RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.473_1
         (165 letters)



>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid
           leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 132

 Score = 28.1 bits (63), Expect = 0.36
 Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 78  KMVEMLQRFLHVV-SFELGRLEVSFLKEIPEDFIENL 113
             +  +  FL V     + R ++  L + P   ++ L
Sbjct: 93  TRMTRISEFLKVAEQVGIDRGDIPDLSQAPSSLLDAL 129


>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 426

 Score = 27.8 bits (61), Expect = 0.55
 Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 2/63 (3%)

Query: 65  KQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGED 124
           +++++    +   +M          +  +   L +  +  I E    NL+  LK     D
Sbjct: 351 QEVLDYLTNSASLQMKSPAITA--TLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVD 408

Query: 125 WEI 127
            + 
Sbjct: 409 GQE 411


>d1i1ip_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet
          oligopeptidase) {Rat (Rattus norvegicus) [TaxId:
          10116]}
          Length = 665

 Score = 27.0 bits (59), Expect = 0.84
 Identities = 9/43 (20%), Positives = 17/43 (39%)

Query: 22 AIGENALPRNISSDECFPLAEAGITEKQDVLNRLSACTPDNYT 64
          A G N L  ++S ++     E  I + + V + +        T
Sbjct: 6  AAGRNVLRWDLSPEQIKTRTEQLIAQTKQVYDTVGTIALKEVT 48


>d1krqa_ a.25.1.1 (A:) Non-hem ferritin {Campylobacter jejuni
           [TaxId: 197]}
          Length = 165

 Score = 26.1 bits (57), Expect = 1.6
 Identities = 6/25 (24%), Positives = 10/25 (40%)

Query: 64  TKQLIELCEKNHDYKMVEMLQRFLH 88
              L+E    + DY     LQ ++ 
Sbjct: 101 INTLVEHMLTHKDYSTFNFLQWYVS 125


>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 85

 Score = 25.4 bits (55), Expect = 2.5
 Identities = 6/30 (20%), Positives = 14/30 (46%), Gaps = 3/30 (10%)

Query: 55 LSACTPDNYTKQLIELCEKNH---DYKMVE 81
          +++ TP  Y  +L +  + +     YK + 
Sbjct: 1  MASDTPGFYMDKLNKYRQMHGVAITYKELS 30


>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 113

 Score = 25.4 bits (55), Expect = 2.5
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 47 EKQDVLNRLSA-CTPDNYTKQLIELCEKNH---DYKMVEMLQRFLHVVSFE 93
          E+ D+   L    T +N   +L +  +K     +YK  ++     H  SF 
Sbjct: 11 EEVDLNAGLHGNWTLENAKARLNQYFQKEKIQGEYKYTQVGPD--HNRSFI 59


>d1vlga_ a.25.1.1 (A:) Non-hem ferritin {Thermotoga maritima [TaxId:
           2336]}
          Length = 164

 Score = 25.3 bits (55), Expect = 3.0
 Identities = 6/24 (25%), Positives = 12/24 (50%)

Query: 65  KQLIELCEKNHDYKMVEMLQRFLH 88
             ++EL  +  D+  V  L+ F+ 
Sbjct: 104 YNILELASEEKDHATVSFLKWFVD 127


>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1)
           {Desulfovibrio desulfuricans [TaxId: 876]}
          Length = 169

 Score = 24.7 bits (53), Expect = 3.8
 Identities = 6/33 (18%), Positives = 14/33 (42%)

Query: 66  QLIELCEKNHDYKMVEMLQRFLHVVSFELGRLE 98
           Q +++C++  D     + +R +      L   E
Sbjct: 105 QFLKVCKEQGDIVTARLFERIIEEEQAHLTYYE 137


>d1lb3a_ a.25.1.1 (A:) (Apo)ferritin {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 179

 Score = 24.6 bits (53), Expect = 3.9
 Identities = 4/23 (17%), Positives = 7/23 (30%)

Query: 62  NYTKQLIELCEKNHDYKMVEMLQ 84
                L  L     D  + + L+
Sbjct: 107 QALLDLHALGSARADPHLCDFLE 129


>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1)
           {Escherichia coli [TaxId: 562]}
          Length = 158

 Score = 24.6 bits (53), Expect = 4.2
 Identities = 6/22 (27%), Positives = 10/22 (45%)

Query: 66  QLIELCEKNHDYKMVEMLQRFL 87
           + I   +  HDY   +M+   L
Sbjct: 103 EAIGYADSVHDYVSRDMMIEIL 124


>d1by7a_ e.1.1.1 (A:) Plasminogen activator inhibitor-2 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 381

