Query 537021.9.peg.476_1
Match_columns 241
No_of_seqs 114 out of 1668
Neff 7.3
Searched_HMMs 39220
Date Wed May 25 03:50:07 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_476.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01695 mviN integral membra 100.0 0 0 362.2 28.9 236 4-240 1-247 (538)
2 COG0728 MviN Uncharacterized m 100.0 0 0 356.2 28.3 230 2-240 6-235 (518)
3 pfam03023 MVIN MviN-like prote 100.0 0 0 308.4 24.6 201 30-240 1-201 (452)
4 pfam03023 MVIN MviN-like prote 99.8 1.5E-14 3.9E-19 97.8 27.0 209 4-225 199-407 (452)
5 TIGR02900 spore_V_B stage V sp 99.7 3.6E-14 9.1E-19 95.8 24.9 215 6-233 2-217 (493)
6 PRK10459 colanic acid exporter 99.6 3.3E-12 8.5E-17 85.0 25.5 200 6-225 210-411 (492)
7 PRK01766 multidrug efflux prot 99.6 1.2E-11 3.1E-16 81.9 27.9 222 6-240 12-239 (452)
8 PRK09575 vmrA multidrug efflux 99.6 5.2E-12 1.3E-16 83.9 24.7 221 5-240 13-240 (456)
9 COG0728 MviN Uncharacterized m 99.6 9.7E-12 2.5E-16 82.4 25.2 223 4-240 233-456 (518)
10 PRK10189 hypothetical protein; 99.6 5.1E-11 1.3E-15 78.5 27.1 203 4-217 33-236 (481)
11 TIGR01695 mviN integral membra 99.6 5.3E-11 1.4E-15 78.4 26.9 227 2-238 243-472 (538)
12 COG0534 NorM Na+-driven multid 99.6 6.9E-11 1.7E-15 77.7 27.3 221 6-240 20-244 (455)
13 PRK10367 DNA-damage-inducible 99.5 1.3E-10 3.4E-15 76.1 26.2 221 5-240 11-235 (439)
14 TIGR00797 matE MATE efflux fam 99.5 1.4E-10 3.6E-15 76.1 25.5 212 17-240 6-225 (412)
15 PRK09575 vmrA multidrug efflux 99.5 2E-10 5.2E-15 75.1 26.2 211 4-229 234-447 (456)
16 PRK01766 multidrug efflux prot 99.5 9.8E-10 2.5E-14 71.4 26.7 194 16-225 248-443 (452)
17 PRK10459 colanic acid exporter 99.5 4.6E-10 1.2E-14 73.2 24.4 205 4-240 6-210 (492)
18 PRK10189 hypothetical protein; 99.4 1.1E-08 2.9E-13 65.6 28.4 205 15-235 273-477 (481)
19 COG2244 RfbX Membrane protein 99.4 1E-08 2.6E-13 65.8 27.5 152 2-173 5-156 (480)
20 PRK00187 multidrug efflux prot 99.4 1E-08 2.5E-13 65.9 27.1 203 5-221 12-215 (462)
21 COG2244 RfbX Membrane protein 99.4 3.9E-09 1E-13 68.1 24.8 198 4-221 214-411 (480)
22 PRK00187 multidrug efflux prot 99.4 1.8E-08 4.7E-13 64.4 28.2 194 13-216 245-439 (462)
23 pfam01943 Polysacc_synt Polysa 99.3 1.5E-08 3.9E-13 64.9 26.1 207 5-240 1-207 (272)
24 pfam01554 MatE MatE. The MatE 99.3 1.9E-09 4.8E-14 69.9 20.2 151 18-178 7-157 (161)
25 COG0534 NorM Na+-driven multid 99.3 2.3E-08 5.8E-13 63.9 24.1 193 15-223 252-445 (455)
26 TIGR02900 spore_V_B stage V sp 99.2 9E-08 2.3E-12 60.6 24.5 209 5-231 224-443 (493)
27 PRK10367 DNA-damage-inducible 98.9 3.3E-06 8.4E-11 52.1 26.6 186 16-219 244-429 (439)
28 TIGR00797 matE MATE efflux fam 98.3 0.00014 3.5E-09 43.1 22.8 144 18-170 236-382 (412)
29 KOG1347 consensus 94.6 0.089 2.3E-06 27.7 5.3 191 16-222 40-231 (473)
30 pfam04506 Rft-1 Rft protein. 90.3 1 2.6E-05 21.9 19.5 127 82-220 324-453 (533)
31 pfam10997 DUF2837 Protein of u 87.4 1.7 4.2E-05 20.7 18.0 73 147-219 163-247 (254)
32 KOG2864 consensus 77.0 4.4 0.00011 18.4 16.4 25 134-158 366-390 (530)
33 pfam10951 DUF2776 Protein of u 76.4 2.2 5.7E-05 20.0 2.6 191 34-232 95-293 (347)
34 TIGR01404 FlhB_rel_III type II 73.3 5.5 0.00014 17.9 10.3 40 198-237 189-234 (346)
35 TIGR02140 permease_CysW sulfat 54.0 13 0.00034 15.8 8.2 118 99-232 19-146 (275)
36 TIGR02493 PFLA pyruvate format 39.5 16 0.00042 15.3 1.5 35 101-135 155-189 (243)
37 TIGR02615 spoVE stage V sporul 36.8 25 0.00065 14.2 5.6 167 39-235 31-218 (356)
38 COG4792 EscU Type III secretor 32.4 30 0.00077 13.8 9.2 24 198-221 190-213 (349)
39 PRK09584 tppB putative tripept 31.4 31 0.0008 13.7 6.4 49 165-213 318-367 (500)
40 KOG3236 consensus 29.5 30 0.00076 13.9 1.5 32 147-178 148-180 (225)
41 TIGR00353 nrfE cytochrome c-ty 27.8 31 0.00079 13.8 1.3 198 8-223 223-429 (590)
42 TIGR01434 glu_cys_ligase gluta 25.5 40 0.001 13.2 1.5 28 20-50 75-102 (518)
43 TIGR02409 carnitine_bodg gamma 24.3 12 0.0003 16.1 -1.4 32 17-48 157-188 (384)
44 pfam03390 2HCT 2-hydroxycarbox 21.0 50 0.0013 12.6 9.8 94 5-109 116-209 (414)
No 1
>TIGR01695 mviN integral membrane protein MviN; InterPro: IPR004268 The sequencing of a number of pathogenic bacterial genomes has led to novel virulence proteins being discovered that are yet to be biochemically characterised. One example is the MviN family of proteins, first described in Salmonella , and conserved across a wide variety of pathogens in both animals and plants. Further work on these proteins of as yet unknown function has revealed they are integral membrane molecules, and are part of an operon essential in at least one species . ; GO: 0009405 pathogenesis, 0016021 integral to membrane.
Probab=100.00 E-value=0 Score=362.20 Aligned_cols=236 Identities=26% Similarity=0.492 Sum_probs=211.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 99999999999999999999999999999957656799999999634999999986556677755899999985100799
Q 537021.9.peg.4 4 KLVRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSEN 83 (241)
Q Consensus 4 ~l~r~~~~i~~~tl~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~ 83 (241)
|+.|++.+++.+|+.||++||+||.++|+.||||..+|||++|+++||++|++++|+|||++++|||.|.|+++++++|+
T Consensus 1 sl~k~~~~v~~~TL~SRi~GfvR~~i~a~~fGag~~~DAF~vA~~~Pn~~RrlfaGiEGA~~~aFvP~f~~~~~~~g~~~ 80 (538)
T TIGR01695 1 SLLKSTLIVSLGTLFSRILGFVRDAIIASAFGAGLVADAFNVAFKIPNLLRRLFAGIEGAFSSAFVPVFKKAKKKEGEKE 80 (538)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 92899999999999999999999999998836770799999999988999999852302477889999999996155578
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99-999999999999999999999987143321024763-210246-888999999999999989999999999999998
Q 537021.9.peg.4 84 AW-RLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPG-FPYQSD-EYFLTVQLSRVVMPSIFFISLASLVTGILFASG 160 (241)
Q Consensus 84 a~-~~~~~~~~~~~~~~~~i~~l~~ifap~~v~~l~apG-f~~~~~-~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~ 160 (241)
++ .+.+.+.+.+...+..++++..+++|++. .+++|| +.+|.+ ++++|++++|+++|++.++++.++..|+||+++
T Consensus 81 ~~~~f~~~~~~l~~~~~~l~~~~~~~~a~~~~-~l~a~g~~~~~~~nk~~~a~~l~~~~~pyl~l~sL~~~~~~~Ln~~~ 159 (538)
T TIGR01695 81 ARRAFAEKVLTLLILVLLLVVLLGIFFAPIVI-SLLAPGLFADDAANKFSLAVSLLRITFPYLLLISLAAVFGAILNARE 159 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999999999999999999999788899-73176435740245899999999999999999999999999997755
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCC
Q ss_conf 68998677788999999999999960465573168-----999999999999999999999999739---8777768899
Q 537021.9.peg.4 161 RYFIACMPSMVIHILPIFVLTYALCYGSNMHKAEM-----IYLLCWGVFLAHAVYFWILYLSAKKSG---VELRFQYPRL 232 (241)
Q Consensus 161 ~F~~~a~~pi~~Ni~~I~~~~~~~~~~~~~~~~~~-----i~~la~g~~lg~~~q~l~~~~~l~k~g---~~~~~~~~~~ 232 (241)
||++|+++|+++|+.+|.++.+..+..++....+. -..|+||+++|+++|+++|+|.++|.| ++++|++++.
T Consensus 160 ~F~~ps~~P~l~N~~~I~~l~~~~~~~~~~~~~g~~~~~~~~LL~~gvl~GG~~Q~l~~~~~l~~~G~R~~~~~prf~~~ 239 (538)
T TIGR01695 160 RFFIPSFSPVLFNISVIVSLLFLDVSLGQLALAGMYLALIELLLAIGVLIGGVAQLLIQLPALRKAGIRGLLLKPRFNFR 239 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCC
T ss_conf 55256799999999999999999863012466667899999999999999999999999999710673035531010335
Q ss_pred CHHHHHHC
Q ss_conf 98998542
Q 537021.9.peg.4 233 TCNVKLFL 240 (241)
Q Consensus 233 ~~~~k~~l 240 (241)
||++|+++
T Consensus 240 ~~~l~~~l 247 (538)
T TIGR01695 240 DPGLKRFL 247 (538)
T ss_pred CHHHHHHH
T ss_conf 45899999
No 2
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=0 Score=356.17 Aligned_cols=230 Identities=29% Similarity=0.548 Sum_probs=213.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 89999999999999999999999999999999576567999999996349999999865566777558999999851007
Q 537021.9.peg.4 2 LMKLVRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGS 81 (241)
Q Consensus 2 ~m~l~r~~~~i~~~tl~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~ 81 (241)
.||+.|++..++.+|++||++||+||.++|+.||||..+|||++|+++||+++++++ ||+++++|||+|.|+++++++
T Consensus 6 ~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfa--egafs~aFVPv~~~~~~~~~~ 83 (518)
T COG0728 6 KMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFA--EGAFSSAFVPVLAEAKKKEGE 83 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHCCHH
T ss_conf 788999999999999999999999999999996776688999999972899999984--636766666789999870605
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999871433210247632102468889999999999999899999999999999986
Q 537021.9.peg.4 82 ENAWRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGR 161 (241)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~ 161 (241)
|+++++.+.+.+.+..++..+++++++++|++++.+.+||| +++++ .+|+.++||++|++.+++++++.+|+||++||
T Consensus 84 ~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~-~~~~~-~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~ 161 (518)
T COG0728 84 EAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGF-DETDK-FLAVLLTRILFPYLLFISLSALFGAILNSRNR 161 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
T ss_conf 57999999999999999999999999988999999717897-51568-99999999999999999999999999840372
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHC
Q ss_conf 8998677788999999999999960465573168999999999999999999999999739877776889998998542
Q 537021.9.peg.4 162 YFIACMPSMVIHILPIFVLTYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGVELRFQYPRLTCNVKLFL 240 (241)
Q Consensus 162 F~~~a~~pi~~Ni~~I~~~~~~~~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k~g~~~~~~~~~~~~~~k~~l 240 (241)
|+.|+++|+++|+++|...++.. +.. .. .+++++||+++|+++|+++|+|.+||.|..++++|+++|+++|+++
T Consensus 162 F~~~a~aPvl~Nv~~I~~~l~~~---~~~-~~-~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~~~~lk~~~ 235 (518)
T COG0728 162 FFIPAFAPVLLNVSVIGLALFLG---PYF-DP-PLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFKDPGLKRFL 235 (518)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHC---CCH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 12044649999999999999854---100-04-7899999999999999999999999836544787888715599999
No 3
>pfam03023 MVIN MviN-like protein. Deletion of the mviN virulence gene in Salmonella enterica serovar. Typhimurium greatly reduces virulence in a mouse model of typhoid-like disease. Open reading frames encoding homologues of MviN have since been identified in a variety of bacteria, including pathogens and non-pathogens and plant-symbionts. In the nitrogen-fixing symbiont Rhizobium tropici, mviN is required for motility. The MviM protein is predicted to be membrane-associated.
