTGIRWVVTVARDVAGQTIAEAEAERRDNLVTDARADPDVAAILAAFPGAKIIDVR 574
Query: 161 -TIPN 164
+P+
Sbjct: 575 IAVPD 579
>gi|254718255|ref|ZP_05180066.1| DNA polymerase III subunits gamma and tau [Brucella sp. 83/13]
gi|265983215|ref|ZP_06095950.1| DNA polymerase III gamma and tau [Brucella sp. 83/13]
gi|306839997|ref|ZP_07472791.1| DNA polymerase III, subunits gamma and tau [Brucella sp. NF 2653]
gi|264661807|gb|EEZ32068.1| DNA polymerase III gamma and tau [Brucella sp. 83/13]
gi|306404961|gb|EFM61246.1| DNA polymerase III, subunits gamma and tau [Brucella sp. NF 2653]
Length = 602
Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 56 SACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLAT 115
P N + ++ L +K D + +++ + S GRLE+ + P+ ++A
Sbjct: 455 QPSVPINSLQDIVALADKYRDMQFKILVKNCVRPASIAPGRLEIGLTDDAPKSLPSDIAQ 514
Query: 116 KLKNWTGEDWEIRFSLGRCCEY---------------FEIDSDIKAVRTIFPTAQVVCIR 160
L NWTG W + + + D D+ A+ FP A+++ +R
Sbjct: 515 HLLNWTGIRWVVTVARDVAGQTIAEAEAERRDNLVTDARADPDVAAILAAFPGAKIIDVR 574
Query: 161 -TIPN 164
+P+
Sbjct: 575 IAVPD 579
>gi|254713381|ref|ZP_05175192.1| DNA polymerase III subunits gamma and tau [Brucella ceti M644/93/1]
gi|254716261|ref|ZP_05178072.1| DNA polymerase III subunits gamma and tau [Brucella ceti M13/05/1]
gi|261218037|ref|ZP_05932318.1| DNA polymerase III gamma and tau [Brucella ceti M13/05/1]
gi|261321113|ref|ZP_05960310.1| DNA polymerase III gamma and tau [Brucella ceti M644/93/1]
gi|260923126|gb|EEX89694.1| DNA polymerase III gamma and tau [Brucella ceti M13/05/1]
gi|261293803|gb|EEX97299.1| DNA polymerase III gamma and tau [Brucella ceti M644/93/1]
Length = 602
Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 56 SACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLAT 115
P N + ++ L +K D + +++ + S GRLE+ + P+ ++A
Sbjct: 455 QPSVPINSLQDIVALADKYRDMQFKILVKNCVRPASIAPGRLEIGLTDDAPKSLPSDIAQ 514
Query: 116 KLKNWTGEDWEIRFSLGRCCEY---------------FEIDSDIKAVRTIFPTAQVVCIR 160
L NWTG W + + + D D+ A+ FP A+++ +R
Sbjct: 515 HLLNWTGIRWVVTVARDVAGQTIAEAEAERRDNLVTDARADPDVAAILAAFPGAKIIDVR 574
Query: 161 -TIPN 164
+P+
Sbjct: 575 IAVPD 579
>gi|23500949|ref|NP_697076.1| DNA polymerase III subunits gamma and tau [Brucella suis 1330]
gi|23346805|gb|AAN28991.1| DNA polymerase III, gamma and tau subunits [Brucella suis 1330]
Length = 602
Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 56 SACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLAT 115
P N + ++ L +K D + +++ + S GRLE+ + P+ ++A
Sbjct: 455 QPSVPINSLQDIVALADKYRDMQFKILVKNCVRPASIAPGRLEIGLTDDAPKSLPSDIAQ 514
Query: 116 KLKNWTGEDWEIRFSLGRCCEY---------------FEIDSDIKAVRTIFPTAQVVCIR 160
L NWTG W + + + D D+ A+ FP A+++ +R
Sbjct: 515 HLLNWTGIRWVVTVARDVAGQTIAEAEAERRDNLVTDARADPDVAAILAAFPGAKIIDVR 574
Query: 161 -TIPN 164
+P+
Sbjct: 575 IAVPD 579
>gi|84516011|ref|ZP_01003372.1| DNA polymerase III subunits gamma and tau [Loktanella vestfoldensis
SKA53]
gi|84510453|gb|EAQ06909.1| DNA polymerase III subunits gamma and tau [Loktanella vestfoldensis
SKA53]
Length = 572
Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats.
Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 20/131 (15%)
Query: 51 VLNRLSACTPDNY-----TKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEI 105
+A PD + +++L + D K++ ++ L +VS++ GR+ V +
Sbjct: 416 GAQTATALAPDALQHYARFEDVVQLIRHHRDVKLLVEVETGLQLVSYQPGRITVQPTADA 475
Query: 106 PEDFIENLATKLKNWTGEDWEIRFSLGRCC---------------EYFEIDSDIKAVRTI 150
D + L +L+ WTG W I + ++AV
Sbjct: 476 APDLVGRLGARLQLWTGNRWTITVVSDGGAPTIAQTRDAAETSLRDQASAHPLVQAVIAA 535
Query: 151 FPTAQVVCIRT 161
FP A++ IRT
Sbjct: 536 FPKARITDIRT 546
>gi|254694837|ref|ZP_05156665.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 3
str. Tulya]
gi|261215165|ref|ZP_05929446.1| DNA polymerase III gamma and tau [Brucella abortus bv. 3 str.
Tulya]
gi|260916772|gb|EEX83633.1| DNA polymerase III gamma and tau [Brucella abortus bv. 3 str.
Tulya]
Length = 602
Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 56 SACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLAT 115
P N + ++ L +K D + +++ + S GRLE+ + P+ ++A
Sbjct: 455 QPSVPINSLQDIVALADKYRDMQFKILVKNCVRPASIAPGRLEIGLTDDAPKSLPSDIAQ 514
Query: 116 KLKNWTGEDWEIRFSLGRCCEY---------------FEIDSDIKAVRTIFPTAQVVCIR 160
L NWTG W + + + D D+ A+ FP A+++ +R
Sbjct: 515 HLLNWTGIRWVVTVARDVAGQTIAEAEAERRDNLVTDARADPDVAAILAAFPGAKIIDVR 574
Query: 161 -TIPN 164
+P+
Sbjct: 575 IAVPD 579
>gi|62289022|ref|YP_220815.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 1
str. 9-941]
gi|82698960|ref|YP_413534.1| DNA polymerase III subunits gamma and tau [Brucella melitensis
biovar Abortus 2308]
gi|161618024|ref|YP_001591911.1| DNA polymerase III subunits gamma and tau [Brucella canis ATCC
23365]
gi|189023298|ref|YP_001934066.1| DNA polymerase III subunits gamma and tau [Brucella abortus S19]
gi|237814509|ref|ZP_04593507.1| DNA polymerase III, subunits gamma and tau [Brucella abortus str.
2308 A]
gi|254690348|ref|ZP_05153602.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 6
str. 870]
gi|254696466|ref|ZP_05158294.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 2
str. 86/8/59]
gi|254700849|ref|ZP_05162677.1| DNA polymerase III subunits gamma and tau [Brucella suis bv. 5 str.
513]
gi|254705216|ref|ZP_05167044.1| DNA polymerase III subunits gamma and tau [Brucella suis bv. 3 str.
686]
gi|254709194|ref|ZP_05171005.1| DNA polymerase III subunits gamma and tau [Brucella pinnipedialis
B2/94]
gi|254731378|ref|ZP_05189956.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 4
str. 292]
gi|256030718|ref|ZP_05444332.1| DNA polymerase III subunits gamma and tau [Brucella pinnipedialis
M292/94/1]
gi|256060177|ref|ZP_05450357.1| DNA polymerase III subunits gamma and tau [Brucella neotomae 5K33]
gi|256158724|ref|ZP_05456599.1| DNA polymerase III subunits gamma and tau [Brucella ceti M490/95/1]
gi|256254122|ref|ZP_05459658.1| DNA polymerase III subunits gamma and tau [Brucella ceti B1/94]
gi|256258602|ref|ZP_05464138.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 9
str. C68]
gi|256368500|ref|YP_003106006.1| DNA polymerase III subunits gamma and tau [Brucella microti CCM
4915]
gi|260546316|ref|ZP_05822056.1| DNA polymerase III gamma and tau subunit [Brucella abortus NCTC
8038]
gi|260567317|ref|ZP_05837787.1| DNA polymerase III gamma and tau [Brucella suis bv. 4 str. 40]
gi|260755890|ref|ZP_05868238.1| DNA polymerase III gamma and tau [Brucella abortus bv. 6 str. 870]
gi|260759114|ref|ZP_05871462.1| DNA polymerase III gamma and tau [Brucella abortus bv. 4 str. 292]
gi|260760839|ref|ZP_05873182.1| DNA polymerase III gamma and tau [Brucella abortus bv. 2 str.
86/8/59]
gi|260884914|ref|ZP_05896528.1| DNA polymerase III gamma and tau [Brucella abortus bv. 9 str. C68]
gi|261221264|ref|ZP_05935545.1| DNA polymerase III gamma and tau [Brucella ceti B1/94]
gi|261316694|ref|ZP_05955891.1| DNA polymerase III gamma and tau [Brucella pinnipedialis B2/94]
gi|261324154|ref|ZP_05963351.1| DNA polymerase III gamma and tau [Brucella neotomae 5K33]
gi|261751359|ref|ZP_05995068.1| DNA polymerase III gamma and tau [Brucella suis bv. 5 str. 513]
gi|261755924|ref|ZP_05999633.1| DNA polymerase III gamma and tau [Brucella suis bv. 3 str. 686]
gi|265987764|ref|ZP_06100321.1| DNA polymerase III gamma and tau [Brucella pinnipedialis M292/94/1]
gi|265997225|ref|ZP_06109782.1| DNA polymerase III gamma and tau [Brucella ceti M490/95/1]
gi|297247441|ref|ZP_06931159.1| DNA polymerase III subunit gamma/tau [Brucella abortus bv. 5 str.
B3196]
gi|62195154|gb|AAX73454.1| DnaX, DNA polymerase III, gamma and tau subunits [Brucella abortus
bv. 1 str. 9-941]
gi|82615061|emb|CAJ09987.1| Replication factor C conserved domain:ATP/GTP-binding site motif A
(P-loop):AAA ATPase:AAA ATPase, central region [Brucella
melitensis biovar Abortus 2308]
gi|161334835|gb|ABX61140.1| DNA polymerase III, subunits gamma and tau [Brucella canis ATCC
23365]
gi|189018870|gb|ACD71592.1| DNA polymerase III subunits gamma and tau [Brucella abortus S19]
gi|237789346|gb|EEP63556.1| DNA polymerase III, subunits gamma and tau [Brucella abortus str.
2308 A]
gi|255998658|gb|ACU47057.1| DNA polymerase III subunits gamma and tau [Brucella microti CCM
4915]
gi|260096423|gb|EEW80299.1| DNA polymerase III gamma and tau subunit [Brucella abortus NCTC
8038]
gi|260156835|gb|EEW91915.1| DNA polymerase III gamma and tau [Brucella suis bv. 4 str. 40]
gi|260669432|gb|EEX56372.1| DNA polymerase III gamma and tau [Brucella abortus bv. 4 str. 292]
gi|260671271|gb|EEX58092.1| DNA polymerase III gamma and tau [Brucella abortus bv. 2 str.
86/8/59]
gi|260675998|gb|EEX62819.1| DNA polymerase III gamma and tau [Brucella abortus bv. 6 str. 870]
gi|260874442|gb|EEX81511.1| DNA polymerase III gamma and tau [Brucella abortus bv. 9 str. C68]
gi|260919848|gb|EEX86501.1| DNA polymerase III gamma and tau [Brucella ceti B1/94]
gi|261295917|gb|EEX99413.1| DNA polymerase III gamma and tau [Brucella pinnipedialis B2/94]
gi|261300134|gb|EEY03631.1| DNA polymerase III gamma and tau [Brucella neotomae 5K33]
gi|261741112|gb|EEY29038.1| DNA polymerase III gamma and tau [Brucella suis bv. 5 str. 513]
gi|261745677|gb|EEY33603.1| DNA polymerase III gamma and tau [Brucella suis bv. 3 str. 686]
gi|262551693|gb|EEZ07683.1| DNA polymerase III gamma and tau [Brucella ceti M490/95/1]
gi|264659961|gb|EEZ30222.1| DNA polymerase III gamma and tau [Brucella pinnipedialis M292/94/1]
gi|297174610|gb|EFH33957.1| DNA polymerase III subunit gamma/tau [Brucella abortus bv. 5 str.
B3196]
Length = 602
Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 56 SACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLAT 115
P N + ++ L +K D + +++ + S GRLE+ + P+ ++A
Sbjct: 455 QPSVPINSLQDIVALADKYRDMQFKILVKNCVRPASIAPGRLEIGLTDDAPKSLPSDIAQ 514
Query: 116 KLKNWTGEDWEIRFSLGRCCEY---------------FEIDSDIKAVRTIFPTAQVVCIR 160
L NWTG W + + + D D+ A+ FP A+++ +R
Sbjct: 515 HLLNWTGIRWVVTVARDVAGQTIAEAEAERRDNLVTDARADPDVAAILAAFPGAKIIDVR 574
Query: 161 -TIPN 164
+P+
Sbjct: 575 IAVPD 579
>gi|17988191|ref|NP_540825.1| DNA polymerase III subunits gamma and tau [Brucella melitensis bv.
1 str. 16M]
gi|225851577|ref|YP_002731810.1| DNA polymerase III subunits gamma and tau [Brucella melitensis ATCC
23457]
gi|256045825|ref|ZP_05448701.1| DNA polymerase III subunits gamma and tau [Brucella melitensis bv.
1 str. Rev.1]
gi|256264911|ref|ZP_05467443.1| DNA polymerase III subunit gamma and tau [Brucella melitensis bv. 2
str. 63/9]
gi|260563116|ref|ZP_05833602.1| DNA polymerase III gamma and tau subunit [Brucella melitensis bv. 1
str. 16M]
gi|265992238|ref|ZP_06104795.1| DNA polymerase III gamma and tau [Brucella melitensis bv. 1 str.
Rev.1]
gi|17983953|gb|AAL53089.1| DNA polymerase iii subunits gamma and tau [Brucella melitensis bv.
1 str. 16M]
gi|225639942|gb|ACN99855.1| DNA polymerase III, subunits gamma and tau [Brucella melitensis
ATCC 23457]
gi|260153132|gb|EEW88224.1| DNA polymerase III gamma and tau subunit [Brucella melitensis bv. 1
str. 16M]
gi|263003304|gb|EEZ15597.1| DNA polymerase III gamma and tau [Brucella melitensis bv. 1 str.
Rev.1]
gi|263095396|gb|EEZ18997.1| DNA polymerase III subunit gamma and tau [Brucella melitensis bv. 2
str. 63/9]
gi|326408046|gb|ADZ65111.1| DNA polymerase III subunits gamma and tau [Brucella melitensis M28]
gi|326537763|gb|ADZ85978.1| DNA polymerase III, subunits gamma and tau [Brucella melitensis
M5-90]
Length = 602
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 56 SACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLAT 115
P N + ++ L +K D + +++ + S GRLE+ + P+ ++A
Sbjct: 455 QPSVPINSLQDIVALADKYRDMQFKILVKNCVRPASIAPGRLEIGLTDDAPKSLPSDIAQ 514
Query: 116 KLKNWTGEDWEIRFSLGRCCEY---------------FEIDSDIKAVRTIFPTAQVVCIR 160
L NWTG W + + + D D+ A+ FP A+++ +R
Sbjct: 515 HLLNWTGIRWVVTVARDVAGQTIAEAEAERRDNLVTDARADPDVAAILAAFPGAKIIDVR 574
Query: 161 -TIPN 164
+P+
Sbjct: 575 IAVPD 579
>gi|306842673|ref|ZP_07475317.1| DNA polymerase III, subunits gamma and tau [Brucella sp. BO2]
gi|306287182|gb|EFM58681.1| DNA polymerase III, subunits gamma and tau [Brucella sp. BO2]
Length = 602
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 56 SACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLAT 115
P N + ++ L +K D + +++ + S GRLE+ + P+ ++A
Sbjct: 455 QPSVPINSLQDIVALADKYRDMQFKILVKNCVRPASIAPGRLEIGLTDDAPKSLPSDIAQ 514
Query: 116 KLKNWTGEDWEIRFSLGRCCEY---------------FEIDSDIKAVRTIFPTAQVVCIR 160
L NWTG W + + + D D+ A+ FP A+++ +R
Sbjct: 515 HLLNWTGIRWVVTVARDVAGQTIAEAEAERRDNLVTDARADPDVAAILAAFPGAKIIDVR 574
Query: 161 -TIPN 164
+P+
Sbjct: 575 IAVPD 579
>gi|299132608|ref|ZP_07025803.1| DNA polymerase III, subunits gamma and tau [Afipia sp. 1NLS2]
gi|298592745|gb|EFI52945.1| DNA polymerase III, subunits gamma and tau [Afipia sp. 1NLS2]
Length = 616
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 17/150 (11%)
Query: 28 LPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFL 87
+P SS E + E V + + +++ L + D + L+ L
Sbjct: 447 MPPQRSSGETVARQQPQPVES--VAPQSVPTRRLSSYPEIVALASEKRDIALKAALEADL 504
Query: 88 HVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFS---------------LG 132
+V E GRLE++ + + +L KL+ WTG W + S
Sbjct: 505 RLVRMEDGRLEIALERSAARSVVNDLQRKLEQWTGRRWAVVVSNEEGQPTLRAQAQERKD 564
Query: 133 RCCEYFEIDSDIKAVRTIFPTAQVVCIRTI 162
+ E + D ++AV FP AQVV +R +
Sbjct: 565 KLTENVQADPRVQAVMAAFPGAQVVDVRRL 594
>gi|163732699|ref|ZP_02140144.1| DNA polymerase III subunits gamma and tau [Roseobacter litoralis
Och 149]
gi|161394059|gb|EDQ18383.1| DNA polymerase III subunits gamma and tau [Roseobacter litoralis
Och 149]
Length = 584
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 17/138 (12%)
Query: 39 PLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLE 98
P +T + N A ++EL N D K++ ++ + + ++ GR+E
Sbjct: 423 PSGSGTVTALAEQPNE--ALGRFISFDHVVELIRTNRDVKLLVEVEGCVRLAQYQPGRIE 480
Query: 99 VSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYFE---------------IDSD 143
+ + P D + L +L+ WTG W +
Sbjct: 481 FAPTENAPADLAQRLGQRLQLWTGNRWAVTIVNDASAPTIAEKRDAAELDLQSKALAHPM 540
Query: 144 IKAVRTIFPTAQVVCIRT 161
++AV FP A++ I+T
Sbjct: 541 MQAVLAQFPKARITSIKT 558
>gi|225626583|ref|ZP_03784622.1| DNA polymerase III, subunits gamma and tau [Brucella ceti str.
Cudo]
gi|260169621|ref|ZP_05756432.1| DNA polymerase III subunits gamma and tau [Brucella sp. F5/99]
gi|261759150|ref|ZP_06002859.1| DNA polymerase III gamma and tau [Brucella sp. F5/99]
gi|225618240|gb|EEH15283.1| DNA polymerase III, subunits gamma and tau [Brucella ceti str.
Cudo]
gi|261739134|gb|EEY27130.1| DNA polymerase III gamma and tau [Brucella sp. F5/99]
Length = 602
Score = 123 bits (308), Expect = 8e-27, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 56 SACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLAT 115
P N + ++ L +K D + +++ + S GRLE+ + P+ ++A
Sbjct: 455 QPSVPINSLQDIVALADKYRDMQFKILVKNCVRPASIAPGRLEIGLTDDAPKSLPSDIAQ 514
Query: 116 KLKNWTGEDWEIRFSLGRCCEY---------------FEIDSDIKAVRTIFPTAQVVCIR 160
L NWTG W + + + D D+ A+ FP A+++ +R
Sbjct: 515 HLLNWTGIRWVVTVARDVAGQTIAEAEAERRDNLVTDARADPDVAAILAAFPGAKIIDVR 574
Query: 161 -TIPN 164
+P+
Sbjct: 575 IAVPD 579
>gi|148559186|ref|YP_001258081.1| DNA polymerase III subunits gamma and tau [Brucella ovis ATCC
25840]
gi|148370443|gb|ABQ60422.1| replication factor C conserved domain:ATP/GTP-binding site motif A
[Brucella ovis ATCC 25840]
Length = 602
Score = 123 bits (308), Expect = 9e-27, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 56 SACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLAT 115
P N + ++ L +K D + +++ + S GRLE+ + P+ ++A
Sbjct: 455 QPSVPINSLQDIVALADKYRDMQFKILVKNCVRPASIAPGRLEIGLTDDAPKSLPSDIAQ 514
Query: 116 KLKNWTGEDWEIRFSLGRCCEY---------------FEIDSDIKAVRTIFPTAQVVCIR 160
L NWTG W + + + D D+ A+ FP A+++ +R
Sbjct: 515 HLLNWTGIRWVVTVARDVAGQTIAEAEAERRDNLVTDARADPDVAAILAAFPGAKIIDVR 574
Query: 161 -TIPN 164
+P+
Sbjct: 575 IAVPD 579
>gi|256112542|ref|ZP_05453463.1| DNA polymerase III subunits gamma and tau [Brucella melitensis bv.
3 str. Ether]
gi|265993981|ref|ZP_06106538.1| DNA polymerase III gamma and tau [Brucella melitensis bv. 3 str.
Ether]
gi|262764962|gb|EEZ10883.1| DNA polymerase III gamma and tau [Brucella melitensis bv. 3 str.
