BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 537021.9.peg.476_1 (241 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >537021.9.peg.476_1 Length = 241 Score = 488 bits (1255), Expect = e-140, Method: Compositional matrix adjust. Identities = 241/241 (100%), Positives = 241/241 (100%) Query: 1 VLMKLVRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARG 60 VLMKLVRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARG Sbjct: 1 VLMKLVRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARG 60 Query: 61 DGVIHNSFIPMFSQRREQNGSENAWRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAP 120 DGVIHNSFIPMFSQRREQNGSENAWRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAP Sbjct: 61 DGVIHNSFIPMFSQRREQNGSENAWRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAP 120 Query: 121 GFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFIACMPSMVIHILPIFVL 180 GFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFIACMPSMVIHILPIFVL Sbjct: 121 GFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFIACMPSMVIHILPIFVL 180 Query: 181 TYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGVELRFQYPRLTCNVKLFL 240 TYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGVELRFQYPRLTCNVKLFL Sbjct: 181 TYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGVELRFQYPRLTCNVKLFL 240 Query: 241 S 241 S Sbjct: 241 S 241 >gi|254780793|ref|YP_003065206.1| integral membrane protein MviN [Candidatus Liberibacter asiaticus str. psy62] Length = 518 Score = 280 bits (716), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 147/238 (61%), Positives = 188/238 (78%), Gaps = 4/238 (1%) Query: 3 MKLVRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDG 62 MK++RNF T+ AS +R LGF+R +L+AA GVGK+TD FY Y+ FIF RLAA +G Sbjct: 1 MKIIRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAA--EG 58 Query: 63 VIHNSFIPMFSQRREQNGSENAWRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGF 122 + HNSFIP+FSQ +E NGSE+A RLSSE+FS+L+ L+V+ +V+EL+LPLL+R+++APGF Sbjct: 59 IFHNSFIPLFSQEKENNGSESAQRLSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGF 118 Query: 123 PYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFIACMPSMVIHILPIFVLTY 182 QSD+YFLT+QLSRV+ PSI FISLASLVTG+LFA GRYFIA + +VI++ PIF LTY Sbjct: 119 ADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIASIAPIVINVFPIFALTY 178 Query: 183 ALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGVELRFQYPRLTCNVKLFL 240 AL + S+ E YLL WGVFL++ V+FWI+Y AK GV+LRFQYPRLT NVK FL Sbjct: 179 ALWHPSSPQ--ETTYLLAWGVFLSNVVHFWIVYCCAKNDGVKLRFQYPRLTHNVKFFL 234 >gi|254780502|ref|YP_003064915.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] Length = 954 Score = 28.9 bits (63), Expect = 0.094, Method: Composition-based stats. Identities = 11/23 (47%), Positives = 15/23 (65%) Query: 127 DEYFLTVQLSRVVMPSIFFISLA 149 D YFL + SR+ MP FF+ +A Sbjct: 303 DRYFLHINGSRIEMPQAFFMRVA 325 Score = 22.3 bits (46), Expect = 8.1, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 5/51 (9%) Query: 19 NRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFI 69 + C+ + +A + GV + D Y + ++V+ GD + NSF+ Sbjct: 761 SNCMAIAPTATIANICGVSQSIDPSY-----QNLYVKSNMSGDFTVVNSFL 806 >gi|254781033|ref|YP_003065446.1| HemY domain-containing protein [Candidatus Liberibacter asiaticus str. psy62] Length = 492 Score = 25.0 bits (53), Expect = 1.2, Method: Compositional matrix adjust. Identities = 10/21 (47%), Positives = 17/21 (80%), Gaps = 1/21 (4%) Query: 155 ILFASGRYFIACMPSMVIHIL 175 +LFA R+F++C P+M+ H+L Sbjct: 57 LLFAVSRFFLSC-PAMLFHML 76 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.334 0.144 0.439 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 138,185 Number of Sequences: 1233 Number of extensions: 5220 Number of successful extensions: 22 Number of sequences better than 100.0: 7 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 8 length of query: 241 length of database: 328,796 effective HSP length: 71 effective length of query: 170 effective length of database: 241,253 effective search space: 41013010 effective search space used: 41013010 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 37 (18.9 bits)