RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= 537021.9.peg.473_1
(165 letters)
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans} (A:1-88,A:257-401)
Length = 233
Score = 28.2 bits (62), Expect = 0.54
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 74 NHDYKMVEMLQRFLHVVSFE-LGRLEVSFLKEIPEDF 109
+ D M +L +F+ FE + +F +PE+F
Sbjct: 19 DDDKHMTSLLSQFVSKTDFESYEDFQENFKILVPENF 55
>1hf8_A AP180-2, CALM-N, clathrin assembly protein short form;
triskelion, coated vesicles, endocytosis, SELF-
assembly, alpha-alpha superhelix; 2.0A {Rattus
norvegicus} (A:152-289)
Length = 138
Score = 27.1 bits (60), Expect = 1.1
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 78 KMVEMLQRFLHV-VSFELGRLEVSFLKEIPEDFIENL 113
+ + FL V + R ++ L + P ++ L
Sbjct: 91 TRMTRISEFLKVAEQVGIDRGDIPDLSQAPSSLLDAL 127
>1dps_A DPS, PEXB; DNA-binding protein, ferritin, iron
sequestration, stationary phase, oxidative damage; 1.60A
{Escherichia coli} (A:)
Length = 167
Score = 26.6 bits (58), Expect = 1.6
Identities = 2/24 (8%), Positives = 7/24 (29%)
Query: 64 TKQLIELCEKNHDYKMVEMLQRFL 87
+ + + D ++L
Sbjct: 129 ANDVRKAIGEAKDDDTADILTAAS 152
>2fjc_A Antigen TPF1; mini ferritin, iron binding protein, metal
transport; 2.50A {Treponema pallidum} (A:)
Length = 156
Score = 26.2 bits (57), Expect = 2.2
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFL 87
Q L ++ D ++ L
Sbjct: 118 SQTQVLAAESGDAVTDGIITDIL 140
>2wlu_A DPS-like peroxide resistance protein; DNA-binding,
oxidoreductase; 1.94A {Streptococcus pyogenes} PDB:
2wla_A (A:)
Length = 175
Score = 26.3 bits (57), Expect = 2.4
Identities = 10/105 (9%), Positives = 26/105 (24%), Gaps = 14/105 (13%)
Query: 14 DALNVSSFAIGENALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYT-----KQLI 68
D ++ IG + L EA T + V L+ + +
Sbjct: 77 DEVSERLITIGGAPYSTLAEFSKHSKLDEAKGTYDKTVAQHLARLVEVYLYLSSLYQVGL 136
Query: 69 ELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENL 113
++ ++ D ++ + + +
Sbjct: 137 DITDEEGDAGTNDLFTAAKTE--------AEKTIWML-QAERGQG 172
>1zs3_A Lactococcus lactis Mg1363 DPSA; oxidative stress, DNA
binding, lactic acid bacteria, DNA binding protein;
2.70A {Lactococcus lactis} (A:26-182)
Length = 157
Score = 26.1 bits (57), Expect = 2.7
Identities = 3/23 (13%), Positives = 8/23 (34%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFL 87
+ I+L K + + +
Sbjct: 105 TRAIKLANKEEKFALAAGVVELY 127
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha,
alpha helices repeats, coiled-coil,
endocytosis/exocytosis complex; 2.20A {Drosophila
melanogaster} (A:165-299)
Length = 135
Score = 25.9 bits (57), Expect = 3.0
Identities = 6/34 (17%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 81 EMLQRFLHVV-SFELGRLEVSFLKEIPEDFIENL 113
+ + FL V + + + ++ L + P ++ L
Sbjct: 95 DRVGEFLKVAENVGIDKGDIPDLTKAPSSLLDAL 128
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin,
sulfolobus tokodaii strain 7, four-helix bundle, domain
swapping; 1.70A {Sulfolobus tokodaii str} (A:)
Length = 144
Score = 25.7 bits (56), Expect = 3.2
Identities = 1/24 (4%), Positives = 7/24 (29%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLH 88
++ + ++ E +
Sbjct: 101 PGFAKVAREEGFPEVAEWFETLAR 124
>1o9r_A Agrobacterium tumefaciens DPS; iron-binding protein, DNA
protection from oxidative damage, DNA-binding, iron-
binding protein; 1.45A {Agrobacterium tumefaciens} (A:)
Length = 162
Score = 25.9 bits (56), Expect = 3.2
Identities = 2/24 (8%), Positives = 9/24 (37%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLH 88
++ I+ ++ D ++
Sbjct: 122 RKAIDDSDEAGDPTTADIFTAASR 145
>1zuj_A Hypothetical protein llacc01001955; oxidative stress, DPS,
DNA binding, lactic acid bacteria, DNA binding protein;
2.90A {Lactococcus lactis} (A:)
Length = 179
Score = 25.7 bits (56), Expect = 3.6
Identities = 3/23 (13%), Positives = 11/23 (47%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFL 87
+ I+L +K + + +++
Sbjct: 129 GRAIKLAQKEEKFSLELAIRKLY 151
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate
aminotransferase, archaea; HET: PMP; 2.30A
{Thermococcus litoralis} (A:1-45,A:299-407)
Length = 154
Score = 25.7 bits (56), Expect = 3.6
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 55 LSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVVSF 92
L+A PD + + + ++ D M++ L+ L F
Sbjct: 39 LAAGDPDYHLEGALLGYKEKRDI-MLKALENHLPNAEF 75
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON,
four-helix bundle, rubredoxin-like, electron transport;
1.63A {Desulfovibrio vulgaris} (A:1-148)
Length = 148
Score = 25.4 bits (55), Expect = 4.6
Identities = 0/23 (0%), Positives = 5/23 (21%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFL 87
+ + ++ +
Sbjct: 103 PSFARIAREEGYEEIARVFASIA 125
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan
anemia small ribosomal subunit; 1.15A {Pyrococcus
abyssi} (A:)
Length = 150
Score = 25.1 bits (55), Expect = 5.4
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 102 LKEIP-EDFIENLATKLK---NWTGEDWEIRFSLGRCCEYFEIDSDIKAVRT 149
+ ++P + +E +A +LK +W GR E D R
Sbjct: 4 VYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRV 55
>2gix_A Inward rectifier potassium channel 2; cytoplasmic domains
of KIR2.1, andersen'S mutation, metal transport; 2.02A
{Mus musculus} (A:1-25,A:160-189)
Length = 55
Score = 24.7 bits (54), Expect = 5.7
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 9/34 (26%)
Query: 66 QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEV 99
Q I + EK H R+ V+ E +V
Sbjct: 18 QFINVGEKGH---------RYEPVLFEEKHYYKV 42
>2c41_A DPS family DNA-binding stress response protein;
iron-binding/oxidation protein, DPS (DNA-binding
proteins from starved cells); HET: PG4 PGE; 1.81A
{Thermosynechococcus elongatus} (A:)
Length = 158
Score = 25.0 bits (54), Expect = 5.7
Identities = 5/49 (10%), Positives = 14/49 (28%), Gaps = 9/49 (18%)
Query: 65 KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENL 113
Q E+ + D ++ R + + ++F+
Sbjct: 114 HQDAEIATEAGDIGTADLYTRLVQT--------HQKHRWFL-KEFLAKG 153
>1tjo_A Iron-rich DPSA-homolog protein; ferritin, low-iron, metal
binding protein; 1.60A {Halobacterium salinarum} (A:)
Length = 182
Score = 24.7 bits (53), Expect = 6.0
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 9/48 (18%)
Query: 66 QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENL 113
+ EL E D+ ML+ L I E ++E+
Sbjct: 135 EHTELAENLGDHATAHMLREGLIE--------LEDDAHHI-EHYLEDD 173
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium
tuberculosis H37RV} (A:24-35,A:323-406)
Length = 96
Score = 24.8 bits (54), Expect = 6.1
Identities = 4/32 (12%), Positives = 11/32 (34%)
Query: 119 NWTGEDWEIRFSLGRCCEYFEIDSDIKAVRTI 150
+ L E+D ++A+ ++
Sbjct: 64 GVNDVGGAVTVGLAHYSTMAEVDQLVRALASL 95
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation,
ATP-binding, phosphoprotein, protein biosynthesis,
translation regulation; HET: AMP; 2.6A {Saccharomyces
cerevisiae} PDB: 2vsx_E* (E:)
Length = 284
Score = 24.8 bits (53), Expect = 6.1
Identities = 6/42 (14%), Positives = 19/42 (45%)
Query: 49 QDVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHVV 90
+ +LN+L+ D + +++ + + E L+ + +
Sbjct: 41 KSLLNKLTLEMFDAISSEILAIANISVWETNGETLKAVIEQI 82
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium
lapideum} (A:1-40,A:286-388)
Length = 143
Score = 24.7 bits (54), Expect = 6.8
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 50 DVLNRLSACTPDNYTKQLIELCEKNHDYKMVEMLQRFLHV 89
DV + SA P + ++++ + Y M++ L +
Sbjct: 31 DVCS-FSAGEPQDCVQEMLAAFAERRRY-MLDALNAMPGL 68
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.321 0.137 0.414
Gapped
Lambda K H
0.267 0.0489 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,273,858
Number of extensions: 53664
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 30
Length of query: 165
Length of database: 4,956,049
Length adjustment: 82
Effective length of query: 83
Effective length of database: 2,184,039
Effective search space: 181275237
Effective search space used: 181275237
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.0 bits)