Ether]
Length = 602
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 56 SACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLAT 115
P N + +I L +K D + +++ + S GRLE+ + P+ ++A
Sbjct: 455 QPSVPINSLQDIIALADKYRDMQFKILVKNCVRPASIAPGRLEIGLTDDAPKSLPSDIAQ 514
Query: 116 KLKNWTGEDWEIRFSLGRCCEY---------------FEIDSDIKAVRTIFPTAQVVCIR 160
L NWTG W + + + D D+ A+ FP A+++ +R
Sbjct: 515 HLLNWTGIRWVVTVARDVAGQTIAEAEAERRDNLVTDARADPDVAAILAAFPGAKIIDVR 574
Query: 161 -TIPN 164
+P+
Sbjct: 575 IAVPD 579
>gi|260462019|ref|ZP_05810264.1| DNA polymerase III, subunits gamma and tau [Mesorhizobium
opportunistum WSM2075]
gi|259032266|gb|EEW33532.1| DNA polymerase III, subunits gamma and tau [Mesorhizobium
opportunistum WSM2075]
Length = 597
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 16/117 (13%)
Query: 63 YTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTG 122
++ L + D +++R + +V E GR++VS + P+ + +L KL+ WTG
Sbjct: 460 SLADIVALADAQRDIAFKVLVKRCIRLVRIEPGRIDVSLTDDAPKMLLNDLTMKLRAWTG 519
Query: 123 EDWEIRFSLGRCCEYFE---------------IDSDIKAVRTIFPTAQVVCIRTIPN 164
+W + S + D + A+ FP A+++ +R IP+
Sbjct: 520 RNWLVSLSKEEGGQTLAEMESTRRENAFLDAKSDPAVAAILARFPGAKIIDVR-IPD 575
>gi|85703838|ref|ZP_01034941.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. 217]
gi|85671158|gb|EAQ26016.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. 217]
Length = 587
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 15/125 (12%)
Query: 56 SACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLAT 115
A + ++EL N D K++ ++ L + ++ GR+E + + P D + L +
Sbjct: 441 EALARYPTFEHMLELIRTNRDVKLLLEVEGSLRLANYRPGRIEFTPTPDAPGDLAQRLGS 500
Query: 116 KLKNWTGEDWEIRFSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVVCIR 160
L+ WTG W + + ++AV FP A++ ++
Sbjct: 501 ALQRWTGNRWAVTVVNSATAPTILEARNAAEDALEAEAQQHPLVQAVFAAFPKAKIARVK 560
Query: 161 TIPNL 165
T+ ++
Sbjct: 561 TVQDI 565
>gi|294851443|ref|ZP_06792116.1| DNA polymerase III subunit gamma/tau [Brucella sp. NVSL 07-0026]
gi|294820032|gb|EFG37031.1| DNA polymerase III subunit gamma/tau [Brucella sp. NVSL 07-0026]
Length = 602
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 56 SACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLAT 115
P N + ++ L +K D + +++ + S GRLE+ + P+ ++A
Sbjct: 455 QPSVPINSLQDIVALADKYRDMQFKILVKNCVRPASIAPGRLEIGLTDDAPKSLPIDIAQ 514
Query: 116 KLKNWTGEDWEIRFSLGRCCEY---------------FEIDSDIKAVRTIFPTAQVVCIR 160
L NWTG W + + + D D+ A+ FP A+++ +R
Sbjct: 515 HLLNWTGIRWVVTVARDVAGQTIAEAEAERRDNLVTDARADPDVAAILAAFPGAKIIDVR 574
Query: 161 -TIPN 164
+P+
Sbjct: 575 IAVPD 579
>gi|255263195|ref|ZP_05342537.1| DNA polymerase III subunits gamma and tau [Thalassiobium sp. R2A62]
gi|255105530|gb|EET48204.1| DNA polymerase III subunits gamma and tau [Thalassiobium sp. R2A62]
Length = 585
Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 56 SACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLAT 115
A + ++EL + D K++ ++ + +VS+ GR+E + P+D + L +
Sbjct: 439 EALSRFVTFDHVVELIRTHRDVKLLVEVETGVKLVSYSPGRIEFAPSDAAPQDLAQRLGS 498
Query: 116 KLKNWTGEDWEIRFSLGRCCEY---------------FEIDSDIKAVRTIFPTAQVVCIR 160
+L+ +TG W I ++AV T FP +++ IR
Sbjct: 499 RLQAYTGNRWAISVVADGGAPTIADLRDEADNALKAEAAAHPMVQAVLTAFPKSKITEIR 558
Query: 161 TIPN 164
T P+
Sbjct: 559 T-PD 561
>gi|83951302|ref|ZP_00960034.1| DNA polymerase III subunits gamma and tau [Roseovarius nubinhibens
ISM]
gi|83836308|gb|EAP75605.1| DNA polymerase III subunits gamma and tau [Roseovarius nubinhibens
ISM]
Length = 620
Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 16/128 (12%)
Query: 52 LNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIE 111
L A + +IEL N D K++ ++ L + ++ GR+E + ++ D +
Sbjct: 470 LAADQALARYPSFEHVIELIRANRDVKLLVEVENCLRLAAYRPGRIEFAPTEDAAPDLAQ 529
Query: 112 NLATKLKNWTGEDWEIRFSLGRCCEYFEIDSD---------------IKAVRTIFPTAQV 156
L + L+ WTG W + E D ++AV FP+A++
Sbjct: 530 KLGSALQRWTGNRWAVTVVAEGGDETIAEKRDAARLALEAEAKKHALVQAVIANFPSAKI 589
Query: 157 VCIRTIPN 164
+ IRT P+
Sbjct: 590 LDIRT-PD 596
>gi|126739558|ref|ZP_01755250.1| DNA polymerase III subunits gamma and tau [Roseobacter sp.
SK209-2-6]
gi|126719204|gb|EBA15914.1| DNA polymerase III subunits gamma and tau [Roseobacter sp.
SK209-2-6]
Length = 603
Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 15/121 (12%)
Query: 56 SACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLAT 115
A + ++EL D ++E ++ +L +V+++ GR+ + + P+D L
Sbjct: 457 QALARYPTFEHVVELIRVKRDGLLLEYVKTYLRLVAYQPGRITIQPTNDAPKDLAARLGQ 516
Query: 116 KLKNWTGEDWEIRFSLGRCCEY---------------FEIDSDIKAVRTIFPTAQVVCIR 160
+L+ WT W I E + ++AV FP A++ IR
Sbjct: 517 QLQGWTHARWIISLENEGGGETITERENAAENALRDKAKAHPLVQAVLESFPKAKITKIR 576
Query: 161 T 161
T
Sbjct: 577 T 577
>gi|328541815|ref|YP_004301924.1| DNA polymerase III subunits gamma and tau [Polymorphum gilvum
SL003B-26A1]
gi|326411567|gb|ADZ68630.1| DNA polymerase III subunits gamma and tau [Polymorphum gilvum
SL003B-26A1]
Length = 673
Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats.
Identities = 34/169 (20%), Positives = 53/169 (31%), Gaps = 22/169 (13%)
Query: 14 DALNVSSFAIGENALPRNISSDECFPLAEAGI-----TEKQDVLNR--LSACTPDNYTKQ 66
DA A G+ + A A T Q + S +
Sbjct: 479 DAPTARLAAAGDGRPRLTAVAGGAPQQAMAPAQTPAQTPAQTPVQSPHWSPAVRLASLQD 538
Query: 67 LIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWE 126
L + D + ++R + +V F+ GR+E + D L KL WTG W
Sbjct: 539 CAALASEKRDIPLKVAIERQMRLVRFDPGRIEFQPTPDAGADLAGELGRKLTEWTGMRWI 598
Query: 127 IRFSLGRCCEY---------------FEIDSDIKAVRTIFPTAQVVCIR 160
+ S + + A+ T FP A+VV +R
Sbjct: 599 VSVSRTQGRPTIHEEREANQAQLLSDARSHPTVAALLTEFPGARVVDVR 647
>gi|209886655|ref|YP_002290512.1| DNA polymerase III, subunits gamma and tau [Oligotropha
carboxidovorans OM5]
gi|209874851|gb|ACI94647.1| DNA polymerase III, subunits gamma and tau [Oligotropha
carboxidovorans OM5]
Length = 632
Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 21/164 (12%)
Query: 20 SFAIGENALPRNISSDECFPLAEAGITEKQD------VLNRLSACTPDNYTKQLIELCEK 73
S + P A +Q V + + + ++EL +
Sbjct: 445 SAPTSVSRGPAPAPRTMPPARAANETIARQQPRPVESVAPQSAPVLRLSTYADIVELARE 504
Query: 74 NHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFS--- 130
D ++ L+ L +V E G+LE++ + + L KL+ WTG W + S
Sbjct: 505 KRDVQLKTALEADLRLVRMEDGKLEIALERSAARSVVNELQRKLEQWTGRRWAVIVSNEE 564
Query: 131 ------------LGRCCEYFEIDSDIKAVRTIFPTAQVVCIRTI 162
+ E + D ++AV T+FP +VV +R +
Sbjct: 565 GEPTLRAQARERKDKLTEDVQADPRVQAVMTLFPGTEVVDVRRL 608
>gi|114763364|ref|ZP_01442771.1| DNA polymerase III subunits gamma and tau [Pelagibaca bermudensis
HTCC2601]
gi|114543902|gb|EAU46913.1| DNA polymerase III subunits gamma and tau [Roseovarius sp.
HTCC2601]
Length = 588
Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats.
Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 21/147 (14%)
Query: 36 ECFPLAEAGITEKQDVLNRLSACTPDN------YTKQLIELCEKNHDYKMVEMLQRFLHV 89
P A N + A D+ + ++EL N D ++ ++R + +
Sbjct: 416 HVQPTHPAPSGPVATQGNAVLAVAADHALARFPTFEHVVELIRANRDMTLLMEVERCVRL 475
Query: 90 VSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLG---------------RC 134
+++ GR+E + D + L + L+ WTG W + G
Sbjct: 476 AAYQPGRIEFTPTNNARGDLAQRLGSALQRWTGNRWGVSLVNGCETATIWEQTHAAELAM 535
Query: 135 CEYFEIDSDIKAVRTIFPTAQVVCIRT 161
++A FP A++V IRT
Sbjct: 536 KAEAAEHPLVQAALAAFPKAEIVEIRT 562
>gi|159043203|ref|YP_001531997.1| DNA polymerase III subunits gamma and tau [Dinoroseobacter shibae
DFL 12]
gi|157910963|gb|ABV92396.1| DNA polymerase III [Dinoroseobacter shibae DFL 12]
Length = 587
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 15/113 (13%)
Query: 64 TKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGE 123
++ L + D K++ ++ L + ++ GR+E + + P D LA +L++WTG
Sbjct: 449 FDDVVALIRSHRDVKLLVEVEGCLRLAAYSPGRIEFAPTENAPRDLAARLAARLQSWTGA 508
Query: 124 DWEI---------RFSLGRCCEYFEI------DSDIKAVRTIFPTAQVVCIRT 161
W + + R E E+ + AV FP A++ IRT
Sbjct: 509 RWAVSVVAEADAPTIAETRDAEKLEMERNALDHPLVAAVFAAFPKARITEIRT 561
>gi|307942775|ref|ZP_07658120.1| DNA polymerase III subunit tau [Roseibium sp. TrichSKD4]
gi|307773571|gb|EFO32787.1| DNA polymerase III subunit tau [Roseibium sp. TrichSKD4]
Length = 610
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 17/149 (11%)
Query: 27 ALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRF 86
A+ + + P A A + + L +N D M ++R
Sbjct: 440 AISGGVPQVQAVPQAVAQSAPDP--TPAPVPKVALHSLQDCAALASENRDIPMKVAIERQ 497
Query: 87 LHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSL--------------- 131
+ +V FE+GR+E+ ++ P D KL WTG W + +
Sbjct: 498 MRLVKFEVGRIEIQPTEDAPADISGEFGRKLTEWTGIRWIVSVAKTGGRPTIHEEREANQ 557
Query: 132 GRCCEYFEIDSDIKAVRTIFPTAQVVCIR 160
+ + + A+ + FP A+VV +R
Sbjct: 558 AQLVSDAKSHPTVAALLSQFPGAKVVDVR 586
>gi|149203327|ref|ZP_01880297.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. TM1035]
gi|149143160|gb|EDM31199.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. TM1035]
Length = 588
Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 15/118 (12%)
Query: 63 YTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTG 122
+ ++EL N D K++ ++ + + ++ GR+E + + P D + L + L+ WTG
Sbjct: 449 SFEHVLELIRANRDVKLLLEVEGHIRLANYRPGRIEFTPTPDAPGDLAQRLGSALQRWTG 508
Query: 123 EDWEIRFSLGRCCEY---------------FEIDSDIKAVRTIFPTAQVVCIRTIPNL 165
W + ++AV FP A++ ++T ++
Sbjct: 509 NRWAVTLVNSATAPTIVEARNAAKDAAESDARQHPLVQAVFAAFPRAKIARVKTEKDI 566
>gi|260427427|ref|ZP_05781406.1| DNA polymerase III subunit tau [Citreicella sp. SE45]
gi|260421919|gb|EEX15170.1| DNA polymerase III subunit tau [Citreicella sp. SE45]
Length = 588
Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 15/114 (13%)
Query: 63 YTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTG 122
+ +IEL N D ++ ++R + + +++ GR+E + P D + L + L+ WTG
Sbjct: 449 SFEHVIELIRANRDGLLLAQVERHVRLAAYQPGRIEFTPTDNAPADLAQKLGSALQRWTG 508
Query: 123 EDWEIRFSLGRCCEY---------------FEIDSDIKAVRTIFPTAQVVCIRT 161
W + G + ++A FP+A++V IRT
Sbjct: 509 NRWGVSVVNGCETPTVYEKNHAAELAMKAEATVHPLVQAAIAAFPSAEIVEIRT 562
>gi|319779807|ref|YP_004139283.1| DNA polymerase III, subunits gamma and tau [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317165695|gb|ADV09233.1| DNA polymerase III, subunits gamma and tau [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 605
Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 56/144 (38%), Gaps = 18/144 (12%)
Query: 36 ECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELG 95
E P A + + + + P +I L + D +++ + V E G
Sbjct: 443 EASPAPVAYVAP-PEPVTEAQS-APLKSLADIIALADAQRDIAFKVLVKSCIRFVRIEPG 500
Query: 96 RLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYFE---------------I 140
R++V + P+ + +L TKL+ WTG W + S +
Sbjct: 501 RIDVGLTSDAPKMLLNDLTTKLRAWTGRSWLVSLSKEEGGQTLAEMESAKRETAFLDAKS 560
Query: 141 DSDIKAVRTIFPTAQVVCIRTIPN 164
D + A+ FP A+++ +R IP+
Sbjct: 561 DPTVAAILARFPGAKIIDVR-IPD 583
>gi|49473886|ref|YP_031928.1| DNA polymerase III subunits gamma and tau [Bartonella quintana str.
Toulouse]
gi|49239389|emb|CAF25723.1| DNA polymerase III subunit tau [Bartonella quintana str. Toulouse]
Length = 640
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 15/115 (13%)
Query: 61 DNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNW 120
+ +I+L E+ ++ +++ F+H VSFE G + + + P ++ L W
Sbjct: 502 IDSLHDIIKLAEQYNEIPFKLLVKEFVHPVSFEPGHIILRLAENAPRSLARDIKKMLSQW 561
Query: 121 TGEDWEIRFSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVVCIR 160
T + W I F E D DI + FP A++V IR
Sbjct: 562 TEKRWTITFVNEGGGPTLQEESMAVQKTLFSNAEADPDIAKILNHFPEAKIVDIR 616
>gi|148258531|ref|YP_001243116.1| DNA polymerase III subunits gamma and tau [Bradyrhizobium sp.
BTAi1]
gi|146410704|gb|ABQ39210.1| Putative DNA polymerase III (gamma and tau subunits)
[Bradyrhizobium sp. BTAi1]
Length = 613
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 31/159 (19%), Positives = 61/159 (38%), Gaps = 22/159 (13%)
Query: 26 NALPRNISSDECFPLAEAG-------ITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYK 78
++ P + LA G ++ + + + + ++L+ L KN D
Sbjct: 431 SSAPMQAPRAQGPTLAAVGGGMRPQAMSSQPSPVQQNQSALRLASFQELVALAGKNRDLI 490
Query: 79 MVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF 138
L+ + +V FE GRLE++ + + +L KL++WTG W + S
Sbjct: 491 TKSALEMDVRLVRFEDGRLEIALERTAQRSLVSDLGRKLEDWTGRRWTVIVSNEAGQPTL 550
Query: 139 ---------------EIDSDIKAVRTIFPTAQVVCIRTI 162
E D ++ + FP +V+ +R +
Sbjct: 551 REQNLRAKSEREAAAEADPRVQEILARFPGTKVIEVRRL 589
>gi|240849897|ref|YP_002971286.1| DNA polymerase III subunits gamma and tau [Bartonella grahamii
as4aup]
gi|240267020|gb|ACS50608.1| DNA polymerase III subunits gamma and tau [Bartonella grahamii
as4aup]
Length = 646
Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 61 DNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNW 120
N +++L E+++D +++ F+H VSFE G + + + P+ ++ K+ W
Sbjct: 502 INSLHDIVQLAEQHNDAPFKLLIKEFVHPVSFEAGHITLRLSENTPQFLAHDIEKKISQW 561
Query: 121 TGEDWEIRFSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVVCIR 160
T + W I F E D DI + FP A++V IR
Sbjct: 562 TEKRWTITFVNEGGGPTLQEESIAIQKTLFSNAETDPDIAKILNHFPEAKIVDIR 616
>gi|254456249|ref|ZP_05069678.1| DNA-directed DNA polymerase gamma/tau subunit [Candidatus
Pelagibacter sp. HTCC7211]
gi|207083251|gb|EDZ60677.1| DNA-directed DNA polymerase gamma/tau subunit [Candidatus
Pelagibacter sp. HTCC7211]
Length = 556
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 17/153 (11%)
Query: 25 ENALPRNISSDECFPLAEAGITEKQDVLNRLSACTP--DNYTKQLIELCEKNHDYKMVEM 82
EN N K DV + A N + L+++C + + K+
Sbjct: 394 ENEFDDNSRVINQIKNVAQEEKHKPDVKQEVEAIDKNLINSFEDLLDICTQKKEIKLKYE 453
Query: 83 LQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRC------CE 136
L++ +++V FE R+E+SF + +DF+++L++KL WT E W I FS + +
Sbjct: 454 LEKNVNLVKFERNRIEISFNDNLDKDFVKDLSSKLFEWTSERWIITFSKSKGEMSIKEKQ 513
Query: 137 YFEIDSDI---------KAVRTIFPTAQVVCIR 160
D I + V FP A+++ ++
Sbjct: 514 KNRKDKLINEVKSSETYQMVMEKFPDAELIDVK 546
>gi|114770074|ref|ZP_01447612.1| DNA polymerase III subunits gamma and tau [alpha proteobacterium
HTCC2255]
gi|114548911|gb|EAU51794.1| DNA polymerase III subunits gamma and tau [alpha proteobacterium
HTCC2255]
Length = 594
Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats.
Identities = 31/154 (20%), Positives = 61/154 (39%), Gaps = 17/154 (11%)
Query: 27 ALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRF 86
+P N+S + I Q L + Q++EL + D K++ ++ +
Sbjct: 420 QVPSNLSGTKLSSEGIMSIVAPQ--LQEEEPLVKYSEFNQVLELIRSHRDMKLLYDVETY 477
Query: 87 LHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYFE------- 139
+ VV + GRLE KE P+D + L+ KL++WT W I
Sbjct: 478 VRVVKYLPGRLEFEPTKEAPKDLAQRLSQKLQDWTKSRWAITLVNEGGAATIAEQKLEAR 537
Query: 140 --------IDSDIKAVRTIFPTAQVVCIRTIPNL 165
++A FP +++ ++++ ++
Sbjct: 538 DDLHAKVSTHPLVRATLLAFPNSEIRNVKSLKDM 571
>gi|146337878|ref|YP_001202926.1| DNA polymerase III subunits gamma and tau [Bradyrhizobium sp.
ORS278]
gi|146190684|emb|CAL74688.1| Putative DNA polymerase III (gamma and tau subunits)
[Bradyrhizobium sp. ORS278]
Length = 615
Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats.
Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 22/159 (13%)
Query: 26 NALPRNISSDECFPLAEAGITEKQDVLNRLSACTP-------DNYTKQLIELCEKNHDYK 78
+A P + LA G + ++ A ++L+ L KN D
Sbjct: 431 SAAPMQAPRMQGPTLAAVGGGMRPQAMSSQPASASHEQPALRLGSFQELVALAAKNRDLI 490
Query: 79 MVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF 138
L+ + +V FE GRLE++ + + +L KL++WTG W + S +
Sbjct: 491 TKSALEMDVRLVRFEDGRLEIALERTAQRALVSDLGRKLEDWTGRRWTVIVSNEQGQATL 550
Query: 139 ---------------EIDSDIKAVRTIFPTAQVVCIRTI 162
E D ++ + FP +V+ +R +
Sbjct: 551 REQNLRAKSEREAAAEADPRVQEILARFPGTKVIEVRRL 589
>gi|330813511|ref|YP_004357750.1| DNA polymerase III subunits gamma and tau [Candidatus Pelagibacter
sp. IMCC9063]
gi|327486606|gb|AEA81011.1| DNA polymerase III subunits gamma and tau [Candidatus Pelagibacter
sp. IMCC9063]
Length = 531
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 48 KQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPE 107
K D +N S+ + ++L++L K+ + ++ L+R + +V F+ G++++SF + + +
Sbjct: 399 KPDTVNLASSTQEIHSFQELVDLTNKHKEIELKFDLERNVRLVKFDQGKIDISFNESLSK 458
Query: 108 DFIENLATKLKNWTGEDWEIRFSLGRCCEY---------------FEIDSDIKAVRTIFP 152
DFI+NL+ KL WTG+ W I S + K V FP
Sbjct: 459 DFIKNLSLKLNEWTGKRWMITLSKAEGETSIYETKSQLKEETLKDIKQTEAYKKVLEAFP 518
Query: 153 TAQVVCI 159
A+++ +
Sbjct: 519 DAELIDV 525
>gi|254500517|ref|ZP_05112668.1| DNA polymerase III, subunits gamma and tau, putative [Labrenzia
alexandrii DFL-11]
gi|222436588|gb|EEE43267.1| DNA polymerase III, subunits gamma and tau, putative [Labrenzia
alexandrii DFL-11]
Length = 654
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 20/151 (13%)
Query: 25 ENALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQ 84
+ +P+ + + P + + SA N + L + D M +Q
Sbjct: 478 QGGMPQTAPAQQKSPQNA----PEPEPAQPQSAYNLKN-LHDCVALASEKRDIPMKVAIQ 532
Query: 85 RFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEY------- 137
R + +V FE G++E+ + P D KL WTG+ W + S +
Sbjct: 533 RQMRLVKFEPGKIEIQPTDDAPADIAGEFGRKLTEWTGQRWFVVVSRTQGRPTIHEEQEA 592
Query: 138 --------FEIDSDIKAVRTIFPTAQVVCIR 160
+ + A+ FP A+V+ ++
Sbjct: 593 NQQQLLSDAKSHPTVAALLAQFPGAKVIDVK 623
>gi|114704405|ref|ZP_01437313.1| DNA polymerase III subunits gamma and tau [Fulvimarina pelagi
HTCC2506]
gi|114539190|gb|EAU42310.1| DNA polymerase III subunits gamma and tau [Fulvimarina pelagi
HTCC2506]
Length = 668
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 16/137 (11%)
Query: 40 LAEAGITEKQDVLNR-LSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLE 98
A + ++ + + + L EL + N D ++ ++R++ + S RLE
Sbjct: 473 SAAPEVVPQRVLAQQPVKPAVEIADLVALAELAKHNRDSRLEAWIRRYVRLKSIGPRRLE 532
Query: 99 VSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF---------------EIDSD 143
+ E PE L KL +WTG W + + G + E D
Sbjct: 533 IGVTDEAPERLAGELTRKLHDWTGARWSVTVTSGVTGQTLEETKKEKRLALLRDAEQDPA 592
Query: 144 IKAVRTIFPTAQVVCIR 160
+ AV FP A++ +R
Sbjct: 593 VAAVLKAFPGARIADVR 609
>gi|126731114|ref|ZP_01746922.1| DNA polymerase III subunits gamma and tau [Sagittula stellata E-37]
gi|126708416|gb|EBA07474.1| DNA polymerase III subunits gamma and tau [Sagittula stellata E-37]
Length = 587
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 48/153 (31%), Gaps = 17/153 (11%)
Query: 24 GENALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEML 83
+P P+A + A + +++L N D K++ +
Sbjct: 411 QATGMPAPTHRGPSGPVASRSGGAAPALATE--ALAHYATFEHVLDLIRANRDVKLLVEV 468
Query: 84 QRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEY------ 137
+ L + +++ GR+E + L L+ WTG W + G
Sbjct: 469 EGGLRLAAYQPGRIEFTPTDTADPQLASKLGAALQRWTGNRWAVTLVNGCEAPTVTERRD 528
Query: 138 ---------FEIDSDIKAVRTIFPTAQVVCIRT 161
++A FP A + IRT
Sbjct: 529 AADRALKAEAAQHPLVQAALAAFPKATITSIRT 561
>gi|90426319|ref|YP_534689.1| DNA polymerase III subunits gamma and tau [Rhodopseudomonas
palustris BisB18]
gi|90108333|gb|ABD90370.1| DNA polymerase III, subunits gamma and tau [Rhodopseudomonas
palustris BisB18]
Length = 618
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 31/144 (21%), Positives = 53/144 (36%), Gaps = 20/144 (13%)
Query: 39 PLAEAGITEKQDVLNRLSACTP-----DNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFE 93
P A + + + A N +L+ L + D L+ + +V E
Sbjct: 447 PRGGAEASLRPQLSASQPAAAAAPVLTINSFPELVALAAEKRDVMTRVALEADVRLVRIE 506
Query: 94 LGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF--------------- 138
GRLE++ + I +L+ KL+ WTG W + S
Sbjct: 507 DGRLELAMERSAARTLINDLSRKLEQWTGRRWTVIVSNEEGQPTLRSQALAQQSERERAA 566
Query: 139 EIDSDIKAVRTIFPTAQVVCIRTI 162
E D ++ V FP A+V+ +R +
Sbjct: 567 EADPRVQEVLARFPGAKVLEVRRL 590
>gi|75674567|ref|YP_316988.1| DNA polymerase III subunits gamma and tau [Nitrobacter winogradskyi
Nb-255]
gi|74419437|gb|ABA03636.1| DNA polymerase III gamma/tau subunits [Nitrobacter winogradskyi
Nb-255]
Length = 611
Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats.
Identities = 32/149 (21%), Positives = 54/149 (36%), Gaps = 19/149 (12%)
Query: 27 ALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRF 86
+L +++ P A A + +L+ L + D + L+
Sbjct: 443 SLSPRAAAETARPQAAAPMA----GTAGAIPAVRIESLGELVALAGEKRDLIIKAALEAD 498
Query: 87 LHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF-------- 138
+ +V E GRLEV+ + + +L KL+ WTG W + S
Sbjct: 499 IRLVRIENGRLEVALERSAARTLVNDLGRKLEQWTGRRWTVIVSNEPGQPTLRSQALLQK 558
Query: 139 -------EIDSDIKAVRTIFPTAQVVCIR 160
E D ++ V FP A+VV +R
Sbjct: 559 SERERAAEADPRVQDVLARFPGAKVVEVR 587
>gi|298294413|ref|YP_003696352.1| DNA polymerase III subunits gamma and tau [Starkeya novella DSM
506]
gi|296930924|gb|ADH91733.1| DNA polymerase III, subunits gamma and tau [Starkeya novella DSM
506]
Length = 658
Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 54/157 (34%), Gaps = 15/157 (9%)
Query: 20 SFAIGENALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKM 79
S A + P S + + ++L+ L + D +M
Sbjct: 470 SPAPAPSQAPSAASHLSVAARGTPSAAPSPAAAPQPAPGIAIATFEELVALASQKRDLRM 529
Query: 80 VEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF- 138
L+ + +V+FE G+LE++ + ++ L KL WTG+ W + S
Sbjct: 530 KFALENNVRLVAFEDGKLELALAAGGSPNLVQELQGKLSEWTGKRWLVALSREEGEPTLA 589
Query: 139 --------------EIDSDIKAVRTIFPTAQVVCIRT 161
D + A FP A +V +RT
Sbjct: 590 EQAKSARDAMMTGVRADPLVAAALARFPGASIVDVRT 626
>gi|85717152|ref|ZP_01048111.1| DNA polymerase III subunits gamma and tau [Nitrobacter sp. Nb-311A]
gi|85696043|gb|EAQ33942.1| DNA polymerase III subunits gamma and tau [Nitrobacter sp. Nb-311A]
Length = 827
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 16/155 (10%)
Query: 22 AIGENALPRNISSDECFPLAEAGITEKQDVL-NRLSACTPDNYTKQLIELCEKNHDYKMV 80
++ +A P + D + +L+ L + D +
Sbjct: 649 SVQSSAARSLSPRAAAQPAHPQAVAPSVDTAGASATPAVRIESFTELVALAGEKRDLIIK 708
Query: 81 EMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF-- 138
L+ + +V E GRLEV+ + + +LA KL+ WTG W + S
Sbjct: 709 AALEADMRLVRMEDGRLEVALERSAARTLVNDLARKLEQWTGRRWTVIVSNEPGQPTLRS 768
Query: 139 -------------EIDSDIKAVRTIFPTAQVVCIR 160
E D ++ V FP A+VV +R
Sbjct: 769 QALLQKSERERAAEADPRVQDVLARFPGAKVVEVR 803
>gi|163757647|ref|ZP_02164736.1| DNA polymerase III subunits gamma and tau [Hoeflea phototrophica
DFL-43]
gi|162285149|gb|EDQ35431.1| DNA polymerase III subunits gamma and tau [Hoeflea phototrophica
DFL-43]
Length = 639
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 15/154 (9%)
Query: 22 AIGENALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVE 81
A+GE +P+ + LA + + ++ L EK+ D M
Sbjct: 453 AVGERHMPQTGNGQPSMRLAHSAEPSVAPPAAEPVEQVAVASLEDMVVLAEKHRDIAMKV 512
Query: 82 MLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEY---- 137
++ + +V E RLE+S + L KLK+WTG +W + S
Sbjct: 513 QIRTGVRLVRIEQTRLEISLAPDASPSLPGELVKKLKDWTGANWSVALSREEGAPTITER 572
Query: 138 -----------FEIDSDIKAVRTIFPTAQVVCIR 160
D D+ A+ + FP +++ +R
Sbjct: 573 EAAKRDALVSDARQDPDVAAILSKFPGSKITDVR 606
>gi|163867528|ref|YP_001608727.1| DNA polymerase III subunits gamma and tau [Bartonella tribocorum
CIP 105476]
gi|161017174|emb|CAK00732.1| DNA polymerase III gamma and tau subunit [Bartonella tribocorum CIP
105476]
Length = 646
Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats.
Identities = 31/153 (20%), Positives = 59/153 (38%), Gaps = 24/153 (15%)
Query: 24 GENALPRNISS-DECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEM 82
+NI++ ITE + ++ N +++L E++ D +
Sbjct: 472 QSTDFSKNIANLSHSVTQPVEEITEPKTLV--------INSLHDIVKLAEQHSDVPFKLL 523
Query: 83 LQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF---- 138
++ F+H VSFE GR+ + + P+ ++ K+ W + + + F
Sbjct: 524 VKEFVHPVSFETGRITLRLSENTPQFLAHDIEKKISQWARKRYVVTFVNEGGGPTLQEES 583
Query: 139 -----------EIDSDIKAVRTIFPTAQVVCIR 160
E D DI + FP A++V IR
Sbjct: 584 VAIQKTLFSHAETDPDIAKILNHFPEAKIVDIR 616
>gi|254462224|ref|ZP_05075640.1| DNA polymerase III, gamma and tau subunit [Rhodobacterales
bacterium HTCC2083]
gi|206678813|gb|EDZ43300.1| DNA polymerase III, gamma and tau subunit [Rhodobacteraceae
bacterium HTCC2083]
Length = 583
Score = 113 bits (282), Expect = 9e-24, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 15/114 (13%)
Query: 63 YTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTG 122
+++L N D K++ ++ + + +++ GR+E + P D + L KL+ WTG
Sbjct: 444 TFDHVVDLIRANRDVKLLVDVEGGIRLANYQPGRIEFVAHPKAPNDLAQRLGQKLQLWTG 503
Query: 123 EDWEIRFSLGRC---------------CEYFEIDSDIKAVRTIFPTAQVVCIRT 161
W + E ++AV FP+A+++ I+T
Sbjct: 504 NRWAVTLVNQGGRETIAEKRDAVDIALKEEAASHPLLQAVFEAFPSARIIDIKT 557
>gi|126463125|ref|YP_001044239.1| DNA polymerase III subunits gamma and tau [Rhodobacter sphaeroides
ATCC 17029]
gi|126104789|gb|ABN77467.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sphaeroides
ATCC 17029]
Length = 580
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 15/126 (11%)
Query: 52 LNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIE 111
+ P +Q++EL + D K++ ++ + +V F GR+E + D
Sbjct: 433 VALAPGTLPCQSFEQMVELIRQKRDMKLLYEVETGVRLVRFAPGRIEFEPAPDAAPDLAA 492
Query: 112 NLATKLKNWTGEDWEIRFSLGRCCEYFEID---------------SDIKAVRTIFPTAQV 156
L+ +L+ WTG W I G + ++AV FP A++
Sbjct: 493 RLSQRLQGWTGGRWGISVVSGGGAPTLAEERDKGRLEEEARALENPLVQAVMAAFPGARI 552
Query: 157 VCIRTI 162
IR +
Sbjct: 553 AEIRRL 558
>gi|92116083|ref|YP_575812.1| DNA polymerase III subunits gamma and tau [Nitrobacter hamburgensis
X14]
gi|91798977|gb|ABE61352.1| DNA polymerase III, subunits gamma and tau [Nitrobacter
hamburgensis X14]
Length = 615
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 33/145 (22%), Positives = 52/145 (35%), Gaps = 21/145 (14%)
Query: 39 PLAEAGITEKQDVLNRLS------ACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSF 92
P A A + + + +L+ L + D + L+ + +V
Sbjct: 448 PRAAAEPASRPQAITPMVDPTGAVPAVRLESFTELVALAGEKRDLIIKAALEADMRLVRM 507
Query: 93 ELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF-------------- 138
E GRLEV+ + + LA KL+ WTG W + S
Sbjct: 508 EDGRLEVALERSAARTLVNELARKLEQWTGRRWTVIVSNEPGQPTLRSQALLQKNERERA 567
Query: 139 -EIDSDIKAVRTIFPTAQVVCIRTI 162
E D +K V FP A+VV +R +
Sbjct: 568 AEADPRVKDVLARFPGAKVVEVRKL 592
>gi|262277951|ref|ZP_06055744.1| DNA polymerase III subunit gamma/tau [alpha proteobacterium
HIMB114]
gi|262225054|gb|EEY75513.1| DNA polymerase III subunit gamma/tau [alpha proteobacterium
HIMB114]
Length = 553
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 34/147 (23%), Positives = 69/147 (46%), Gaps = 15/147 (10%)
Query: 31 NISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVV 90
N+ S I + LN+ + + N ++LI L EK + ++ L+R + +V
Sbjct: 400 NLQSTTQIKNVSQEIESPKQNLNQNNLTSKINSFEELISLVEKKKEIELKFDLERNIRLV 459
Query: 91 SFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRC-CEYFEIDSDI----- 144
F G++++ F +++ ++FI+NL ++L WTG W I S + +E +++
Sbjct: 460 KFSEGKIDIEFNEKLSKNFIKNLTSRLLEWTGNRWIITLSKSKGDQTIYEKKNEVKKMLF 519
Query: 145 ---------KAVRTIFPTAQVVCIRTI 162
K V +FP A++ + +
Sbjct: 520 EDAKKTEIYKKVMELFPNAELTNVEEV 546
>gi|77464283|ref|YP_353787.1| DNA polymerase III subunits gamma and tau [Rhodobacter sphaeroides
2.4.1]
gi|77388701|gb|ABA79886.1| DNA polymerase III tau and gamma subunits [Rhodobacter sphaeroides
2.4.1]
Length = 582
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 15/126 (11%)
Query: 52 LNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIE 111
+ P +Q++EL + D K++ ++ + +V F GR+E + D
Sbjct: 435 VALAPGTLPCQSFEQMVELIRQKRDMKLLYEVETGVRLVRFAPGRIEFEPAPDAAPDLAA 494
Query: 112 NLATKLKNWTGEDWEIRFSLGRCCEYFEID---------------SDIKAVRTIFPTAQV 156
L+ +L+ WTG W I G + ++AV FP A++
Sbjct: 495 RLSQRLQGWTGGRWGISVVSGGGAPTLAEERDKGRLEEEARALENPLVQAVMAAFPGARI 554
Query: 157 VCIRTI 162
IR +
Sbjct: 555 AEIRRL 560
>gi|118590526|ref|ZP_01547928.1| DNA polymerase III subunits gamma and tau [Stappia aggregata IAM
12614]
gi|118436989|gb|EAV43628.1| DNA polymerase III subunits gamma and tau [Stappia aggregata IAM
12614]
Length = 640
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 45/146 (30%), Gaps = 19/146 (13%)
Query: 30 RNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHV 89
I P + + L + D +QR + +
Sbjct: 468 SAIQGGRPAPQTAPQAAPEP----QAQPAYNLKNLYDCAALASEKGDIPFKVKIQRLMRL 523
Query: 90 VSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEY------------ 137
V FE G++E+ + P D KL WTG+ W + S +
Sbjct: 524 VKFEPGKIEIQPTDDAPADIAGEFGRKLTEWTGQRWFVVVSRNQGRPTIHEEQEANQQQL 583
Query: 138 ---FEIDSDIKAVRTIFPTAQVVCIR 160
+ + A+ FP A+VV ++
Sbjct: 584 LSDAKSHPTVAALLAQFPGARVVDVK 609
>gi|158421766|ref|YP_001523058.1| ATPase [Azorhizobium caulinodans ORS 571]
gi|158328655|dbj|BAF86140.1| ATPase [Azorhizobium caulinodans ORS 571]
Length = 613
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 15/114 (13%)
Query: 62 NYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWT 121
+ ++ L + D + ++ +V FE GR+E+S + +++L+ KL WT
Sbjct: 469 SSLADVVALATQKRDLMLKHAVESHARLVHFEEGRIEISMAPGGDPNLVQDLSRKLAEWT 528
Query: 122 GEDWEIRFSLGRC---------------CEYFEIDSDIKAVRTIFPTAQVVCIR 160
G W + S + + + + AV + FP AQ+V +R
Sbjct: 529 GRRWLVSLSSKQGEATIAEIARAAREEREDGIRAEPLVAAVLSQFPGAQIVDVR 582
>gi|221640167|ref|YP_002526429.1| DNA polymerase III subunits gamma and tau [Rhodobacter sphaeroides
KD131]
gi|221160948|gb|ACM01928.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sphaeroides
KD131]
Length = 582
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 15/115 (13%)
Query: 63 YTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTG 122
+Q++EL + D K++ ++ + +V F GR+E + D L+ +L+ WTG
Sbjct: 446 SFEQMVELIRQKRDMKLLYEVETGVRLVRFAPGRIEFEPAPDAAPDLAARLSQRLQGWTG 505
Query: 123 EDWEIRFSLGRCCEYFEID---------------SDIKAVRTIFPTAQVVCIRTI 162
W I G + ++AV FP A++ IR +
Sbjct: 506 GRWGISVVSGGGAPTLAEERDKGRLEEEARALENPLVQAVMAAFPGARIAEIRRL 560
>gi|310815375|ref|YP_003963339.1| DNA polymerase III, subunits gamma and tau [Ketogulonicigenium
vulgare Y25]
gi|308754110|gb|ADO42039.1| DNA polymerase III, subunits gamma and tau [Ketogulonicigenium
vulgare Y25]
Length = 583
Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 53/154 (34%), Gaps = 18/154 (11%)
Query: 28 LPRNISSDECFPLAEAGITEKQ--DVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQR 85
P + P+A + + S P + ++EL D +++ ++
Sbjct: 408 APGGTTQARGVPMATHSASGGPVAQLAGAPSLLAPYATFEAVVELIRDQRDMRLLVEVEG 467
Query: 86 FLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEY-------- 137
+ + ++ GR+E D LAT+L+NWT W +
Sbjct: 468 TMRIARYQPGRIEFQPTPNAAPDLAGRLATRLQNWTHARWAVIIVNEGGAPTITEARDSA 527
Query: 138 -------FEIDSDIKAVRTIFPTAQVVCIRTIPN 164
+ + AV FP A++ + IP+
Sbjct: 528 ENALRDRAAQNPLVAAVLRNFPGAKI-EVTPIPD 560
>gi|170742371|ref|YP_001771026.1| DNA polymerase III subunits gamma and tau [Methylobacterium sp.
4-46]
gi|168196645|gb|ACA18592.1| DNA polymerase III, subunits gamma and tau [Methylobacterium sp.
4-46]
Length = 605
Score = 110 bits (274), Expect = 7e-23, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 15/115 (13%)
Query: 64 TKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGE 123
+ ++ L E D + L+R +H+V FE GR+E + +LA L WTG
Sbjct: 468 FEDVVALAEAKRDIGLKAALERDVHLVRFEEGRIEFRLAEAGRPSLANDLARALDLWTGR 527
Query: 124 DWEIRFSLGRCCEY---------------FEIDSDIKAVRTIFPTAQVVCIRTIP 163
W + S ++ V FP AQ+V +R P
Sbjct: 528 RWVVALSRETGEATLAARAEAARESRHQGAAAHPLVQEVLKRFPGAQIVDVRERP 582
>gi|86747794|ref|YP_484290.1| DNA polymerase III subunits gamma and tau [Rhodopseudomonas
palustris HaA2]
gi|86570822|gb|ABD05379.1| DNA polymerase III, subunits gamma and tau [Rhodopseudomonas
palustris HaA2]
Length = 627
Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 44/117 (37%), Gaps = 15/117 (12%)
Query: 61 DNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNW 120
QL+ L + D L+ + +V E GRLE++ + I L KL+ W
Sbjct: 487 ITSFPQLVALASEKRDVMTRMALEADVRLVRIEDGRLELALERTASRSLIGELGRKLEQW 546
Query: 121 TGEDWEIRFSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVVCIRTI 162
TG W + S E D ++ V FP A+V+ +R +
Sbjct: 547 TGRRWTVIVSNEPGQPTLRSQNEAQKNERERAAESDPRVQEVLARFPGAKVIEVRRL 603
>gi|220924618|ref|YP_002499920.1| DNA polymerase III subunits gamma and tau [Methylobacterium
nodulans ORS 2060]
gi|219949225|gb|ACL59617.1| DNA polymerase III, subunits gamma and tau [Methylobacterium
nodulans ORS 2060]
Length = 605
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 15/122 (12%)
Query: 54 RLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENL 113
+ + ++ L + D + L+R +H+V FE GR+E + +L
Sbjct: 463 EAAPAVRLRRFEDVVALADARRDIGLKAALERDVHLVRFEDGRIEFRLAEGGRATLANDL 522
Query: 114 ATKLKNWTGEDWEIRFSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVVC 158
A L WTG W + S ++AV FP AQ++
Sbjct: 523 ARALDLWTGRRWVVALSKETGAPTLAARTRAEIESRHQGAAAHPLVQAVLRGFPGAQIID 582
Query: 159 IR 160
+R
Sbjct: 583 VR 584
>gi|154246111|ref|YP_001417069.1| DNA polymerase III, subunits gamma and tau [Xanthobacter
autotrophicus Py2]
gi|154160196|gb|ABS67412.1| DNA polymerase III, subunits gamma and tau [Xanthobacter
autotrophicus Py2]
Length = 622
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 15/114 (13%)
Query: 63 YTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTG 122
+ + D + ++ L V E GR+EV+ + P I++L+ KL +WTG
Sbjct: 479 SLADVAQYVAAKRDLALKHAVETSLRPVHVEEGRIEVALVPGAPASVIQDLSRKLSDWTG 538
Query: 123 EDWEIRFSLGRCCEYFE---------------IDSDIKAVRTIFPTAQVVCIRT 161
W + S + AV FP A+VV +RT
Sbjct: 539 RRWLVSVSSQAGGPTLAEENAAVKAEREEGIKAHPLVAAVLARFPGAEVVDVRT 592
>gi|294678278|ref|YP_003578893.1| DNA polymerase III subunit gamma/tau [Rhodobacter capsulatus SB
1003]
gi|294477098|gb|ADE86486.1| DNA polymerase III, gamma/tau subunit [Rhodobacter capsulatus SB
1003]
Length = 589
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 16/125 (12%)
Query: 51 VLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFI 110
V SA + ++ L + D K++ +++ + +V + GR+E P D
Sbjct: 437 VSPAASALAKYARFEDVVALIGRMRDVKLLVEVEKGVRLVHYAPGRIEFEPAPGAPRDLA 496
Query: 111 ENLATKLKNWTGEDWEIRFSLGRCCEYFEIDSD----------------IKAVRTIFPTA 154
+ LA +L+ WTG W + + + ++A+ FPTA
Sbjct: 497 QTLAQRLQGWTGARWGVSVVSEGGAATIDETRNAATLAAEAEARAENRVVQAIFAAFPTA 556
Query: 155 QVVCI 159
+ I
Sbjct: 557 KFEDI 561
>gi|323136736|ref|ZP_08071817.1| DNA polymerase III, subunits gamma and tau [Methylocystis sp. ATCC
49242]
gi|322398053|gb|EFY00574.1| DNA polymerase III, subunits gamma and tau [Methylocystis sp. ATCC
49242]
Length = 610
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 15/116 (12%)
Query: 61 DNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNW 120
L+ L E+ D ++ L+ + +V FE GR+E D L KL+ W
Sbjct: 472 IASFDALVALAEEKRDIRLKLALESDVRLVRFEHGRIEFELAPGGSRDLASALMQKLQAW 531
Query: 121 TGEDWEIRFSLGRCCEY---------------FEIDSDIKAVRTIFPTAQVVCIRT 161
T E W + E D + V FP AQ+V +R+
Sbjct: 532 TNERWMVSIVAAGGAPTIKERRDAQERERRSGLEADPVVAGVLARFPGAQIVAVRS 587
>gi|49475044|ref|YP_033085.1| DNA polymerase III subunits gamma and tau [Bartonella henselae str.
