RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= 537021.9.peg.476_1 (241 letters) >gnl|CDD|31072 COG0728, MviN, Uncharacterized membrane protein, putative virulence factor [General function prediction only]. Length = 518 Score = 101 bits (252), Expect = 2e-22 Identities = 66/238 (27%), Positives = 125/238 (52%), Gaps = 9/238 (3%) Query: 3 MKLVRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDG 62 M L+++ + ++ ++R LGFVR L+AA FG G DAF+ + + RL A +G Sbjct: 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFA--EG 64 Query: 63 VIHNSFIPMFSQRREQNGSENAWRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGF 122 ++F+P+ ++ +++ G E A S V +L +L+++ ++ L P LVR ++APGF Sbjct: 65 AFSSAFVPVLAEAKKKEGEEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGF 124 Query: 123 PYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFIACMPSMVIHILPIFVLTY 182 FL V L+R++ P + FISL++L IL + R+FI +++++ I + + Sbjct: 125 DETDK--FLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPAFAPVLLNVSVIGLALF 182 Query: 183 ALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGVELRFQYPRLTCNVKLFL 240 Y + L WGV + + + + +K+G+ ++ ++ +K FL Sbjct: 183 LGPYFDP-----PLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFKDPGLKRFL 235 >gnl|CDD|111867 pfam03023, MVIN, MviN-like protein. Deletion of the mviN virulence gene in Salmonella enterica serovar. Typhimurium greatly reduces virulence in a mouse model of typhoid-like disease. Open reading frames encoding homologues of MviN have since been identified in a variety of bacteria, including pathogens and non-pathogens and plant-symbionts. In the nitrogen-fixing symbiont Rhizobium tropici, mviN is required for motility. The MviM protein is predicted to be membrane-associated. Length = 452 Score = 72.3 bits (178), Expect = 1e-13 Identities = 54/212 (25%), Positives = 106/212 (50%), Gaps = 12/212 (5%) Query: 30 MAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSENAWRLSS 89 +AA FG G + DAF + + RL A +G ++F+P+F++ ++ + E A Sbjct: 1 IAAYFGAGPLADAFNVAFRIPNLLRRLFA--EGAFSSAFVPVFAELKQADKDEAA-EFVR 57 Query: 90 EVFSVLLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLA 149 V ++L+ +L++ + ++ ++ V ++APGF ++ LTV L R+ P + +SL+ Sbjct: 58 RVSTLLIGVLLL-VTLLGILAAPWVIRLLAPGFDAETFS--LTVSLLRITFPYLLLVSLS 114 Query: 150 SLVTGILFASGRYFI-ACMPSMVIHILPIFVLTYALCYGSNMHKAEMIYLLCWGVFLAHA 208 ++ +L A ++F A P ++ + + +L A N E IY L GV + Sbjct: 115 AVFGAVLNARKKFFAPAFSPVLLNIGVILTLLFLA-----NYFGREPIYGLAIGVLIGGV 169 Query: 209 VYFWILYLSAKKSGVELRFQYPRLTCNVKLFL 240 + + +K+G+ L+ ++ VK FL Sbjct: 170 LQLLVQLPFLRKAGLLLKPRFNFRDKGVKRFL 201 >gnl|CDD|144075 pfam00344, SecY, eubacterial secY protein. Length = 340 Score = 36.3 bits (85), Expect = 0.008 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 6/137 (4%) Query: 51 FIFVRLAARGDGVIHNSFIPMFSQRREQNGSENAWRLSSEVFSVLLPILMVMIMVIELVL 110 IF + + I + I +FS G + L + + L ++++++ + E Sbjct: 116 IIFAGIVSS----IPWAIINLFSLLSSGGGLLSILYLLLLLIATLA-VILLVVYLQEARR 170 Query: 111 PLLVRYVMAPGFPYQSDEYFLTVQLSRV-VMPSIFFISLASLVTGILFASGRYFIACMPS 169 + ++Y + +L ++L+ V+P IF SL + I G F S Sbjct: 171 RIPIQYAKRVVGGGRGQSSYLPIKLNYAGVIPIIFASSLLANPQTIAQFLGSSFPLWPVS 230 Query: 170 