Query 537021.9.peg.476_1
Match_columns 241
No_of_seqs 114 out of 1668
Neff 7.3
Searched_HMMs 23785
Date Tue May 24 23:42:56 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_476.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 99.4 7.7E-11 3.2E-15 76.3 17.9 195 12-216 246-441 (460)
2 3mkt_A Multi antimicrobial ext 99.2 1.3E-09 5.6E-14 69.5 15.1 202 5-219 14-215 (460)
3 2knc_A Integrin alpha-IIB; tra 27.7 22 0.00093 13.4 3.2 35 195-230 11-45 (54)
4 1oqw_A Fimbrial protein; type 21.9 29 0.0012 12.8 3.9 26 60-85 12-37 (144)
5 1va6_A Glutamate--cysteine lig 9.6 46 0.0019 11.6 -0.3 25 21-45 184-209 (518)
6 2hi2_A Fimbrial protein; type 8.9 68 0.0028 10.7 3.1 26 60-85 12-37 (158)
7 3nzt_A Glutamate--cysteine lig 7.3 68 0.0029 10.7 -0.2 21 22-42 191-212 (525)
8 2k1a_A Integrin alpha-IIB; sin 5.4 1.1E+02 0.0046 9.6 4.9 30 196-226 10-39 (42)
9 3ewt_E Tumor necrosis factor r 5.1 1.2E+02 0.005 9.4 1.3 10 18-27 13-22 (26)
10 2wgm_A ATP synthase subunit C, 4.8 1.3E+02 0.0055 9.2 6.7 43 73-116 40-87 (89)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.39 E-value=7.7e-11 Score=76.29 Aligned_cols=195 Identities=10% Similarity=-0.037 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 99999999999999999999995765679999999963499999998655667775589999998510079999999999
Q 537021.9.peg.4 12 LVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSENAWRLSSEV 91 (241)
Q Consensus 12 i~~~tl~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~a~~~~~~~ 91 (241)
........-..++.-...++..+|+ .+.++|.++.++-.+..... .+++++..|...+...+++.+++++.....
T Consensus 246 p~~~~~~~~~~~~~~~~~~~~~~g~-~~~aa~~i~~~i~~~~~~~~----~~l~~a~~~~vg~~~G~~~~~~~~~~~~~~ 320 (460)
T 3mkt_A 246 PVAAALFFEVTLFAVVALLVAPLGS-TVVAAHQVALNFSSLVFMFP----MSIGAAVSIRVGHKLGEQDTKGAAIAANVG 320 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTSS-HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHSSCCCTTTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 2788999999999999999872687-12259899999999999999----999999999999987277689999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998714332102476321024688899999999999998999999999999999868998677788
Q 537021.9.peg.4 92 FSVLLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFIACMPSMV 171 (241)
Q Consensus 92 ~~~~~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~F~~~a~~pi~ 171 (241)
+.+......++..+.+++.+++.. ++ .+|++..+++..++++..+..++.+++.+..+++|+-+|-..+....++
T Consensus 321 ~~~~~~~~~~~~~l~~~~~~~i~~-~f----~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~ 395 (460)
T 3mkt_A 321 LMTGLATACITALLTVLFREQIAL-LY----TENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFI 395 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-CS----SCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 984489999999999999999986-26----8989999999999999999999999999999999986748999999999
Q ss_pred HHH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999-999999999960465573168999999999999999999999
Q 537021.9.peg.4 172 IHI-LPIFVLTYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYL 216 (241)
Q Consensus 172 ~Ni-~~I~~~~~~~~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~ 216 (241)
... +.+...++............++.+.-||..++..++.++...
