HHsearch alignment for GI: peg_477 and conserved domain: PRK00187
>PRK00187 multidrug efflux protein NorA; Provisional.
Probab=99.34 E-value=2.5e-10 Score=69.30 Aligned_cols=146 Identities=14% Similarity=0.064 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2677998899629789999999999999999999999999998899999997078-988899877777899999999999
Q 537021.9.peg.4 3 ALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERG-AFTAQDTILVSSYLSIYSTEIVGF 81 (235)
Q Consensus 3 allP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G-~f~~~~~~~~~~~L~~~~~~l~~~ 81 (235)
T Consensus 294 A~~~~vG~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~lFt~~~d~~~~evi~l~~~~l~i~~~~~~~~ 373 (462)
T PRK00187 294 AVTMRVGQHYGAGRLLEARRAGRVGIGFGAVAMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFD 373 (462)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999876899999999999999999999999999999999999998628898523999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 655344577877665433457889999-8886432455310--121023131027999999999999997
Q 537021.9.peg.4 82 LLSRVLLSEFYARNDVKTPAKFYILSI-VMGFVIAIGLFPF--IGGYGIATAEVSWVWVNTICLAVALLK 148 (235)
Q Consensus 82 ~l~~il~~~~ya~~~~~~p~~~~~i~~-iini~l~~~li~~--~g~~G~a~at~is~~v~~~il~~~l~k 148 (235)
T Consensus 374 ~~~~v~~g~lrg~G~~~~~~~~~~i~~w~v~vPla~~l~~~~~~G~~GiW~g~~i~~~~~~i~~~~~~~w 443 (462)
T PRK00187 374 GTQTIAMGAIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (462)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999982743999999999999999999999999857992336898999999999999999999