Probab=100.00 E-value=0 Score=308.37 Aligned_cols=201 Identities=27% Similarity=0.510 Sum_probs=187.3
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99995765679999999963499999998655667775589999998510079999999999999999999999999987
Q 537021.9.peg.4 30 MAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSENAWRLSSEVFSVLLPILMVMIMVIELV 109 (241)
Q Consensus 30 ~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~l~~if 109 (241)
+|+.||+|.++|||++|+++||+++++++ ||+++++|||.|+|.++ +|+|+++++.+++++++...+..+++++++|
T Consensus 1 iA~~fGa~~~~DAf~~A~~iPn~l~~l~~--~Gals~afIP~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~f 77 (452)
T pfam03023 1 IAAYFGAGPLADAFNVAFRIPNLLRRLFA--EGAFSSAFVPVFAELKQ-ADKDEAAEFVRRVSTLLIGVLLLVTLLGILA 77 (452)
T ss_pred CHHHHCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 94997878486999999998999999999--99999999999999985-3969999999999999999999999999999
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 14332102476321024688899999999999998999999999999999868998677788999999999999960465
Q 537021.9.peg.4 110 LPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFIACMPSMVIHILPIFVLTYALCYGSN 189 (241)
Q Consensus 110 ap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~F~~~a~~pi~~Ni~~I~~~~~~~~~~~~ 189 (241)
+|+++. +++||| |+|+.+++++++|+++|+++|++++++++|+||+||||..|+++|+++|+++|.++++..+..+
T Consensus 78 ap~lv~-l~a~Gf--~~~~~~la~~l~ri~~p~i~f~~l~a~~~~~Lna~~~F~~~a~~pi~~N~~~I~~ll~~~~~~g- 153 (452)
T pfam03023 78 APWVIR-LLAPGF--DAETFSLTVSLLRITFPYLLLVSLSAVFGAVLNARKKFFAPAFSPVLLNIGVILTLLFLANYFG- 153 (452)
T ss_pred HHHHHH-HHCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_conf 999999-985887--5468999999999999999999999999999988388555787589899999999999998556-
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHC
Q ss_conf 573168999999999999999999999999739877776889998998542
Q 537021.9.peg.4 190 MHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGVELRFQYPRLTCNVKLFL 240 (241)
Q Consensus 190 ~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k~g~~~~~~~~~~~~~~k~~l 240 (241)
...+++++||+++|+++|+++|+|.++|.|+|+|+++|++||++|+++
T Consensus 154 ---~~~i~~la~g~~~G~~~q~l~~~~~l~k~g~~~~~~~~~~~~~lk~~~ 201 (452)
T pfam03023 154 ---REPIYGLAIGVLIGGVLQLLVQLPFLRKAGLLLKPRFNFRDKGVKRFL 201 (452)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf ---189999999999999999999999999829964554354543688999
No 4
>pfam03023 MVIN MviN-like protein. Deletion of the mviN virulence gene in Salmonella enterica serovar. Typhimurium greatly reduces virulence in a mouse model of typhoid-like disease. Open reading frames encoding homologues of MviN have since been identified in a variety of bacteria, including pathogens and non-pathogens and plant-symbionts. In the nitrogen-fixing symbiont Rhizobium tropici, mviN is required for motility. The MviM protein is predicted to be membrane-associated.
Probab=99.75 E-value=1.5e-14 Score=97.80 Aligned_cols=209 Identities=12% Similarity=0.152 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 99999999999999999999999999999957656799999999634999999986556677755899999985100799
Q 537021.9.peg.4 4 KLVRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSEN 83 (241)
Q Consensus 4 ~l~r~~~~i~~~tl~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~ 83 (241)
++.|-..-...+....++- .+=|..+|...+.|..+ +++.|.++-++-..+++. +++++..|.++|..+++|+|+
T Consensus 199 ~~~~l~~P~~l~~~~~qin-~lvd~~~AS~l~~G~vs-~l~yA~rl~~lP~gi~~v---ai~tv~~P~lS~~~~~~d~~~ 273 (452)
T pfam03023 199 RFLALALPTLLGVSVSQLN-LLIDTALASFLAEGSIS-YLYYADRIYQLPLGIFGV---SVSTVLLPRLSRHAKDGDWDE 273 (452)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCCCHHH
T ss_conf 9999999999999999999-99999998735432799-999998887878999998---559988899999987689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999987143321024763210246888999999999999989999999999999998689
Q 537021.9.peg.4 84 AWRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYF 163 (241)
Q Consensus 84 a~~~~~~~~~~~~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~F~ 163 (241)
..+..++.+.....+....++..++.++++++.++..| ..|+|.-+.+...++...+.++++++.-+..-..+|+||-.
T Consensus 274 ~~~~l~~~l~~~~~l~iPa~v~l~vl~~pIv~llf~rG-~F~~~~~~~ta~~L~~y~~gl~~~~l~~il~r~fyA~~dtk 352 (452)
T pfam03023 274 FLDLLDQAIRLTLLLMIPASFGLLVLSDPIVSVLYERG-AFSPEDVTATAGVLAAYALGLIPYALVKLLSRVFYAREDTK 352 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 99999999999999999999999997899999998048-99999999999999999998899999999998858657858
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 98677788999999999999960465573168999999999999999999999999739877
Q 537021.9.peg.4 164 IACMPSMVIHILPIFVLTYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGVEL 225 (241)
Q Consensus 164 ~~a~~pi~~Ni~~I~~~~~~~~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k~g~~~ 225 (241)
.|....++.-++.|..-+...+ ..+..+++.++.++..++..+++..+||.....
T Consensus 353 tP~~~s~i~~~~ni~l~~~l~~-------~~g~~GlAlatsis~~v~~~ll~~~l~k~~~~~ 407 (452)
T pfam03023 353 TPFKISLISAVLNILLSLLLLP-------PLGVVGLALATSLSAWINLVFLYYILRKRLGGH 407 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 8999999999999999999999-------999999999999999999999999999865877
No 5
>TIGR02900 spore_V_B stage V sporulation protein B; InterPro: IPR014249 This entry represents SpoVB, which is the stage V sporulation protein B of the bacterial endospore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with high sequence similarity to SpoVB exist, such as YkvU from B. subtilis and a number Clostridium proteins, but they are excluded from this entry. .
Probab=99.72 E-value=3.6e-14 Score=95.77 Aligned_cols=215 Identities=15% Similarity=0.244 Sum_probs=178.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 99999999999999999999999999995765679999999963499999998655667775589999998510079999
Q 537021.9.peg.4 6 VRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSENAW 85 (241)
Q Consensus 6 ~r~~~~i~~~tl~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~a~ 85 (241)
.|.++++++..++.|++||+=.+++|...|+ |-.--|..|.=+-+++-.+.. +.+..|.==.-+|+..+||+++..
T Consensus 2 lkg~fiL~~a~~iTr~LGFifri~ls~~LGa-EGvGLY~l~~P~y~L~itL~~---~Gl~~AISk~~Ae~~a~~D~~n~~ 77 (493)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGA-EGVGLYGLAMPIYFLFITLTT---GGLPVAISKFVAEASAKNDKKNIK 77 (493)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 0489999999888467789889988654236-631178889999999999986---539999999999987137744668
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998714332102476321024688899999999999998999999999999999868998
Q 537021.9.peg.4 86 RLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFIA 165 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~F~~~ 165 (241)
|...--..+..+.+..++.+..+.+|.+-..++ + |++. .+=+++..|.+++..+++++.|+-|...|-.+|
T Consensus 78 kil~~S~~f~~~~s~~v~~~~f~~~p~Ia~~ll-~------D~R~--~~~l~~i~P~~~~iA~SsvLkGYFqG~~~~~~~ 148 (493)
T TIGR02900 78 KILKVSLIFTLIWSLIVTAIVFLLAPFIASTLL-K------DERS--LYSLLVICPAVPIIALSSVLKGYFQGISNMKPP 148 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C------CHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 999999999999999999999999899998516-7------6078--999999832899999988888875535505467
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCC
Q ss_conf 677788999999999999960465573168999999999999999999999999739-87777688999
Q 537021.9.peg.4 166 CMPSMVIHILPIFVLTYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSG-VELRFQYPRLT 233 (241)
Q Consensus 166 a~~pi~~Ni~~I~~~~~~~~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k~g-~~~~~~~~~~~ 233 (241)
|.++++..++-|...........+.+-...+-+.-.+.++|.++-++.++..-+|+. ++.|.++....
T Consensus 149 A~~qv~Eq~vRI~~~~~li~~F~~~~~e~ava~A~~~~~lGE~~SLl~l~~~f~~~~~~~~r~~~~~~~ 217 (493)
T TIGR02900 149 AYIQVIEQIVRISVVALLISLFLPYGVEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSISIRKPFFDYK 217 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCC
T ss_conf 899999999999999999998841368899999999999999999999999988860025315634555
No 6
>PRK10459 colanic acid exporter; Provisional
Probab=99.63 E-value=3.3e-12 Score=84.96 Aligned_cols=200 Identities=14% Similarity=0.122 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 99999999999999999999999999995765679999999963499999998655667775589999998510079999
Q 537021.9.peg.4 6 VRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSENAW 85 (241)
Q Consensus 6 ~r~~~~i~~~tl~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~a~ 85 (241)
.+-...+...++++.+..-.-+.++++.+|++ +..-|+.|+++.+....... ++++.++-|.+++.+ +|+|+.+
T Consensus 210 ~~Fg~~l~~~~l~~~i~~n~d~liiG~~~g~~-~lG~Y~~A~~l~~~p~~~i~---~~i~~V~~P~~s~~q--~d~~~l~ 283 (492)
T PRK10459 210 LSFGAFQTADRIINYLNTNIDTILIGRILGAE-VLGGYNLAYNVATVPPLKIN---PIITRVAFPVFAKIQ--DDTEKLR 283 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH--CCHHHHH
T ss_conf 98879999999999999985999999972898-86599999999999999999---999877999999983--5689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998714332102476321024688899999999999998999999999999999868998
Q 537021.9.peg.4 86 RLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFIA 165 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~F~~~ 165 (241)
+...+.+.....+...+.+...+.||+++..++ +|+..-++..+|++.+...+.+++...+.++++++|--..
T Consensus 284 ~~~~~~~~~~~~i~~P~~~gla~~A~~~V~llf-------G~kW~~av~~l~iL~l~~~~~~~~~~~~~ll~a~Gr~~~~ 356 (492)
T PRK10459 284 VGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVF-------GEKWNSAIPVLQLLCIVGLLRSVGNPIGSLLLAKGRADLS 356 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 999999999999999999999998799999960-------7207768999999999999999999999999855974469
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCC
Q ss_conf 6777889999999999999604655731689999999999999999999999997--39877
Q 537021.9.peg.4 166 CMPSMVIHILPIFVLTYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKK--SGVEL 225 (241)
Q Consensus 166 a~~pi~~Ni~~I~~~~~~~~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k--~g~~~ 225 (241)
-...++.-...+..++.+.+. .++.+.+|+.++..++.+.+.+....| .|.++
T Consensus 357 ~~~~~~~~~i~~~~i~~~~~~-------~G~~gva~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (492)
T PRK10459 357 FKWNVFKTFLFIPAIVIGGQL-------AGLIGVALGFLLVSIINTILGYFLMIKPVLGSSY 411 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 999999999999999999987-------1599999999999999999999999999957459
No 7
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.62 E-value=1.2e-11 Score=81.90 Aligned_cols=222 Identities=10% Similarity=0.045 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 99999999999999999999999999995765679999999963499999998655667775589999998510079999
Q 537021.9.peg.4 6 VRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSENAW 85 (241)
Q Consensus 6 ~r~~~~i~~~tl~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~a~ 85 (241)
.|=+.=+.+..+..-+.+++-...++ .+|+.+ ..|...+..+-.++..+. ..+.+..-+..+|+.-++|+|++.
