RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.476_1
         (241 letters)



>gnl|CDD|31072 COG0728, MviN, Uncharacterized membrane protein, putative virulence
           factor [General function prediction only].
          Length = 518

 Score =  101 bits (252), Expect = 2e-22
 Identities = 66/238 (27%), Positives = 125/238 (52%), Gaps = 9/238 (3%)

Query: 3   MKLVRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDG 62
           M L+++   + ++  ++R LGFVR  L+AA FG G   DAF+    +  +  RL A  +G
Sbjct: 7   MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFA--EG 64

Query: 63  VIHNSFIPMFSQRREQNGSENAWRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGF 122
              ++F+P+ ++ +++ G E A   S  V  +L  +L+++ ++  L  P LVR ++APGF
Sbjct: 65  AFSSAFVPVLAEAKKKEGEEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGF 124

Query: 123 PYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFIACMPSMVIHILPIFVLTY 182
                  FL V L+R++ P + FISL++L   IL +  R+FI     +++++  I +  +
Sbjct: 125 DETDK--FLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPAFAPVLLNVSVIGLALF 182

Query: 183 ALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGVELRFQYPRLTCNVKLFL 240
              Y         +  L WGV +   +   +   + +K+G+ ++ ++      +K FL
Sbjct: 183 LGPYFDP-----PLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFKDPGLKRFL 235


>gnl|CDD|111867 pfam03023, MVIN, MviN-like protein.  Deletion of the mviN virulence
           gene in Salmonella enterica serovar. Typhimurium greatly
           reduces virulence in a mouse model of typhoid-like
           disease. Open reading frames encoding homologues of MviN
           have since been identified in a variety of bacteria,
           including pathogens and non-pathogens and
           plant-symbionts. In the nitrogen-fixing symbiont
           Rhizobium tropici, mviN is required for motility. The
           MviM protein is predicted to be membrane-associated.
          Length = 452

 Score = 72.3 bits (178), Expect = 1e-13
 Identities = 54/212 (25%), Positives = 106/212 (50%), Gaps = 12/212 (5%)

Query: 30  MAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSENAWRLSS 89
           +AA FG G + DAF     +  +  RL A  +G   ++F+P+F++ ++ +  E A     
Sbjct: 1   IAAYFGAGPLADAFNVAFRIPNLLRRLFA--EGAFSSAFVPVFAELKQADKDEAA-EFVR 57

Query: 90  EVFSVLLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLA 149
            V ++L+ +L++ + ++ ++    V  ++APGF  ++    LTV L R+  P +  +SL+
Sbjct: 58  RVSTLLIGVLLL-VTLLGILAAPWVIRLLAPGFDAETFS--LTVSLLRITFPYLLLVSLS 114

Query: 150 SLVTGILFASGRYFI-ACMPSMVIHILPIFVLTYALCYGSNMHKAEMIYLLCWGVFLAHA 208
           ++   +L A  ++F  A  P ++   + + +L  A     N    E IY L  GV +   
Sbjct: 115 AVFGAVLNARKKFFAPAFSPVLLNIGVILTLLFLA-----NYFGREPIYGLAIGVLIGGV 169

Query: 209 VYFWILYLSAKKSGVELRFQYPRLTCNVKLFL 240
           +   +     +K+G+ L+ ++      VK FL
Sbjct: 170 LQLLVQLPFLRKAGLLLKPRFNFRDKGVKRFL 201


>gnl|CDD|144075 pfam00344, SecY, eubacterial secY protein. 
          Length = 340

 Score = 36.3 bits (85), Expect = 0.008
 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 6/137 (4%)

Query: 51  FIFVRLAARGDGVIHNSFIPMFSQRREQNGSENAWRLSSEVFSVLLPILMVMIMVIELVL 110
            IF  + +     I  + I +FS      G  +   L   + + L  ++++++ + E   
Sbjct: 116 IIFAGIVSS----IPWAIINLFSLLSSGGGLLSILYLLLLLIATLA-VILLVVYLQEARR 170

Query: 111 PLLVRYVMAPGFPYQSDEYFLTVQLSRV-VMPSIFFISLASLVTGILFASGRYFIACMPS 169
            + ++Y        +    +L ++L+   V+P IF  SL +    I    G  F     S
Sbjct: 171 RIPIQYAKRVVGGGRGQSSYLPIKLNYAGVIPIIFASSLLANPQTIAQFLGSSFPLWPVS 230

Query: 170 MVIHILPIFVLTYALCY 186
            + + LPI    Y L Y
Sbjct: 231 GLAYYLPIGSPVYILFY 247


>gnl|CDD|37782 KOG2571, KOG2571, KOG2571, Chitin synthase/hyaluronan synthase
           (glycosyltransferases) [Cell wall/membrane/envelope
           biogenesis].
          Length = 862

