BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.476_1
         (241 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.476_1 
          Length = 241

 Score =  488 bits (1255), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 241/241 (100%), Positives = 241/241 (100%)

Query: 1   VLMKLVRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARG 60
           VLMKLVRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARG
Sbjct: 1   VLMKLVRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARG 60

Query: 61  DGVIHNSFIPMFSQRREQNGSENAWRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAP 120
           DGVIHNSFIPMFSQRREQNGSENAWRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAP
Sbjct: 61  DGVIHNSFIPMFSQRREQNGSENAWRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAP 120

Query: 121 GFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFIACMPSMVIHILPIFVL 180
           GFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFIACMPSMVIHILPIFVL
Sbjct: 121 GFPYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFIACMPSMVIHILPIFVL 180

Query: 181 TYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGVELRFQYPRLTCNVKLFL 240
           TYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGVELRFQYPRLTCNVKLFL
Sbjct: 181 TYALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGVELRFQYPRLTCNVKLFL 240

Query: 241 S 241
           S
Sbjct: 241 S 241


>gi|254780793|ref|YP_003065206.1| integral membrane protein MviN [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 518

 Score =  280 bits (716), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 147/238 (61%), Positives = 188/238 (78%), Gaps = 4/238 (1%)

Query: 3   MKLVRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDG 62
           MK++RNF T+ AS   +R LGF+R +L+AA  GVGK+TD FY   Y+ FIF RLAA  +G
Sbjct: 1   MKIIRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAA--EG 58

Query: 63  VIHNSFIPMFSQRREQNGSENAWRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGF 122
           + HNSFIP+FSQ +E NGSE+A RLSSE+FS+L+  L+V+ +V+EL+LPLL+R+++APGF
Sbjct: 59  IFHNSFIPLFSQEKENNGSESAQRLSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGF 118

Query: 123 PYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFIACMPSMVIHILPIFVLTY 182
             QSD+YFLT+QLSRV+ PSI FISLASLVTG+LFA GRYFIA +  +VI++ PIF LTY
Sbjct: 119 ADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIASIAPIVINVFPIFALTY 178

Query: 183 ALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGVELRFQYPRLTCNVKLFL 240
           AL + S+    E  YLL WGVFL++ V+FWI+Y  AK  GV+LRFQYPRLT NVK FL
Sbjct: 179 ALWHPSSPQ--ETTYLLAWGVFLSNVVHFWIVYCCAKNDGVKLRFQYPRLTHNVKFFL 234


>gi|254780502|ref|YP_003064915.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 954

 Score = 28.9 bits (63), Expect = 0.094,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 127 DEYFLTVQLSRVVMPSIFFISLA 149
           D YFL +  SR+ MP  FF+ +A
Sbjct: 303 DRYFLHINGSRIEMPQAFFMRVA 325



 Score = 22.3 bits (46), Expect = 8.1,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 19  NRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDGVIHNSFI 69
           + C+     + +A + GV +  D  Y     + ++V+    GD  + NSF+
Sbjct: 761 SNCMAIAPTATIANICGVSQSIDPSY-----QNLYVKSNMSGDFTVVNSFL 806


>gi|254781033|ref|YP_003065446.1| HemY domain-containing protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 492

 Score = 25.0 bits (53), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 10/21 (47%), Positives = 17/21 (80%), Gaps = 1/21 (4%)

Query: 155 ILFASGRYFIACMPSMVIHIL 175
           +LFA  R+F++C P+M+ H+L
Sbjct: 57  LLFAVSRFFLSC-PAMLFHML 76


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.334    0.144    0.439 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,185
Number of Sequences: 1233
Number of extensions: 5220
Number of successful extensions: 22
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 8
length of query: 241
length of database: 328,796
effective HSP length: 71
effective length of query: 170
effective length of database: 241,253
effective search space: 41013010
effective search space used: 41013010
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 37 (18.9 bits)