T Consensus 12 l~la~P~~~~~l~~~~~~~vD~~~vg-~lg~~a-lAav~~~~~i~~~~~~~~----~gl~~g~~~lvsq~~Ga~~~~~~~ 85 (452)
T PRK01766 12 LALALPILLAQVAQTAMGFVDTVMAG-GVSATD-LAAVAIGTSIWLPVILFG----HGLLLALTPIVAQLNGAGRRERIA 85 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHH-HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999999999999999999999987-208999-999999999999999999----999999999999997899889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998714332102476321024688899999999999998999999999999999868998
Q 537021.9.peg.4 86 RLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFIA 165 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~F~~~ 165 (241)
+....-+.....+..++.++.+.+.|++.. ++ ..|+|..+.+.++++++.+..++..+.....+++++.++-..|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~-l~----g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~l~~~g~t~~~ 160 (452)
T PRK01766 86 HQVRQGLWLALFLSVLIMLVLYNAVPPILN-MM----NLEPDVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPT 160 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 999999999999999999999999999999-81----9829999999999999998789999999999998847984999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--C--CCCCCCC-HHHHHH
Q ss_conf 67778899999999999996-0465573168999999999999999999999999739877--7--7688999-899854
Q 537021.9.peg.4 166 CMPSMVIHILPIFVLTYALC-YGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGVEL--R--FQYPRLT-CNVKLF 239 (241)
Q Consensus 166 a~~pi~~Ni~~I~~~~~~~~-~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k~g~~~--~--~~~~~~~-~~~k~~ 239 (241)
....+..|+..++.-..... ..+ -+..++.+.||++.++..+..+......+|..... + .++.+.| +.+|++
T Consensus 161 m~~~~~~~ilNi~l~~~lIfG~~g--~p~lGv~GaA~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 238 (452)
T PRK01766 161 MVIGFLGLLVNIPLNYIFIYGKFG--FPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRL 238 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHCCCCHHHHHHH
T ss_conf 999999999999888898760357--630068899999999999999999999998455002000021032349999999
Q ss_pred C
Q ss_conf 2
Q 537021.9.peg.4 240 L 240 (241)
Q Consensus 240 l 240 (241)
+
T Consensus 239 ~ 239 (452)
T PRK01766 239 L 239 (452)
T ss_pred H
T ss_conf 9
No 8
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.60 E-value=5.2e-12 Score=83.88 Aligned_cols=221 Identities=10% Similarity=-0.020 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999999999999999995----7656799999999634999999986556677755899999985100
Q 537021.9.peg.4 5 LVRNFFTLVASESVNRCLGFVRASLMAAVF----GVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNG 80 (241)
Q Consensus 5 l~r~~~~i~~~tl~SrilGf~Re~~~A~~f----Ga~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~ 80 (241)
+.|....++.=++++-++--.-.++=+.+. |+. ...|-..++.+-.++..+.. .++..--...++..-++|
T Consensus 13 I~k~~~~laiP~i~~~l~~~ly~ivD~~fvG~~~G~~-alAAv~~~~pi~~~~~~~~~----~lg~G~~~lis~~~G~~~ 87 (456)
T PRK09575 13 IYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAE-GLAGINMAWPVIGIILGIGL----MVGMGTGSLLSIYRGEGD 87 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCC
T ss_conf 8999999999999999999999999999944726898-99999999999999999999----999999999999976999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999999999999999999999987143321024763210246888999999999999989999999999999998
Q 537021.9.peg.4 81 SENAWRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASG 160 (241)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~ 160 (241)
+|++++..+..+.....+..++++++++++|+++. ++ ..++|..+++.+++|+.++..++..+....++++++++
T Consensus 88 ~~~a~~~~~~~~~~~~~~~~i~~~~~~~~~~~il~-~l----ga~~~v~~~a~~Yl~i~~~g~~~~~~~~~~~~~lra~G 162 (456)
T PRK09575 88 LQKAKTILTTGLLLLLLLGPIVSIILWLFADDFLL-AQ----GAEGRTLELGLQYIQVLTWGCLFTIGAIALPMLVRNDE 162 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999999999999999998-83----97899999999999999998899999999999998289
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCC-HHHH
Q ss_conf 6899867778899999999999996046557316899999999999999999999999973--987777688999-8998
Q 537021.9.peg.4 161 RYFIACMPSMVIHILPIFVLTYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKS--GVELRFQYPRLT-CNVK 237 (241)
Q Consensus 161 ~F~~~a~~pi~~Ni~~I~~~~~~~~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k~--g~~~~~~~~~~~-~~~k 237 (241)
+-..|....++.|+..|+.-..... . ...++.+.|+++.++-.+..++......|. ..+++++..+.| +.+|
T Consensus 163 ~~~~~~~~~i~~~i~NiiLd~lfI~-~----~~lGv~GAAlATvisq~i~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 237 (456)
T PRK09575 163 SPNLATGLMVLGALINIVLDYLFIG-V----LDWGLTGAAIATALAQLVVTILGLGYFFSSRANIKLSLKELLFNWSLAP 237 (456)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHC-C----CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCCHHHHH
T ss_conf 9830589999977889989999972-0----8998644999999999999999999999068614753763115699999
Q ss_pred HHC
Q ss_conf 542
Q 537021.9.peg.4 238 LFL 240 (241)
Q Consensus 238 ~~l 240 (241)
+.+
T Consensus 238 ~i~ 240 (456)
T PRK09575 238 QIV 240 (456)
T ss_pred HHH
T ss_conf 999
No 9
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.59 E-value=9.7e-12 Score=82.40 Aligned_cols=223 Identities=12% Similarity=0.155 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 99999999999999999999999999999957656799999999634999999986556677755899999985100799
Q 537021.9.peg.4 4 KLVRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSEN 83 (241)
Q Consensus 4 ~l~r~~~~i~~~tl~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~ 83 (241)
++.+...-...++.+|++ ..+.|..+|+....|..+ .++.|.++-++=..+++. +++++..|.++|..+++|+++
T Consensus 233 ~~~~~~~p~~l~~sisQi-~lli~~~iAS~l~~Gsis-~l~YA~rl~qlPlGifgv---ai~tvllP~lSr~~~~~~~~~ 307 (518)
T COG0728 233 RFLKLMLPALLGVSISQI-NLLIDTAIASFLAEGSVS-WLYYADRLYQLPLGIFGV---ALSTVLLPSLSRHAANGDWPE 307 (518)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCCCHHH
T ss_conf 999999999999999999-999999999860135099-999999999715899999---999998799999750676598
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999987143321024763210246888999999999999989999999999999998689
Q 537021.9.peg.4 84 AWRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYF 163 (241)
Q Consensus 84 a~~~~~~~~~~~~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~F~ 163 (241)
..+..+.-+......+...++...+++++++..++..| ..+++....+.+.++.....++++++.-++.-+.+|+++-.
T Consensus 308 ~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG-~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~k 386 (518)
T COG0728 308 FLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERG-AFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTK 386 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999999999999998999999995358-99857799999999999874489999999999999803877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCHHHHHHC
Q ss_conf 986777889999999999999604655731689999999999999999999999997398-77776889998998542
Q 537021.9.peg.4 164 IACMPSMVIHILPIFVLTYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGV-ELRFQYPRLTCNVKLFL 240 (241)
Q Consensus 164 ~~a~~pi~~Ni~~I~~~~~~~~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k~g~-~~~~~~~~~~~~~k~~l 240 (241)
.|....++.-++.+..-++..+..+. .+++.++.+++.++....+..++|.+. .+...|+... ..|..+
T Consensus 387 tP~~i~ii~~~~n~~l~~~l~~~~~~-------~giala~s~a~~~~~~ll~~~l~k~~~~~~~~~~~~~~-~~k~~l 456 (518)
T COG0728 387 TPMKIAIISLVVNILLNLLLIPPLGH-------VGLALATSLAAWVNALLLYYLLRKRLVYLPGRGWGLFL-ILKLLL 456 (518)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH-HHHHHH
T ss_conf 37699999999999999997861352-------29999999999999999999999843778620035999-999999
No 10
>PRK10189 hypothetical protein; Provisional
Probab=99.57 E-value=5.1e-11 Score=78.45 Aligned_cols=203 Identities=9% Similarity=0.075 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 99999999999999999999999999999957656799999999634999999986556677755899999985100799
Q 537021.9.peg.4 4 KLVRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSEN 83 (241)
Q Consensus 4 ~l~r~~~~i~~~tl~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~ 83 (241)
++.+-+.=+....++.-+.|++-...++ ..|+.+.+ |--.+.++-.++..+. ..++...-+..+|+.-++|+|+
T Consensus 33 ~il~LA~Pi~l~~l~~~l~~~vDt~mvg-~lG~~alA-Avgl~~~i~~~~~~~~----~gl~~g~~~lvaq~~Ga~~~~~ 106 (481)
T PRK10189 33 EITPLAVPIFMENACVLLMGVLSTFLVS-WLGKEAMA-GVGLADSFNMVIMAFF----AAIDLGTTVVVAFSLGKRDRRR 106 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCCHHH
T ss_conf 9999999999999999999999999997-63899999-9999999999999999----9999999999999873999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999987143321024763210246888999999999999989999999999999998689
Q 537021.9.peg.4 84 AWRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYF 163 (241)
Q Consensus 84 a~~~~~~~~~~~~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~F~ 163 (241)
.++.....+.....+..++.+++.++.|+++. +++. ..|+|..+++..++++..+..++..+.....+++++.++-.
T Consensus 107 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~il~-l~~~--~~~~~v~~~a~~Yl~i~~~~~p~~~~~~~~~~~lrg~G~tk 183 (481)
T PRK10189 107 ARVAARQSLVIMTLFAVLLAVLIHFFGEQIID-FVAG--QATPEVKALALTYLELTVLSYPAAAITLIGSGALRGAGNTK 183 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 99999999999999999999999999999999-8757--99889999999999999999999999999999998778828
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 986777889999999999999-604655731689999999999999999999999
Q 537021.9.peg.4 164 IACMPSMVIHILPIFVLTYAL-CYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLS 217 (241)
Q Consensus 164 ~~a~~pi~~Ni~~I~~~~~~~-~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~ 217 (241)
.|....+..|++.|+.-.... ...+ -+..++.+.|+|++++..+..+.....
T Consensus 184 ~pm~i~~~~~ilNivln~ilIfG~~g--~P~lGv~GAAiAT~is~~i~~~~~~~~ 236 (481)
T PRK10189 184 IPLLINGGMNILNIIISSILIYGLFS--WQGLGFVGAGLGLTISRYIGAVAILWV 236 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999998602478--840038999999999999999999999
No 11
>TIGR01695 mviN integral membrane protein MviN; InterPro: IPR004268 The sequencing of a number of pathogenic bacterial genomes has led to novel virulence proteins being discovered that are yet to be biochemically characterised. One example is the MviN family of proteins, first described in Salmonella , and conserved across a wide variety of pathogens in both animals and plants. Further work on these proteins of as yet unknown function has revealed they are integral membrane molecules, and are part of an operon essential in at least one species . ; GO: 0009405 pathogenesis, 0016021 integral to membrane.
Probab=99.57 E-value=5.3e-11 Score=78.35 Aligned_cols=227 Identities=14% Similarity=0.170 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89999999999999999999999999--9999995765679999999963499999998655667775589999998510
Q 537021.9.peg.4 2 LMKLVRNFFTLVASESVNRCLGFVRA--SLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQN 79 (241)
Q Consensus 2 ~m~l~r~~~~i~~~tl~SrilGf~Re--~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~ 79 (241)
++++.+...-...+...+.+.-++-. ..+|..+-.|..+ +++.|.++-++-..++.. +++++.-|.++|..+++
T Consensus 243 l~~~l~~~~p~~lg~s~~q~~~l~~t~L~~~AS~l~~Gs~s-~~~yA~r~~~LP~gif~v---sl~~v~lP~~s~~~~~~ 318 (538)
T TIGR01695 243 LKRFLKLMLPTTLGVSASQITLLINTRLLALASFLEIGSVS-ALYYASRLYQLPLGIFGV---SLATVLLPKLSKHASEG 318 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999999999999999873155268999-999999999989999999---99999999999885026
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 07999999999999999999999999998714332102476321024688899999999999998999999999999999
Q 537021.9.peg.4 80 GSENAWRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFAS 159 (241)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~ 159 (241)
|.++.++..+.-+.....+....+....+.+++++..++..| ..++|....+.+.+......++++++..++.-+.+|+
T Consensus 319 ~~~~~~~~~~~~i~~~~~l~~P~s~~l~~ls~~I~~llf~~g-~F~~~~~~~ta~~L~~y~lGl~~~~l~~vL~~~fYA~ 397 (538)
T TIGR01695 319 NWNELEELLNQGIRLTLLLTIPSSFGLLVLSEPIVSLLFERG-AFSEEDALMTATILAAYALGLIFYSLQKVLLRAFYAR 397 (538)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 868999999999999999999999999998899999885378-8888899999999999999899999999998778755
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 868998677788999999999-9999604655731689999999999999999999999997398777768899989985
Q 537021.9.peg.4 160 GRYFIACMPSMVIHILPIFVL-TYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGVELRFQYPRLTCNVKL 238 (241)
Q Consensus 160 ~~F~~~a~~pi~~Ni~~I~~~-~~~~~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k~g~~~~~~~~~~~~~~k~ 238 (241)
+|-..|....++.-++.+..- ++...+. +.-+..+++....+.+.++..+.+..++|.+-..+ .....++..|-
T Consensus 398 ~d~~tP~~~~~~~~~~n~~l~GlCy~~l~----~~l~~~G~a~a~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~l~~~ 472 (538)
T TIGR01695 398 KDTKTPFIVSVISVVLNVLLSGLCYLLLI----FPLGLSGIALATSLAAIVSAVLLYLRLKKRLKGIL-DIGVLKKLLKL 472 (538)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
T ss_conf 30204899999999999999889999888----88736899999999999999999999865204776-13578999999
No 12
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.56 E-value=6.9e-11 Score=77.74 Aligned_cols=221 Identities=12% Similarity=0.107 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 99999999999999999999999999995765679999999963499999998655667775589999998510079999
Q 537021.9.peg.4 6 VRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSENAW 85 (241)
Q Consensus 6 ~r~~~~i~~~tl~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~a~ 85 (241)
.|-+.=+....++.-..+++-...++ .+| .+...|-..++.+-+++..+. ..+..+.-+..+|+.-++|+++++
T Consensus 20 ~~la~P~i~~~l~~~l~~~vD~~~vG-~~~-~~alaav~la~~i~~~~~~~~----~gl~~g~~~liaq~~Ga~~~~~~~ 93 (455)
T COG0534 20 LKLAIPIILGNLLQTLYGLVDTFMVG-HLG-AEALAAVGLANPIFFLIIAIF----IGLGTGTTVLVAQAIGAGDRKKAK 93 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999999999999999999999999-650-899999999999999999999----999999999999997499889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998714332102476321024688899999999999998999999999999999868998
Q 537021.9.peg.4 86 RLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFIA 165 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~F~~~ 165 (241)
+..+..+.....+...+.++.+.+.+++...+-+ ++|..+.+.+++|+.....++..++.+..+.+++++|-..|
T Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~-----~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~ 168 (455)
T COG0534 94 RVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGA-----PAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTP 168 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 9999999999999999999999969999998599-----76799999999999999999999999999999858991487
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--C-CCCCCCCCC-HHHHHHC
Q ss_conf 6777889999999999999604655731689999999999999999999999997398--7-777688999-8998542
Q 537021.9.peg.4 166 CMPSMVIHILPIFVLTYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGV--E-LRFQYPRLT-CNVKLFL 240 (241)
Q Consensus 166 a~~pi~~Ni~~I~~~~~~~~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k~g~--~-~~~~~~~~~-~~~k~~l 240 (241)
....++.|+..|+.-....... .+. .++.+.||++.++..+..+.....++|..- . .+.+..+.| +.+|+++
T Consensus 169 m~~~~~~~~lNi~Ln~llI~g~--~g~-lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (455)
T COG0534 169 MYILLLGNLLNIVLNYLLIFGL--FGG-LGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEIL 244 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC--CCH-HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHH
T ss_conf 9999999999999979999951--312-122209999999999999999999996343003554201479999999999
No 13
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.53 E-value=1.3e-10 Score=76.13 Aligned_cols=221 Identities=11% Similarity=0.006 Sum_probs=157.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 99999999999999999999999999999576567999999996349999999865566777558999999851007999
Q 537021.9.peg.4 5 LVRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSENA 84 (241)
Q Consensus 5 l~r~~~~i~~~tl~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~a 84 (241)
+.|-+.=+....+..-+.|++-...+++ +|......|--++..+-+++..+.. .++..-.+.-+|+.-++|+|++
T Consensus 11 l~~LA~P~i~~~l~~~l~~lvDt~~vG~-lg~~~~lAav~~~~~~~~~~~~~~~----~l~~g~~~lvAq~~Ga~~~~~~ 85 (439)
T PRK10367 11 LWHLALPMIFSNITVPLLGLVDTAVIGH-LDSPVYLGGVAVGATATSFLFMLLL----FLRMSTTGLTAQAYGAKNPQAL 85 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHH
T ss_conf 9999999999999999999999999618-8876999999999999999999999----9999999999999808999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999871433210247632102468889999999999999899999999999999986899
Q 537021.9.peg.4 85 WRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFI 164 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~F~~ 164 (241)
++....-+.+...+..++.++...+.+++.. ++ ..++|..+.+.+++|+..+..++..++....+++++.++=..