Houston-1]
gi|49237849|emb|CAF27044.1| DNA polymerase III subunit tau [Bartonella henselae str. Houston-1]
Length = 646
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 15/115 (13%)
Query: 61 DNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNW 120
+ +++L E++ + ++ F+H VSFE G + + + P ++ L W
Sbjct: 502 IDSLHDIVKLAEQHDEITFKLLITEFVHPVSFEPGHIILRIAENAPHSLKNDIKKMLSQW 561
Query: 121 TGEDWEIRFSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVVCIR 160
T + I F E D DI + FP A++V IR
Sbjct: 562 TEKRLTITFVNEGGGPTLQEESMAIQKTLFSNAEADPDIAKILYHFPEAKIVDIR 616
>gi|27383227|ref|NP_774756.1| DNA polymerase III subunits gamma and tau [Bradyrhizobium japonicum
USDA 110]
gi|27356401|dbj|BAC53381.1| DNA polymerase III tau subunit [Bradyrhizobium japonicum USDA 110]
Length = 613
Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 15/117 (12%)
Query: 61 DNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNW 120
QL+ L + D L+ + +V FE GRLEV+ I LA K + W
Sbjct: 469 ITSFTQLVALAGQKRDIMTKAALEADMRLVRFEEGRLEVALEPNASRTMITELARKFELW 528
Query: 121 TGEDWEIRFSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVVCIRTI 162
TG W + S + E D ++ V + FP ++VV +R +
Sbjct: 529 TGRRWTVIVSNEQGQPTLRSVNQAAKQEHARTAEADPRVQEVLSRFPGSKVVEVRRL 585
>gi|167648530|ref|YP_001686193.1| DNA polymerase III subunits gamma and tau [Caulobacter sp. K31]
gi|167350960|gb|ABZ73695.1| DNA polymerase III, subunits gamma and tau [Caulobacter sp. K31]
Length = 632
Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 15/115 (13%)
Query: 63 YTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTG 122
+++L + D + +++F+ +SF G + P + L LK WTG
Sbjct: 502 SFDDVVKLIAEKRDIGLRLDVEQFVRPISFRPGAITFEPAPGAPGNLAGRLVRALKEWTG 561
Query: 123 EDWEIRFSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVVCIRTI 162
+ W + G E + D + +V FP A++V +R I
Sbjct: 562 QPWLVAAEGGGGAESLLERQKREDREEMDSIKADPFVASVLIAFPGAEIVEVRKI 616
>gi|254470770|ref|ZP_05084173.1| DNA polymerase III, tau subunit protein [Pseudovibrio sp. JE062]
gi|211959912|gb|EEA95109.1| DNA polymerase III, tau subunit protein [Pseudovibrio sp. JE062]
Length = 640
Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats.
Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 20/166 (12%)
Query: 17 NVSSFAIGENALP--RNISSDECFPLA--EAGIT-EKQDVLNRLSACTPDNYTKQLIELC 71
+ SS G + P R ++ + A A T + ++ ++ +L
Sbjct: 446 SASSAPSGGGSAPQLRAVAGGQPMAQAVGAAPQTAPQMRQAEEINERIAIRSWAEVAQLA 505
Query: 72 EKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSL 131
+ D + ++R L +V+F+ GR+EV + D L KL WTG W + S
Sbjct: 506 GRMKDIPVKVSVERALRLVNFQPGRIEVQPTEIATPDAAGELGRKLTEWTGRRWIVAVSR 565
Query: 132 GRCCEYF---------------EIDSDIKAVRTIFPTAQVVCIRTI 162
+ D ++ + + FP A+VV +R +
Sbjct: 566 EQGRPTLHEEKEANQRQLVSDAHSDPEVVKLISAFPGAKVVDVRIL 611
>gi|126725863|ref|ZP_01741705.1| DNA polymerase III subunits gamma and tau [Rhodobacterales
bacterium HTCC2150]
gi|126705067|gb|EBA04158.1| DNA polymerase III subunits gamma and tau [Rhodobacterales
bacterium HTCC2150]
Length = 596
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 15/141 (10%)
Query: 34 SDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFE 93
P+ G + V + A + ++EL + D K++ ++ + + ++
Sbjct: 428 QGSSTPITAQGSAQVALVSDNEPALARFPRFEDVVELIRLHRDVKLLVEVETGIRLANYS 487
Query: 94 LGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEY---------------F 138
GR+E + P D + L+ +L+ WTG W + +
Sbjct: 488 PGRIEFEASEHAPADLAQRLSARLQAWTGVRWGVTLVNEGGAKTISELRDADKIALENKA 547
Query: 139 EIDSDIKAVRTIFPTAQVVCI 159
+ +KAV FP A++ I
Sbjct: 548 RDHAMVKAVLLAFPKAKIDSI 568
>gi|188581065|ref|YP_001924510.1| DNA polymerase III, subunits gamma and tau [Methylobacterium populi
BJ001]
gi|179344563|gb|ACB79975.1| DNA polymerase III, subunits gamma and tau [Methylobacterium populi
BJ001]
Length = 623
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 15/112 (13%)
Query: 64 TKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGE 123
+ ++ E D + L+R +H+V FE GR+E + +LA L WTG
Sbjct: 481 FEDVVAQAEAARDIALKVALERDVHLVRFEEGRIEFRLAPGGRQSLANDLARALDAWTGR 540
Query: 124 DWEIRFSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVVCIR 160
W + S + ++ V + FP AQ+V +R
Sbjct: 541 RWVVAVSKEQGAPTLAENSRAAEETRHQNAAAHPLVREVLSRFPGAQIVDVR 592
>gi|91762357|ref|ZP_01264322.1| DNA-directed DNA polymerase gamma/tau subunit [Candidatus
Pelagibacter ubique HTCC1002]
gi|91718159|gb|EAS84809.1| DNA-directed DNA polymerase gamma/tau subunit [Candidatus
Pelagibacter ubique HTCC1002]
Length = 557
Score = 107 bits (266), Expect = 6e-22, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 16/135 (11%)
Query: 42 EAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSF 101
E I EK++ N + + N L++ C + K+ L++ +++VSFE R+E+SF
Sbjct: 420 EKDIKEKENN-NIETNTSLINSFDDLLKACSSKKEIKLKYELEKNVNLVSFENKRIEISF 478
Query: 102 LKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYFEIDSDIKA--------------- 146
+++ +DFI++L+TKL WT E W I S + + + +
Sbjct: 479 NEDLDKDFIKDLSTKLFEWTNERWIISLSKTKGQPSKKEEEINQKKELIESVKNSSIYKD 538
Query: 147 VRTIFPTAQVVCIRT 161
+ FP A+++ ++
Sbjct: 539 ILKSFPDAELIDVKP 553
>gi|146276573|ref|YP_001166732.1| DNA polymerase III subunits gamma and tau [Rhodobacter sphaeroides
ATCC 17025]
gi|145554814|gb|ABP69427.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sphaeroides
ATCC 17025]
Length = 582
Score = 107 bits (266), Expect = 7e-22, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 15/115 (13%)
Query: 63 YTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTG 122
Q++E+ + D K++ ++ + +V F GR+E + D L+ +L+ WTG
Sbjct: 446 SFGQMVEMIRQKRDMKLLYEVETGVRLVRFAPGRIEFEPAPDAAPDLAARLSQRLQGWTG 505
Query: 123 EDWEIRFSLGRCCEYFEID---------------SDIKAVRTIFPTAQVVCIRTI 162
W + G + ++AV FP A++ IR +
Sbjct: 506 ARWGVSVVSGGGAPTLAEERDKGRLEEEARALENPLVQAVMAAFPGARIAEIRKL 560
>gi|39933692|ref|NP_945968.1| DNA polymerase III subunits gamma and tau [Rhodopseudomonas
palustris CGA009]
gi|39647538|emb|CAE26059.1| possible DNA polymerase III tau subunit [Rhodopseudomonas palustris
CGA009]
Length = 623
Score = 107 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 44/141 (31%), Gaps = 15/141 (10%)
Query: 39 PLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLE 98
P A QL+ L + D L+ + +V E GRLE
Sbjct: 464 PDGAARSPVSAPAPAPEPPALKITTFPQLVALASEKRDVMTRLALEADVRLVRIEDGRLE 523
Query: 99 VSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF---------------EIDSD 143
++ I +L KL+ WTG W + S E D
Sbjct: 524 LALEPSASRSLINDLGRKLEQWTGRRWTVIVSNAPGEPTLRQQSMAQQNERERAAENDPR 583
Query: 144 IKAVRTIFPTAQVVCIRTIPN 164
++ V FP A++ R P
Sbjct: 584 VQEVLARFPGAKLTVRRLAPE 604
>gi|192289049|ref|YP_001989654.1| DNA polymerase III subunits gamma and tau [Rhodopseudomonas
palustris TIE-1]
gi|192282798|gb|ACE99178.1| DNA polymerase III, subunits gamma and tau [Rhodopseudomonas
palustris TIE-1]
Length = 623
Score = 107 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 44/141 (31%), Gaps = 15/141 (10%)
Query: 39 PLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLE 98
P A QL+ L + D L+ + +V E GRLE
Sbjct: 464 PDGAARSPVSAPAPAPEPPALKITTFPQLVALASEKRDVMTRLALEADVRLVRIEDGRLE 523
Query: 99 VSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF---------------EIDSD 143
++ I +L KL+ WTG W + S E D
Sbjct: 524 LALEPSASRSLINDLGRKLEQWTGRRWTVIVSNAPGEPTLRQQSMAQQNERERAAENDPR 583
Query: 144 IKAVRTIFPTAQVVCIRTIPN 164
++ V FP A++ R P
Sbjct: 584 VQEVLARFPGAKLTVRRLAPE 604
>gi|71083213|ref|YP_265932.1| DNA-directed DNA polymerase subunit gamma/tau [Candidatus
Pelagibacter ubique HTCC1062]
gi|71062326|gb|AAZ21329.1| DNA-directed DNA polymerase gamma/tau subunit [Candidatus
Pelagibacter ubique HTCC1062]
Length = 557
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 16/135 (11%)
Query: 42 EAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSF 101
E I EK++ N + + N L++ C + K+ L++ +++VSFE R+E+SF
Sbjct: 420 EKDIKEKENN-NIETNTSLINSFDDLLKACSSKKEIKLKYELEKNVNLVSFENKRIEISF 478
Query: 102 LKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCC---------------EYFEIDSDIKA 146
+++ +DFI++L+TKL WT E W I S + E + S K
Sbjct: 479 NEDLDKDFIKDLSTKLFEWTNERWIISLSKTKGQPSKKEEEINEKKELIESVKNSSIYKD 538
Query: 147 VRTIFPTAQVVCIRT 161
+ FP A+++ ++
Sbjct: 539 ILKNFPDAELIDVKP 553
>gi|89056367|ref|YP_511818.1| DNA polymerase III subunits gamma and tau [Jannaschia sp. CCS1]
gi|88865916|gb|ABD56793.1| DNA polymerase III subunits gamma and tau [Jannaschia sp. CCS1]
Length = 584
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 15/114 (13%)
Query: 63 YTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTG 122
+ ++ L E D K++ ++ L +VS+ GRLEV P D I L L TG
Sbjct: 442 TFESVVALVEGARDIKLLIEVKTCLRLVSYAPGRLEVEVTDTAPRDLIPRLGRMLHTATG 501
Query: 123 EDWEIRFSLGRCCEYFE---------------IDSDIKAVRTIFPTAQVVCIRT 161
W I + + ++AV + FP A++ IR+
Sbjct: 502 ARWGISVASSGGTTTIQEQEQAAQKEAEAEVTQHPLMQAVLSRFPKARIAEIRS 555
>gi|329849471|ref|ZP_08264317.1| DNA polymerase III, subunits gamma and tau [Asticcacaulis
biprosthecum C19]
gi|328841382|gb|EGF90952.1| DNA polymerase III, subunits gamma and tau [Asticcacaulis
biprosthecum C19]
Length = 602
Score = 105 bits (263), Expect = 1e-21, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 47/116 (40%), Gaps = 15/116 (12%)
Query: 63 YTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTG 122
Q++ L + D + +++++ ++SF+ G + P D + L+ +L+ WTG
Sbjct: 465 TFDQVLTLIAERRDIGLRTDVEQYVRLISFKPGAITFELAPRAPADLVRRLSMRLREWTG 524
Query: 123 EDWEIRFSLGRCCEY---------------FEIDSDIKAVRTIFPTAQVVCIRTIP 163
E W I G E + D + + FP A++ +R P
Sbjct: 525 ERWLIATEGGGGAESVYERDKRENDAARARLKADPFVAKLLETFPGAEITAVRARP 580
>gi|217976468|ref|YP_002360615.1| DNA polymerase III, subunits gamma and tau [Methylocella silvestris
BL2]
gi|217501844|gb|ACK49253.1| DNA polymerase III, subunits gamma and tau [Methylocella silvestris
BL2]
Length = 628
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 15/115 (13%)
Query: 62 NYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWT 121
+ ++ L K+ D +M L+R + +V F+ G +E + L KL+ WT
Sbjct: 484 SSFADIVALAAKHRDIQMKLALERDVRLVRFQDGSIEFAPGPHASPQLAPMLMRKLQEWT 543
Query: 122 GEDWEIRFSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVVCIRT 161
G W + S D ++ +FP A++V +RT
Sbjct: 544 GRRWLVAVSREAGRPSLKDEADAKAEAAMEGVRADPLVRRALELFPGAEIVAVRT 598
>gi|209965591|ref|YP_002298506.1| DNA polymerase III subunits gamma and tau [Rhodospirillum centenum
SW]
gi|209959057|gb|ACI99693.1| DNA polymerase III, subunits gamma and tau, putative
[Rhodospirillum centenum SW]
Length = 640
Score = 105 bits (261), Expect = 2e-21, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 15/112 (13%)
Query: 64 TKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGE 123
++ L + + ++ L+ +H+V FE G +E + P + + L WTG
Sbjct: 474 FADVVALFNERREARIAADLETLVHLVRFEPGLIEFRPEPQAPHNLPGRVGQLLTEWTGR 533
Query: 124 DWEIRFS----------LGRCCE-----YFEIDSDIKAVRTIFPTAQVVCIR 160
W + S R E E ++AV FP A++ IR
Sbjct: 534 RWVVSVSGAPGQPTLREKARAAEAEVRRQVEAHPLVQAVLLAFPGARIETIR 585
>gi|316932084|ref|YP_004107066.1| DNA polymerase III subunits gamma and tau [Rhodopseudomonas
palustris DX-1]
gi|315599798|gb|ADU42333.1| DNA polymerase III, subunits gamma and tau [Rhodopseudomonas
palustris DX-1]
Length = 624
Score = 105 bits (261), Expect = 2e-21, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 42/118 (35%), Gaps = 16/118 (13%)
Query: 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKN 119
QL+ L + D L+ + +V E GRLE++ I L KL+
Sbjct: 486 KITTFPQLVALASEKRDVMTRLALEADVRLVRIEDGRLELALEPTASRSLINELGRKLEQ 545
Query: 120 WTGEDWEIRFSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVVCIRTI 162
WTG W + S E D ++ V FP A++ +R +
Sbjct: 546 WTGRRWTVIVSNAPGQPTLRQQSEAQQNERERAAENDPRVQEVLARFPGAKLT-VRRL 602
>gi|312114329|ref|YP_004011925.1| DNA polymerase III subunits gamma and tau [Rhodomicrobium vannielii
ATCC 17100]
gi|311219458|gb|ADP70826.1| DNA polymerase III, subunits gamma and tau [Rhodomicrobium
vannielii ATCC 17100]
Length = 574
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 62/165 (37%), Gaps = 19/165 (11%)
Query: 17 NVSSFAIGENALPRNISSDECFPLAEAGITEK----QDVLNRLSACTPDNYTKQLIELCE 72
+ SS ++A + +S P ++ + A ++++E
Sbjct: 409 SASSAPARDSAAGASATSGGFEPARSRVLSSRGSEAVAAEAPREAARSFASFEEIVEKVR 468
Query: 73 KNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFS-- 130
D + + L+ + +V F G LE+ L+ P+ LA KL+ WTGE W + S
Sbjct: 469 AARDIMLQKALEERVELVKFGPGFLELRLLEGAPQSLAPELAKKLQAWTGERWIVSLSEE 528
Query: 131 -------------LGRCCEYFEIDSDIKAVRTIFPTAQVVCIRTI 162
+ E +K++ FP A++ +R +
Sbjct: 529 RGLPPLGARMRDEKAQAKEEIRKHPAVKSILHHFPDAEITDVRKL 573
>gi|296447822|ref|ZP_06889735.1| DNA polymerase III, subunits gamma and tau [Methylosinus
trichosporium OB3b]
gi|296254681|gb|EFH01795.1| DNA polymerase III, subunits gamma and tau [Methylosinus
trichosporium OB3b]
Length = 601
Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 46/139 (33%), Gaps = 21/139 (15%)
Query: 39 PLAEAG--ITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGR 96
P A + SA L+ + D ++ L+ + +V FE GR
Sbjct: 442 PQGAARSLAAPRP----EASAGVAFADFAALVAFVGEKRDMQLKMALETDVRLVRFEQGR 497
Query: 97 LEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF---------------EID 141
+E + L +L+ WTG W + + E D
Sbjct: 498 IEFELAPGGSTRLPQQLMQRLQEWTGTRWLVALAPSGGAPTLSEQAATRKQEERSGVESD 557
Query: 142 SDIKAVRTIFPTAQVVCIR 160
+ A+ FP A++V +R
Sbjct: 558 PLVAAIMARFPGAEIVAVR 576
>gi|315497912|ref|YP_004086716.1| DNA polymerase iii, subunits gamma and tau [Asticcacaulis
excentricus CB 48]
gi|315415924|gb|ADU12565.1| DNA polymerase III, subunits gamma and tau [Asticcacaulis
excentricus CB 48]
Length = 603
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 48/137 (35%), Gaps = 15/137 (10%)
Query: 42 EAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSF 101
G + N ++ L + D + ++R++ ++SF G +
Sbjct: 442 AQGAVMRPQAYANAQPQIQLNTFDDVLALIAEKRDIGLRVDVERYVKLISFRQGAITFEP 501
Query: 102 LKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF---------------EIDSDIKA 146
P D + L+ +LK WTG+ W I G E + D I
Sbjct: 502 APHTPIDLVRKLSARLKEWTGQRWLIATEGGGGAETYREREIREKAEALQRLRNDPFISG 561
Query: 147 VRTIFPTAQVVCIRTIP 163
+ T FP +++ R P
Sbjct: 562 LMTAFPGVEILSFRPKP 578
>gi|163851288|ref|YP_001639331.1| DNA polymerase III, subunits gamma and tau [Methylobacterium
extorquens PA1]
gi|163662893|gb|ABY30260.1| DNA polymerase III, subunits gamma and tau [Methylobacterium
extorquens PA1]
Length = 628
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 15/112 (13%)
Query: 64 TKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGE 123
+ ++ E D + L+R +H+V FE GR+E + +LA L WTG
Sbjct: 487 FEDVVAQAEAARDIALKVALERDVHLVRFEEGRIEFRLAPGGRQSLPTDLARALDAWTGR 546
Query: 124 DWEIRFSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVVCIR 160
W + S + ++ V + FP AQ+V +R
Sbjct: 547 RWLVALSKEQGAPTLAENTRAAEETRHQNAAAHPLVREVLSRFPGAQIVDVR 598
>gi|240138441|ref|YP_002962913.1| DNA polymerase III, tau and gamma subunits [Methylobacterium
extorquens AM1]
gi|240008410|gb|ACS39636.1| DNA polymerase III, tau and gamma subunits [Methylobacterium
extorquens AM1]
Length = 626
Score = 103 bits (258), Expect = 5e-21, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 47/141 (33%), Gaps = 17/141 (12%)
Query: 37 CFPLAEAGITEKQDVLNR--LSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFEL 94
P + + A + ++ E D + L+R +H+V FE
Sbjct: 456 AVPSPVSAAAPQPASRPAPVAPAGPRLGRFEDVVAQAEAARDIALKVALERDVHLVRFEE 515
Query: 95 GRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF---------------E 139
GR+E + +LA L WTG W + S +
Sbjct: 516 GRIEFRLAPGGRQSLPTDLARALDAWTGRRWLVALSKEQGAPTLAENTRAAEETRHQNAA 575
Query: 140 IDSDIKAVRTIFPTAQVVCIR 160
++ V + FP AQ+V +R
Sbjct: 576 AHPLVREVLSRFPGAQIVDVR 596
>gi|254560987|ref|YP_003068082.1| DNA polymerase III, tau and subunit gammas [Methylobacterium
extorquens DM4]
gi|254268265|emb|CAX24200.1| DNA polymerase III, tau and gamma subunits [Methylobacterium
extorquens DM4]
Length = 626
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 15/112 (13%)
Query: 64 TKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGE 123
+ ++ E D + L+R +H+V FE GR+E + +LA L WTG
Sbjct: 485 FEDVVAQAEAARDIALKVALERDVHLVRFEEGRIEFRLAPGGRQSLPTDLARALDAWTGR 544
Query: 124 DWEIRFSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVVCIR 160
W + S + ++ V + FP AQ+V +R
Sbjct: 545 RWLVALSKEQGAPTLAENTRAAEETRHQNAAAHPLVREVLSRFPGAQIVDVR 596
>gi|154250711|ref|YP_001411535.1| DNA polymerase III subunits gamma and tau [Parvibaculum
lavamentivorans DS-1]
gi|154154661|gb|ABS61878.1| DNA polymerase III, subunits gamma and tau [Parvibaculum