 Score = 24.5 bits (52), Expect = 4.6
 Identities = 9/74 (12%), Positives = 22/74 (29%)

Query: 71  CEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNWTGEDWEIRFS 130
             ++   +++E+       +   L          +     E    KL  WT +D      
Sbjct: 211 YIEDLKAQILELPYAGDVSMFLLLPDEIADVSTGLELLESEITYDKLNKWTSKDKMAEDE 270

Query: 131 LGRCCEYFEIDSDI 144
           +      F+++   
Sbjct: 271 VEVYIPQFKLEEHY 284


>d1euma_ a.25.1.1 (A:) Non-hem ferritin {Escherichia coli, FtnA
           [TaxId: 562]}
          Length = 161

 Score = 24.5 bits (53), Expect = 4.9
 Identities = 6/24 (25%), Positives = 9/24 (37%)

Query: 65  KQLIELCEKNHDYKMVEMLQRFLH 88
            +L      N DY     LQ ++ 
Sbjct: 101 NELAHAAMTNQDYPTFNFLQWYVS 124


>d1s3qa1 a.25.1.1 (A:3-164) Non-hem ferritin {Archaeon Archaeoglobus
           fulgidus [TaxId: 2234]}
          Length = 162

 Score = 24.5 bits (53), Expect = 5.0
 Identities = 5/24 (20%), Positives = 12/24 (50%)

Query: 65  KQLIELCEKNHDYKMVEMLQRFLH 88
            +L+E+  +  D+     LQ ++ 
Sbjct: 102 HELVEMAMQEKDFATYNFLQWYVA 125


>d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine
           O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 382

 Score = 24.2 bits (52), Expect = 5.6
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 11/60 (18%)

Query: 78  KMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKL-----------KNWTGEDWE 126
            + E L+++L  V       E    +EI + F E    +L           +NW  E W 
Sbjct: 17  ALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWL 76


>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 90

 Score = 24.3 bits (52), Expect = 6.3
 Identities = 3/33 (9%), Positives = 11/33 (33%), Gaps = 3/33 (9%)

Query: 52 LNRLSACTPDNYTKQLIELCEKN---HDYKMVE 81
          +      +   + ++L    +K      Y+ + 
Sbjct: 4  MEMAGDLSAGFFMEELNTYRQKQGVVLKYQELP 36


>d1uaaa2 c.37.1.19 (A:308-640) DEXX box DNA helicase {Escherichia
           coli, RepD [TaxId: 562]}
          Length = 333

 Score = 24.0 bits (50), Expect = 7.3
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)

Query: 93  ELGRLEVS-FLKEIPEDFIE 111
           EL R E S FL E+P+D + 
Sbjct: 313 ELVRPEPSRFLLELPQDDLI 332


>d1kxpd3 a.126.1.1 (D:405-473) Vitamin D binding protein {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 69

 Score = 23.7 bits (51), Expect = 7.5
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 37 CFPLAEAGITEKQDVLN-RLSACTPDNYTKQLIELCEKNHDY 77
          C   +E   TE +  L  RL A  PD   K+L +L  K  D+
Sbjct: 3  CADYSENTFTEYKKKLAERLKAKLPDATPKELAKLVNKRSDF 44


>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus
           stearothermophilus, PcrA [TaxId: 1422]}
          Length = 623

 Score = 23.8 bits (50), Expect = 7.9
 Identities = 6/12 (50%), Positives = 7/12 (58%)

Query: 101 FLKEIPEDFIEN 112
           FL EIP   +E 
Sbjct: 609 FLNEIPAHLLET 620


>d1pjra2 c.37.1.19 (A:319-651) DEXX box DNA helicase {Bacillus
           stearothermophilus, PcrA [TaxId: 1422]}
          Length = 333

 Score = 23.9 bits (50), Expect = 8.1
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query: 101 FLKEIPEDFIE 111
           FL EIP   +E
Sbjct: 319 FLNEIPAHLLE 329


>d1xbia1 d.79.3.1 (A:2-116) Ribosomal protein L7ae {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 23.7 bits (51), Expect = 9.5
 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 58  CTPDNYTKQLIELCEKNH-DYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATK 116
             P+     L  LCE+    Y  V   Q        E+    V+ + E   + ++ L  K
Sbjct: 51  VKPEEVVAHLPYLCEEKGIPYAYVASKQDLGKAAGLEVAASSVAIINEGDAEELKVLIEK 110

Query: 117 LK 118
           + 
Sbjct: 111 VN 112


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0443    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 640,547
Number of extensions: 28533
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 30
Length of query: 165
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 86
Effective length of database: 1,322,926
Effective search space: 113771636
Effective search space used: 113771636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.4 bits)