T Consensus 86 ~~~~~~~l~l~~~~g~~~~~~~~~~~~~~l~-~~----g~~~~v~~~a~~Yl~i~~~g~p~~~~~~~~~~~lrg~g~t~~ 160 (439)
T PRK10367 86 ARALVQPLLLALGAGALIALLRTPIIDLALH-IV----GGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARA 160 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 9999999999999999999999999999999-80----998666999999999999998999999999999987787088
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----CCCHHHHHHC
Q ss_conf 867778899999999999996046557316899999999999999999999999973987777688----9998998542
Q 537021.9.peg.4 165 ACMPSMVIHILPIFVLTYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGVELRFQYP----RLTCNVKLFL 240 (241)
Q Consensus 165 ~a~~pi~~Ni~~I~~~~~~~~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k~g~~~~~~~~----~~~~~~k~~l 240 (241)
|-...++.|+..|+.-.....- ...++.+.|++++++-.+...+.....+|.....+.+.+ ...+++|+++
T Consensus 161 pm~~~~~~~vlNiiLd~~fI~g-----~~lGv~GAA~AT~is~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il 235 (439)
T PRK10367 161 PVILLVVGNILNIVLDVWLVMG-----LHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISGEMLKTAWRGNFRRLL 235 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999987-----07632899999999999999999999999860301567763141499999999
No 14
>TIGR00797 matE MATE efflux family protein; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transporter activity, 0015297 antiporter activity, 0006855 multidrug transport, 0016020 membrane.
Probab=99.51 E-value=1.4e-10 Score=76.06 Aligned_cols=212 Identities=14% Similarity=0.074 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 999999999999999995765679999999-9634999999986556677755899999985100799999999999999
Q 537021.9.peg.4 17 SVNRCLGFVRASLMAAVFGVGKITDAFYTV-AYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSENAWRLSSEVFSVL 95 (241)
Q Consensus 17 l~SrilGf~Re~~~A~~fGa~~~~DAf~~A-~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~a~~~~~~~~~~~ 95 (241)
.+..=+--+=|..+.-+.|. .+.-|--++ ..+-.+.+.+.. .+.++..|.-+|..-++++|+.++...+.+.+.
T Consensus 6 ~~~q~~~~l~D~~~vG~lg~-~~Laav~~g~~~~~~~~~~~~~----gl~~a~~~~~aq~~Ga~~~~~~~~~~~~~~~la 80 (412)
T TIGR00797 6 NILQPLLGLVDTAFVGHLGP-VDLAAVGLGISSVFMLLISILL----GLGTATTALVAQAVGAGNRQRLGRQAQQSLLLA 80 (412)
T ss_pred HHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99998887986630023118-9999999999999999999999----999889999999883324899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999987143321024763210246888999999999999989999999999999998689986777889999
Q 537021.9.peg.4 96 LPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFIACMPSMVIHIL 175 (241)
Q Consensus 96 ~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~F~~~a~~pi~~Ni~ 175 (241)
..+...+.++.+.+.+.+.. +. | .++|..+++.+++|++.+.++.+.+.-...+.|+..++=..|....++.|+.
T Consensus 81 ~~lg~~~~~~~~~~~~~l~~-~~--~--~~~~~~~~a~~Yl~~~~~g~P~~~~~~~~~~~l~g~~~t~~p~~~~~~~~~~ 155 (412)
T TIGR00797 81 LLLGLPVLLVGLFFIDPLLS-LM--G--ADGEVAELAQEYLRILILGIPAYLLSFVLRGFLRGQGDTKTPMYITLIGNLL 155 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HC--C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999988888998-41--7--9888999899989999999999999999999974542258999999999999
Q ss_pred HHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCC--CCCCCCCHHHHHHC
Q ss_conf 9999999996-046557316899999999999999999999999973----98777--76889998998542
Q 537021.9.peg.4 176 PIFVLTYALC-YGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKS----GVELR--FQYPRLTCNVKLFL 240 (241)
Q Consensus 176 ~I~~~~~~~~-~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k~----g~~~~--~~~~~~~~~~k~~l 240 (241)
.|+.-..... ..+ -+..|+.+.||++.++..+.++++..+.+|. ..+.+ ...+...+.+|+++
T Consensus 156 Ni~L~~~li~G~fG--~P~lG~~GaA~At~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 225 (412)
T TIGR00797 156 NIVLDYILIFGKFG--FPELGIVGAALATVISYWLMFLLLLYYIKKSAQAKKIGLKWEGLLKPDWEVLKRLL 225 (412)
T ss_pred HHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99983898717888--71247776689999999999999999999712124321224443302589999999
No 15
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.51 E-value=2e-10 Score=75.15 Aligned_cols=211 Identities=14% Similarity=0.084 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999999999999---999957656799999999634999999986556677755899999985100
Q 537021.9.peg.4 4 KLVRNFFTLVASESVNRCLGFVRASL---MAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNG 80 (241)
Q Consensus 4 ~l~r~~~~i~~~tl~SrilGf~Re~~---~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~ 80 (241)
+..|....+..-+.+.....-+--.+ +...+|......||.++.++-++.+.... +++++.-|.-.+..-+++
T Consensus 234 ~~~~~i~~iG~p~~i~~~~~s~~~~~~n~~~~~~g~~~~vAa~~i~~~i~~~~~~~~~----Gl~~a~~~lvg~n~GA~~ 309 (456)
T PRK09575 234 SLAPQIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSSLTVGAFAIVGYLMVLYYLVAE----GIAEGMQPPVSYYFGARQ 309 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCC
T ss_conf 9999999984799999999999999999999997769999999999999999999999----998878999999856998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999999999999999999999987143321024763210246888999999999999989999999999999998
Q 537021.9.peg.4 81 SENAWRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASG 160 (241)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~ 160 (241)
.|+.++.....+.....+.....++.++|+++++. ++. ++|+|..+.+...+|+.....++.++.-+..+++|+-+
T Consensus 310 ~~rv~~~~~~~~~~~~~~~~~~~~l~~~f~~~l~~-lF~---~~d~~vi~~~~~~l~i~~~~~~~~g~~~v~~~~f~a~g 385 (456)
T PRK09575 310 YDNIKKLLKLAMKVSVIAGIAWVLLLNLFPETMVS-LFN---SGDPELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVN 385 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 89999999999999999999999999999999998-756---99889999999999999999999999999999998879
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 689986777889999999999999604655731689999999999999999999999997398777768
Q 537021.9.peg.4 161 RYFIACMPSMVIHILPIFVLTYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGVELRFQY 229 (241)
Q Consensus 161 ~F~~~a~~pi~~Ni~~I~~~~~~~~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k~g~~~~~~~ 229 (241)
|=..+.+..+..-++.+...+....+ .++.+.=|+..++.....++..+..+|.--|.|-+.
T Consensus 386 ~~~~~~~~sl~~~~i~lp~~~il~~~-------~G~~GiW~a~~is~~~~~~~~~~~~~r~~kkl~k~~ 447 (456)
T PRK09575 386 QGGKALFISIGNMLIQLPFLFILPKW-------LGIDGVWLAMPLSNIALSLVVAPMLWRDLKKLKKKH 447 (456)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 94999999999999999999999999-------817599999999999999999999999999985428
No 16
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.46 E-value=9.8e-10 Score=71.40 Aligned_cols=194 Identities=10% Similarity=0.035 Sum_probs=151.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999957656799999999634999999986556677755899999985100799999999999999
Q 537021.9.peg.4 16 ESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSENAWRLSSEVFSVL 95 (241)
Q Consensus 16 tl~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~a~~~~~~~~~~~ 95 (241)
...+...++.=-..+...+|+ ....||.++.++-++.+.... +++++.-|.-.+..-++++|++++.....+...
T Consensus 248 ~~~~~~~~~~~~~~~~~~~G~-~~~Aa~~i~~~i~~l~~~~~~----g~~~a~~~~vg~~~Ga~~~~~a~~~~~~~~~~~ 322 (452)
T PRK01766 248 AIFFEVSLFAVVALLVSPLGT-VTVAAHQIALNFSSLLFMLPM----SVAMALTIRVGFELGAGRYLDARQAAYIGLAVG 322 (452)
T ss_pred HHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 999999999999999974687-999999999999999988888----788889899999974999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999987143321024763210246888999999999999989999999999999998689986777889999
Q 537021.9.peg.4 96 LPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFIACMPSMVIHIL 175 (241)
Q Consensus 96 ~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~F~~~a~~pi~~Ni~ 175 (241)
........++.+++.+++.. ++ ++|+|..+++..++++.....++.+...+..|++++-+|-..|....+...-+
T Consensus 323 ~~~~~~~~~~~~~~~~~i~~-lf----t~d~~v~~~~~~~l~~~~~~~~~~~~~~v~~g~lrg~G~t~~~~~~~~~~~w~ 397 (452)
T PRK01766 323 LAMALLTAILLVLFREQIAL-LY----TDDPEVIALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWV 397 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999999999997787877-45----99899999999999999999999999999999989556459999999999999
Q ss_pred H-HHH-HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9-999-9999960465573168999999999999999999999999739877
Q 537021.9.peg.4 176 P-IFV-LTYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGVEL 225 (241)
Q Consensus 176 ~-I~~-~~~~~~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k~g~~~ 225 (241)
+ +.. .++...+ ..++.+.=||..++..++.++.++..||..-|.
T Consensus 398 i~iPl~~ll~~~~------~~G~~GiW~~~~~~~~~~~~~~~~r~r~~~~~~ 443 (452)
T PRK01766 398 IGLPLGYILALTD------PMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQP 443 (452)
T ss_pred HHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 9999999999986------687578999999999999999999999987071
No 17
>PRK10459 colanic acid exporter; Provisional
Probab=99.45 E-value=4.6e-10 Score=73.19 Aligned_cols=205 Identities=12% Similarity=0.077 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 99999999999999999999999999999957656799999999634999999986556677755899999985100799
Q 537021.9.peg.4 4 KLVRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSEN 83 (241)
Q Consensus 4 ~l~r~~~~i~~~tl~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~ 83 (241)
|..|+....+..+...++.+|+-..++|...+..+.. .+..+..+.++...+.. ..++++.| |. |+ +
T Consensus 6 k~~~G~~W~~~~~~~~~~i~~v~~iiLARlL~P~dfG-l~a~a~~i~~~~~~~~d---~G~~~ali----q~--~~-~-- 72 (492)
T PRK10459 6 KTISGAKWTAISTVIIIGLQLVQMTVLARIIDNHQFG-LLTMSLVIIAFADTLSD---FGIGASII----QR--KD-I-- 72 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHH---CCHHHHHH----CC--CC-C--
T ss_conf 9881447999999999999999999999975999999-99999999999999997---58469996----68--88-9--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999987143321024763210246888999999999999989999999999999998689
Q 537021.9.peg.4 84 AWRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYF 163 (241)
Q Consensus 84 a~~~~~~~~~~~~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~F~ 163 (241)
.++..++++.........+.++.++.+|++.. .+ ++|| ....+|++.+..++.++..+..+.+|-+.+|.
T Consensus 73 ~~~~~~t~f~l~l~~g~~l~~ll~~~a~~ia~-~y-----~~p~----l~~ll~~l~l~~~i~~~~~~~~a~l~r~l~Fk 142 (492)
T PRK10459 73 SHLQLSTLYWLNVGLGIVVFVLVFLLSPLIAD-FY-----HNPE----LAPLIKTLSLAFVIIPIGQQFRYLLQKDLEFN 142 (492)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----CCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87899599999999999999999999999999-84-----8757----99999999999999998899999999985329
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHC
Q ss_conf 98677788999999999999960465573168999999999999999999999999739877776889998998542
Q 537021.9.peg.4 164 IACMPSMVIHILPIFVLTYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGVELRFQYPRLTCNVKLFL 240 (241)
Q Consensus 164 ~~a~~pi~~Ni~~I~~~~~~~~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k~g~~~~~~~~~~~~~~k~~l 240 (241)
.-+...+..+++.....+.....+ .+.+++++|.+.+..+..+..+...++ .+|+++++ ..+.+|+++
T Consensus 143 ~~a~~~~~~~l~~~~v~i~lA~~g------~g~walv~~~l~~~~~~~il~~~~~~~-~~rp~~~f--~~~~~k~~~ 210 (492)
T PRK10459 143 KLGKIEISSVLAGFTFTVVSAFFW------PLAMAAILGYLVNSSVKTLLFGYFGRK-IYRPGLHF--SLASVSPNL 210 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCC--CHHHHHHHH
T ss_conf 999999999999999999999985------589999999999999999999999830-57987662--788899999
No 18
>PRK10189 hypothetical protein; Provisional
Probab=99.39 E-value=1.1e-08 Score=65.58 Aligned_cols=205 Identities=13% Similarity=0.022 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 99999999999999999995765679999999963499999998655667775589999998510079999999999999
Q 537021.9.peg.4 15 SESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSENAWRLSSEVFSV 94 (241)
Q Consensus 15 ~tl~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~a~~~~~~~~~~ 94 (241)
.....--.|+.=-..+...+|+.. ..|+.++.++-++.+... -+++++--+.-.+..-+++.|++++.....+..
