RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= 537021.9.peg.473_1
(165 letters)
>gnl|CDD|32462 COG2308, COG2308, Uncharacterized conserved protein [Function
unknown].
Length = 488
Score = 33.7 bits (77), Expect = 0.022
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 19/84 (22%)
Query: 28 LPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLI--------ELCEKNHDYKM 79
+PR IS+ E L EAG+ ++ LN A D Y Q I EL N +
Sbjct: 77 IPRIISAAEWARL-EAGLVQRVRALNAFLA---DIYGDQRILRDGVIPPELVASNPGFLR 132
Query: 80 VEML------QRFLHVVSFELGRL 97
EM+ +LHV +L R
Sbjct: 133 -EMVGIRPPGGHYLHVCGTDLIRD 155
>gnl|CDD|143967 pfam00210, Ferritin, Ferritin-like domain. This family contains
ferritins and other ferritin-like proteins such as
members of the DPS family and bacterioferritins.
Length = 142
Score = 28.8 bits (65), Expect = 0.70
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLH 88
++LIEL E+ DY + L+ FL
Sbjct: 100 RELIELAEEEGDYATADFLEWFLE 123
>gnl|CDD|36882 KOG1669, KOG1669, KOG1669, Predicted mRNA cap-binding protein
related to eIF-4E [Translation, ribosomal structure and
biogenesis].
Length = 208
Score = 28.5 bits (63), Expect = 0.94
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 11/83 (13%)
Query: 60 PDNYTKQLIELCEKNHDYKMVEMLQRFL-HVVSFEL--GRLEVSFLKEIPEDFIENLATK 116
+Y K + + ++ VE H+ + + ++ F KE + E+ A
Sbjct: 49 KQSYEKNIKSIGT----FESVEQFWYLYHHLKRPDRMDRQFDIHFFKEGIKPVWEDKA-- 102
Query: 117 LKNWTGEDWEIRFSLGRCCEYFE 139
N G W IR G Y+E
Sbjct: 103 --NCNGGKWIIRLKKGVSQRYWE 123
>gnl|CDD|146681 pfam04169, DUF404, Domain of unknown function (DUF404).
Length = 253
Score = 28.6 bits (65), Expect = 0.97
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 17/82 (20%)
Query: 28 LPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYTKQLI--------ELCEKNHDYK- 78
+PR IS+DE L E G+ ++ LN A D Y +Q I EL N +
Sbjct: 49 VPRIISADEWARL-ERGLAQRARALNAFLA---DIYGEQRILKDGVLPPELVYGNPGFLR 104
Query: 79 -MVEM---LQRFLHVVSFELGR 96
M + +LH+ +L R
Sbjct: 105 PMRGVKPPGGVYLHIYGIDLVR 126
>gnl|CDD|37944 KOG2733, KOG2733, KOG2733, Uncharacterized membrane protein
[Function unknown].
Length = 423
Score = 26.4 bits (58), Expect = 3.5
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 40 LAEAGITEK--QDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVV 90
LA AG EK Q+VL ++ T + + +I + + ++ + EM ++ +V
Sbjct: 36 LAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQARVIV 88
>gnl|CDD|29823 cd00778, ProRS_core_arch_euk, Prolyl-tRNA synthetase (ProRS) class
II core catalytic domain. ProRS is a homodimer. It is
responsible for the attachment of proline to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. Class II assignment is
based upon its structure and the presence of three
characteristic sequence motifs in the core domain. This
subfamily contains the core domain of ProRS from
archaea, the cytoplasm of eukaryotes and some bacteria..
Length = 261
Score = 26.7 bits (59), Expect = 3.7
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 73 KNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGE 123
+ + Y + E +Q+ L E G V F IPE +E ++ + E
Sbjct: 28 RPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPE 78
>gnl|CDD|36107 KOG0889, KOG0889, KOG0889, Histone acetyltransferase SAGA, TRRAP/TRA1
component, PI-3 kinase superfamily [Signal transduction
mechanisms, Chromatin structure and dynamics,
Replication, recombination and repair, Cell cycle
control, cell division, chromosome partitioning].