T Consensus 396 ~~~~i~ip~~~~l~~~~~~~~~~~G~~Giw~~~~~~~~~~~~~~~~ 441 (460)
T 3mkt_A 396 SYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQ 441 (460)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999852352446999999999999999999999
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.19 E-value=1.3e-09 Score=69.49 Aligned_cols=202 Identities=10% Similarity=0.015 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 99999999999999999999999999999576567999999996349999999865566777558999999851007999
Q 537021.9.peg.4 5 LVRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSENA 84 (241)
Q Consensus 5 l~r~~~~i~~~tl~SrilGf~Re~~~A~~fGa~~~~DAf~~A~~iP~~l~~l~~~~~Gal~~~fIP~~~~~~~~~~~~~a 84 (241)
+.|-+.-+.+..+..-+.|++-...+++ +|+.. ..|...+..+-++...+. ..+..+.-...+|...++|+|++
T Consensus 14 l~~la~P~~~~~l~~~~~~~vD~~~vg~-lg~~~-laav~~~~~i~~~~~~~~----~gl~~g~~~lvaq~~G~~~~~~~ 87 (460)
T 3mkt_A 14 LIKLATPVLIASVAQTGMGFVDTIMAGG-VSAID-MAAVSIAASIWLPSILFG----VGLLMALVPVVAQLNGAGRQHKI 87 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHH-HTTTT-SSHHHHHHHHHHHHHHHH----HHHHHHHGGGCTTTTSSSSTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHH-HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 9999999999999999999999999875-28899-999999999999999999----99999999999999739998999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999871433210247632102468889999999999999899999999999999986899
Q 537021.9.peg.4 85 WRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFI 164 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~~i~~l~~ifap~~v~~l~apGf~~~~~~~~la~~l~ri~~p~i~f~~l~~i~~~~L~a~~~F~~ 164 (241)
.+..+..+.....+..++ .+...+.|++.. ++ ..++|..+.+..+.++.+|..++..+.....+++++.++...
T Consensus 88 ~~~~~~~l~~~~~~~i~~-~~~~~~~~~i~~-~~----~~~~~~~~~a~~Y~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 161 (460)
T 3mkt_A 88 PFEVHQGLILALLVSVPI-IAVLFQTQFIIR-FM----DVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKP 161 (460)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHTTCS-SC----SSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTT
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HH----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 999999999999999988-899866999999-96----253999999876403010013126788998765204545531
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8677788999999999999960465573168999999999999999999999999
Q 537021.9.peg.4 165 ACMPSMVIHILPIFVLTYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAK 219 (241)
Q Consensus 165 ~a~~pi~~Ni~~I~~~~~~~~~~~~~~~~~~i~~la~g~~lg~~~q~l~~~~~l~ 219 (241)
|....+..+++.++.-.... ++.......++.+.+++.................
T Consensus 162 ~~~~~i~~~i~ni~l~~~li-~g~~~~~~~~~~G~a~a~~~~~~~~~~~~~~~~~ 215 (460)
T 3mkt_A 162 AMVIGFIGLLLNIPLNWIFV-YGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIV 215 (460)
T ss_dssp THHHHHHHHHHHHHHHHHHH-SCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEECCCCEE-ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 57643211332122144101-1465566510789999988889998544677755
No 3
>2knc_A Integrin alpha-IIB; transmembrane signaling, coiled coil, protein structure, alternative splicing, calcium, cell adhesion; NMR {Homo sapiens}
Probab=27.66 E-value=22 Score=13.38 Aligned_cols=35 Identities=29% Similarity=0.286 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 899999999999999999999999973987777688
Q 537021.9.peg.4 195 MIYLLCWGVFLAHAVYFWILYLSAKKSGVELRFQYP 230 (241)
Q Consensus 195 ~i~~la~g~~lg~~~q~l~~~~~l~k~g~~~~~~~~ 230 (241)
.++....+ ++++++-+.+....++|.||.-|-+.+
T Consensus 11 P~WiIivs-v~~GlLlL~ll~~~LwK~GFFKR~rp~ 45 (54)
T 2knc_A 11 PIWWVLVG-VLGGLLLLTILVLAMWKVGFFKRNRPP 45 (54)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTTTCCS
T ss_pred CEEHHHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 73046999-999999999999999982731267998
No 4
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=21.89 E-value=29 Score=12.75 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 55667775589999998510079999
Q 537021.9.peg.4 60 GDGVIHNSFIPMFSQRREQNGSENAW 85 (241)
Q Consensus 60 ~~Gal~~~fIP~~~~~~~~~~~~~a~ 85 (241)
+-|-|.+.-+|.|.+++++....++.
T Consensus 12 IigILaaiaiP~~~~~~~~ar~~~~~ 37 (144)
T 1oqw_A 12 IIGILAAIAIPQYQNYVARSEGASAL 37 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999
No 5
>1va6_A Glutamate--cysteine ligase; glutathione homeostasis, beta barrel, peptide synthesis, transition state analogue; HET: P2S ADP P6G; 2.10A {Escherichia coli} SCOP: d.128.1.4 PDB: 1v4g_A* 2d32_A* 2d33_A*
Probab=9.59 E-value=46 Score=11.64 Aligned_cols=25 Identities=12% Similarity=0.256 Sum_probs=17.9
Q ss_pred HHHHHHH-HHHHHHHCCCHHHHHHHH
Q ss_conf 9999999-999999576567999999
Q 537021.9.peg.4 21 CLGFVRA-SLMAAVFGVGKITDAFYT 45 (241)
Q Consensus 21 ilGf~Re-~~~A~~fGa~~~~DAf~~ 45 (241)
+=+|.|- +++-+.||||++.|.=+.