T Consensus 273 ~~~~~~~~~~~~~~~~i~~lG~~a-lAA~~I~~~i~~l~~~~~----~gl~~A~~~~VGq~lGa~~~~~a~~~~~~~~~~ 347 (481)
T PRK10189 273 VESVLFNSGKLLTQMFVAGMGTSV-IAGNFIAFSIAALINLPG----NALGSASTIITGRRLGKGQIAQAERQLRHVFWL 347 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 999999999999999998358189-999999999999999999----999999999999997799899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998714332102476321024688899999999999998999999999999999868998677788999
Q 537021.9.peg.4 95 LLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFIACMPSMVIHI 174 (241)
Q Consensus 95 ~~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~F~~~a~~pi~~Ni 174 (241)
.......+.++...+++++.. ++ .+|+|..+++..++++.....++.+...+..+.|+.-++-..|....++..-
T Consensus 348 ~~~~~~~~~l~~~~~~~~i~~-lf----t~d~ev~~~~~~~l~i~a~~~~~~~~~~v~~g~LrG~Gdt~~~~~i~~i~~w 422 (481)
T PRK10189 348 STLGLTAIAWLTAPFAGFMAS-FY----TQDPQVKHVVKILIWLNALFMPIWAASWVLPAGFKGARDARYAMWVSMLGMW 422 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 999999999999999999998-84----9989999999999999999999999999999997634622999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 9999999999604655731689999999999999999999999997398777768899989
Q 537021.9.peg.4 175 LPIFVLTYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGVELRFQYPRLTCN 235 (241)
Q Consensus 175 ~~I~~~~~~~~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k~g~~~~~~~~~~~~~ 235 (241)
+.- +-.++.++-. ...++.+.=+|..++..+...+.++..++- +|.-|.++..|+
T Consensus 423 ~v~--ipl~y~l~~~--~~~G~~GiW~~~~~~~~v~~vl~~~r~~~g--~W~~k~~~~~~~ 477 (481)
T PRK10189 423 GCR--VVAGYVLGIM--LGWGVVGVWMGMFLDWAVRGVLFYWRMVTG--RWLWKYPRSEPQ 477 (481)
T ss_pred HHH--HHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCCHH
T ss_conf 999--9999999998--479899933669999999999999999479--675568888721
No 19
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.39 E-value=1e-08 Score=65.83 Aligned_cols=152 Identities=19% Similarity=0.320 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 89999999999999999999999999999999576567999999996349999999865566777558999999851007
Q 537021.9.peg.4 2 LMKLVRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGS 81 (241)
Q Consensus 2 ~m~l~r~~~~i~~~tl~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~ 81 (241)
.+++.|++.....++++++++|++=-..++..+|. ++...|..++.+-+++..+... .+.++.+-...++++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~-~~~G~~~~~~~~~~~~~~~~~~---G~~~ai~r~ia~~~~~~~~ 80 (480)
T COG2244 5 KKKLIKGALWLLLGTLISALLGLITIPLLARLLGP-EGFGLYALALAIIGLFSILADF---GLPAAITREIAEYREKGEY 80 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHCCHHH
T ss_conf 88999989999999999999999999999999199-9999999999999999999994---8209999998886010056
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999871433210247632102468889999999999999899999999999999986
Q 537021.9.peg.4 82 ENAWRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGR 161 (241)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~ 161 (241)
...+... .............+.... .....+ . ++ ......++......+....+...++.|.+++
T Consensus 81 ~~~~~~~---~~~~l~~~~~~~~~~~~~-----~~~~~~-~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (480)
T COG2244 81 LLLILLS---VLLLLLLALILLLLLLLI-----AYLLAP-I--DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGR 145 (480)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHH-----HHHHCC-C--CH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999---999999999999999999-----998421-3--20----4899999999999999999999999999998
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899867778899
Q 537021.9.peg.4 162 YFIACMPSMVIH 173 (241)
Q Consensus 162 F~~~a~~pi~~N 173 (241)
+...+.+ .+.+
T Consensus 146 ~~~~~~~-~~~~ 156 (480)
T COG2244 146 FGPLALS-IVSS 156 (480)
T ss_pred HHHHHHH-HHHH
T ss_conf 9999999-9999
No 20
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.38 E-value=1e-08 Score=65.87 Aligned_cols=203 Identities=13% Similarity=0.001 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 99999999999999999999999999999576567999999996349999999865566777558999999851007999
Q 537021.9.peg.4 5 LVRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSENA 84 (241)
Q Consensus 5 l~r~~~~i~~~tl~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~a 84 (241)
+.|-+.=+....++.-..+++-...+++ +|+.+.+ |-..+..+-+++..+.. .+.++.-+..++...++|+|++
T Consensus 12 ll~La~Pi~~~~l~~~l~~~vD~~~vG~-lg~~alA-av~~~~~~~~~~~~~~~----g~~~g~~~lvaq~~Ga~~~~~~ 85 (462)
T PRK00187 12 LLRLAGPLIASQLAHMLMVFTDTLMMGR-LGPEALA-GGGLGAASYSFVSIFCV----GVIAAVGTLVAIRHGAGDIEGA 85 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHH-HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCCHHHH
T ss_conf 9999999999999999999999999875-5899999-99999999999999999----9999999999999779998989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999871433210247632102468889999999999999899999999999999986899
Q 537021.9.peg.4 85 WRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFI 164 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~F~~ 164 (241)
.+..+..+.....+..+..++ ..+.+++... + ..++|..+.+.+++++..+.++++.+....++++++.++-..
T Consensus 86 ~~~~~~~l~~~~~~~~~~~~~-~~~~~~il~~-~----g~~~~~~~~a~~Yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 159 (462)
T PRK00187 86 TRLAQSGLWLAWLLALVAALL-LWNLEPLLLL-F----GQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGP 159 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-H----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 999999999999999999999-9999999998-6----989999999999999999999999999999999986799716
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 86777889999999999999-6046557316899999999999999999999999973
Q 537021.9.peg.4 165 ACMPSMVIHILPIFVLTYAL-CYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKS 221 (241)
Q Consensus 165 ~a~~pi~~Ni~~I~~~~~~~-~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k~ 221 (241)
|....+..|+..|+.-.... .+.+ -+..++.+.++++.+.............++.
T Consensus 160 ~~~~~~~~~v~Ni~Ln~~lI~g~~g--~p~lGv~Gaa~at~~~~~~~~~~l~~~~~~~ 215 (462)
T PRK00187 160 VMVISLAGAVANLALNYALIEGWFG--LPKLGLMGIGLVTALVSNCMALALALYIRRH 215 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999888614456--5532168988999999999999999999990
No 21
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.37 E-value=3.9e-09 Score=68.08 Aligned_cols=198 Identities=13% Similarity=0.194 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 99999999999999999999999999999957656799999999634999999986556677755899999985100799
Q 537021.9.peg.4 4 KLVRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSEN 83 (241)
Q Consensus 4 ~l~r~~~~i~~~tl~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~ 83 (241)
++.|...-+......+.+.+..-...+++..|. .+...|..+.++-+....+ ..+++.++.|..+|..+++++++
T Consensus 214 ~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~-~~~G~Y~~a~~i~~~~~~~----~~~l~~~l~P~~s~~~~~~~~~~ 288 (480)
T COG2244 214 ELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGP-AQVGIYSAAQRLVSLLLIV----ASALNRVLFPALSRAYAEGDRKA 288 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 999999899999999999998579999999578-7932799999999999999----99999999999999876687678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999987143321024763210246888999999999999989999999999999998689
Q 537021.9.peg.4 84 AWRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYF 163 (241)
Q Consensus 84 a~~~~~~~~~~~~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~F~ 163 (241)
.++..++.+.....+.....+...+++|+++..++.+++ .-+...+++..+..++.++.+.....+|+.++..
T Consensus 289 ~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~-------~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~ 361 (480)
T COG2244 289 LKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY-------ASAAPILQLLALAGLFLSLVSLTSSLLQALGKQR 361 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 999999999999999999999999989999999828630-------2169999999999999999999999999836017
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9867778899999999999996046557316899999999999999999999999973
Q 537021.9.peg.4 164 IACMPSMVIHILPIFVLTYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKS 221 (241)
Q Consensus 164 ~~a~~pi~~Ni~~I~~~~~~~~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k~ 221 (241)
.......+.-+..+.......+. .+..+.+.++ ..............++.
T Consensus 362 ~~~~~~~~~~i~~~~l~~~li~~-------~g~~g~~~a~-~~~~~~~~~~~~~~~~~ 411 (480)
T COG2244 362 LLLLISLISALLNLILNLLLIPR-------FGLIGAAIAT-ASVIALALLLFYILRLR 411 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999988-------6699999999-99999999999999999
No 22
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.35 E-value=1.8e-08 Score=64.41 Aligned_cols=194 Identities=12% Similarity=0.013 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 99999999999999999999957656799999999634999999986556677755899999985100799999999999
Q 537021.9.peg.4 13 VASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSENAWRLSSEVF 92 (241)
Q Consensus 13 ~~~tl~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~a~~~~~~~~ 92 (241)
+.....+...++.=...+...+|+... .|+.++.++-++.+...- +++++--+.-.+..-+++.|++++.....+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~lG~~al-AA~~i~~~i~~l~~~~~~----gi~~A~~~~vG~~lGa~~~~~a~~~~~~~~ 319 (462)
T PRK00187 245 IGGTYAVEVGLFTFAALCMGALGSTQL-AAHQIALQAVSVAFMVPV----GLSYAVTMRVGQHYGAGRLLEARRAGRVGI 319 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 999999999999999999985680999-999999999999999999----999999999999876899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999998714332102476-321024688899999999999998999999999999999868998677788
Q 537021.9.peg.4 93 SVLLPILMVMIMVIELVLPLLVRYVMAP-GFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFIACMPSMV 171 (241)
Q Consensus 93 ~~~~~~~~~i~~l~~ifap~~v~~l~ap-Gf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~F~~~a~~pi~ 171 (241)
..-........++.++|.+++.. ++-. +-+.+.|..+++..++++...+.++.++..+..+.+++-+|-..|....++
T Consensus 320 ~~~~~~~~~~~~~~~~f~~~i~~-lFt~~~d~~~~evi~l~~~~l~i~~~~~~~~~~~~v~~g~lrg~G~~~~~~~~~~i 398 (462)
T PRK00187 320 GFGAVAMLLFAGLFWLLPEAIIG-LFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLA 398 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999999999999999999999-86288985239999999999999999999999999999999982743999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999960465573168999999999999999999999
Q 537021.9.peg.4 172 IHILPIFVLTYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYL 216 (241)
Q Consensus 172 ~Ni~~I~~~~~~~~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~ 216 (241)
..-.+ .+-.++.++.. ...++.++=||..+|..++...+..
T Consensus 399 ~~w~v--~vPla~~l~~~--~~~G~~GiW~g~~i~~~~~~i~~~~ 439 (462)
T PRK00187 399 CYWLV--GAPLAWLLAFT--LGWGAVGVWWGLALGLACAAVALTL 439 (462)
T ss_pred HHHHH--HHHHHHHHHHH--HCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999--99999999998--5799233689899999999999999
No 23
>pfam01943 Polysacc_synt Polysaccharide biosynthesis protein. Members of this family are integral membrane proteins. Many members of the family are implicated in production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon. The family includes SpoVB from Bacillus subtilis, which is involved in spore cortex biosynthesis.
Probab=99.34 E-value=1.5e-08 Score=64.86 Aligned_cols=207 Identities=14% Similarity=0.162 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 99999999999999999999999999999576567999999996349999999865566777558999999851007999
Q 537021.9.peg.4 5 LVRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSENA 84 (241)
Q Consensus 5 l~r~~~~i~~~tl~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~a 84 (241)
++|++.....++.++++.||+-..+++..+|..+.. .|..+..+-+++..+... .++++.+...++.+++ ++.
T Consensus 1 llkn~~~~~~~~~~~~~i~~i~~~i~aR~Lg~~~yG-~~~l~~~~~~~~~~~~~l---G~~~a~~r~~~~~~~~---~~~ 73 (272)
T pfam01943 1 LLKNALVLLLAQLISKLLPFVTLPYLARVLGPEGFG-LYSFALAIVGLFVIFADL---GLNAALVREIARYRDD---EKS 73 (272)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCH---HHH
T ss_conf 906889999999999999999999999994999868-999999999999999987---3259999998752308---888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999871433210247632102468889999999999999899999999999999986899
Q 537021.9.peg.4 85 WRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFI 164 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~F~~ 164 (241)
..+. ........+..+.....+.+...... ++ ....+..+.....++........++++.++++..