lavamentivorans DS-1]
Length = 623
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 32/149 (21%), Positives = 53/149 (35%), Gaps = 17/149 (11%)
Query: 29 PRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLH 88
PR + E + S + ++ L K D ++ L+ +
Sbjct: 445 PRAQLRSVSTLRTDFQPAEATPAVAATSPAAVVRTFEDVVALVSKQRDIRLKHALEAGVR 504
Query: 89 VVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLG---------------- 132
+VSFE GR+E+S L+ + L+ L TG W + + G
Sbjct: 505 LVSFEPGRIEISLLEGTQSTIVSELSDTLSKATGTRWFVSVARGPAPATPTLREQAQTRE 564
Query: 133 -RCCEYFEIDSDIKAVRTIFPTAQVVCIR 160
E D +KA FP A++V +R
Sbjct: 565 EAARETARADPLVKAALAAFPGAEIVNVR 593
>gi|218530155|ref|YP_002420971.1| DNA polymerase III subunits gamma and tau [Methylobacterium
chloromethanicum CM4]
gi|218522458|gb|ACK83043.1| DNA polymerase III, subunits gamma and tau [Methylobacterium
chloromethanicum CM4]
Length = 626
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 15/112 (13%)
Query: 64 TKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGE 123
+ ++ E D + L+R +H+V FE GR+E + +LA L WTG
Sbjct: 485 FEDVVAQAEAARDIALKVALERDVHLVRFEEGRIEFRLAPGGRQSLPTDLARALDAWTGR 544
Query: 124 DWEIRFSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVVCIR 160
W + S + ++ V + FP AQ+V +R
Sbjct: 545 RWLVALSKEQGAPTLAENTRAAEETRHQNAAAHPLVREVLSRFPGAQIVDVR 596
>gi|182677255|ref|YP_001831401.1| DNA polymerase III, subunits gamma and tau [Beijerinckia indica
subsp. indica ATCC 9039]
gi|182633138|gb|ACB93912.1| DNA polymerase III, subunits gamma and tau [Beijerinckia indica
subsp. indica ATCC 9039]
Length = 651
Score = 103 bits (256), Expect = 9e-21, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 23/163 (14%)
Query: 18 VSSFAIGENALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDY 77
V+S +G A + ++ PLA + + + + L+ L + D
Sbjct: 457 VTSSRLGAQAATQ--AASHMAPLAVSAPSLQPGLAQA--PAIRLQSFGALVALAGEKRDI 512
Query: 78 KMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFS------- 130
++ L+R + +V FE G +E + + L +L+ WTG W + +
Sbjct: 513 QLKTALERDVRLVRFEEGTIEFALAPGASPQLAQTLMRRLQEWTGTRWMVAIASETSGGA 572
Query: 131 ------------LGRCCEYFEIDSDIKAVRTIFPTAQVVCIRT 161
+ E D ++ + FP AQ++ +R
Sbjct: 573 AALTLKEQAEKQAAAVRQGIEADPLVRKALSQFPGAQIIAVRP 615
>gi|170749547|ref|YP_001755807.1| DNA polymerase III, subunits gamma and tau [Methylobacterium
radiotolerans JCM 2831]
gi|170656069|gb|ACB25124.1| DNA polymerase III, subunits gamma and tau [Methylobacterium
radiotolerans JCM 2831]
Length = 637
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 16/117 (13%)
Query: 64 TKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGE 123
+ LI L + N D + L+R +H+V FE GR+E ++A ++ WTG
Sbjct: 495 FEDLIALADANRDILLRTALERDVHLVRFEEGRMEFRLASGGRSSLATDIAAAIERWTGR 554
Query: 124 DWEIRFSLGRCCEYFE---------------IDSDIKAVRTIFPTAQVVCIR-TIPN 164
W + S + D ++ V T FP A++V +R T P
Sbjct: 555 RWVVALSKDEGAPTLDAAARAATETRRENAAADPFVREVLTRFPGAEIVDVRETAPE 611
>gi|304320347|ref|YP_003853990.1| DNA polymerase III subunits gamma and tau [Parvularcula bermudensis
HTCC2503]
gi|303299249|gb|ADM08848.1| DNA polymerase III subunits gamma and tau [Parvularcula bermudensis
HTCC2503]
Length = 607
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 33/152 (21%), Positives = 56/152 (36%), Gaps = 11/152 (7%)
Query: 22 AIGENALPRNISSDECFPLAEAGITEKQDVLNRLSACTP--DNYTKQLIELCEKNHDYKM 79
A+ NA P P + + +L S + L D ++
Sbjct: 445 AVAVNAAPDAGPHTAPDPAQPSPERPARPMLTAPSPAPSPTIETLDDIAALAGVKRDARL 504
Query: 80 VEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFS--------- 130
E ++ L V E GRL+V+ + P+D L LK WTG W +
Sbjct: 505 REEIETCLIPVHLETGRLDVAVTEAAPKDLTGRLGQALKAWTGRPWIVSIVADPGEVPTI 564
Query: 131 LGRCCEYFEIDSDIKAVRTIFPTAQVVCIRTI 162
GR + + + + A + FP A++ +R +
Sbjct: 565 RGRRNQAIKANPVVNAALSAFPKARIAAVRPL 596
>gi|114568986|ref|YP_755666.1| DNA polymerase III subunits gamma and tau [Maricaulis maris MCS10]
gi|114339448|gb|ABI64728.1| DNA polymerase III, tau subunit [Maricaulis maris MCS10]
Length = 606
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 20/149 (13%)
Query: 28 LPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFL 87
+ R+ ++ EA +QD A + + L++L + D + ++R++
Sbjct: 444 MDRDAAAHRALSAPEAVAQVEQD----APAISGPQTWEALMDLLREKRDIGLQSDVERYV 499
Query: 88 HVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEI----RFSLGRC--------- 134
F+ G +++ P D + L+ +L WTGE W I G
Sbjct: 500 RPAVFKPGSFTFQPIEDAPRDLAQRLSRRLLEWTGERWMILADGSLEGGETWSERRLRLK 559
Query: 135 ---CEYFEIDSDIKAVRTIFPTAQVVCIR 160
E D + V +FP A++V IR
Sbjct: 560 AERLEAARHDPAVTEVMRLFPGAEIVKIR 588
>gi|296775809|gb|ADH43064.1| DNA polymerase III, gamma/tau subunits [uncultured SAR11 cluster
alpha proteobacterium H17925_48B19]
Length = 514
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 30 RNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHV 89
+NIS E K +V+N L + LI LC + + K+ L+ ++
Sbjct: 402 KNISQQEKI----EPNLNKDEVINELK----IGSFESLINLCTERKEAKLKYELETNTNL 453
Query: 90 VSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRC 134
VSF G +E+SF + + +DFI+NL+ KL WT + W I S +
Sbjct: 454 VSFSEGLIEISFNENLDKDFIKNLSNKLYEWTSKRWIISLSKNQG 498
>gi|302381707|ref|YP_003817530.1| DNA polymerase III subunits gamma/tau [Brevundimonas subvibrioides
ATCC 15264]
gi|302192335|gb|ADK99906.1| DNA polymerase III, subunits gamma and tau [Brevundimonas
subvibrioides ATCC 15264]
Length = 612
Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 15/115 (13%)
Query: 63 YTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTG 122
+ ++ L + + + +QR++ VSF+ G L ++ P + L+++LK WTG
Sbjct: 480 TFEAVVALIGERREIALQMDVQRYVRPVSFKPGALTYEPVEGAPANLATRLSSRLKEWTG 539
Query: 123 EDWEIRFSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVVCIRTI 162
W + + E E D + AV FP A V I+T+
Sbjct: 540 RPWFVVANGQGGGETLIEQEKKATAALRAEVEADPFVVAVMAAFPGAVVGEIKTL 594
>gi|300024235|ref|YP_003756846.1| DNA polymerase III subunits gamma and tau [Hyphomicrobium
denitrificans ATCC 51888]
gi|299526056|gb|ADJ24525.1| DNA polymerase III, subunits gamma and tau [Hyphomicrobium
denitrificans ATCC 51888]
Length = 617
Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats.
Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 17/133 (12%)
Query: 48 KQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFEL--GRLEVSFLKEI 105
+Q L+ S ++ L + D K+ L+ + +V F+ G ++V L +
Sbjct: 471 EQTSLSSASRLPDPRSFVDVVTLVGEKRDVKLKMHLENDVSLVKFDAVAGSIDVFLLPDA 530
Query: 106 PEDFIENLATKLKNWTGEDWEIRFSLGRCC---------------EYFEIDSDIKAVRTI 150
P + +L KL WTG W + S E + ++AV
Sbjct: 531 PPELANDLREKLNLWTGRRWVVVLSKDAGQRPIGVVRREREAAELEQLKQHPAMRAVLQA 590
Query: 151 FPTAQVVCIRTIP 163
FP A++ +R +P
Sbjct: 591 FPDAKIAEVRRLP 603
>gi|304392342|ref|ZP_07374283.1| DNA polymerase III subunit tau [Ahrensia sp. R2A130]
gi|303295446|gb|EFL89805.1| DNA polymerase III subunit tau [Ahrensia sp. R2A130]
Length = 672
Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 48/149 (32%), Gaps = 18/149 (12%)
Query: 27 ALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRF 86
A P + + P A+ E A K +++L E D + L+
Sbjct: 467 AEPVKRPAPQLVPQAD---PEPVAPPVAAPAYDNVESLKDMLDLAEAKRDIRFKMQLRNN 523
Query: 87 LHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEI---------------RFSL 131
VSF G + P+D + +L +WTG W +
Sbjct: 524 FSEVSFAPGHIVFRPTGNAPKDLARTITDRLLDWTGTRWTVETTHEGGSETISDQESAEH 583
Query: 132 GRCCEYFEIDSDIKAVRTIFPTAQVVCIR 160
R E + AV FP +++ +R
Sbjct: 584 DRTMADAEAHPVVAAVLKAFPRSKITQVR 612
>gi|91974569|ref|YP_567228.1| DNA polymerase III subunits gamma and tau [Rhodopseudomonas
palustris BisB5]
gi|91681025|gb|ABE37327.1| DNA polymerase III, subunits gamma and tau [Rhodopseudomonas
palustris BisB5]
Length = 624
Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 16/118 (13%)
Query: 60 PDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKN 119
QL+ L + D L+ + +V + GRLE++ + I +L KL+
Sbjct: 484 KITTFPQLVALASEKRDVMTRMALEADVRLVRIDDGRLELALERTASRSLINDLGRKLEQ 543
Query: 120 WTGEDWEIRFSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVVCIRTI 162
WTG W + S E D ++ V FP A+ +R +
Sbjct: 544 WTGRRWTVIVSNEPGQPTLRSQSEAQKNERERAAESDPRVREVLAKFPGAKF-EVRRL 600
>gi|297182771|gb|ADI18925.1| DNA polymerase III, gamma/tau subunits [uncultured SAR11 cluster
bacterium HF0010_09O16]
Length = 557
Score = 98.6 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 61/145 (42%), Gaps = 16/145 (11%)
Query: 30 RNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHV 89
IS + + EK + + N L+ +C + + K+ L++ +++
Sbjct: 407 ETISQIKNISQEQKLKIEKDEGIKAGGKLN-VNSFDDLLIICNQKKEIKLKYELEKNVNL 465
Query: 90 VSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYFEIDSDIKAV-- 147
V F+ ++E+SF + + ++F+++L+ KL WTGE W I S + + K +
Sbjct: 466 VRFDNKQIEISFNENLDKNFVKDLSLKLFEWTGERWIITLSKTKGGLSVKDKEKNKRIEN 525
Query: 148 -------------RTIFPTAQVVCI 159
FP A ++ +
Sbjct: 526 INNAKQSKLYKSLIEKFPDADLIDV 550
>gi|297183472|gb|ADI19603.1| DNA polymerase III, gamma/tau subunits [uncultured SAR11 cluster
bacterium HF0770_37D02]
Length = 563
Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 46/97 (47%)
Query: 48 KQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPE 107
K L + LI+L K + ++ L+R + ++ F G+++++F + I +
Sbjct: 433 KPKNLTENLNLETIPSFEDLIKLTSKKREVELKYDLERNVKLIKFSEGKIDINFDENIGK 492
Query: 108 DFIENLATKLKNWTGEDWEIRFSLGRCCEYFEIDSDI 144
+F+ NLA KL WTG+ W I + + F I
Sbjct: 493 NFVRNLAEKLLKWTGKRWIITLTKSTDQKTFLEHQSI 529
>gi|254421036|ref|ZP_05034760.1| DNA polymerase III, subunits gamma and tau, putative [Brevundimonas
sp. BAL3]
gi|196187213|gb|EDX82189.1| DNA polymerase III, subunits gamma and tau, putative [Brevundimonas
sp. BAL3]
Length = 623
Score = 97.8 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 15/115 (13%)
Query: 63 YTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTG 122
+Q++ L + + + ++RF+ VSF+ G + ++ P + LA +L+ WTG
Sbjct: 490 TFEQVVALIGEKREVGLQMDVERFVKPVSFKPGAIVYESVEGAPVELARRLAGRLREWTG 549
Query: 123 EDWEIRFSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVVCIRTI 162
W I + E E D IKAV FP A++ I+TI
Sbjct: 550 RTWLIAANGQGGGETLIERQKKERAAEREKVEADPFIKAVLLAFPGAKLGEIKTI 604
>gi|221233207|ref|YP_002515643.1| DNA polymerase III subunits gamma and tau [Caulobacter crescentus
NA1000]
gi|220962379|gb|ACL93735.1| DNA polymerase III subunit gamma/tau [Caulobacter crescentus
NA1000]
Length = 623
Score = 97.4 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 15/115 (13%)
Query: 63 YTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTG 122
++ L D + +++++ ++F G + P + L LK TG
Sbjct: 494 SFDDVMALIAAKRDIGLRLDVEQYVRPINFRPGAITFEAAPGAPGNLAGRLVRFLKEHTG 553
Query: 123 EDWEIRFSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVVCIRTI 162
+ W + G E + D + +V + FP A++V IR I
Sbjct: 554 QPWLVAAEGGGGAESLMERQKREEREALEAIKQDPFVASVLSAFPGAEIVEIRKI 608
>gi|16124522|ref|NP_419086.1| DNA polymerase III subunits gamma and tau [Caulobacter crescentus
CB15]
gi|13421402|gb|AAK22254.1| DNA polymerase III, gamma and tau subunits [Caulobacter crescentus
CB15]
Length = 608
Score = 97.0 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 15/115 (13%)
Query: 63 YTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTG 122
++ L D + +++++ ++F G + P + L LK TG
Sbjct: 479 SFDDVMALIAAKRDIGLRLDVEQYVRPINFRPGAITFEAAPGAPGNLAGRLVRFLKEHTG 538
Query: 123 EDWEIRFSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVVCIRTI 162
+ W + G E + D + +V + FP A++V IR I
Sbjct: 539 QPWLVAAEGGGGAESLMERQKREEREALEAIKQDPFVASVLSAFPGAEIVEIRKI 593
>gi|1293572|gb|AAB61695.1| DNA polymerase III tau homolog DnaX [Caulobacter crescentus CB15]
Length = 608
Score = 96.7 bits (239), Expect = 9e-19, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 15/115 (13%)
Query: 63 YTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTG 122
++ L D + +++++ ++F G + P + L LK TG
Sbjct: 479 SFDDVMALIAAKRDIGLRLDVEQYVRPINFRPGAITFEAAPGAPGNLAGRLVRFLKEHTG 538
Query: 123 EDWEIRFSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVVCIRTI 162
+ W + G E + D + +V + FP A++V IR I
Sbjct: 539 QPWLVAAEGGGGAESLMERQKREEREALEAIKQDPFVASVLSAFPGAEIVEIRKI 593
>gi|295691235|ref|YP_003594928.1| DNA polymerase III subunits gamma and tau [Caulobacter segnis ATCC
21756]
gi|295433138|gb|ADG12310.1| DNA polymerase III, subunits gamma and tau [Caulobacter segnis ATCC
21756]
Length = 616
Score = 95.5 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 42/115 (36%), Gaps = 15/115 (13%)
Query: 63 YTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTG 122
++ L D + +++++ ++F G + P + L LK TG
Sbjct: 487 SFDDVMALIAAKRDIGLRLDVEQYVRPINFRPGAITFEAAPGAPGNLAGRLVRFLKEHTG 546
Query: 123 EDWEIRFSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVVCIRTI 162
+ W + G E + D + +V + FP A++V IR +
Sbjct: 547 QPWLVAAEGGGGAESLMERQKREEREALEQIKKDPFVASVLSAFPGAEIVEIRKV 601
>gi|144898666|emb|CAM75530.1| DNA-directed DNA polymerase [Magnetospirillum gryphiswaldense
MSR-1]
Length = 586
Score = 94.0 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 16/116 (13%)
Query: 63 YTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTG 122
+++ L + + + L+ ++ V FE GR+E K P+D ++ L WTG
Sbjct: 448 SFAEVVALFSEKREGVLAVHLRNQVNPVKFEAGRIEFRPHKSAPQDLAPRVSRLLSEWTG 507
Query: 123 EDWEIR----------------FSLGRCCEYFEIDSDIKAVRTIFPTAQVVCIRTI 162
W + + + E ++AV FP A + +R +
Sbjct: 508 RRWTVTVNLTDPADPTLSEQEALAEHKRREDAANHPLVRAVLDAFPGAAIEIVRDL 563
>gi|294085056|ref|YP_003551816.1| replication factor C domain-containing protein [Candidatus
Puniceispirillum marinum IMCC1322]
gi|292664631|gb|ADE39732.1| replication factor C conserved domain:ATP/GTP-binding site motif A
[Candidatus Puniceispirillum marinum IMCC1322]
Length = 620
Score = 93.6 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 57/159 (35%), Gaps = 16/159 (10%)
Query: 20 SFAIGENALPRNISSDECFP-LAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYK 78
S A N ++ + P + + P N + L E +
Sbjct: 440 SGAPSTNVAIQHQPDQQTVPAQNTDADADAAPDRLAANDTPPLNTLADIATLAEDKGEML 499
Query: 79 MVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCC--- 135
+ +++ + +V+ + G LE++ + PE F+ +LA L++WTG W + S
Sbjct: 500 LAALIRNHVRLVALQPGLLEIALSGKPPEKFLGDLAQHLRHWTGARWLVSLSDETAGKTL 559
Query: 136 ------------EYFEIDSDIKAVRTIFPTAQVVCIRTI 162
+ + + ++FP A + I I
Sbjct: 560 AEAKADAAAVRLDTIAKTPLVAKIISVFPGATIEDISAI 598
>gi|148260992|ref|YP_001235119.1| DNA polymerase III subunits gamma and tau [Acidiphilium cryptum
JF-5]
gi|146402673|gb|ABQ31200.1| DNA polymerase III, subunits gamma and tau [Acidiphilium cryptum
JF-5]
Length = 614
Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 46/150 (30%), Gaps = 17/150 (11%)
Query: 26 NALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQR 85
NA+P + P A + + +I L + D + L+
Sbjct: 431 NAVPASAPGPA--PRAVVNGAPVAPAETAPATAPRLARFEDVIALAGEKRDALLYAHLRH 488
Query: 86 FLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYFEI----- 140
+V F +E++ E P D LA L+ TG W I S
Sbjct: 489 DARLVRFAPPVIELNLTPEAPRDLSSRLARFLEAETGRRWTIALSRAAGAPSMVEAETTA 548
Query: 141 ----------DSDIKAVRTIFPTAQVVCIR 160
++A+ FP A++ +
Sbjct: 549 RETARNEALDHPLVRAIFETFPGAKIASVE 578
>gi|167041262|gb|ABZ06018.1| putative ATPase family associated with various cellular activities
(AAA) [uncultured marine microorganism HF4000_005D21]
gi|167045767|gb|ABZ10413.1| putative ATPase family associated with various cellular activities
(AAA) [uncultured marine bacterium HF4000_APKG3108]
Length = 555
Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 44/86 (51%)
Query: 61 DNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNW 120
+ LI+L + + + L+ L+++ F ++++SF + + ++F+ NL+ KL W
Sbjct: 438 IKSFEDLIKLASEKKEIHLKHDLENNLNLIQFSERKIDMSFNENLDKNFVRNLSAKLFEW 497
Query: 121 TGEDWEIRFSLGRCCEYFEIDSDIKA 146
TG+ W I S + F +IK
Sbjct: 498 TGKRWVITLSKEKGQRTFSELKNIKK 523
>gi|297182623|gb|ADI18781.1| DNA polymerase III, gamma/tau subunits [uncultured SAR11 cluster
bacterium HF4000_37C10]
Length = 547
Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 44/86 (51%)
Query: 61 DNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNW 120
+ LI+L + + + L+ +++++ F ++++SF + + + F+ NL+ KL W
Sbjct: 430 IKSFEDLIKLASEKKEIHLKHNLENYVNLIQFSERKIDISFNENLDKSFVRNLSEKLLEW 489
Query: 121 TGEDWEIRFSLGRCCEYFEIDSDIKA 146
TG+ W I S + F +IK
Sbjct: 490 TGKRWVITLSKEKGQRTFSELKNIKK 515
>gi|288959353|ref|YP_003449694.1| DNA polymerase III subunit gamma/tau [Azospirillum sp. B510]
gi|288911661|dbj|BAI73150.1| DNA polymerase III subunit gamma/tau [Azospirillum sp. B510]
Length = 636
Score = 90.5 bits (223), Expect = 6e-17, Method: Composition-based stats.
