HHsearch alignment for GI: peg_477 and conserved domain: TIGR00797
>TIGR00797 matE MATE efflux family protein; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transporter activity, 0015297 antiporter activity, 0006855 multidrug transport, 0016020 membrane.
Probab=99.94 E-value=1e-23 Score=135.84 Aligned_cols=227 Identities=19% Similarity=0.213 Sum_probs=175.8
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02677998899629789999999999999999999999999998899999997078988899877777899999999999
Q 537021.9.peg.4 2 AALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGF 81 (235)
Q Consensus 2 ~allP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~ 81 (235)
T Consensus 51 ~a~~~~~aq~~Ga~~~~~~~~~~~~~~~la~~lg~~~~~~~~~~~~~l~~~~-~---~~~~~~~~a~~Yl~~~~~g~P~~ 126 (412)
T TIGR00797 51 TATTALVAQAVGAGNRQRLGRQAQQSLLLALLLGLPVLLVGLFFIDPLLSLM-G---ADGEVAELAQEYLRILILGIPAY 126 (412)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C---CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8899999998833248999999999999999999999999998888899841-7---98889998999899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----CCCCHHHHHHHHHHHHHHHHHHHHHHHH---C--
Q ss_conf 655344577877665433457889999888643245531-0-----1210231310279999999999999971---1--
Q 537021.9.peg.4 82 LLSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFP-F-----IGGYGIATAEVSWVWVNTICLAVALLKR---R-- 150 (235)
Q Consensus 82 ~l~~il~~~~ya~~~~~~p~~~~~i~~iini~l~~~li~-~-----~g~~G~a~at~is~~v~~~il~~~l~k~---~-- 150 (235)
T Consensus 127 ~~~~~~~~~l~g~~~t~~p~~~~~~~~~~Ni~L~~~li~G~fG~P~lG~~GaA~At~~s~~~~~~~~~~~~~~~~~~~~~ 206 (412)
T TIGR00797 127 LLSFVLRGFLRGQGDTKTPMYITLIGNLLNIVLDYILIFGKFGFPELGIVGAALATVISYWLMFLLLLYYIKKSAQAKKI 206 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf 99999999974542258999999999999999838987178887124777668999999999999999999971212432
Q ss_pred ------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHCCCCCHHHHHHHHHHHHHHHHHHH-HHHH
Q ss_conf ------3666688999999999999999999999999864---------32022105999999999999999999-9999
Q 537021.9.peg.4 151 ------QIDLPFQTIYRILSIFISSGLMGMFIVFFKPCLF---------NQLSAETAFSPFKNLAIILSGAVLVY-LCSI 214 (235)
Q Consensus 151 ------~~~~~~~~~~~~~k~~~as~im~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~y-~~~~ 214 (235)
T Consensus 207 ~~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~~~~~~~~~~~~~~~~G~~~~lA~~~~~~~~~~~~~m~~~G~~~A~~~~v 286 (412)
T TIGR00797 207 GLKWEGLLKPDWEVLKRLLKLGLPIALRVILESLSFALVALLVARLGGSIALAAHQVALNVESLLFMPAFGLGIAVSILV 286 (412)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 12244433025899999998708999999999999999999987316732467789999999999999989999999999
Q ss_pred HHHHHHHHHHHHHHHHCC
Q ss_conf 999866768999997305
Q 537021.9.peg.4 215 SLLLGKGFLASLKYSLKT 232 (235)
Q Consensus 215 ~~~~~~~~~~~l~~~~r~ 232 (235)
T Consensus 287 G~~lGa~~~~~a~~~~~~ 304 (412)
T TIGR00797 287 GQALGAGDPKRAKEVARV 304 (412)
T ss_pred HHHHCCCCHHHHHHHHHH
T ss_conf 998514687899999999