T Consensus 74 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (272)
T pfam01943 74 SKYI-----SNVLLGKLLLSLIFLLILLIAAFLGL------PD---LAVILLILALAILLLPGVSQFFSWLFQGLEKMKY 139 (272)
T ss_pred HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHCC------CH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999-----99999999999999999999999878------43---7999999999999999999999999999998999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHC
Q ss_conf 8677788999999999999960465573168999999999999999999999999739877776889998998542
Q 537021.9.peg.4 165 ACMPSMVIHILPIFVLTYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGVELRFQYPRLTCNVKLFL 240 (241)
Q Consensus 165 ~a~~pi~~Ni~~I~~~~~~~~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k~g~~~~~~~~~~~~~~k~~l 240 (241)
.+...+..++......+.....++ +.....++...+.++..+..+...+|...+.+.+ ...+..|+++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~k~~l 207 (272)
T pfam01943 140 IAISMIIEKLGSLILVFIAVFLGL------DLLAAVLILLIASLIGGIIALAVLRKKFLPRFVF--FSLKLFKELL 207 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCHHHHHHHH
T ss_conf 999999999999999999999715------6999999999999999999999999985356467--8899999999
No 24
>pfam01554 MatE MatE. The MatE domain
Probab=99.31 E-value=1.9e-09 Score=69.86 Aligned_cols=151 Identities=14% Similarity=0.124 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999995765679999999963499999998655667775589999998510079999999999999999
Q 537021.9.peg.4 18 VNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSENAWRLSSEVFSVLLP 97 (241)
Q Consensus 18 ~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~a~~~~~~~~~~~~~ 97 (241)
+..-+..+=|..+...+|+.. ..|+..+.++-+++.... .+++++.-|...+...++++|++++.....+.+...
T Consensus 7 ~~~~~~~~vd~~~vg~lG~~~-lAa~~i~~~i~~~~~~~~----~g~~~a~~~~vs~~~Ga~~~~~~~~~~~~~~~~~~~ 81 (161)
T pfam01554 7 LLQSLYSLIDTLFVGHLGAVA-LAAVSIANSIASLIFMFL----LGLSTALTTLVGQALGAGNFKRAGVALRQGLILSLL 81 (161)
T ss_pred HHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999749999-999999999999999999----999999999999986887599999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998714332102476321024688899999999999998999999999999999868998677788999999
Q 537021.9.peg.4 98 ILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFIACMPSMVIHILPI 177 (241)
Q Consensus 98 ~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~F~~~a~~pi~~Ni~~I 177 (241)
...++.++.+.+.|++.. ++ +.|+|..+.+.+++++..+..++.++..+..+++++.+|-..|....++.++.-|
T Consensus 82 ~~~~~~~~~~~~~~~i~~-~~----~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~ni 156 (161)
T pfam01554 82 ISLPIALLIILFREPILS-LF----TQDEEVLELASKYLRILALGIPFLSLQFVLSGFLRGAGDTKPPLYINLISLLLNI 156 (161)
T ss_pred HHHHHHHHHHHHHHHHHH-HH----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999999999988999999-97----9789999999999999999999999999999999889965999999999999999
Q ss_pred H
Q ss_conf 9
Q 537021.9.peg.4 178 F 178 (241)
Q Consensus 178 ~ 178 (241)
.
T Consensus 157 ~ 157 (161)
T pfam01554 157 P 157 (161)
T ss_pred H
T ss_conf 9
No 25
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.28 E-value=2.3e-08 Score=63.90 Aligned_cols=193 Identities=15% Similarity=0.119 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 99999999999999999995765679999999963499999998655667775589999998510079999999999999
Q 537021.9.peg.4 15 SESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSENAWRLSSEVFSV 94 (241)
Q Consensus 15 ~tl~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~a~~~~~~~~~~ 94 (241)
..-.+-..++.=-..+...+|+ ....||.++.++-++.+...- +++++--|.-.+..-+++.|++++.......+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~G~-~~lAa~~i~~~i~~~~~~~~~----gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~ 326 (455)
T COG0534 252 LESLSESLGFLLLTLFVARLGT-VALAAYGIALRIASFIFMPPF----GIAQAVTILVGQNLGAGNYKRARRAARLALKL 326 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 9999999999999999997598-999999999999999999999----99999999999987799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998714332102476321024688899999999999998999999999999999868998677788999
Q 537021.9.peg.4 95 LLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFIACMPSMVIHI 174 (241)
Q Consensus 95 ~~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~F~~~a~~pi~~Ni 174 (241)
...+.....++.+++.++++. ++. +|+|..+++.+++++.....++.+...+..+++|+.++=..|....+....
T Consensus 327 ~~~~~~~~~~i~~~~~~~i~~-lf~----~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~g~lrg~g~~~~~~~~~~~~~~ 401 (455)
T COG0534 327 SLLIALLIALLLLLFREPIIS-LFT----TDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYW 401 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 999999999999998999999-978----949999999999999999999999999999997525871998999999999
Q ss_pred HHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999-999999604655731689999999999999999999999997398
Q 537021.9.peg.4 175 LPIF-VLTYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGV 223 (241)
Q Consensus 175 ~~I~-~~~~~~~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k~g~ 223 (241)
..-. ..+...... .+..++=+|...+..+......+..+|...
T Consensus 402 ~~~lp~~~~l~~~~------~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~ 445 (455)
T COG0534 402 GFRLPLAYLLGFFF------LGLAGVWIGFPLSLILRAILLLLRLRRGRW 445 (455)
T ss_pred HHHHHHHHHHHHHH------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998884------174276699999999999999999999988
No 26
>TIGR02900 spore_V_B stage V sporulation protein B; InterPro: IPR014249 This entry represents SpoVB, which is the stage V sporulation protein B of the bacterial endospore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with high sequence similarity to SpoVB exist, such as YkvU from B. subtilis and a number Clostridium proteins, but they are excluded from this entry. .
Probab=99.22 E-value=9e-08 Score=60.64 Aligned_cols=209 Identities=16% Similarity=0.259 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH---C--CCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999----99999999995---7--65679999--999963499999998655667775589999
Q 537021.9.peg.4 5 LVRNFFTLVASESVNRCLG----FVRASLMAAVF---G--VGKITDAF--YTVAYVEFIFVRLAARGDGVIHNSFIPMFS 73 (241)
Q Consensus 5 l~r~~~~i~~~tl~SrilG----f~Re~~~A~~f---G--a~~~~DAf--~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~ 73 (241)
++++-..+++=+.+||..| ++-.+++.... | +++.+.-| +..+.+|-.....+. .-++|+++||-.+
T Consensus 224 ~l~~l~~~S~P~t~srf~~s~l~~~~~llvp~rL~~AGv~~~~A~~~yG~lsGmA~~l~~~P~vI--t~SlST~LvP~iS 301 (493)
T TIGR02900 224 LLFDLLSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTLPAVI--TSSLSTALVPDIS 301 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_conf 99999999864888899999999986889999999877999999998558860799998768999--9999998778899
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99851007999999999999999999999999998714332102476321024688899999999999998999999999
Q 537021.9.peg.4 74 QRREQNGSENAWRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVT 153 (241)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~ 153 (241)
|..+|++-+..++-.+..+.+.++.....++++..++.++.+.++ || .+| +.++.|+++|+.+|.=.++...
T Consensus 302 Ea~~kk~y~~~~~Ri~qa~risll~G~~~~~I~l~~p~~l~~L~y-P~---~~~----~g~fi~~~a~~~pf~Y~~~~~~ 373 (493)
T TIGR02900 302 EAMAKKNYSLVEKRINQALRISLLLGLITTVILLVIPDELGKLFY-PG---RPD----AGNFIRVLAPSFPFLYLSAPLQ 373 (493)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CC---CCC----HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 875535468999999999999999999999999997667764158-99---853----8889999998899999889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 999999868998677788999999999999960465573168999999999999999999999999739877776889
Q 537021.9.peg.4 154 GILFASGRYFIACMPSMVIHILPIFVLTYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGVELRFQYPR 231 (241)
Q Consensus 154 ~~L~a~~~F~~~a~~pi~~Ni~~I~~~~~~~~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k~g~~~~~~~~~ 231 (241)
|+||+-+|=..+-.-.++..++-+..++... .-+.-++||.|.....+.+.-.+.-+..+||. .+.+.+.
T Consensus 374 siL~gLg~~~~~l~NSlI~~iv~~~~lf~Lt-----~~P~i~I~G~a~~~~~~~~l~~~Ln~~~~~K~---~~i~i~~ 443 (493)
T TIGR02900 374 SILQGLGKQKVALRNSLIGAIVKIILLFVLT-----SIPSINIYGYALTIIITSVLVLVLNLAEIKKN---IRITIDL 443 (493)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-----HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHEEECH
T ss_conf 9997315446999999999999999999998-----53046789999999999999999869987655---2215115
No 27
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=98.88 E-value=3.3e-06 Score=52.06 Aligned_cols=186 Identities=10% Similarity=-0.083 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999957656799999999634999999986556677755899999985100799999999999999
Q 537021.9.peg.4 16 ESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSENAWRLSSEVFSVL 95 (241)
Q Consensus 16 tl~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~a~~~~~~~~~~~ 95 (241)
.-..-..++.--..++..+|+.. ..|+.++.++-++...... ++.++.-|.-.+..-++++|+.++.....+.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~G~~~-lAa~~i~~~i~~~~~~~~~----g~a~a~~~lvGq~~GA~~~~~~~~~~~~~~~~~ 318 (439)
T PRK10367 244 RSLLLQLCFGAITVLGARLGSDI-IAVNAVLMTLLTFTAYALD----GFAYAVEAHSGQAYGARDGSQLLDVWRAACRQS 318 (439)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999999998728899-9999999999999999999----999999999999877998999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999987143321024763210246888999999999999989999999999999998689986777889999
Q 537021.9.peg.4 96 LPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFIACMPSMVIHIL 175 (241)
Q Consensus 96 ~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~F~~~a~~pi~~Ni~ 175 (241)
......+.++..+|.++++. ++ .+|||..+++.+.+++.....++.+..-+..|+++...|.....- +......
T Consensus 319 ~~~~~~~~~i~~lf~~~i~~-lF----t~d~~v~~l~~~~l~~~~~~~~~~~~~~~l~Gv~~Ga~~~~~~~~-~~~~~~~ 392 (439)
T PRK10367 319 GIVALLFSVVYLLAGEHIIA-LL----TSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRN-SMAVAAA 392 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHH
T ss_conf 99999999999999999987-72----995999999999999999999999999999899993214177999-9999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999960465573168999999999999999999999999
Q 537021.9.peg.4 176 PIFVLTYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAK 219 (241)
Q Consensus 176 ~I~~~~~~~~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~ 219 (241)
.....+...+ ..+.+++=|+..+....+.+.....-|
T Consensus 393 ~~~~~l~~~~-------~lG~~GiW~a~~i~~~~r~i~l~~~~r 429 (439)
T PRK10367 393 GFALTLLTLP-------WLGNHGLWLALTVFLALRGLSLAAIWR 429 (439)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999-------875889999999999999999999999
No 28
>TIGR00797 matE MATE efflux family protein; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transporter activity, 0015297 antiporter activity, 0006855 multidrug transport, 0016020 membrane.
Probab=98.34 E-value=0.00014 Score=43.14 Aligned_cols=144 Identities=15% Similarity=0.179 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999995765679999999963499999998655667775589999998510079999999999999999
Q 537021.9.peg.4 18 VNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSENAWRLSSEVFSVLLP 97 (241)
Q Consensus 18 ~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~a~~~~~~~~~~~~~ 97 (241)
++=.+.+.=-..++..+|-+...+++.++.++.++.+-..-+. |.=.++.+ .++.-++|.|++++.......+-..
T Consensus 236 ~~~~~~~~~~~~~~~~~G~~~~lA~~~~~~~~~~~~~m~~~G~-~~A~~~~v---G~~lGa~~~~~a~~~~~~~~~~~~~ 311 (412)
T TIGR00797 236 ILESLSFALVALLVARLGGSIALAAHQVALNVESLLFMPAFGL-GIAVSILV---GQALGAGDPKRAKEVARVALKLSLL 311 (412)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999873167324677899999999999999899-99999999---9985146878999999999999999
Q ss_pred HHHHHHHHHHHHHHH---HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999987143---3210247632102468889999999999999899999999999999986899867778
Q 537021.9.peg.4 98 ILMVMIMVIELVLPL---LVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFIACMPSM 170 (241)
Q Consensus 98 ~~~~i~~l~~ifap~---~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~F~~~a~~pi 170 (241)
...++.++...+.+. +.+ ++ .+|+|-.+++.+++.+..++.+..++..+..|++...++...+....+
T Consensus 312 ~~~~~~~~~~~~~~~g~Pi~~-lF----t~d~~v~~~~~~~l~~~~~~~~~~~~~~v~~G~lrG~G~~~~~~~~~~ 382 (412)
T TIGR00797 312 LGLVLAIILILFREVGLPIAR-LF----TNDPEVLELAASYLIFVALFQFSDGIQFVLSGVLRGAGDTKVILIITF 382 (412)
T ss_pred HHHHHHHHHHHHCCCCCCHHH-HH----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999983023642455-50----795769999999999999999877899999999983272579999999
No 29
>KOG1347 consensus
Probab=94.60 E-value=0.089 Score=27.72 Aligned_cols=191 Identities=13% Similarity=0.012 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 99999999999999999957656799999999634999-99998655667775589999998510079999999999999
Q 537021.9.peg.4 16 ESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIF-VRLAARGDGVIHNSFIPMFSQRREQNGSENAWRLSSEVFSV 94 (241)
Q Consensus 16 tl~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l-~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~a~~~~~~~~~~ 94 (241)
+.+..-.=-+.++.++-+.|.- +.++...+....|.. +++.. .+.++.-|+..|....+..+.......+-. .