Identities = 31/159 (19%), Positives = 60/159 (37%), Gaps = 18/159 (11%)
Query: 21 FAIGENALPRNISSDE--CFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYK 78
++ A+ R+I+S + P+A+ + P + + L++L +
Sbjct: 440 ASMATQAVARSIASAQPQSAPVAQTAPAPTPAPAGEELSPMPRD-FRALVQLFSDRREGA 498
Query: 79 MVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLG------ 132
+ L + +V E GRLE+ P + L WTG+ W + S G
Sbjct: 499 LYGYLMETVQLVRMEPGRLELKLRPAAPPTLPAKVGQFLGEWTGQRWIVALSDGPAQPTL 558
Query: 133 ---------RCCEYFEIDSDIKAVRTIFPTAQVVCIRTI 162
R E + ++AV F A+++ +R +
Sbjct: 559 AEQEQAERNRAWSEAEANPVVRAVLDAFSGAKIIDVRDL 597
>gi|326404392|ref|YP_004284474.1| DNA polymerase III gamma/tau subunit [Acidiphilium multivorum
AIU301]
gi|325051254|dbj|BAJ81592.1| DNA polymerase III gamma/tau subunit [Acidiphilium multivorum
AIU301]
Length = 614
Score = 88.6 bits (218), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 15/112 (13%)
Query: 64 TKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGE 123
+ +I L + D + L+ +V F +E++ E P D LA L+ TG
Sbjct: 467 FEDVIALAGEKRDALLYAHLRHDARLVRFAPPVIELNLTPEAPRDLSSRLARFLEAETGR 526
Query: 124 DWEIRFSLGRCCEYFEI---------------DSDIKAVRTIFPTAQVVCIR 160
W I S ++A+ FP A++ +
Sbjct: 527 RWTIALSRAAGAPSMVEAETTARETARNEALDHPLVRAIFETFPGAKIASVE 578
>gi|46204299|ref|ZP_00050200.2| COG2812: DNA polymerase III, gamma/tau subunits [Magnetospirillum
magnetotacticum MS-1]
Length = 451
Score = 83.6 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 31/78 (39%)
Query: 64 TKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGE 123
+ ++ E D + L+R +H+V FE GR+E + +LA L WTG
Sbjct: 297 FEDVVAQAEAARDIALKVALERDVHLVRFEEGRIEFRLAQGGRATLANDLARALDAWTGR 356
Query: 124 DWEIRFSLGRCCEYFEID 141
W + S +
Sbjct: 357 RWVVAVSKDEGAPTLAEN 374
>gi|23016072|ref|ZP_00055832.1| COG2812: DNA polymerase III, gamma/tau subunits [Magnetospirillum
magnetotacticum MS-1]
Length = 597
Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 45/140 (32%), Gaps = 17/140 (12%)
Query: 39 PLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLE 98
P + + P + ++ L + + + L+ ++ VSF GR+E
Sbjct: 430 PATALKLQPAPMAETVVLPAMPAD-FAAMVALFSERREGLIAVQLRTQVNPVSFAPGRIE 488
Query: 99 VSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCE----------------YFEIDS 142
+ D +A L WTG W + + +
Sbjct: 489 WRQNSSVGSDLAPKVARMLSEWTGRRWTVSVNSTDPAQPTLAEQEANAELRRRADAAEHP 548
Query: 143 DIKAVRTIFPTAQVVCIRTI 162
+KAV FP A + +R +
Sbjct: 549 LVKAVLAAFPGATIEAVRDL 568
>gi|83594802|ref|YP_428554.1| DNA polymerase III subunits gamma and tau [Rhodospirillum rubrum
ATCC 11170]
gi|83577716|gb|ABC24267.1| DNA-directed DNA polymerase [Rhodospirillum rubrum ATCC 11170]
Length = 659
Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 10/111 (9%)
Query: 63 YTKQLIELCEKNHDYKMVEMLQRFLHVVSFEL--GRLEVSFLKEIPEDFIENLATKLKNW 120
L++L + + + L R + +V ++ G LE+ L P + L W
Sbjct: 503 SFALLVDLFRRKREAVVTGHLYRDVELVGYDPEAGLLEIHPLPAAPAKLAGQITRLLGEW 562
Query: 121 TGEDWEIRFSL--------GRCCEYFEIDSDIKAVRTIFPTAQVVCIRTIP 163
TG W + + +KAV FP A + IR P
Sbjct: 563 TGRRWMVTLTDRPGQPTLHDATQADIHAHPLVKAVLDRFPGAVIGTIREHP 613
>gi|83859372|ref|ZP_00952893.1| DNA polymerase III subunits gamma and tau [Oceanicaulis alexandrii
HTCC2633]
gi|83852819|gb|EAP90672.1| DNA polymerase III subunits gamma and tau [Oceanicaulis alexandrii
HTCC2633]
Length = 586
Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 16/149 (10%)
Query: 27 ALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRF 86
A P ++ A + + LI L ++ D + ++R
Sbjct: 415 AAPSGGGANPSTGPGGAPSGPQASYVAPEPEFHGPKDLDALIALVDEARDIGLKLDIERC 474
Query: 87 LHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEI----------------RFS 130
VS + G + + P + +A L+ TGE W +
Sbjct: 475 FRPVSIKPGAIVFEPTQNAPSNLGGRIAAFLQEQTGERWLVDSKPKSKGGETIAERRERQ 534
Query: 131 LGRCCEYFEIDSDIKAVRTIFPTAQVVCI 159
+ D + T+FP A+++ +
Sbjct: 535 HEERMDAVRRDPAMVKALTLFPGAEILTV 563
>gi|83313202|ref|YP_423466.1| DNA polymerase III subunits gamma and tau [Magnetospirillum
magneticum AMB-1]
gi|82948043|dbj|BAE52907.1| DNA polymerase III, gamma/tau subunits [Magnetospirillum magneticum
AMB-1]
Length = 599
Score = 77.0 bits (188), Expect = 7e-13, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 17/140 (12%)
Query: 39 PLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLE 98
P + P + ++ L + + + L+ +++VSF GR+E
Sbjct: 432 PATALKLQPAPVAETVTLPAMPPD-FAAVVALFTERREGLIAVQLRTQVNLVSFAAGRIE 490
Query: 99 VSFLKEIPEDFIENLATKLKNWTGEDWEIRF--SLGRCCEYFEID--------------S 142
+ D A L WTG W + + E +
Sbjct: 491 WRQNSGVGSDLAPKTARLLSEWTGRRWTVSVNSTDSAQPTLAEQEANAELRRRADAAELP 550
Query: 143 DIKAVRTIFPTAQVVCIRTI 162
+KAV FP A + +R +
Sbjct: 551 LVKAVLAAFPGATIEAVRDL 570
>gi|114798398|ref|YP_759102.1| DNA polymerase III subunits gamma and tau [Hyphomonas neptunium
ATCC 15444]
gi|114738572|gb|ABI76697.1| DNA polymerase III, subunits gamma and tau [Hyphomonas neptunium
ATCC 15444]
Length = 578
Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 50/164 (30%), Gaps = 19/164 (11%)
Query: 16 LNVSSFAIGENALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNH 75
L +S R I+ P + + A +I +
Sbjct: 397 LAAASTLPSPEEAARMIAEGSRPPGKDNPPLKAPP-----QAPGGIESFADMIAIMVAAR 451
Query: 76 DYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRC- 134
+ + +RF+ FE G+L + P+ + L L+ ++ DW + +
Sbjct: 452 EVGLQVDTERFVRPSHFEPGKLACALAPGAPQGLLGRLKIFLETYSDLDWSVEEADTDTE 511
Query: 135 -------------CEYFEIDSDIKAVRTIFPTAQVVCIRTIPNL 165
E + D + A + P A ++ + P L
Sbjct: 512 SVRERERREKAERIESAKQDPRVAAALALIPGAIILDVEDPPEL 555
>gi|163795453|ref|ZP_02189420.1| DNA polymerase III, gamma/tau subunits [alpha proteobacterium
BAL199]
gi|159179439|gb|EDP63970.1| DNA polymerase III, gamma/tau subunits [alpha proteobacterium
BAL199]
Length = 610
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 54/160 (33%), Gaps = 24/160 (15%)
Query: 19 SSFAIGENALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYK 78
+S + P + P A+A E +D + A K L EL +
Sbjct: 428 ASPPAEPDGSPSYVMDG--PPPADAQ--EPEDARAEVPAT-----FKALAELFHARGEPV 478
Query: 79 MVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF 138
+ L +H VS+ GR+++ F +A L WTG+ W++R S
Sbjct: 479 LSAQLSGSVHCVSYAPGRIDIRPQNGTDPRFAAQIAAHLGRWTGQPWDVRISREDGEATL 538
Query: 139 E---------------IDSDIKAVRTIFPTAQVVCIRTIP 163
+ V +FP A++ + P
Sbjct: 539 REQAVTAKAEHFAKLAEHPVVSKVLELFPGARIEEVTAPP 578
>gi|114326925|ref|YP_744082.1| DNA polymerase III subunits gamma and tau [Granulibacter
bethesdensis CGDNIH1]
gi|114315099|gb|ABI61159.1| DNA polymerase III subunit gamma/tau [Granulibacter bethesdensis
CGDNIH1]
Length = 686
Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 20/134 (14%), Positives = 41/134 (30%), Gaps = 18/134 (13%)
Query: 41 AEAGITEKQDVLNRLSACTPD---NYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRL 97
+ A + + P + +++ + E + + L +H+V F +
Sbjct: 471 SGAATARQPHAMADSVPDVPVPVFHSFREVAQFVESRREAMLHAHLLHNVHLVRFAPPVI 530
Query: 98 EVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYFE---------------IDS 142
E+ +P LA L G+ W I S
Sbjct: 531 ELRLESNVPHTLPAQLAALLGEANGQRWTIALSSAPGEPTLAEQGRAAGESRLAQASNHP 590
Query: 143 DIKAVRTIFPTAQV 156
++A+ FP A++
Sbjct: 591 VVRAILNAFPGARL 604
>gi|321472924|gb|EFX83893.1| hypothetical protein DAPPUDRAFT_315316 [Daphnia pulex]
Length = 556
Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 23/177 (12%)
Query: 10 KKKLDALNVSSFAIGENALPRNISSDECFPLAEAGITEK------QDVLNRLSACTPDNY 63
++ + + V + P + P E ++ + ++ S
Sbjct: 380 QRAFEMVLVRLAYVTTLPTPDQLLKGAASPKKEIAVSPTIQIKLTPPLPSQASFSPLLQD 439
Query: 64 TKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGE 123
K LIE + + L + + +V+FE GRLE+S P D + L LK++TG
Sbjct: 440 FKGLIEAVIAKREGLLQTHLLQDIVLVTFEQGRLEISLKPGAPTDLPKRLQAFLKDYTGT 499
Query: 124 DWEI-----------RFSLGRC------CEYFEIDSDIKAVRTIFPTAQVVCIRTIP 163
W++ S + E ++ R FP + ++T+P
Sbjct: 500 SWKVILVPFSENLGPTLSEKKAEQERLIKEKVNAHPILEKARAFFPGVVLEEVKTLP 556
>gi|326385522|ref|ZP_08207161.1| DNA polymerase III subunits gamma and tau [Novosphingobium
nitrogenifigens DSM 19370]
gi|326210061|gb|EGD60839.1| DNA polymerase III subunits gamma and tau [Novosphingobium
nitrogenifigens DSM 19370]
Length = 622
Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 61/165 (36%), Gaps = 26/165 (15%)
Query: 11 KKLDALNVSSFAIGENALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIEL 70
+KL+ + V A+ + P +S E A +S+ + + ++ + L
Sbjct: 452 RKLETM-VREAAVQAASAPVAQASGEPVAGRAAPTM--------VSSISEEALLEEWVSL 502
Query: 71 CEK--NHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIR 128
EK + ++ + VV G L +P D ++ L+ TGE W++
Sbjct: 503 VEKVEHVSPLTGSTMRLAIRVVRLTPGYLAYELAPGVPGDPGPDIRRGLEAATGERWQVE 562
Query: 129 FSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVVC 158
S G+ + + +KAV FP A+++
Sbjct: 563 RSEGKGRPSLEEARAARVAAEEAAMQENPLVKAVLAAFPQARIID 607
>gi|329114766|ref|ZP_08243523.1| DNA polymerase III subunit Tau [Acetobacter pomorum DM001]
gi|326695897|gb|EGE47581.1| DNA polymerase III subunit Tau [Acetobacter pomorum DM001]
Length = 712
Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 54/162 (33%), Gaps = 16/162 (9%)
Query: 15 ALNVSSFAIGENALPRNISSDECFPLAEAGITEKQDVLNRLSACTPD-NYTKQLIELCEK 73
AL S + G P + S A + + P+ ++ + L +
Sbjct: 509 ALPTPSASAGHQPPPLRMVSGGQSVSAAVPVVAPVSAPSPEPQVFPNPRTWREAVALVKD 568
Query: 74 NHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGR 133
+ + L+ H+VSF G + + F + +P + L L TG W + S
Sbjct: 569 QKEAILHGQLRHAAHLVSFAPGHIVLRFEQHVPSGAAQELRKVLDRATGMSWRVGLSEEE 628
Query: 134 CCEYF---------------EIDSDIKAVRTIFPTAQVVCIR 160
E +KA+ FP A++ +R
Sbjct: 629 GEPTLDAQGAEIIQFRRKEAEAHPLVKAILKFFPDAELGEVR 670
>gi|296533586|ref|ZP_06896154.1| DNA polymerase III, gamma/tau subunit DnaX [Roseomonas cervicalis
ATCC 49957]
gi|296266094|gb|EFH12151.1| DNA polymerase III, gamma/tau subunit DnaX [Roseomonas cervicalis
ATCC 49957]
Length = 174
Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 38/113 (33%), Gaps = 16/113 (14%)
Query: 63 YTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTG 122
++++ L + L +H+V+F LGR+E P D L+ L TG
Sbjct: 22 SFREVVALASG-RAPMLHAHLLHSVHLVNFALGRIEFRQDPRAPRDLAAQLSALLAEQTG 80
Query: 123 EDWEIRFSLGRCCEYFEI---------------DSDIKAVRTIFPTAQVVCIR 160
W I S ++A+ FP AQ +R
Sbjct: 81 TRWTISLSNAEGEPTLAQQRSHIASERLEIAKSHPLVQAILLAFPGAQADALR 133
>gi|258541156|ref|YP_003186589.1| DNA polymerase III subunits gamma/tau [Acetobacter pasteurianus IFO
3283-01]
gi|256632234|dbj|BAH98209.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO
3283-01]
gi|256635291|dbj|BAI01260.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO
3283-03]
gi|256638346|dbj|BAI04308.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO
3283-07]
gi|256641400|dbj|BAI07355.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO
3283-22]
gi|256644455|dbj|BAI10403.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO
3283-26]
gi|256647510|dbj|BAI13451.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO
3283-32]
gi|256650563|dbj|BAI16497.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256653554|dbj|BAI19481.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO
3283-12]
Length = 657
Score = 63.9 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 15/110 (13%)
Query: 66 QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDW 125
+ + L + + + L+ H+VSF G + + F + +P + L L TG W
Sbjct: 506 EAVALVKDQKEAILHGQLRHAAHLVSFAPGHIVLRFEQHVPAGAAQELRKVLDRATGMSW 565
Query: 126 EIRFSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVVCIR 160
+ S E +KA+ FP A++ +R
Sbjct: 566 RVGLSEEEGEPTLDAQGAEIIQFRRKEAEAHPLVKAILKFFPDAELGEVR 615
>gi|58584691|ref|YP_198264.1| DNA polymerase III, gamma/tau subunit [Wolbachia endosymbiont
strain TRS of Brugia malayi]
gi|58419007|gb|AAW71022.1| DNA polymerase III, gamma/tau subunit [Wolbachia endosymbiont
strain TRS of Brugia malayi]
Length = 494
Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 57/135 (42%), Gaps = 4/135 (2%)
Query: 30 RNISSDE-CFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLH 88
++ S E A T++++ + + ++++L ++N+ + + L L
Sbjct: 357 SDLPSPEQVVKKVLAQSTQQRNTRSAENIQQKSYDFDKILQLLQQNNQIYLYKQLCSNLQ 416
Query: 89 VVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLG---RCCEYFEIDSDIK 145
+V+ + G L++ + ++ +F +L L T ++W I G + +K
Sbjct: 417 LVNCKPGYLKLKAVSQLDSNFCNDLKNYLSQITQQEWVITIDAGYIKKGASSLSYAPAVK 476
Query: 146 AVRTIFPTAQVVCIR 160
+ F A+VV I
Sbjct: 477 GILDTFKGAKVVNIE 491
>gi|111035803|emb|CAL29430.1| DNA polymerase III tau subunit [Wolbachia endosymbiont of
Onchocerca volvulus]
Length = 494
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/167 (19%), Positives = 67/167 (40%), Gaps = 11/167 (6%)
Query: 6 WKKRKKKLDALNVSS---FAIGENALP----RNISSDE-CFPLAEAGITEKQDVLNRLSA 57
WK K + A+ VSS A + ++ S E A T ++D+ N +
Sbjct: 326 WKVLLKGIQAIKVSSCNDIAAEMMLISLCYLSDLPSPEQVIKKILAQNTRQRDIYNIGNT 385
Query: 58 CTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKL 117
+ ++++L +++ + + L L +V + G L + + ++ +F +L L
Sbjct: 386 QQENYDFDKILQLLRQDNQVYLYKQLCNNLQLVDCKPGYLRLKAVSQLDSNFCNDLKNYL 445
Query: 118 KNWTGEDWEIRFSLG---RCCEYFEIDSDIKAVRTIFPTAQVVCIRT 161
T + W + +G R +K + F A++V I +
Sbjct: 446 DQVTQQQWLVTVDVGYINREISNLNHVPTVKGILDTFKGAKIVNIES 492
>gi|103486288|ref|YP_615849.1| DNA polymerase III subunits gamma and tau [Sphingopyxis alaskensis
RB2256]
gi|98976365|gb|ABF52516.1| DNA polymerase III, subunits gamma and tau [Sphingopyxis alaskensis
RB2256]
Length = 565
Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 18/113 (15%)
Query: 61 DNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNW 120
+L+E + ++ + L ++ E GRL + + + DF L L
Sbjct: 446 IAQIHRLLESTGHH---QLARQVYDDLRILELEPGRLVYAPVSALDGDFARRLGEALFGQ 502
Query: 121 TGEDWEIRF-------SLGRCCEYFEID--------SDIKAVRTIFPTAQVVC 158
TG W++R SL + D +KA FP A++V
Sbjct: 503 TGSRWQVREGTGEGRPSLAQMKAAQRADNEARIRELPVVKAALAAFPDARLVE 555
>gi|87199378|ref|YP_496635.1| DNA polymerase III subunits gamma and tau [Novosphingobium
aromaticivorans DSM 12444]
gi|87135059|gb|ABD25801.1| DNA polymerase III, subunits gamma and tau [Novosphingobium
aromaticivorans DSM 12444]
Length = 573
Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 15/87 (17%)
Query: 87 LHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYFE------- 139
+ +V + G L +P D ++ L + TGE W + + G E
Sbjct: 471 VRLVDLKPGLLRYQLAPGLPGDPAPDIRRALNHVTGEAWIVERAEGVAQPSLEEVKAAKA 530
Query: 140 --------IDSDIKAVRTIFPTAQVVC 158
D +KA FP A ++
Sbjct: 531 VAADAAMKEDPLVKAALEAFPGAVIID 557
>gi|254293230|ref|YP_003059253.1| DNA polymerase III subunits gamma and tau [Hirschia baltica ATCC
49814]
gi|254041761|gb|ACT58556.1| DNA polymerase III, subunits gamma and tau [Hirschia baltica ATCC
49814]
Length = 619
Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 38/128 (29%), Gaps = 14/128 (10%)
Query: 49 QDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPED 108
D + Q+ + + ++ ++ ++ G + IP D
Sbjct: 467 PDKYAEAAPGPVLGSLNQICAALQGDKQIHLLYDVEHYVRPAEVRYGLFTYAAAPGIPVD 526
Query: 109 FIENLATKLKNWTGEDWEIRFSLGRCCEYFEID--------------SDIKAVRTIFPTA 154
F + L++ TG +W + EI I + P A
Sbjct: 527 FQMRMKNWLEDKTGVEWNVDLGHSTKESLEEIRVRQEKERVAEVSAIPRIAEALELLPGA 586
Query: 155 QVVCIRTI 162
+VV I +
Sbjct: 587 KVVKIEKL 594
>gi|330993788|ref|ZP_08317720.1| DNA polymerase III subunit tau [Gluconacetobacter sp. SXCC-1]
gi|329759056|gb|EGG75568.1| DNA polymerase III subunit tau [Gluconacetobacter sp. SXCC-1]
Length = 690
Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 16/101 (15%)
Query: 75 HDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGE-DWEIRFSLGR 133
D + L+ H+VSF +E+ + L T L+ TG+ W++R S
Sbjct: 545 RDAMLHGHLRHATHLVSFAPPLIEIRVERNSLPGLARRLETLLREGTGDGTWQVRLSDAP 604
Query: 134 C---------------CEYFEIDSDIKAVRTIFPTAQVVCI 159
E ++A +FPTA++ +
Sbjct: 605 GEATLAEQGAEIIQLHRAAAEAHPLVQAAMQVFPTARLGEV 645
>gi|307292717|ref|ZP_07572563.1| DNA polymerase III, subunits gamma and tau [Sphingobium
chlorophenolicum L-1]
gi|306880783|gb|EFN11999.1| DNA polymerase III, subunits gamma and tau [Sphingobium
chlorophenolicum L-1]
Length = 538
Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 18/142 (12%)
Query: 34 SDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFE 93
D + G + N SA P + LIEL + ++ + L+ + +
Sbjct: 389 RDGAPAASVPGQAPQSAPSNAPSAQLP-ASFEDLIELLYRRGRGQLSQHLKDCAGLSHYA 447
Query: 94 LGRLEVSFLK--EIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYFEID---------- 141
LE+ DF A LK+ TG W++R + G
Sbjct: 448 PPLLEIRLTDPWHGEGDFFRETARALKDITGIHWQVRQAEGPVAPTLMEQENRQREDARA 507
Query: 142 -----SDIKAVRTIFPTAQVVC 158
+KA FP A++
Sbjct: 508 AIMETPVVKAALAAFPDAELSD 529
>gi|24475504|dbj|BAC22717.1| dnaX [Wolbachia endosymbiont of Callosobruchus chinensis]
Length = 516
Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 53/135 (39%), Gaps = 4/135 (2%)
Query: 30 RNISSDECFPLAEAGITEKQDVLNRLSACTPDNY-TKQLIELCEKNHDYKMVEMLQRFLH 88
++ S E +Q + + NY ++++L +++ + + L L
Sbjct: 379 SDLPSPEQVVKKILSQNAQQGNTHSIGNGQQQNYDFDKVLQLLRRSNQIYLYKQLCNNLQ 438
