HHsearch alignment for GI: peg_476 and conserved domain: TIGR00797
>TIGR00797 matE MATE efflux family protein; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transporter activity, 0015297 antiporter activity, 0006855 multidrug transport, 0016020 membrane.
Probab=98.34 E-value=0.00014 Score=43.14 Aligned_cols=144 Identities=15% Similarity=0.179 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999995765679999999963499999998655667775589999998510079999999999999999
Q 537021.9.peg.4 18 VNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSENAWRLSSEVFSVLLP 97 (241)
Q Consensus 18 ~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~a~~~~~~~~~~~~~ 97 (241)
T Consensus 236 ~~~~~~~~~~~~~~~~~G~~~~lA~~~~~~~~~~~~~m~~~G~-~~A~~~~v---G~~lGa~~~~~a~~~~~~~~~~~~~ 311 (412)
T TIGR00797 236 ILESLSFALVALLVARLGGSIALAAHQVALNVESLLFMPAFGL-GIAVSILV---GQALGAGDPKRAKEVARVALKLSLL 311 (412)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999873167324677899999999999999899-99999999---9985146878999999999999999
Q ss_pred HHHHHHHHHHHHHHH---HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999987143---3210247632102468889999999999999899999999999999986899867778
Q 537021.9.peg.4 98 ILMVMIMVIELVLPL---LVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFIACMPSM 170 (241)
Q Consensus 98 ~~~~i~~l~~ifap~---~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~F~~~a~~pi 170 (241)
T Consensus 312 ~~~~~~~~~~~~~~~g~Pi~~-lF----t~d~~v~~~~~~~l~~~~~~~~~~~~~~v~~G~lrG~G~~~~~~~~~~ 382 (412)
T TIGR00797 312 LGLVLAIILILFREVGLPIAR-LF----TNDPEVLELAASYLIFVALFQFSDGIQFVLSGVLRGAGDTKVILIITF 382 (412)
T ss_pred HHHHHHHHHHHHCCCCCCHHH-HH----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999983023642455-50----795769999999999999999877899999999983272579999999