T Consensus 40 ~~~~~~~~~~is~~f~GhlG~l-eLaa~sla~s~~n~~~~s~~~----gl~~aletlcgQa~ga~~~~~lg~~lqrs~-~ 113 (473)
T KOG1347 40 TFLAQPLLSLVSTAFAGHLGNL-ELASVSLANSFANITGVSILL----GLQLALDTLCGQAFGAKKFTALGVYLQRSG-I 113 (473)
T ss_pred HHHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHCCCCCCCHHH----CCHHHHCCCCHHHCCCCHHHHHHHHHHHHH-H
T ss_conf 9999887778888640166740-233466665322443402342----410313021045418621223388999999-9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998714332102476321024688899999999999998999999999999999868998677788999
Q 537021.9.peg.4 95 LLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFIACMPSMVIHI 174 (241)
Q Consensus 95 ~~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~F~~~a~~pi~~Ni 174 (241)
......+...+.+++++++.. .+ ..+++.-..+-.+.+.+.|.++-+...--....||+.+++.+..+.....+.
T Consensus 114 ~l~~~~~~~~~l~~~~~~il~-~l----gq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~~~~~~ 188 (473)
T KOG1347 114 VLLVQGLPISLLILNSEPILL-LL----GQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIGLVALV 188 (473)
T ss_pred HHHHHHHHHHHHHHCCHHHHH-HH----CCCHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 998765456869970198998-72----7984666774130135503444113333899997653885228899888887
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999960465573168999999999999999999999999739
Q 537021.9.peg.4 175 LPIFVLTYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSG 222 (241)
Q Consensus 175 ~~I~~~~~~~~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k~g 222 (241)
.-+.. .+.+... ...++.+.+.+.....-++...+..+.+-.+
T Consensus 189 lhi~~---~~llv~~--~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~ 231 (473)
T KOG1347 189 LHILL---TWLLVSK--LGLGIKGAALALVASYWLNVRILLLYAVLSG 231 (473)
T ss_pred HCCCC---CEEEEEE--CCCCCCCCHHHHHHHHHHHHHHHHHEEEECC
T ss_conf 40210---0136884--3558876124543368999997633045326
No 30
>pfam04506 Rft-1 Rft protein.
Probab=90.26 E-value=1 Score=21.88 Aligned_cols=127 Identities=12% Similarity=0.065 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999871433210247632102468889999999999999899999999999999986
Q 537021.9.peg.4 82 ENAWRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGR 161 (241)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~ 161 (241)
+++.+....++.....+..++.+++--.+|.+...+..+-.++ ++ +...++.-..+++|.+++|+..+..++-..
T Consensus 324 ~~a~~~L~~llk~~~~igL~i~~FGp~ys~~lL~ll~G~~ws~-~~----~~~lL~~Yc~YIp~LAiNGItEAF~~avat 398 (533)
T pfam04506 324 KDAVDVLSNLLHVVSYIGLVAITFGIPYSPVVLLLYGGSKWSE-NG----GASLLSWYCGYIPFLAINGITEGFAMASAT 398 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC-CC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999999999817100899999967765657-87----789999999999999970099999999579
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---89986777889999999999999604655731689999999999999999999999997
Q 537021.9.peg.4 162 ---YFIACMPSMVIHILPIFVLTYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKK 220 (241)
Q Consensus 162 ---F~~~a~~pi~~Ni~~I~~~~~~~~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k 220 (241)
=...+.-=.++.++ ++...+.+... .|..++.++..+...+...+-+...+|
T Consensus 399 ~~el~~~n~~M~~fS~~---fl~~sy~l~~~----lG~~GlI~AN~iNM~lRI~ys~~fI~~ 453 (533)
T pfam04506 399 SRQIFKHGKFMFAFSVI---FLIISYVLCVY----LGSAGFILANIINMSLRILYNWRFIRH 453 (533)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999---99999999987----072289999998899999999999999
No 31
>pfam10997 DUF2837 Protein of unknown function (DUF2837). This bacterial family of proteins has no known function.
Probab=87.41 E-value=1.7 Score=20.75 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------------HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999868998677788999999999999960465573------------1689999999999999999999
Q 537021.9.peg.4 147 SLASLVTGILFASGRYFIACMPSMVIHILPIFVLTYALCYGSNMHK------------AEMIYLLCWGVFLAHAVYFWIL 214 (241)
Q Consensus 147 ~l~~i~~~~L~a~~~F~~~a~~pi~~Ni~~I~~~~~~~~~~~~~~~------------~~~i~~la~g~~lg~~~q~l~~ 214 (241)
.+++++.|.|+-+-|-....++++++.+.+|...++..|...-..+ ...+..+..+-++|.++--++.
T Consensus 163 VLsaLYAg~L~Pe~R~Ta~~lSgiING~ATILl~~~vDP~~s~iTD~v~~g~~~~~d~~~~v~~l~~srllGTllAQ~lf 242 (254)
T pfam10997 163 VLSALYAGALFPEYRTTASTLSGIINGFATILLTLFVDPKLSVITDDVLRGKRSEEDVKRAVLYMVLSRLLGTLLAQALF 242 (254)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998648178999999999887699999999948447886899881778889999999999999999999999999
Q ss_pred HHHHH
Q ss_conf 99999
Q 537021.9.peg.4 215 YLSAK 219 (241)
Q Consensus 215 ~~~l~ 219 (241)
.|..+
T Consensus 243 iPaA~ 247 (254)
T pfam10997 243 IPAAY 247 (254)
T ss_pred HHHHH
T ss_conf 99999
No 32
>KOG2864 consensus
Probab=76.96 E-value=4.4 Score=18.42 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999899999999999999
Q 537021.9.peg.4 134 QLSRVVMPSIFFISLASLVTGILFA 158 (241)
Q Consensus 134 ~l~ri~~p~i~f~~l~~i~~~~L~a 158 (241)
.++|+-..++++..++++..+..+|
T Consensus 366 ~lL~~YclYI~~lAiNGitEaF~~A 390 (530)
T KOG2864 366 LLLSWYCLYIPFLAINGITEAFAFA 390 (530)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 9999999999999960388999999
No 33
>pfam10951 DUF2776 Protein of unknown function (DUF2776). This bacterial family of proteins has no known function.
Probab=76.44 E-value=2.2 Score=20.05 Aligned_cols=191 Identities=13% Similarity=0.113 Sum_probs=91.8
Q ss_pred HCCCHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57656799999999634--9999999865-56677755899999985100799999999999999999999999999871
Q 537021.9.peg.4 34 FGVGKITDAFYTVAYVE--FIFVRLAARG-DGVIHNSFIPMFSQRREQNGSENAWRLSSEVFSVLLPILMVMIMVIELVL 110 (241)
Q Consensus 34 fGa~~~~DAf~~A~~iP--~~l~~l~~~~-~Gal~~~fIP~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~l~~ifa 110 (241)
+..+...|.|.....+- .++.--++.. ..+-.-.+||.=++..+ ++.....|.+..-..+..+-.+.++++++++
T Consensus 95 ~~~~~~~~~FVAGhVi~GVg~ItaCVaT~AtsStrFtlIp~Ns~~~~--~~~P~~afs~~~g~~Liav~~~~tl~~~IWa 172 (347)
T pfam10951 95 LNNSTTASAFVAGHVIFGVGLITACVATVATSSTRFTLIPANSKGTD--NGVPKGAFSSGQGLILIAVAILITLIAWIWA 172 (347)
T ss_pred HCCCCCHHHHCCCCEEECHHHHHHHHHHHHHCCCCEEEEECCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 46999778870465465527999999877640560798546777889--9998100214777899999999999999999
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 433210247632102468889999-9999999998999-9999999999---9986899867778899999999999996
Q 537021.9.peg.4 111 PLLVRYVMAPGFPYQSDEYFLTVQ-LSRVVMPSIFFIS-LASLVTGILF---ASGRYFIACMPSMVIHILPIFVLTYALC 185 (241)
Q Consensus 111 p~~v~~l~apGf~~~~~~~~la~~-l~ri~~p~i~f~~-l~~i~~~~L~---a~~~F~~~a~~pi~~Ni~~I~~~~~~~~ 185 (241)
-.+.+. . ++.+.+-.+-+ +.-+-..+--+++ .+.+...+-| .+||-.+|.+--++-.+..|-+++....
T Consensus 173 f~LL~~----s--~~~p~y~VAGHVm~Gla~ICtsLIaLVATI~rQiRN~ys~~Er~~W~~lVl~mGsis~i~Gi~Vl~~ 246 (347)
T pfam10951 173 FTLLAH----S--DEHPAYFVAGHVMAGLACICTSLIALVATIARQIRNTYSEKERWLWPALVLLMGSISLLWGIFVLLS 246 (347)
T ss_pred HHHHHC----C--CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEEC
T ss_conf 999733----6--7785401165899849999999999999999998854048888788999999816999854514753
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 04655731689999999999999999999999997398777768899
Q 537021.9.peg.4 186 YGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGVELRFQYPRL 232 (241)
Q Consensus 186 ~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k~g~~~~~~~~~~ 232 (241)
-.++.....+....+.|.+.=.+..=.+++-..||..++..-+.|.+
T Consensus 247 ~~~~~~~a~GyImIgLGlvCYSIsSKViLLa~iWR~~fkLANRIPlI 293 (347)
T pfam10951 247 DSNSANLAPGYIMIGLGLVCYSISSKVILLAKIWRREFKLANRIPLI 293 (347)
T ss_pred CCCCCCCCCCEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 79745678643786325032016889999999999987662368827
No 34
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family; InterPro: IPR006307 This is one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, the flagellar biosynthetic protein FlhB (IPR006136 from INTERPRO). This model may not identify all type III secretion system FlhB homologs. ; GO: 0006810 transport, 0016021 integral to membrane.
Probab=73.31 E-value=5.5 Score=17.89 Aligned_cols=40 Identities=10% Similarity=-0.020 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCCCCCCCHHHH
Q ss_conf 999999999999999999999973------9877776889998998
Q 537021.9.peg.4 198 LLCWGVFLAHAVYFWILYLSAKKS------GVELRFQYPRLTCNVK 237 (241)
Q Consensus 198 ~la~g~~lg~~~q~l~~~~~l~k~------g~~~~~~~~~~~~~~k 237 (241)
....+.++.+++=+.+|.+.-.|. ..+-..|..--||.+|
T Consensus 189 ~~l~~~l~~~~~D~~~q~~~~~KdlkMsK~EVKrEyKe~EGdPeiK 234 (346)
T TIGR01404 189 VILGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIK 234 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHH
T ss_conf 9999999999999999999998431899778864310278684134
No 35
>TIGR02140 permease_CysW sulfate ABC transporter, permease protein CysW; InterPro: IPR011866 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CysW, one of two homologous, tandem permeases in the sulphate ABC transporter system; the other is CysT (IPR011865 from INTERPRO). The sulphate transporter has been described in Escherichia coli as transporting sulphate, thiosulphate, selenate, and selenite. Sulphate transporters may also transport molybdate ion if a specific molybdate transporter is not present.; GO: 0015116 sulfate transmembrane transporter activity, 0008272 sulfate transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=54.01 E-value=13 Score=15.79 Aligned_cols=118 Identities=11% Similarity=0.244 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q ss_conf 999999999871433210247632102468889999999-9999998999999999999999868----99867778899
Q 537021.9.peg.4 99 LMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSR-VVMPSIFFISLASLVTGILFASGRY----FIACMPSMVIH 173 (241)
Q Consensus 99 ~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~r-i~~p~i~f~~l~~i~~~~L~a~~~F----~~~a~~pi~~N 173 (241)
+=+..++-.-|.+=+-.+ + ... .|||++. |+++|- +.+..++...+-+++.++.=+|+|| ..-++-.+.+.
T Consensus 19 lPl~~iF~~AF~~G~~~f-~-~~i-~~Pd~~s-A~~LTlLv~~I~VPlN~~FGv~~Aw~~~rf~FpGk~lL~t~iDlPFS 94 (275)
T TIGR02140 19 LPLILIFYEAFEKGVGVF-F-AAI-SDPDALS-AIKLTLLVALIVVPLNTVFGVAAAWVLTRFQFPGKRLLLTIIDLPFS 94 (275)
T ss_pred HHHHHHHHHHHHHHHHHH-H-HHH-CCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
T ss_conf 999999999997569999-9-973-5955899-99898866765330788999999999874316745767777760443
Q ss_pred HHHHHH-HHHHHHHC-CCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 999999-99999604-65573---1689999999999999999999999997398777768899
Q 537021.9.peg.4 174 ILPIFV-LTYALCYG-SNMHK---AEMIYLLCWGVFLAHAVYFWILYLSAKKSGVELRFQYPRL 232 (241)
Q Consensus 174 i~~I~~-~~~~~~~~-~~~~~---~~~i~~la~g~~lg~~~q~l~~~~~l~k~g~~~~~~~~~~ 232 (241)
+..++. +.+...++ ..|+. ..++-.-+ .+.+.+.+.++|.-|.+|.+
T Consensus 95 VSPVvAGL~~~LLyGrqGW~~PliedGvrfsG------------~lG~~l~~~d~~IiF~~PGi 146 (275)
T TIGR02140 95 VSPVVAGLIFVLLYGRQGWSQPLIEDGVRFSG------------WLGPWLEDRDIKIIFSLPGI 146 (275)
T ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHCCCCEEC------------CCHHHHHHCCCEEEECCHHH
T ss_conf 22489999999984310013622343420004------------20278886288588714134
No 36
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme; InterPro: IPR012838 Members of this family are iron-sulphur proteins with a radical-SAM domain. A single glycine residue in 2.3.1.54 from EC, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of a proton from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue .; GO: 0043365 [formate-C-acetyltransferase]-activating enzyme activity.