Length = 3550
Score = 26.4 bits (58), Expect = 3.8
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 62 NYTKQLIELCEKNHDYKMVEMLQRFLHVV--SFELGRLEVSFLKEIPEDFI-ENLATKLK 118
N + L+E C K+ + K+ E L + L + F + L ++ I E L +
Sbjct: 1975 NQIQALLEKCLKSGNLKVTEALNQLLSRLLSIFPNTHESLELLYQVVSKLIDELLTSVTT 2034
Query: 119 NWTGED 124
Sbjct: 2035 VPLQLA 2040
>gnl|CDD|176895 cd08886, RHO_alpha_C_2, C-terminal catalytic domain of the
oxygenase alpha subunit of an uncharacterized subgroup
of Rieske-type non-heme iron aromatic ring-hydroxylating
oxygenases. C-terminal catalytic domain of the
oxygenase alpha subunit of a functionally
uncharacterized subgroup of the Rieske-type non-heme
iron aromatic ring-hydroxylating oxygenase (RHO) family.
RHOs, also known as aromatic ring hydroxylating
dioxygenases, utilize non-heme Fe(II) to catalyze the
addition of hydroxyl groups to the aromatic ring, an
initial step in the oxidative degradation of aromatic
compounds. RHOs are composed of either two or three
protein components, and are comprised of an electron
transport chain (ETC) and an oxygenase. The ETC
transfers reducing equivalents from the electron donor
to the oxygenase component, which in turn transfers
electrons to the oxygen molecules. The oxygenase
components are oligomers, either (alpha)n or
(alpha)n(beta)n. The alpha subunits are the catalytic
components and have an N-terminal domain, which binds a
Rieske-like 2Fe-2S cluster, and a C-terminal domain
which binds the non-heme Fe(II). The Fe(II) is
co-ordinated by conserved His and Asp residues. This
subfamily belongs to the SRPBCC
(START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain
superfamily of proteins that bind hydrophobic ligands.
SRPBCC domains have a deep hydrophobic ligand-binding
pocket.
Length = 182
Score = 25.5 bits (56), Expect = 6.7
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 59 TPDNYTKQLIELCE---KNHDYKMVEMLQRFLHVVSFELGRL 97
+ K+LIE + D ++VE +QR L +F GR+
Sbjct: 117 ELTDEEKELIEYYRQVLQPEDLELVESVQRGLKSRAFGQGRI 158
>gnl|CDD|37551 KOG2340, KOG2340, KOG2340, Uncharacterized conserved protein
[Function unknown].
Length = 698
Score = 25.3 bits (55), Expect = 8.1
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 91 SFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFSLG 132
+ F E+ I +L + K + I SL
Sbjct: 128 NESEDPFWSHFDDELGSKHIADLIARTKTTVKLEKSILGSLI 169
>gnl|CDD|144612 pfam01084, Ribosomal_S18, Ribosomal protein S18.
Length = 54
Score = 25.1 bits (56), Expect = 9.7
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 76 DYKMVEMLQRFL 87
DYK VE+L+RF+
Sbjct: 8 DYKDVELLRRFI 19
>gnl|CDD|144566 pfam01025, GrpE, GrpE.
Length = 162
Score = 25.2 bits (56), Expect = 9.9
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 41 AEAGITEKQDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVV-SFELGRLEV 99
E I E +D L RL A +NY K+ E+ Y + + + L V+ + E L
Sbjct: 20 LEEEIEELKDRLLRLLAEF-ENYRKRTEREREEAKKYAIEKFAKDLLPVLDNLERA-LAA 77
Query: 100 SFLKEIPEDFIENL 113
+ E + +E +
Sbjct: 78 AKENEDVKSLVEGV 91
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.321 0.137 0.414
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,034,885
Number of extensions: 99261
Number of successful extensions: 270
Number of sequences better than 10.0: 1
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 18
Length of query: 165
Length of database: 6,263,737
Length adjustment: 87
Effective length of query: 78
Effective length of database: 4,383,754
Effective search space: 341932812
Effective search space used: 341932812
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.5 bits)