 Score = 33.4 bits (76), Expect = 0.059
 Identities = 34/194 (17%), Positives = 67/194 (34%), Gaps = 16/194 (8%)

Query: 54  VRLAARGDGVIH--NSFIPMFSQR-REQNGSENAWRLSSEVFSVLLPILMVMIMVIELVL 110
           ++  A  D       SF+   +QR R  N   NA     + F      L   +    L +
Sbjct: 567 LKYVAASDAETEAPESFLEFLNQRRRWLNSIFNAADYLIDHFYYFEENLHNSLRYHTLHV 626

Query: 111 PLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSI---FFISLASLVTGILFASGRYFIACM 167
            +L   ++ P F +    + L +        S     F  L  ++  + F+     +   
Sbjct: 627 EMLYFAILGPFFIFSMANFVLLLSFRGRSWNSTVHNLFPILLFILLCLTFSLFMQLLGAR 686

Query: 168 PSMVIHILPIFVLTYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGVELRF 227
           P    ++  + +  Y++          +  LLC GV    +++  +L  S   + +    
Sbjct: 687 P--RGNVYMLAMSLYSVLI--------IYSLLCAGVLAPASLFEGLLGTSGFIAIIISPL 736

Query: 228 QYPRLTCNVKLFLS 241
           ++  LT  V   L 
Sbjct: 737 EFHMLTPGVVYILL 750


>gnl|CDD|39744 KOG4544, KOG4544, KOG4544, Uncharacterized conserved protein
           [Function unknown].
          Length = 144

 Score = 31.1 bits (70), Expect = 0.25
 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 145 FISLASLVTGILFASGRYFIACMPSMVIHILP-IFVLTYA--LCYGSNMHK 192
           +I+    +  +L A+   F       +I I+P  F + Y     YG  + +
Sbjct: 55  WIACFGSLAVVLLAAS-SFHHKRLLHLIPIVPLAFFIGYQYDFAYGDQLKR 104


>gnl|CDD|36134 KOG0916, KOG0916, KOG0916, 1,3-beta-glucan synthase/callose synthase
            catalytic subunit [Cell wall/membrane/envelope
            biogenesis].
          Length = 1679

 Score = 28.0 bits (62), Expect = 2.2
 Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 23/158 (14%)

Query: 77   EQNGSENAWRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLS 136
            E++ S  A           L    +  +   + LP+++   +  GF  ++   F+ +QL 
Sbjct: 1279 EKDISLTASPRGCYALEPALAWQSIFQVGFIMFLPMVMEIGLERGF-LRALSRFIKMQLQ 1337

Query: 137  RVVMPSIFF-----ISLASLVTGILFASGRYFIACMPSMVIHILPIFVLTYALCYGSNMH 191
               +  +FF              +L    +Y  A     V+     F   Y L   S+  
Sbjct: 1338 ---LAPVFFTFSLGTYTHYFGRTLLHGGAKY-RATGRGFVVFHAK-FSENYRLYSRSHFV 1392

Query: 192  KAE--MIYLLCWGVF----------LAHAVYFWILYLS 217
            K    M+ LL + +F          +   + FW L  S
Sbjct: 1393 KGSELMLLLLVYQIFGPAYRSSTVYILITISFWFLVGS 1430


>gnl|CDD|73321 cd02753, MopB_Formate-Dh-H, Formate dehydrogenase H (Formate-Dh-H)
           catalyzes the reversible oxidation of formate to CO2
           with the release of a proton and two electrons. It is a
           component of the anaerobic formate hydrogen lyase
           complex. The E. coli formate dehydrogenase H (Fdh-H) is
           a monomer composed of a single polypeptide chain with a 
           Mo active site region and a [4Fe-4S] center. Members of
           the MopB_Formate-Dh-H CD belong to the
           molybdopterin_binding (MopB) superfamily of proteins..
          Length = 512

 Score = 26.7 bits (59), Expect = 6.8
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 6/57 (10%)

Query: 1   VLMKLVRNFFTLVASESVNRCLGFVRASL---MAAVFGVGKITDAFYTVAYVEFIFV 54
           +  KL R       + +V+ C     +     +A   G G +T++   +   + I V
Sbjct: 109 LFQKLARAVGG---TNNVDHCARLCHSPTVAGLAETLGSGAMTNSIADIEEADVILV 162


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.334    0.144    0.439 

Gapped
Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,951,268
Number of extensions: 160974
Number of successful extensions: 767
Number of sequences better than 10.0: 1
Number of HSP's gapped: 759
Number of HSP's successfully gapped: 77
Length of query: 241
Length of database: 6,263,737
Length adjustment: 91
Effective length of query: 150
Effective length of database: 4,297,318
Effective search space: 644597700
Effective search space used: 644597700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 56 (25.6 bits)