Probab=39.51 E-value=16 Score=15.29 Aligned_cols=35 Identities=17% Similarity=0.415 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999998714332102476321024688899999
Q 537021.9.peg.4 101 VMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQL 135 (241)
Q Consensus 101 ~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l 135 (241)
.+-.+...==|.|+++++-||.++++|..+.-..+
T Consensus 155 Fa~~L~~~~kP~WiRYVlVPGyTD~~eDi~~l~~f 189 (243)
T TIGR02493 155 FAKYLAKRNKPIWIRYVLVPGYTDSEEDIEALAEF 189 (243)
T ss_pred HHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 99999965898899998658877998999999999
No 37
>TIGR02615 spoVE stage V sporulation protein E; InterPro: IPR013438 Like FtsW, SpoVE proteins are encoded in a peptidoglycan operon context, but found only in endospore-forming bacteria such as Bacillus, Geobacillus and Oceanobacillus. In these genera they are part of a larger set of paralogs (not just the pair FtsW and RodA) and are required specifically for sporulation, not for viability..
Probab=36.78 E-value=25 Score=14.25 Aligned_cols=167 Identities=16% Similarity=0.193 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--HHHHHH
Q ss_conf 79999999963499999998655667775589999998510079999999999999999999999999--98--714332
Q 537021.9.peg.4 39 ITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSENAWRLSSEVFSVLLPILMVMIMVI--EL--VLPLLV 114 (241)
Q Consensus 39 ~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~l~--~i--fap~~v 114 (241)
.-|+|+-.=|- . +.|. -|.+.-.|+ +..+|.+ =+|++..++.+....+.++.+.+ .. =|..|+
T Consensus 31 ~~D~~YFlKRQ--~---l~A~-~G~~aM~f~-mnvdY~~------~k~~~k~ll~I~~vLL~lVlipGvG~~r~ga~~WI 97 (356)
T TIGR02615 31 FNDSFYFLKRQ--L---LFAI-LGVFAMFFT-MNVDYYT------WKRWAKMLLVICFVLLLLVLIPGVGMERNGARRWI 97 (356)
T ss_pred CCCHHHHHHHH--H---HHHH-HHHHHHHHH-HHCCHHH------HHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEE
T ss_conf 37518999999--9---9999-999999999-8516367------89997799999999999997357536767831102
Q ss_pred HCCCCCCCCCHHHH---HHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10247632102468---889--------------9999999999998999999999999999868998677788999999
Q 537021.9.peg.4 115 RYVMAPGFPYQSDE---YFL--------------TVQLSRVVMPSIFFISLASLVTGILFASGRYFIACMPSMVIHILPI 177 (241)
Q Consensus 115 ~~l~apGf~~~~~~---~~l--------------a~~l~ri~~p~i~f~~l~~i~~~~L~a~~~F~~~a~~pi~~Ni~~I 177 (241)
. -..|+-+|.+ +.+ ...+.|=..|+ .++...+-+.-.+++++. .+.++.-.+.|
T Consensus 98 g---~G~fs~QPSE~~K~~liiyLAk~l~~~~~~i~sl~~G~iP~---L~~~g~~fglim~qp~ls---ta~v~~~~~~v 168 (356)
T TIGR02615 98 G---VGAFSIQPSEIAKYALIIYLAKYLSEKQEYITSLRKGVIPV---LLLAGVAFGLIMLQPNLS---TATVIVLVCVV 168 (356)
T ss_pred E---CCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHH---HHHHHHHHHHHHHCCCCC---HHHHHHHHHHH
T ss_conf 2---15743274689999999999988641463000211350234---899999998987066766---13778889999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 9999999604655731689999999999999999999999997398777768899989
Q 537021.9.peg.4 178 FVLTYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGVELRFQYPRLTCN 235 (241)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k~g~~~~~~~~~~~~~ 235 (241)
.....+..+. ....+..-.+.+++.-.+.-.....|++. ..|..||.||.
T Consensus 169 mlFVAGA~ls-------h~~~l~~~~~~~gva~~~~~pfr~~reR~-~~FlNPW~Dp~ 218 (356)
T TIGR02615 169 MLFVAGARLS-------HLIILVGIGISGGVALILSAPFRIKRERI-LSFLNPWEDPL 218 (356)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHCCCCCCCCEE-EEECCCCCCCC
T ss_conf 9998758999-------99999999999988888632300012002-10038672636
No 38
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=32.41 E-value=30 Score=13.84 Aligned_cols=24 Identities=8% Similarity=-0.007 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999999999973
Q 537021.9.peg.4 198 LLCWGVFLAHAVYFWILYLSAKKS 221 (241)
Q Consensus 198 ~la~g~~lg~~~q~l~~~~~l~k~ 221 (241)
+.+.|.++-++.-+..|...-.|.
T Consensus 190 g~~~~ylv~sv~Dy~fqr~~~~K~ 213 (349)
T COG4792 190 GVAVGYLVFSVADYAFQRYQILKE 213 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999
No 39
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=31.42 E-value=31 Score=13.75 Aligned_cols=49 Identities=8% Similarity=0.023 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf 86777889999999999999604655731-68999999999999999999
Q 537021.9.peg.4 165 ACMPSMVIHILPIFVLTYALCYGSNMHKA-EMIYLLCWGVFLAHAVYFWI 213 (241)
Q Consensus 165 ~a~~pi~~Ni~~I~~~~~~~~~~~~~~~~-~~i~~la~g~~lg~~~q~l~ 213 (241)
|++-+.++.+.+|+..-...+++...+.. ..-.=.++|..+.++.....
T Consensus 318 ~~~fqslNpl~IiilaPl~a~lw~~lg~~~~~p~KfaiG~~l~gl~F~vl 367 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDTLPMPHKFAIGMVLCSGAFLVL 367 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 89998872799999899999999981777883699999999999999999
No 40
>KOG3236 consensus
Probab=29.52 E-value=30 Score=13.87 Aligned_cols=32 Identities=16% Similarity=0.066 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q ss_conf 999999999999986899-86777889999999
Q 537021.9.peg.4 147 SLASLVTGILFASGRYFI-ACMPSMVIHILPIF 178 (241)
Q Consensus 147 ~l~~i~~~~L~a~~~F~~-~a~~pi~~Ni~~I~ 178 (241)
.+++.-.-+-....|+.. |+++++..-.+.+.
T Consensus 148 ~la~l~w~itr~d~~~~~~p~Vsli~~~aV~~a 180 (225)
T KOG3236 148 SLAALGWMITRTDLKFLFRPAVSLILACAVFKA 180 (225)
T ss_pred HHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 898888886026565354311379999999999
No 41
>TIGR00353 nrfE cytochrome c-type biogenesis protein CcmF; InterPro: IPR003568 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK , CcmF ,, NrfE and CcbS . These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus. The ccl locus contains two genes, ccl1 and ccl2, each of which possesses typical signal sequences to direct them to the periplasm . Ccl1 is similar to proteins encoded by chloroplast and mitochondrial genes, suggesting analogous functions in these organelles. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes . The CycK and CycL proteins of Bradyrhizobium japonicum share up to 53% amino acid sequence identity with Rhodobacter capsulatus proteins Cc11 and Cc12 proteins, respectively. CycK and CycL proteins, which are encoded by the cycHJKL-cluster, may form part of a cytochrome c-haem lyase complex whose active site faces the periplasm . ; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane.
Probab=27.78 E-value=31 Score=13.76 Aligned_cols=198 Identities=14% Similarity=0.136 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHH--HHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HH
Q ss_conf 9999999999999999--9999-999999576567999999996349999999865566777558999999851007-99
Q 537021.9.peg.4 8 NFFTLVASESVNRCLG--FVRA-SLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGS-EN 83 (241)
Q Consensus 8 ~~~~i~~~tl~SrilG--f~Re-~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~-~~ 83 (241)
.+..+++.++-=-++| .+|- ++.+-+==|++-+=++..=. ++. ++. .+++ -.|.-...++.+ ..
T Consensus 223 Wt~Llai~af~lslLGTf~VRSG~LvSVHAFA~D~~Rg~~ll~----~~~-~~~--~~sl-----~Lya~rag~~~~s~v 290 (590)
T TIGR00353 223 WTLLLAILAFSLSLLGTFIVRSGILVSVHAFALDNTRGLVLLA----LFV-LVI--GGSL-----ALYALRAGSSVRSAV 290 (590)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHH----HHH-HHH--HHHH-----HHHHHHHCCCCCCHH
T ss_conf 9999999999999887899871166645543057234899999----999-999--9999-----999875046565125
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCC-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999987143321024---7632-1-02468889999999999999899999999999999
Q 537021.9.peg.4 84 AWRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVM---APGF-P-YQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFA 158 (241)
Q Consensus 84 a~~~~~~~~~~~~~~~~~i~~l~~ifap~~v~~l~---apGf-~-~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a 158 (241)
-.+..|+-..++..-.++.++++.++-.-+.++++ .=|= + .+| -++ .-++.++-|..++.++. -.+-.-
T Consensus 291 ~~~~~Sre~~~L~~n~Ll~~a~~~vllGTlyPl~~~~lg~GsiSvG~P-yFn--~~f~~~~~~~~lLl~i~---l~vr~g 364 (590)
T TIGR00353 291 NFSLLSRESLILLNNILLVAALLVVLLGTLYPLVHKQLGLGSISVGAP-YFN--SMFLPIMTPFALLLGIG---LLVRWG 364 (590)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC-CHH--HHHHHHHHHHHHHHHHH---HHEECC
T ss_conf 665402578899999999999999999888899998828843530787-234--34899999999987777---320126
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 98689986777889999999999999604655731689999999999999999999999997398
Q 537021.9.peg.4 159 SGRYFIACMPSMVIHILPIFVLTYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGV 223 (241)
Q Consensus 159 ~~~F~~~a~~pi~~Ni~~I~~~~~~~~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~k~g~ 223 (241)
++|+..---.-++.=.++++.-+..++.-.+.-....+.+.+.++.+....-+..+....+|+.+
T Consensus 365 ~Dr~~~IR~~~~~~~~~~l~~gl~lp~~l~~~~~~~~v~g~~~a~~~~~LAi~~l~~~~~~~e~f 429 (590)
T TIGR00353 365 RDRTLLIRCGLVIIVLSTLVAGLLLPYLLRNKVVVSAVLGLAMAVVIAVLAIYELAVRLSRNESF 429 (590)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
T ss_conf 76134666789999999999999989998501678899999999999999999999988624633
No 42
>TIGR01434 glu_cys_ligase glutamate--cysteine ligase; InterPro: IPR006334 These sequences represent glutamate--cysteine ligase, also known as gamma-glutamylcysteine synthetase, an enzyme in the biosynthesis of glutathione (GSH). GSH is one of several low molecular weight cysteine derivatives that can serve to protect against oxidative damage and participate in biosynthetic or detoxification reactions.; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process.
Probab=25.49 E-value=40 Score=13.19 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999999999957656799999999634
Q 537021.9.peg.4 20 RCLGFVRASLMAAVFGVGKITDAFYTVAYVE 50 (241)
Q Consensus 20 rilGf~Re~~~A~~fGa~~~~DAf~~A~~iP 50 (241)
..|||+||+ |-|-++-..|-+...+.+|
T Consensus 75 ~~L~fl~dl---HrftasKl~~ErmWp~S~P 102 (518)
T TIGR01434 75 DLLSFLEDL---HRFTASKLDDERMWPLSMP 102 (518)
T ss_pred HHHHHHHHH---HHHHHHHCCCCCCCCCCCC
T ss_conf 899999999---9998654178501656686
No 43
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase; InterPro: IPR012775 Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukaryotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.; GO: 0005506 iron ion binding, 0016706 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen 2-oxoglutarate as one donor and incorporation of one atom each of oxygen into both donors, 0045329 carnitine biosynthetic process.
Probab=24.32 E-value=12 Score=16.11 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999999999999999576567999999996
Q 537021.9.peg.4 17 SVNRCLGFVRASLMAAVFGVGKITDAFYTVAY 48 (241)
Q Consensus 17 l~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~ 48 (241)
-+++-+||+||.-.+..|-....+||=+.|++
T Consensus 157 k~~~r~G~Ir~TnyG~~FeVr~k~danN~AYT 188 (384)
T TIGR02409 157 KVGDRIGFIRETNYGLLFEVRSKVDANNLAYT 188 (384)
T ss_pred HHHHHHCHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf 24545221211035205887222285414676
No 44
>pfam03390 2HCT 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.
Probab=20.96 E-value=50 Score=12.64 Aligned_cols=94 Identities=17% Similarity=0.269 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 99999999999999999999999999999576567999999996349999999865566777558999999851007999
Q 537021.9.peg.4 5 LVRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSENA 84 (241)
Q Consensus 5 l~r~~~~i~~~tl~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~a 84 (241)
|.|+..-.-.-.+.+-+.++.--.+.+..+|-+..-.-|+++ +| +.++| ...--+|.=.-+.+.- ..++
T Consensus 116 Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~~i~~i~--lP-----IMgGG---~GaGavPLS~iYs~~~-g~~~ 184 (414)
T pfam03390 116 LIKGFLRYIPPILAGVIAAALVGGLVGLLFGYGFKHSVFYIV--LP-----IMGGG---VGAGAVPLSEIYSEIL-GMSQ 184 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHE--EH-----HCCCC---CCCCHHHHHHHHHHHH-CCCH
T ss_conf 999998778999999999999999999993888888777631--03-----21787---5534402899999883-9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999987
Q 537021.9.peg.4 85 WRLSSEVFSVLLPILMVMIMVIELV 109 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~~i~~l~~if 109 (241)
.++.+.+.-.+.+.-....+..-+.
T Consensus 185 ~~~~s~~ipal~lgNi~AIi~aglL 209 (414)
T pfam03390 185 EQYFSQLIPALTIGNILAIILAGLL 209 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999989999999999
Done!