T Consensus 184 ~rnf~r~~Wll~YLfGASP~~~~sf~ 209 (518)
T 1va6_A 184 IRNYYRFGWVIPYLFGASPAISSSFL 209 (518)
T ss_dssp HHHHHHHTTHHHHHHCCBSEECGGGC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 99999997999998058855532245
No 6
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=8.93 E-value=68 Score=10.71 Aligned_cols=26 Identities=12% Similarity=0.201 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 55667775589999998510079999
Q 537021.9.peg.4 60 GDGVIHNSFIPMFSQRREQNGSENAW 85 (241)
Q Consensus 60 ~~Gal~~~fIP~~~~~~~~~~~~~a~ 85 (241)
+-|.|++..+|.|.+++++....++.
T Consensus 12 IIgILaaia~P~~~~~~~~a~~~~a~ 37 (158)
T 2hi2_A 12 IVGILAAVALPAYQDYTARAQVSEAI 37 (158)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999
No 7
>3nzt_A Glutamate--cysteine ligase; structural genomics, center for structural genomics of infec diseases, csgid, alpha and beta proteins; HET: AMP; 2.00A {Francisella tularensis subsp}
Probab=7.25 E-value=68 Score=10.69 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=14.4
Q ss_pred HHHHHH-HHHHHHHCCCHHHHH
Q ss_conf 999999-999999576567999
Q 537021.9.peg.4 22 LGFVRA-SLMAAVFGVGKITDA 42 (241)
Q Consensus 22 lGf~Re-~~~A~~fGa~~~~DA 42 (241)
=+|.|- +++-+.||||++.|.
T Consensus 191 RNf~r~~Wll~YLfGASP~~~~ 212 (525)
T 3nzt_A 191 NNYFEFMWLLPYLFGASPICAK 212 (525)
T ss_dssp HHHHHHTTHHHHHHCCBCEEEG
T ss_pred HHHHHHHHHHHHHCCCCCCCHH
T ss_conf 9999999999998068720310
No 8
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=5.43 E-value=1.1e+02 Score=9.56 Aligned_cols=30 Identities=30% Similarity=0.328 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999999999999999999997398777
Q 537021.9.peg.4 196 IYLLCWGVFLAHAVYFWILYLSAKKSGVELR 226 (241)
Q Consensus 196 i~~la~g~~lg~~~q~l~~~~~l~k~g~~~~ 226 (241)
.+....+ ++++++........++|.|+.-|
T Consensus 10 ~WiIivs-v~~Gll~L~ll~~~lwKcGFFKR 39 (42)
T 2k1a_A 10 IWWVLVG-VLGGLLLLTILVLAMWKVGFFKR 39 (42)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHTTTTCC
T ss_pred EEHHHHH-HHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 4147999-99999999999999998273246
No 9
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=5.13 E-value=1.2e+02 Score=9.38 Aligned_cols=10 Identities=40% Similarity=0.780 Sum_probs=6.4
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q 537021.9.peg.4 18 VNRCLGFVRA 27 (241)
Q Consensus 18 ~SrilGf~Re 27 (241)
+|++-||+|.
T Consensus 13 lsqvkgfvrk 22 (26)
T 3ewt_E 13 LSQVKGFVRK 22 (26)
T ss_pred HHHHHHHHHH
T ss_conf 9986447764
No 10
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*
Probab=4.76 E-value=1.3e+02 Score=9.16 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=22.5
Q ss_pred HHHHHHCCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9998510079999999-----9999999999999999999871433210
Q 537021.9.peg.4 73 SQRREQNGSENAWRLS-----SEVFSVLLPILMVMIMVIELVLPLLVRY 116 (241)
Q Consensus 73 ~~~~~~~~~~~a~~~~-----~~~~~~~~~~~~~i~~l~~ifap~~v~~ 116 (241)
.|...|| +|...+.. ..-+.=...+..++..+..+|+.|++.+
T Consensus 40 ~e~iaRn-Pea~g~i~~~m~lg~Al~Ea~~iy~lvia~illFanPf~~~ 87 (89)
T 2wgm_A 40 VESVARQ-PEAKGDIISTMVLGQAVAESTGIYSLVIALILLYANPFVGL 87 (89)
T ss_dssp HHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTT
T ss_pred HHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998659-25898499999999999999999999999999988477562
Done!