HHsearch alignment for GI: peg_476 and conserved domain: PRK09575

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed.
Probab=99.60  E-value=5.2e-12  Score=83.88  Aligned_cols=221  Identities=10%  Similarity=-0.020  Sum_probs=152.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999999999999999999999999995----7656799999999634999999986556677755899999985100
Q 537021.9.peg.4    5 LVRNFFTLVASESVNRCLGFVRASLMAAVF----GVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNG   80 (241)
Q Consensus         5 l~r~~~~i~~~tl~SrilGf~Re~~~A~~f----Ga~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~   80 (241)
T Consensus        13 I~k~~~~laiP~i~~~l~~~ly~ivD~~fvG~~~G~~-alAAv~~~~pi~~~~~~~~~----~lg~G~~~lis~~~G~~~   87 (456)
T PRK09575         13 IYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAE-GLAGINMAWPVIGIILGIGL----MVGMGTGSLLSIYRGEGD   87 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCC
T ss_conf             8999999999999999999999999999944726898-99999999999999999999----999999999999976999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             79999999999999999999999999987143321024763210246888999999999999989999999999999998
Q 537021.9.peg.4   81 SENAWRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASG  160 (241)
Q Consensus        81 ~~~a~~~~~~~~~~~~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~  160 (241)
T Consensus        88 ~~~a~~~~~~~~~~~~~~~~i~~~~~~~~~~~il~-~l----ga~~~v~~~a~~Yl~i~~~g~~~~~~~~~~~~~lra~G  162 (456)
T PRK09575         88 LQKAKTILTTGLLLLLLLGPIVSIILWLFADDFLL-AQ----GAEGRTLELGLQYIQVLTWGCLFTIGAIALPMLVRNDE  162 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999999999999999999999999998-83----97899999999999999998899999999999998289


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCC-HHHH
Q ss_conf             6899867778899999999999996046557316899999999999999999999999973--987777688999-8998
Q 537021.9.peg.4  161 RYFIACMPSMVIHILPIFVLTYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKS--GVELRFQYPRLT-CNVK  237 (241)
Q Consensus       161 ~F~~~a~~pi~~Ni~~I~~~~~~~~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k~--g~~~~~~~~~~~-~~~k  237 (241)
T Consensus       163 ~~~~~~~~~i~~~i~NiiLd~lfI~-~----~~lGv~GAAlATvisq~i~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~  237 (456)
T PRK09575        163 SPNLATGLMVLGALINIVLDYLFIG-V----LDWGLTGAAIATALAQLVVTILGLGYFFSSRANIKLSLKELLFNWSLAP  237 (456)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHC-C----CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCCHHHHH
T ss_conf             9830589999977889989999972-0----8998644999999999999999999999068614753763115699999


Q ss_pred             HHC
Q ss_conf             542
Q 537021.9.peg.4  238 LFL  240 (241)
Q Consensus       238 ~~l  240 (241)
T Consensus       238 ~i~  240 (456)
T PRK09575        238 QIV  240 (456)
T ss_pred             HHH
T ss_conf             999