MVIHILPIFVLTYALCY 186 + + LPI Y L Y Sbjct: 231 GLAYYLPIGSPVYILFY 247 >gnl|CDD|37782 KOG2571, KOG2571, KOG2571, Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]. Length = 862 Score = 33.4 bits (76), Expect = 0.059 Identities = 34/194 (17%), Positives = 67/194 (34%), Gaps = 16/194 (8%) Query: 54 VRLAARGDGVIH--NSFIPMFSQR-REQNGSENAWRLSSEVFSVLLPILMVMIMVIELVL 110 ++ A D SF+ +QR R N NA + F L + L + Sbjct: 567 LKYVAASDAETEAPESFLEFLNQRRRWLNSIFNAADYLIDHFYYFEENLHNSLRYHTLHV 626 Query: 111 PLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSI---FFISLASLVTGILFASGRYFIACM 167 +L ++ P F + + L + S F L ++ + F+ + Sbjct: 627 EMLYFAILGPFFIFSMANFVLLLSFRGRSWNSTVHNLFPILLFILLCLTFSLFMQLLGAR 686 Query: 168 PSMVIHILPIFVLTYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGVELRF 227 P ++ + + Y++ + LLC GV +++ +L S + + Sbjct: 687 P--RGNVYMLAMSLYSVLI--------IYSLLCAGVLAPASLFEGLLGTSGFIAIIISPL 736 Query: 228 QYPRLTCNVKLFLS 241 ++ LT V L Sbjct: 737 EFHMLTPGVVYILL 750 >gnl|CDD|39744 KOG4544, KOG4544, KOG4544, Uncharacterized conserved protein [Function unknown]. Length = 144 Score = 31.1 bits (70), Expect = 0.25 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 4/51 (7%) Query: 145 FISLASLVTGILFASGRYFIACMPSMVIHILP-IFVLTYA--LCYGSNMHK 192 +I+ + +L A+ F +I I+P F + Y YG + + Sbjct: 55 WIACFGSLAVVLLAAS-SFHHKRLLHLIPIVPLAFFIGYQYDFAYGDQLKR 104 >gnl|CDD|36134 KOG0916, KOG0916, KOG0916, 1,3-beta-glucan synthase/callose synthase catalytic subunit [Cell wall/membrane/envelope biogenesis]. Length = 1679 Score = 28.0 bits (62), Expect = 2.2 Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 23/158 (14%) Query: 77 EQNGSENAWRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLS 136 E++ S A L + + + LP+++ + GF ++ F+ +QL Sbjct: 1279 EKDISLTASPRGCYALEPALAWQSIFQVGFIMFLPMVMEIGLERGF-LRALSRFIKMQLQ 1337 Query: 137 RVVMPSIFF-----ISLASLVTGILFASGRYFIACMPSMVIHILPIFVLTYALCYGSNMH 191 + +FF +L +Y A V+ F Y L S+ Sbjct: 1338 ---LAPVFFTFSLGTYTHYFGRTLLHGGAKY-RATGRGFVVFHAK-FSENYRLYSRSHFV 1392 Query: 192 KAE--MIYLLCWGVF----------LAHAVYFWILYLS 217 K M+ LL + +F + + FW L S Sbjct: 1393 KGSELMLLLLVYQIFGPAYRSSTVYILITISFWFLVGS 1430 >gnl|CDD|73321 cd02753, MopB_Formate-Dh-H, Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.. Length = 512 Score = 26.7 bits (59), Expect = 6.8 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 6/57 (10%) Query: 1 VLMKLVRNFFTLVASESVNRCLGFVRASL---MAAVFGVGKITDAFYTVAYVEFIFV 54 + KL R + +V+ C + +A G G +T++ + + I V Sbjct: 109 LFQKLARAVGG---TNNVDHCARLCHSPTVAGLAETLGSGAMTNSIADIEEADVILV 162 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.334 0.144 0.439 Gapped Lambda K H 0.267 0.0593 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 2,951,268 Number of extensions: 160974 Number of successful extensions: 767 Number of sequences better than 10.0: 1 Number of HSP's gapped: 759 Number of HSP's successfully gapped: 77 Length of query: 241 Length of database: 6,263,737 Length adjustment: 91 Effective length of query: 150 Effective length of database: 4,297,318 Effective search space: 644597700 Effective search space used: 644597700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 56 (25.6 bits)