RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= 537021.9.peg.476_1 (241 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 44.5 bits (105), Expect = 2e-05 Identities = 47/288 (16%), Positives = 67/288 (23%), Gaps = 148/288 (51%) Query: 4 KLVRNFFTLVAS--------------ESVNRCLGFVRASLMAAVF-GVGKITDAF----- 43 +L++N+ T +V G A L+A F G G D F Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGE--G--NAQLVAI-FGGQGNTDDYFEELRD 175 Query: 44 -YTVAYVEFIFVRLAARGDGVIHNSFIPMFSQRREQNGSENAWRLSSEVFSVLLPILMVM 102 Y Y + GD I + S+E S L Sbjct: 176 LYQT-YHVLV-------GD------LI----------------KFSAETLSEL------- 198 Query: 103 IMVIELVLPLLVRYVMAPGF------------PYQSDEYFLTVQLSRVVMPSIFFISLAS 150 + L V G P +Y L++ +S P I I LA Sbjct: 199 -----IRTTLDAEKVFTQGLNILEWLENPSNTP--DKDYLLSIPIS---CPLIGVIQLA- 247 Query: 151 LVTGILFASGRYFIACMPSMVIHILPIFVLTYALCYGSNMHKAEMIYLLCW------GV- 203 Y + +L E+ L G+ Sbjct: 248 ----------HYVVTA------KLL-------------GFTPGELRSYLKGATGHSQGLV 278 Query: 204 -------------FLAHA-----VYFWILYLSAKKSGVELRFQYPRLT 233 F V F+I GV YP + Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFI--------GVRCYEAYPNTS 318 Score = 26.4 bits (58), Expect = 6.4 Identities = 8/78 (10%), Positives = 19/78 (24%), Gaps = 30/78 (38%) Query: 39 ITDAFYTVAY----VEFIFVRLAARG---DGVIHNSF-IPMFSQR-----REQNGSENAW 85 + F++ + I L + IP++ R S + Sbjct: 423 VASPFHS-HLLVPASDLINKDLVKNNVSFNA---KDIQIPVYDTFDGSDLRVL--SGS-- 474 Query: 86 RLSSEVFSVLLPILMVMI 103 + ++ I Sbjct: 475 ---------ISERIVDCI 483 >3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Score = 30.1 bits (67), Expect = 0.48 Identities = 14/121 (11%), Positives = 35/121 (28%), Gaps = 1/121 (0%) Query: 97 PILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGIL 156 + + I +L +L R +A + L +QL ++ + G L Sbjct: 321 LMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSL 380 Query: 157 FASGRYFIACMPSMVIHILPIFVLTYALCYGSNMHKAEM-IYLLCWGVFLAHAVYFWILY 215 + + + + Y L + + + + G + + +L Sbjct: 381 RGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLG 440 Query: 216 L 216 Sbjct: 441 Q 441 >1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Length = 920 Score = 26.2 bits (57), Expect = 6.2 Identities = 20/135 (14%), Positives = 50/135 (37%), Gaps = 14/135 (10%) Query: 96 LPILMVMIMVIELVLPLLVRYVMAPGFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGI 155 LP L M +++ +VL + + + + + M + F+ ++ + Sbjct: 752 LPKLWGMSVLLGVVLAVGTWITVTTMYAQ---GENGGIVQNFGNMDEVLFLQISLTENWL 808 Query: 156 LFA--SGRYFIACMPS--MVIHILPIFVLTYALCY-------GSNMHKAEMIYLLCWGVF 204 +F + F + +PS + I + +L +++ I++ +G+F Sbjct: 809 IFITRANGPFWSSIPSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIF 868 Query: 205 LAHAVYFWILYLSAK 219 ++IL S Sbjct: 869 CIMGGVYYILQDSVG 883 >1vkc_A Putative acetyl transferase; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 1.89A {Pyrococcus furiosus} SCOP: d.108.1.1 Length = 158 Score = 26.2 bits (57), Expect = 7.7 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 7/52 (13%) Query: 12 LVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGV 63 VA + LG V + T + +AY+ I V ARG G+ Sbjct: 64 FVALNERSELLGHVW-------ICITLDTVDYVKIAYIYDIEVVKWARGLGI 108 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.334 0.144 0.439 Gapped Lambda K H 0.267 0.0486 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,973,904 Number of extensions: 85509 Number of successful extensions: 278 Number of sequences better than 10.0: 1 Number of HSP's gapped: 277 Number of HSP's successfully gapped: 25 Length of query: 241 Length of database: 5,693,230 Length adjustment: 90 Effective length of query: 151 Effective length of database: 3,511,270 Effective search space: 530201770 Effective search space used: 530201770 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 55 (25.5 bits)