Query: 89 VVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLG---RCCEYFEIDSDIK 145
++ + G L++ + ++ +F +L L T ++W I G R +K
Sbjct: 439 LIDCKPGYLKLKAVSKLDSNFCNDLKNYLNQVTQQEWVITVDTGYINREVSNLNYAPAVK 498
Query: 146 AVRTIFPTAQVVCIR 160
+ F A+VV I
Sbjct: 499 DILDTFKGAKVVNIE 513
>gi|294012157|ref|YP_003545617.1| DNA polymerase III gamma and tau subunit [Sphingobium japonicum
UT26S]
gi|292675487|dbj|BAI97005.1| DNA polymerase III gamma and tau subunit [Sphingobium japonicum
UT26S]
Length = 536
Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 15/111 (13%)
Query: 63 YTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTG 122
++LIE + ++ + L + VV + L+ + +P DF+ L L+ TG
Sbjct: 417 SFEELIEAFWQRGKGQLAQELHDCIGVVRYAAPELDYAPTPSLPSDFLARLTPALREVTG 476
Query: 123 EDWEIRFSLGRCCEYFEID---------------SDIKAVRTIFPTAQVVC 158
W + G +KA FP A++
Sbjct: 477 TAWRVNAVDGPAAPTLLEQEMRKAADARAEIMETPVVKAALAAFPDAELGD 527
>gi|289610813|emb|CBI60172.1| unnamed protein product [Sordaria macrospora]
Length = 88
Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 30/65 (46%)
Query: 63 YTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTG 122
+Q++ L K+ + + + ++ E +E+S + +P DF +L LK TG
Sbjct: 23 TMEQVVNLLAKHGRHSLEAQFRNCARMIRLEPNLIELSGSRPLPADFARDLENALKGITG 82
Query: 123 EDWEI 127
W +
Sbjct: 83 SHWRV 87
>gi|225630794|ref|YP_002727585.1| DNA polymerase III, gamma/tau subunit [Wolbachia sp. wRi]
gi|225592775|gb|ACN95794.1| DNA polymerase III, gamma/tau subunit [Wolbachia sp. wRi]
Length = 533
Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 53/135 (39%), Gaps = 6/135 (4%)
Query: 29 PRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLH 88
P+ + P + + +D + + ++++L +++ + + L L
Sbjct: 399 PKKYVESKQQPHS---VIPVRDTGIHVENKQQNYDFDKILQLLRRSNQIYLYKQLCNNLQ 455
Query: 89 VVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLG---RCCEYFEIDSDIK 145
++ + G L++ + ++ +F +L L T ++W I G R +K
Sbjct: 456 LIDCKPGYLKLKAVSKLDSNFCNDLKNYLNQVTQQEWVIAVDTGYINREVSNLNYAPAVK 515
Query: 146 AVRTIFPTAQVVCIR 160
+ F A+VV I
Sbjct: 516 DILDTFKGAKVVNIE 530
>gi|58039074|ref|YP_191038.1| DNA polymerase III subunits gamma and tau [Gluconobacter oxydans
621H]
gi|58001488|gb|AAW60382.1| DNA polymerase III subunit gamma/tau [Gluconobacter oxydans 621H]
Length = 652
Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/109 (12%), Positives = 36/109 (33%), Gaps = 16/109 (14%)
Query: 66 QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDW 125
+++ + + + + +L+ +H+V F +++ +E L L W
Sbjct: 500 EMVAMVAREREPVLHGLLRNAVHLVRFSPPDVQIR-AEEPQARIERQLQKLLDRVYPGQW 558
Query: 126 EIRFSLGRCCEYF---------------EIDSDIKAVRTIFPTAQVVCI 159
+ S E ++A+ FP A++ +
Sbjct: 559 RVSASTAPGEPTLDEQGAEVVALNQASVEQHPLVQAILKTFPGAKIGEV 607
>gi|42520868|ref|NP_966783.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont
of Drosophila melanogaster]
gi|42410608|gb|AAS14717.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont
of Drosophila melanogaster]
Length = 533
Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 53/135 (39%), Gaps = 6/135 (4%)
Query: 29 PRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLH 88
P+ + P + + +D + + ++++L +++ + + L L
Sbjct: 399 PKKYVESKQQPHS---VIPVRDTGIHVENKQQNYDFDKILQLLRRSNQIYLYKQLCNNLQ 455
Query: 89 VVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLG---RCCEYFEIDSDIK 145
++ + G L++ + ++ +F +L L T ++W + G R +K
Sbjct: 456 LIDCKPGYLKLKAVSKLDSNFCNDLKNYLNQVTQQEWVVAVDTGYINREVSNLNYAPAVK 515
Query: 146 AVRTIFPTAQVVCIR 160
+ F A+VV I
Sbjct: 516 DILDTFKGAKVVNIE 530
>gi|209545026|ref|YP_002277255.1| DNA polymerase III subunits gamma and tau [Gluconacetobacter
diazotrophicus PAl 5]
gi|209532703|gb|ACI52640.1| DNA polymerase III, subunits gamma and tau [Gluconacetobacter
diazotrophicus PAl 5]
Length = 687
Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 15/95 (15%)
Query: 75 HDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRC 134
D + L+ H+V F R+ + + L T L+ TG+ WE+R S
Sbjct: 543 RDAMLHGHLRHSTHLVEFAPPRIAIRVDRAGLPGLTRRLETLLRRETGQAWEVRASTEAG 602
Query: 135 CEYF---------------EIDSDIKAVRTIFPTA 154
E ++A+ FP A
Sbjct: 603 QPTLAEQGAEIIQFHRAAAEAHPLVRAIFARFPDA 637
>gi|162149236|ref|YP_001603697.1| DNA polymerase III subunits gamma and tau [Gluconacetobacter
diazotrophicus PAl 5]
gi|161787813|emb|CAP57411.1| putative DNA polymerase III tau subunit [Gluconacetobacter
diazotrophicus PAl 5]
Length = 629
Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 15/95 (15%)
Query: 75 HDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRC 134
D + L+ H+V F R+ + + L T L+ TG+ WE+R S
Sbjct: 485 RDAMLHGHLRHSTHLVEFAPPRIAIRVDRAGLPGLTRRLETLLRRETGQAWEVRASTEAG 544
Query: 135 CEYF---------------EIDSDIKAVRTIFPTA 154
E ++A+ FP A
Sbjct: 545 QPTLAEQGAEIIQFHRAAAEAHPLVRAIFARFPDA 579
>gi|99034677|ref|ZP_01314618.1| hypothetical protein Wendoof_01000560 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 223
Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 53/135 (39%), Gaps = 6/135 (4%)
Query: 29 PRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLH 88
P+ + P + + +D + + ++++L +++ + + L L
Sbjct: 89 PKKYVESKQQPHS---VIPVRDTGIHVENKQQNYDFDKILQLLRRSNQIYLYKQLCNNLQ 145
Query: 89 VVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLG---RCCEYFEIDSDIK 145
++ + G L++ + ++ +F +L L T ++W + G R +K
Sbjct: 146 LIDCKPGYLKLKAVSKLDSNFCNDLKNYLNQVTQQEWVVAVDTGYINREVSNLNYAPAVK 205
Query: 146 AVRTIFPTAQVVCIR 160
+ F A+VV I
Sbjct: 206 DILDTFKGAKVVNIE 220
>gi|58699590|ref|ZP_00374291.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont
of Drosophila ananassae]
gi|58533894|gb|EAL58192.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont
of Drosophila ananassae]
Length = 269
Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 53/135 (39%), Gaps = 6/135 (4%)
Query: 29 PRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLH 88
P+ + P + + +D + + ++++L +++ + + L L
Sbjct: 135 PKKYVESKQQPHS---VIPVRDTGIHVENKQQNYDFDKILQLLRRSNQIYLYKQLCNNLQ 191
Query: 89 VVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLG---RCCEYFEIDSDIK 145
++ + G L++ + ++ +F +L L T ++W I G R +K
Sbjct: 192 LIDCKPGYLKLKAVSKLDSNFCNDLKNYLNQVTQQEWVIAVDTGYINREVSNLNYAPAVK 251
Query: 146 AVRTIFPTAQVVCIR 160
+ F A+VV I
Sbjct: 252 DILDTFKGAKVVNIE 266
>gi|73667555|ref|YP_303571.1| DNA-directed DNA polymerase [Ehrlichia canis str. Jake]
gi|72394696|gb|AAZ68973.1| DNA-directed DNA polymerase [Ehrlichia canis str. Jake]
Length = 491
Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 8/112 (7%)
Query: 59 TPDNYTKQLIELCEKNHDYKMVEML-QRFLHVVSFELGRLEVSFLKEIPEDFIENLATKL 117
DNY ++L+EL + N+ + + + L + ++ G L + + +D +L+ L
Sbjct: 376 KSDNYKEELLELLKVNNMQDLYNQIYESDLEITNYNDGILNIKANNTLSKDLHNDLSNFL 435
Query: 118 KNWTGEDWEIRFS-------LGRCCEYFEIDSDIKAVRTIFPTAQVVCIRTI 162
+ T + W I C +S + + F A+VV I I
Sbjct: 436 NSSTNKKWNISIEQNFNINKNSNTCYNQSFNSTVCNILQEFDGAKVVNIENI 487
>gi|225629565|ref|ZP_03787596.1| DNA polymerase III, gamma/tau subunit [Wolbachia endosymbiont of
Muscidifurax uniraptor]
gi|225591580|gb|EEH12589.1| DNA polymerase III, gamma/tau subunit [Wolbachia endosymbiont of
Muscidifurax uniraptor]
Length = 247
Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Query: 64 TKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGE 123
++++L +++ + + L L ++ + G L++ + ++ +F +L L T +
Sbjct: 145 FDKILQLLRRSNQIYLYKQLCNNLQLIDCKPGYLKLKAVSKLDSNFCNDLKNYLSQVTQQ 204
Query: 124 DWEIRFSLG---RCCEYFEIDSDIKAVRTIFPTAQVVCIR 160
+W I G R +K + F A+VV I
Sbjct: 205 EWVIAVDTGYINREVSNLNYAPAVKDILDTFKGAKVVNIE 244
>gi|296116792|ref|ZP_06835398.1| DNA polymerase III subunits gamma and tau [Gluconacetobacter
hansenii ATCC 23769]
gi|295976593|gb|EFG83365.1| DNA polymerase III subunits gamma and tau [Gluconacetobacter
hansenii ATCC 23769]
Length = 690
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 21/144 (14%)
Query: 32 ISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVS 91
+++D P+ A T + A ++++ D + L+ H+V+
Sbjct: 509 VAADPADPMTAAPATPVP----AIPAAPQLRTWREVVAFVSG-RDAMLHGHLRHSTHLVA 563
Query: 92 FELGRLEVSFLKEIPEDFIENLATKLKNWTGE-DWEIRFSLGRCCEYF------------ 138
F + + L T L+ TG+ W+IR
Sbjct: 564 FAAPEIRIRVEAAAMAGLARRLETLLRAETGDPSWKIRTCEDEGEATLAEQGAEIIQLHR 623
Query: 139 ---EIDSDIKAVRTIFPTAQVVCI 159
+KAV FP+A++ +
Sbjct: 624 ADAASHPLVKAVMAAFPSARLGQV 647
>gi|58699392|ref|ZP_00374154.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont
of Drosophila ananassae]
gi|58534090|gb|EAL58327.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont
of Drosophila ananassae]
Length = 99
Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 68 IELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEI 127
++L +++ + + L L ++ + G L++ + ++ +F +L L T ++W I
Sbjct: 1 MQLLRRSNQIYLYKQLCNNLQLIDCKPGYLKLKAVSKLDSNFCNDLKNYLNQVTQQEWVI 60
Query: 128 RFSLG---RCCEYFEIDSDIKAVRTIFPTAQVVCIR 160
G R +K + F A+VV I
Sbjct: 61 AVDTGYINREVSNLNYAPAVKDILDTFKGAKVVNIE 96
>gi|94497479|ref|ZP_01304049.1| DNA polymerase III, subunits gamma and tau [Sphingomonas sp. SKA58]
gi|94423110|gb|EAT08141.1| DNA polymerase III, subunits gamma and tau [Sphingomonas sp. SKA58]
Length = 538
Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 15/108 (13%)
Query: 66 QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDW 125
LIE + ++ + L + V+ + + + ++P DF+ L L+ TG W
Sbjct: 422 DLIEAFWQGGKGQLAQELHDCVGVIRYAPPQFDYRPTPQLPADFLARLLPALREVTGTAW 481
Query: 126 EI---------RFSLGRCCEYFEID------SDIKAVRTIFPTAQVVC 158
++ + + +KA FP A++
Sbjct: 482 QVAAGEGPAEPTLLEQEQRQAADTRARILETPVVKAAMAAFPDAELDD 529
>gi|190571334|ref|YP_001975692.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont
of Culex quinquefasciatus Pel]
gi|213018730|ref|ZP_03334538.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont
of Culex quinquefasciatus JHB]
gi|190357606|emb|CAQ55047.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont
of Culex quinquefasciatus Pel]
gi|212995681|gb|EEB56321.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont
of Culex quinquefasciatus JHB]
Length = 527
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 47/119 (39%), Gaps = 3/119 (2%)
Query: 45 ITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKE 104
+ +D + + ++++L +++ + + L L ++ + G L++ +
Sbjct: 406 VIPVRDTGIHVKNKQQNYDFDKILQLLRRSNQIYLYKQLCSNLKLIDCKFGYLKLKAVSN 465
Query: 105 IPEDFIENLATKLKNWTGEDWEIRFSLG---RCCEYFEIDSDIKAVRTIFPTAQVVCIR 160
+ +F +L + L T ++W I R +K + F A+VV I
Sbjct: 466 LNSNFCNDLKSYLNQATNQEWVIIVDTSYMNREVSNLNYAPVVKDILNTFKGAKVVNIE 524
>gi|241762403|ref|ZP_04760482.1| DNA polymerase III, subunits gamma and tau [Zymomonas mobilis
subsp. mobilis ATCC 10988]
gi|241373090|gb|EER62739.1| DNA polymerase III, subunits gamma and tau [Zymomonas mobilis
subsp. mobilis ATCC 10988]
Length = 628
Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 31/156 (19%), Positives = 57/156 (36%), Gaps = 19/156 (12%)
Query: 19 SSFAIGENALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYK 78
S + + N + ++ P A I + + PD K L E+ N
Sbjct: 472 SGYPVEGNQKFSELPENQPRPSA-IPIAPASEAKLKNPHFPPD--FKSLTEMLFDNGHAL 528
Query: 79 MVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGR--CCE 136
+ L+ + ++ + RL + I + + L+ LKN TG+ W++ F R
Sbjct: 529 LGHSLEDYGRLIEYNPPRLLLENHSRISGETRQELSLALKNLTGQAWQVEFLQDRKGQPS 588
Query: 137 YFEID--------------SDIKAVRTIFPTAQVVC 158
+ E + ++AV FP A+ V
Sbjct: 589 FREAEIAQKEARQKAILNTPIVQAVLKTFPDAEWVQ 624
>gi|218660624|ref|ZP_03516554.1| DNA polymerase III subunits gamma and tau [Rhizobium etli IE4771]
Length = 97
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 15/52 (28%)
Query: 124 DWEIRFSLGRCCEY---------------FEIDSDIKAVRTIFPTAQVVCIR 160
W + S D D+ A+ FP A+++ +R
Sbjct: 12 HWIVSTSREEGGPTMVEAEAKAQQQRVSDARQDPDVAAILAQFPGAKIIDVR 63
>gi|85708099|ref|ZP_01039165.1| DNA polymerase III subunits gamma and tau [Erythrobacter sp. NAP1]
gi|85689633|gb|EAQ29636.1| DNA polymerase III subunits gamma and tau [Erythrobacter sp. NAP1]
Length = 601
Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 36/139 (25%), Gaps = 18/139 (12%)
Query: 35 DECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFEL 94
+ + A I+ + +M ++ + V+
Sbjct: 450 SAAPAETGGESAPAPTASSSVYASFEWGALVDQIDNAGQLRVAQM---MRDRIRVIELAP 506
Query: 95 GRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYF---------------E 139
+L +D ++ L TG+ W + G
Sbjct: 507 EKLIFEQADNYSDDPAPDIRDALFKLTGKRWLVERGSGDAQPSLREAADAEAQATQDRIR 566
Query: 140 IDSDIKAVRTIFPTAQVVC 158
+ +KA FP A++V
Sbjct: 567 ANPLVKAAFEAFPDAELVD 585
>gi|161611320|ref|YP_162596.2| DNA polymerase III subunits gamma and tau [Zymomonas mobilis subsp.
mobilis ZM4]
gi|283775348|gb|AAV89485.2| DNA polymerase III, subunits gamma and tau [Zymomonas mobilis
subsp. mobilis ZM4]
Length = 628
Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 56/156 (35%), Gaps = 19/156 (12%)
Query: 19 SSFAIGENALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYK 78
S + + N + ++ P A I + + PD K L E+ N
Sbjct: 472 SDYPVEGNQKFSELPENQPRPSA-IPIAPASEAKLKNPHFPPD--FKSLTEMLFDNGHAL 528
Query: 79 MVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGR--CCE 136
+ L+ + ++ + RL + I + + L+ LKN T + W++ F R
Sbjct: 529 LGHSLEDYGRLIEYNPPRLLLENHSRISGETRQELSLALKNLTKQAWQVEFLQDRKGQPS 588
Query: 137 YFEID--------------SDIKAVRTIFPTAQVVC 158
+ E + ++AV FP A+ V
Sbjct: 589 FREAEIAQKEARQKAILNTPIVQAVLKTFPDAEWVQ 624
>gi|6466222|gb|AAF12838.1|AF203881_11 DNA polymerase III subunits tau and gamma [Zymomonas mobilis subsp.
mobilis ZM4]
Length = 597
Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 56/156 (35%), Gaps = 19/156 (12%)
Query: 19 SSFAIGENALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYK 78
S + + N + ++ P A I + + PD K L E+ N
Sbjct: 441 SDYPVEGNQKFSELPENQPRPSA-IPIAPASEAKLKNPHFPPD--FKSLTEMLFDNGHAL 497
Query: 79 MVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGR--CCE 136
+ L+ + ++ + RL + I + + L+ LKN T + W++ F R
Sbjct: 498 LGHSLEDYGRLIEYNPPRLLLENHSRISGETRQELSLALKNLTKQAWQVEFLQDRKGQPS 557
Query: 137 YFEID--------------SDIKAVRTIFPTAQVVC 158
+ E + ++AV FP A+ V
Sbjct: 558 FREAEIAQKEARQKAILNTPIVQAVLKTFPDAEWVQ 593
>gi|296284716|ref|ZP_06862714.1| DNA polymerase III subunits gamma and tau [Citromicrobium
bathyomarinum JL354]
Length = 606
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 16/88 (18%)
Query: 87 LHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCC----------- 135
L VVS E G L + E + L L TG W +
Sbjct: 502 LRVVSLEDGALTFARAPEFRDKIETELRAALAKATGRSWVLTEVEDPAAPPSMAESAQAE 561
Query: 136 -----EYFEIDSDIKAVRTIFPTAQVVC 158
+ E ++A R FP A+++
Sbjct: 562 AAALRDAMEAHPLMQAARAAFPQAELLD 589
>gi|260752672|ref|YP_003225565.1| DNA polymerase III subunits gamma/tau [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|258552035|gb|ACV74981.1| DNA polymerase III, subunits gamma and tau [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
Length = 628
Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 23/149 (15%)
Query: 26 NALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQR 85
+ LP N P+A +L K L E+ N + L+
Sbjct: 483 SELPENQPRPSAIPIA-------PASEAKLKNPHFPPDFKSLTEMLFDNGHALLGHSLED 535
Query: 86 FLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGR--CCEYFEID-- 141
+ ++ + RL + I + + L+ LKN T + W++ F R + E +
Sbjct: 536 YGRLIEYNPPRLLLENHSRISGETRQELSLALKNLTKQAWQVEFLQDRKGQPSFREAEIA 595
Query: 142 ------------SDIKAVRTIFPTAQVVC 158
++AV FP A+ V
Sbjct: 596 QKEARQKAILNTPIVQAVLKTFPDAEWVQ 624
>gi|148552984|ref|YP_001260566.1| DNA polymerase III subunits gamma and tau [Sphingomonas wittichii
RW1]
gi|148498174|gb|ABQ66428.1| DNA polymerase III, subunits gamma and tau [Sphingomonas wittichii
RW1]
Length = 582
Score = 41.6 bits (96), Expect = 0.033, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 15/85 (17%)
Query: 89 VVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIR----------FSLGRCCEYF 138
+V E L ++ + +P++F ++A LK TG W + + R E
Sbjct: 487 IVRLEGEELLIARHQRLPQNFAGDVANILKRSTGRTWSVAMVDEAGAPSLLARIRAEEDA 546
Query: 139 EID-----SDIKAVRTIFPTAQVVC 158
D +KA FP A+++
Sbjct: 547 ARDAILESPLVKAALEAFPDAELID 571
>gi|242051220|ref|XP_002463354.1| hypothetical protein SORBIDRAFT_02g042270 [Sorghum bicolor]
gi|241926731|gb|EER99875.1| hypothetical protein SORBIDRAFT_02g042270 [Sorghum bicolor]
Length = 406
Score = 40.8 bits (94), Expect = 0.055, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 7/114 (6%)
Query: 33 SSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSF 92
+SD P A + +K P+ + +I+ C D K++ + + L V
Sbjct: 94 ASDMDHPTAAEEMYQKMLKSVEAKTMPPNAWLWSMIDSCSNKEDIKLLFQILQKLRVFRL 153
Query: 93 ELGRLEVSFLKEIPEDFIENLATK------LKN-WTGEDWEIRFSLGRCCEYFE 139
R+ +F + + E A LK WT + I ++G +
Sbjct: 154 SNLRISANFNENLCRKVTEACARAGAIEYGLKALWTHNVYGITPTIGSAHYLLQ 207
>gi|296333354|ref|ZP_06875807.1| membrane endopeptidase [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305675141|ref|YP_003866813.1| membrane endopeptidase [Bacillus subtilis subsp. spizizenii str.
