HHsearch alignment for GI: peg_476 and conserved domain: COG2244
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only].
Probab=99.37 E-value=3.9e-09 Score=68.08 Aligned_cols=198 Identities=13% Similarity=0.194 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 99999999999999999999999999999957656799999999634999999986556677755899999985100799
Q 537021.9.peg.4 4 KLVRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSEN 83 (241)
Q Consensus 4 ~l~r~~~~i~~~tl~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~ 83 (241)
T Consensus 214 ~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~-~~~G~Y~~a~~i~~~~~~~----~~~l~~~l~P~~s~~~~~~~~~~ 288 (480)
T COG2244 214 ELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGP-AQVGIYSAAQRLVSLLLIV----ASALNRVLFPALSRAYAEGDRKA 288 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 999999899999999999998579999999578-7932799999999999999----99999999999999876687678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999987143321024763210246888999999999999989999999999999998689
Q 537021.9.peg.4 84 AWRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYF 163 (241)
Q Consensus 84 a~~~~~~~~~~~~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~F~ 163 (241)
T Consensus 289 ~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~-------~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~ 361 (480)
T COG2244 289 LKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY-------ASAAPILQLLALAGLFLSLVSLTSSLLQALGKQR 361 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 999999999999999999999999989999999828630-------2169999999999999999999999999836017
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9867778899999999999996046557316899999999999999999999999973
Q 537021.9.peg.4 164 IACMPSMVIHILPIFVLTYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKS 221 (241)
Q Consensus 164 ~~a~~pi~~Ni~~I~~~~~~~~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k~ 221 (241)
T Consensus 362 ~~~~~~~~~~i~~~~l~~~li~~-------~g~~g~~~a~-~~~~~~~~~~~~~~~~~ 411 (480)
T COG2244 362 LLLLISLISALLNLILNLLLIPR-------FGLIGAAIAT-ASVIALALLLFYILRLR 411 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999988-------6699999999-99999999999999999