HHsearch alignment for GI: peg_476 and conserved domain: TIGR00797

>TIGR00797 matE MATE efflux family protein; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transporter activity, 0015297 antiporter activity, 0006855 multidrug transport, 0016020 membrane.
Probab=98.34  E-value=0.00014  Score=43.14  Aligned_cols=144  Identities=15%  Similarity=0.179  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999995765679999999963499999998655667775589999998510079999999999999999
Q 537021.9.peg.4   18 VNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSENAWRLSSEVFSVLLP   97 (241)
Q Consensus        18 ~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~a~~~~~~~~~~~~~   97 (241)
T Consensus       236 ~~~~~~~~~~~~~~~~~G~~~~lA~~~~~~~~~~~~~m~~~G~-~~A~~~~v---G~~lGa~~~~~a~~~~~~~~~~~~~  311 (412)
T TIGR00797       236 ILESLSFALVALLVARLGGSIALAAHQVALNVESLLFMPAFGL-GIAVSILV---GQALGAGDPKRAKEVARVALKLSLL  311 (412)
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999873167324677899999999999999899-99999999---9985146878999999999999999


Q ss_pred             HHHHHHHHHHHHHHH---HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999987143---3210247632102468889999999999999899999999999999986899867778
Q 537021.9.peg.4   98 ILMVMIMVIELVLPL---LVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFIACMPSM  170 (241)
Q Consensus        98 ~~~~i~~l~~ifap~---~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~F~~~a~~pi  170 (241)
T Consensus       312 ~~~~~~~~~~~~~~~g~Pi~~-lF----t~d~~v~~~~~~~l~~~~~~~~~~~~~~v~~G~lrG~G~~~~~~~~~~  382 (412)
T TIGR00797       312 LGLVLAIILILFREVGLPIAR-LF----TNDPEVLELAASYLIFVALFQFSDGIQFVLSGVLRGAGDTKVILIITF  382 (412)
T ss_pred             HHHHHHHHHHHHCCCCCCHHH-HH----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             999999999983023642455-50----795769999999999999999877899999999983272579999999