W23]
gi|296149552|gb|EFG90448.1| membrane endopeptidase [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305413385|gb|ADM38504.1| membrane endopeptidase [Bacillus subtilis subsp. spizizenii str.
W23]
Length = 506
Score = 38.5 bits (88), Expect = 0.35, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 42/121 (34%), Gaps = 19/121 (15%)
Query: 52 LNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRF-------LHVVSFELGR-----LEV 99
+ + PD + L+ L HD + ++R + V +LGR L V
Sbjct: 28 SDEIWLEAPDKSSHDLVRL--YKHDLDFRQEIERDIEEQAERVERVRKQLGRRKMKLLNV 85
Query: 100 SFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRCCEYFEIDSDIKAVRTIFPTAQVVCI 159
F E P D E +A K + + D D++AV FP +
Sbjct: 86 FFSAEAPVDDWEEIAEKPFE----NGTVSVEPAIVRGTMLCD-DLQAVFPSFPAEECTEA 140
Query: 160 R 160
R
Sbjct: 141 R 141
>gi|332185894|ref|ZP_08387641.1| DNA polymerase III, subunits gamma and tau [Sphingomonas sp. S17]
gi|332014252|gb|EGI56310.1| DNA polymerase III, subunits gamma and tau [Sphingomonas sp. S17]
Length = 559
Score = 38.1 bits (87), Expect = 0.43, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 15/112 (13%)
Query: 62 NYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWT 121
+ +I+ + + L+ +V + + S + I D + L + LK T
Sbjct: 438 DSFVAMIDRLDDMGQLALAARLRHGARLVRYTPPEMVFSGSRPIAADTLSELVSALKTAT 497
Query: 122 GEDWEIRF--------------SLGRCCEYFEIDSD-IKAVRTIFPTAQVVC 158
G+ W I + + +SD ++A R FP A+++
Sbjct: 498 GQIWRITLEDVPGEPTLHEQQVAAEEAIKTAAWESDMVRAAREAFPEAELME 549
>gi|294506978|ref|YP_003571036.1| DNA primase [Salinibacter ruber M8]
gi|294343306|emb|CBH24084.1| DNA primase [Salinibacter ruber M8]
Length = 655
Score = 37.3 bits (85), Expect = 0.65, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 2/84 (2%)
Query: 39 PLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLE 98
P E ++ + + T L + ML+ +VS LG +
Sbjct: 461 PSGEQAAPPDRNGASPPPPNSTTGKTASGPALLPEER-VLFRLMLENGRRMVSLVLGHMA 519
Query: 99 V-SFLKEIPEDFIENLATKLKNWT 121
+ F + P DF LA ++ T
Sbjct: 520 LDEFSEGAPRDFARALAEMYEDGT 543
>gi|88799555|ref|ZP_01115131.1| Hypothetical 1041 kDa protein in hypE 3'region [Reinekea sp.
MED297]
gi|88777640|gb|EAR08839.1| Hypothetical 1041 kDa protein in hypE 3'region [Reinekea sp.
MED297]
Length = 558
Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 17/119 (14%)
Query: 30 RNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIE---------------LCEKN 74
++ P A + E + ++N L+A + + L ++
Sbjct: 334 KSPVHGVVPPSAFIPLAESRGLINALTARQFEIIRQDLANSKGHKLFIPIIAVNVAAQQI 393
Query: 75 HDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGR 133
D ML F V +LEV + I+ L +L+NW IR ++
Sbjct: 394 SDPVFERMLLDFARDVRTSGWQLEVELTESQLMTQIDGLHERLQNW--RRRGIRIAIDD 450
>gi|298247291|ref|ZP_06971096.1| ATPase, P-type (transporting), HAD superfamily, subfamily IC
[Ktedonobacter racemifer DSM 44963]
gi|297549950|gb|EFH83816.1| ATPase, P-type (transporting), HAD superfamily, subfamily IC
[Ktedonobacter racemifer DSM 44963]
Length = 1604
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 13/153 (8%)
Query: 1 LHAISWKKRKKKLDALNVSSFAIGENALPRNISSDECFPLAEAGITEKQDVLNRLSACTP 60
+H W K+++++ + G + N + +A +T++Q +L +S
Sbjct: 23 VHLPGWSKQERRVAKTRLRQMQ-GVQRVQDNELTGNVLIQFDATVTDEQTILEAVSQLEL 81
Query: 61 DNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNW 120
++E E + + +R +V R+ V L+ P + + KL +
Sbjct: 82 AQI--HIVEAQEAA--PRSHAVTERRGRLVRT---RIPVRGLERDP-SLAQRVLEKLTEF 133
Query: 121 TGEDWEIRFSLGRCCEYFEID----SDIKAVRT 149
G E+ GR FE DI A T
Sbjct: 134 PGIRAEVSLLTGRVLVEFEEHQAELDDILAAMT 166
>gi|304311497|ref|YP_003811095.1| NADH dehydrogenase I, chain CD [gamma proteobacterium HdN1]
gi|301797230|emb|CBL45450.1| NADH dehydrogenase I, chain CD [gamma proteobacterium HdN1]
Length = 600
Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 8/80 (10%)
Query: 72 EKNHDYKMVEMLQRFLHVVSFELG---RLEVSFLKEIPEDFIENLATKLKNWTGEDWEIR 128
++ + + F H+VS E R++V+ + D NL T + W +W R
Sbjct: 86 RQHREGQPKSDFTVFYHLVSIERNSDVRIKVALSES---DL--NLPTIISIWPNANWYER 140
Query: 129 FSLGRCCEYFEIDSDIKAVR 148
FE ++ +
Sbjct: 141 EVFDLFGIKFEGHPHMQRIL 160
>gi|51474034|ref|YP_067790.1| DNA polymerase III subunits gamma and tau [Rickettsia typhi str.
Wilmington]
gi|51460346|gb|AAU04309.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str.
Wilmington]
Length = 507
Score = 36.2 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 40/118 (33%), Gaps = 9/118 (7%)
Query: 50 DVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDF 109
+++N ++ N +E KN++ + L + RLE ++
Sbjct: 385 NIMNADNSGIKKNEILDFLEYLYKNNEIDIYYFLLNHTELKKLSDNRLEF-CSLKVTNKI 443
Query: 110 IENLATKLKNWTGEDWEIRFSLGRCCEYF--------EIDSDIKAVRTIFPTAQVVCI 159
+ + L +T E E + + E +D ++ FP ++ I
Sbjct: 444 KKQIEDLLTAFTKEKPEFIVIKEQNKQTLKGQLINKIETSNDFSLIKKHFPNVKITDI 501
>gi|189220310|ref|YP_001940950.1| Nucleotidyltransferase/DNA polymerase UmuC [Methylacidiphilum
infernorum V4]
gi|189187168|gb|ACD84353.1| Nucleotidyltransferase/DNA polymerase UmuC [Methylacidiphilum
infernorum V4]
Length = 421
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 75 HDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLGRC 134
+++E + + S + +++S PE F L K++ WTG + +
Sbjct: 88 RLMQLLEESAPCVEIYSIDEAWIDLSAHPS-PESFARELREKIRRWTGI--PVTLGIAPT 144
Query: 135 CEYFEIDSDIKA 146
++ S I
Sbjct: 145 KTLAKVASKIAK 156
>gi|198275203|ref|ZP_03207734.1| hypothetical protein BACPLE_01362 [Bacteroides plebeius DSM 17135]
gi|198271786|gb|EDY96056.1| hypothetical protein BACPLE_01362 [Bacteroides plebeius DSM 17135]
Length = 1121
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 11/60 (18%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 49 QDVLNRLSACTPDNYTKQLIELCEKN-HDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPE 107
+ L+ L+A +P+N +++ + D K+ + ++ +VS++ + E+ + E +
Sbjct: 407 KIYLDALTAVSPENSYTEIVACDTQKMEDLKLTVLDEKGKVLVSYQAAKPEIRPIPEPAK 466
>gi|162007986|ref|YP_457625.2| DNA polymerase III subunits gamma and tau [Erythrobacter litoralis
HTCC2594]
Length = 575
Score = 35.8 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 16/87 (18%)
Query: 87 LHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRF--------SLGRCCEYF 138
L V+ E RL S E+ L L TG+ W++ SL E
Sbjct: 473 LRVIECEERRLVFSRASSYTEEIAPQLREALLAATGQRWQLEERDWVDAPPSLMEQAEAR 532
Query: 139 EI--------DSDIKAVRTIFPTAQVV 157
E + A +T FP A+++
Sbjct: 533 EEEKKARIDGHPLVAATKTAFPDAEII 559
>gi|84786646|gb|ABC62828.1| DNA polymerase III tau subunit [Erythrobacter litoralis HTCC2594]
Length = 521
Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 16/87 (18%)
Query: 87 LHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRF--------SLGRCCEYF 138
L V+ E RL S E+ L L TG+ W++ SL E
Sbjct: 419 LRVIECEERRLVFSRASSYTEEIAPQLREALLAATGQRWQLEERDWVDAPPSLMEQAEAR 478
Query: 139 EI--------DSDIKAVRTIFPTAQVV 157
E + A +T FP A+++
Sbjct: 479 EEEKKARIDGHPLVAATKTAFPDAEII 505
>gi|83814662|ref|YP_445102.1| DNA primase [Salinibacter ruber DSM 13855]
gi|83756056|gb|ABC44169.1| DNA primase [Salinibacter ruber DSM 13855]
Length = 655
Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 2/98 (2%)
Query: 25 ENALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQ 84
E + + + P E ++ + + T L + ML+
Sbjct: 447 EQKRQQRQAEEGASPSGEQAAPPDRNGASPPPPNSTTGKTASGPALLPEER-VLFRLMLE 505
Query: 85 RFLHVVSFELGRLEV-SFLKEIPEDFIENLATKLKNWT 121
+VS LG + + F + P DF A ++ T
Sbjct: 506 NGRRMVSLVLGHMALDEFSEGAPRDFARAFAEMYEDGT 543
>gi|328772740|gb|EGF82778.1| hypothetical protein BATDEDRAFT_9489 [Batrachochytrium
dendrobatidis JAM81]
Length = 556
Score = 35.0 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 12/85 (14%)
Query: 37 CFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDY---KMVEMLQRFLHVVSFE 93
P++E TEK+ T +Y + E + + K+ + + F+ VS +
Sbjct: 28 TPPISENPPTEKEIACTEQLVQTLRDYGQYESEEEAQKREIVLGKIDAIFKEFVRSVSIK 87
Query: 94 LGRLEVSFLKEIPEDFIENLATKLK 118
G +PE ++ K+
Sbjct: 88 NG---------LPESLANDVGGKIF 103
>gi|254462374|ref|ZP_05075790.1| aminomethyl transferase family protein [Rhodobacterales bacterium
HTCC2083]
gi|206678963|gb|EDZ43450.1| aminomethyl transferase family protein [Rhodobacteraceae bacterium
HTCC2083]
Length = 104
Score = 35.0 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 91 SFELGRLEVSFLKEIPE---DFIENLATKLKNWTGEDWEIRFSLGRCCEYFEIDSDIKAV 147
+ ++ K + + + L WTG WE+ S I SD + V
Sbjct: 8 YINPADVTMAMAKGARQRGVEIVRRLQADSFEWTGTHWEVTCSKMIEKRGNLIASDEQVV 67
Query: 148 RTI 150
T
Sbjct: 68 ITA 70
>gi|328852279|gb|EGG01426.1| hypothetical protein MELLADRAFT_92176 [Melampsora larici-populina
98AG31]
Length = 330
Score = 34.6 bits (78), Expect = 4.2, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 57/172 (33%), Gaps = 23/172 (13%)
Query: 5 SWKKRKKK---LDALNVSSFA-IGENALPRNISSDECFPLAEAGITEKQDVLNRLSACTP 60
+WK + L LN + + + ++ S P A+ T + + L
Sbjct: 116 TWKDYRDNAATLPELNPAQATKLKQLSIISKASQSRVIPYADLLGTLEIQTVQELEELII 175
Query: 61 DNYTKQLIE--LCEKNHDYKMVEMLQRFLHVVSFEL--GR-LEV--SFLKEIPEDFIENL 113
D ++E L +K +M + R + +V+ GR +E+ S PE + L
Sbjct: 176 DAIYSNILEAKLDQKFSQVEMESCIGRDVRLVTSTETNGREIEMDGSIDSNPPEGSVLEL 235
Query: 114 ATKLKNWTGE---------DWEIRFSLGRCCEY---FEIDSDIKAVRTIFPT 153
+KL+ WT + + ++ V P
Sbjct: 236 RSKLQMWTDSVGGVLNQLDQYINTIREKDTKTADSEAQQAELVRKVLQSLPN 287
>gi|297161276|gb|ADI10988.1| putative regulatory protein [Streptomyces bingchenggensis BCW-1]
Length = 372
Score = 34.6 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 12/80 (15%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 23 IGENALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEM 82
+ +S P AE + + ++ L P + ++ +L E + + E
Sbjct: 170 AQRDRFMARVSIGYPSPQAELQMLDIHGGVSPLDDLQPVAHAHEIAKLIEAVREVHVAEA 229
Query: 83 LQRF-LHVVSFELGRLEVSF 101
++R+ + +VS ++
Sbjct: 230 VRRYAVDLVSATRNHPDLRL 249
>gi|312143374|ref|YP_003994820.1| cobalamin synthesis protein P47K [Halanaerobium sp. 'sapolanicus']
gi|311904025|gb|ADQ14466.1| cobalamin synthesis protein P47K [Halanaerobium sp. 'sapolanicus']
Length = 311
Score = 34.6 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 22/109 (20%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 13 LDALNVSSFAIGENALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCE 72
+DALN+++ N++ I+ + + + + + +D+ N + N +++E
Sbjct: 136 VDALNINNLLKSVNSVKEQIAYSDLILINKTDLVDAKDIENAVVNIKMINEHAKIVETSF 195
Query: 73 KNHDYKMVEMLQRFLHVVSFELGRLEVSFLKE--IPEDFIENLATKLKN 119
D ++E L + S RL+ + E IPE+F+ ++K
Sbjct: 196 AKIDINLLENLSNINDLKSV---RLDDNLSSENIIPENFLLKFEKEIKE 241
>gi|297800618|ref|XP_002868193.1| hypothetical protein ARALYDRAFT_493321 [Arabidopsis lyrata subsp.
lyrata]
gi|297314029|gb|EFH44452.1| hypothetical protein ARALYDRAFT_493321 [Arabidopsis lyrata subsp.
lyrata]
Length = 390
Score = 34.6 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 7/91 (7%)
Query: 28 LPRNISSDECFPLAEAGITEKQDV-------LNRLSACTPDNYTKQLIELCEKNHDYKMV 80
+PR+ S E LA +D+ +N + P+ + LIE C+ D ++
Sbjct: 66 IPRSSFSSEAEKLAGNPTVTVKDLHDKMLNSVNVKRSMPPNAWLWSLIENCQNQDDIHLL 125
Query: 81 EMLQRFLHVVSFELGRLEVSFLKEIPEDFIE 111
+ + L R+ +F + + +
Sbjct: 126 FDVLQNLRRFRLSNLRIHDNFNCNLCQQVAK 156
>gi|254462716|ref|ZP_05076132.1| Glycine cleavage T-protein (aminomethyl transferase)
[Rhodobacterales bacterium HTCC2083]
gi|206679305|gb|EDZ43792.1| Glycine cleavage T-protein (aminomethyl transferase)
[Rhodobacteraceae bacterium HTCC2083]
Length = 833
Score = 34.6 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 91 SFELGRLEVSFLKEIPE---DFIENLATKLKNWTGEDWEIRFSLGRCCEYFEIDSDIKAV 147
+ ++ K + + + L WTG WE+ S I SD + V
Sbjct: 147 YINPADVTMAMAKGARQRGVEIVRRLQADSFEWTGTHWEVTCSKMIEKGGNLIASDEQVV 206
Query: 148 RTI 150
T
Sbjct: 207 ITA 209
>gi|115473959|ref|NP_001060578.1| Os07g0668200 [Oryza sativa Japonica Group]
gi|34393740|dbj|BAC83401.1| putative adenyl cyclase [Oryza sativa Japonica Group]
gi|50510075|dbj|BAD30727.1| putative adenyl cyclase [Oryza sativa Japonica Group]
gi|113612114|dbj|BAF22492.1| Os07g0668200 [Oryza sativa Japonica Group]
gi|218200224|gb|EEC82651.1| hypothetical protein OsI_27260 [Oryza sativa Indica Group]
gi|222637646|gb|EEE67778.1| hypothetical protein OsJ_25503 [Oryza sativa Japonica Group]
Length = 413
Score = 34.6 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 16/101 (15%), Positives = 37/101 (36%), Gaps = 5/101 (4%)
Query: 3 AISWKKRKKKLDALNVSSFAIGENALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDN 62
+IS + R +K ++++ A + + A + +K P+
Sbjct: 77 SISSQWRNEKSVCYHMAATHYSTEASDIDQPT-----EAVVELYQKMLKSVEAETMPPNA 131
Query: 63 YTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLK 103
+ +I C D K++ + + L V R++ +F
Sbjct: 132 WLWSMISSCSNKEDIKLLIQILQKLRVFRLSNLRIDANFND 172
>gi|225432372|ref|XP_002276104.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 393
Score = 34.3 bits (77), Expect = 6.2, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
Query: 28 LPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNY-TKQLIELCEKNHDYKMVEMLQRF 86
+ SS E P + + + ++ P N LIE CE + D K++ + +
Sbjct: 76 ARASFSSVEVGPTEAVKELYNKMLKSVVAQTMPPNAWLWSLIEKCENHEDIKLLFDMLQN 135
Query: 87 LHVVSFELGRLEVSFLKEIPEDFIE 111
L R+ +F + + +
Sbjct: 136 LRRFRLSNLRIHENFNCNLCREVAK 160
>gi|331084506|ref|ZP_08333607.1| hypothetical protein HMPREF0992_02531 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330401214|gb|EGG80805.1| hypothetical protein HMPREF0992_02531 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 786
Score = 33.9 bits (76), Expect = 6.6, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Query: 29 PRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLH 88
NI + E P +E T K + + + T++ E + +L
Sbjct: 595 ENNIPNTEVPPSSENSETVKPNSQEKNTNSETVKTTERTSETKTQK---PTKPEKNNYLF 651
Query: 89 VVSFELG 95
+ F G
Sbjct: 652 IFKFLPG 658
>gi|260587911|ref|ZP_05853824.1| conserved hypothetical protein [Blautia hansenii DSM 20583]
gi|260541438|gb|EEX22007.1| conserved hypothetical protein [Blautia hansenii DSM 20583]
Length = 788
Score = 33.9 bits (76), Expect = 6.6, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Query: 29 PRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLH 88
NI + E P +E T K + + + T++ E + +L
Sbjct: 597 ENNIPNTEVPPSSENSETVKPNSQEKNTNSETVKTTERTSETKTQK---PTKPEKNNYLF 653
Query: 89 VVSFELG 95
+ F G
Sbjct: 654 IFKFLPG 660
>gi|83310597|ref|YP_420861.1| hypothetical protein amb1498 [Magnetospirillum magneticum AMB-1]
gi|82945438|dbj|BAE50302.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
Length = 114
Score = 33.9 bits (76), Expect = 8.3, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 125 WEIRFSLGRCCEYFEIDSDIKAVRTIFPTAQVVCIRTIP 163
W R ++AV FP A + +R IP
Sbjct: 60 WIARRDEIAAPSDARDHPLVRAVLAHFPDATIDAVRPIP 98
>gi|149186799|ref|ZP_01865109.1| DNA polymerase III subunits gamma and tau [Erythrobacter sp. SD-21]
gi|148829466|gb|EDL47907.1| DNA polymerase III subunits gamma and tau [Erythrobacter sp. SD-21]
Length = 612
Score = 33.9 bits (76), Expect = 8.5, Method: Composition-based stats.
Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 16/112 (14%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
++LIE + +++ + +S E+G+L + + + L L T
Sbjct: 485 EELIEKVSAAGKLQAESIMRLQIRPISVEMGKLVYTRDAKYGDAIEPVLKDALYAVTETR 544
Query: 125 WEI----------RFSLGRCCEYFEI------DSDIKAVRTIFPTAQVVCIR 160
W++ R + +KAV FP A+++ R
Sbjct: 545 WQLETGDPALATPSLEEQRQAKAEAAKAAMKEHPMVKAVEAAFPDAEMIEDR 596
>gi|307944980|ref|ZP_07660317.1| AraC family transcriptional regulator [Roseibium sp. TrichSKD4]
gi|307771904|gb|EFO31128.1| AraC family transcriptional regulator [Roseibium sp. TrichSKD4]
Length = 247
Score = 33.5 bits (75), Expect = 9.0, Method: Composition-based stats.
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 79 MVEMLQRFLHVVSFELGRLEVSFLKEIPEDF 109
+ ++L+R+ + F R EV F ++ P F
Sbjct: 26 LKDLLERWFRLSRFSHSRHEVRFAEDAPHTF 56
Database: nr
Posted date: May 13, 2011 4:10 AM
Number of letters in database: 999,999,932
Number of sequences in database: 2,987,209
Database: /data/usr2/db/fasta/nr.01
Posted date: May 13, 2011 4:17 AM
Number of letters in database: 999,998,956
Number of sequences in database: 2,896,973
Database: /data/usr2/db/fasta/nr.02
Posted date: May 13, 2011 4:23 AM
Number of letters in database: 999,999,979
Number of sequences in database: 2,907,862
Database: /data/usr2/db/fasta/nr.03
Posted date: May 13, 2011 4:29 AM
Number of letters in database: 999,999,513
Number of sequences in database: 2,932,190
Database: /data/usr2/db/fasta/nr.04
Posted date: May 13, 2011 4:33 AM
Number of letters in database: 792,586,372
Number of sequences in database: 2,260,650
Lambda K H
0.310 0.135 0.380
Lambda K H
0.267 0.0423 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,752,667,200
Number of Sequences: 13984884
Number of extensions: 94887359
Number of successful extensions: 301241
Number of sequences better than 10.0: 236
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 300625
Number of HSP's gapped (non-prelim): 449
length of query: 165
length of database: 4,792,584,752
effective HSP length: 126
effective length of query: 39
effective length of database: 3,030,489,368
effective search space: 118189085352
effective search space used: 118189085352
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 76 (33.8 bits)