BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 537021.9.peg.473_1
(165 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>537021.9.peg.473_1
Length = 165
Score = 342 bits (877), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 1 LHAISWKKRKKKLDALNVSSFAIGENALPRNISSDECFPLAEAGITEKQDVLNRLSACTP 60
LHAISWKKRKKKLDALNVSSFAIGENALPRNISSDECFPLAEAGITEKQDVLNRLSACTP
Sbjct: 1 LHAISWKKRKKKLDALNVSSFAIGENALPRNISSDECFPLAEAGITEKQDVLNRLSACTP 60
Query: 61 DNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNW 120
DNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNW
Sbjct: 61 DNYTKQLIELCEKNHDYKMVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIENLATKLKNW 120
Query: 121 TGEDWEIRFSLGRCCEYFEIDSDIKAVRTIFPTAQVVCIRTIPNL 165
TGEDWEIRFSLGRCCEYFEIDSDIKAVRTIFPTAQVVCIRTIPNL
Sbjct: 121 TGEDWEIRFSLGRCCEYFEIDSDIKAVRTIFPTAQVVCIRTIPNL 165
>gi|254780321|ref|YP_003064734.1| GTP-binding protein LepA [Candidatus Liberibacter asiaticus str.
psy62]
Length = 606
Score = 23.9 bits (50), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 54 RLSACTPDNYTKQLIELCEKNHDYK--MVEMLQRFLHVVSFELGRLEVSFLKEIPEDFIE 111
+++ TP+ Y +++LC++ + M + R + V +EL EV F DF +
Sbjct: 414 QVTIITPNEYLGSILKLCQERRGIQIDMSHLDNRAMIV--YELPLNEVIF------DFYD 465
Query: 112 NLATKLKNWTGEDWEI 127
L + K + D+ +
Sbjct: 466 RLKSVSKGYASFDYNV 481
>gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
Length = 976
Score = 23.5 bits (49), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 116 KLKNWTGEDWEIRFSLGRCCEYFEIDSDIKAVRTI 150
K KN+ ++ + GR Y EI+S ++R I
Sbjct: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
>gi|254780725|ref|YP_003065138.1| response regulator receiver protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 427
Score = 22.7 bits (47), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 92 FELGRLEVSFLKEIPEDFIENLA 114
+ +GR++ +F+ +P + ENL+
Sbjct: 223 YPVGRIDKAFVSRLPVFYAENLS 245
>gi|254780876|ref|YP_003065289.1| hypothetical protein CLIBASIA_03865 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 210
Score = 22.3 bits (46), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 14 DALNVSSFAIGENALPRNISSDECFPLAEAGITEK 48
DA++ + + EN L + +A+A I EK
Sbjct: 60 DAMSAGDYVVAENHLQHAEHYNRIVSMAQAQIQEK 94
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.321 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,970
Number of Sequences: 1233
Number of extensions: 3745
Number of successful extensions: 11
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 7
length of query: 165
length of database: 328,796
effective HSP length: 68
effective length of query: 97
effective length of database: 244,952
effective search space: 23760344
effective search space used: 23760344
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 35 (18.1 bits)