HHsearch alignment for GI: peg_477 and conserved domain: TIGR00797

>TIGR00797 matE MATE efflux family protein; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transporter activity, 0015297 antiporter activity, 0006855 multidrug transport, 0016020 membrane.
Probab=99.94  E-value=1e-23  Score=135.84  Aligned_cols=227  Identities=19%  Similarity=0.213  Sum_probs=175.8

Q ss_pred             CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             02677998899629789999999999999999999999999998899999997078988899877777899999999999
Q 537021.9.peg.4    2 AALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGF   81 (235)
Q Consensus         2 ~allP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~   81 (235)
T Consensus        51 ~a~~~~~aq~~Ga~~~~~~~~~~~~~~~la~~lg~~~~~~~~~~~~~l~~~~-~---~~~~~~~~a~~Yl~~~~~g~P~~  126 (412)
T TIGR00797        51 TATTALVAQAVGAGNRQRLGRQAQQSLLLALLLGLPVLLVGLFFIDPLLSLM-G---ADGEVAELAQEYLRILILGIPAY  126 (412)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C---CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8899999998833248999999999999999999999999998888899841-7---98889998999899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----CCCCHHHHHHHHHHHHHHHHHHHHHHHH---C--
Q ss_conf             655344577877665433457889999888643245531-0-----1210231310279999999999999971---1--
Q 537021.9.peg.4   82 LLSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFP-F-----IGGYGIATAEVSWVWVNTICLAVALLKR---R--  150 (235)
Q Consensus        82 ~l~~il~~~~ya~~~~~~p~~~~~i~~iini~l~~~li~-~-----~g~~G~a~at~is~~v~~~il~~~l~k~---~--  150 (235)
T Consensus       127 ~~~~~~~~~l~g~~~t~~p~~~~~~~~~~Ni~L~~~li~G~fG~P~lG~~GaA~At~~s~~~~~~~~~~~~~~~~~~~~~  206 (412)
T TIGR00797       127 LLSFVLRGFLRGQGDTKTPMYITLIGNLLNIVLDYILIFGKFGFPELGIVGAALATVISYWLMFLLLLYYIKKSAQAKKI  206 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf             99999999974542258999999999999999838987178887124777668999999999999999999971212432


Q ss_pred             ------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHCCCCCHHHHHHHHHHHHHHHHHHH-HHHH
Q ss_conf             ------3666688999999999999999999999999864---------32022105999999999999999999-9999
Q 537021.9.peg.4  151 ------QIDLPFQTIYRILSIFISSGLMGMFIVFFKPCLF---------NQLSAETAFSPFKNLAIILSGAVLVY-LCSI  214 (235)
Q Consensus       151 ------~~~~~~~~~~~~~k~~~as~im~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~y-~~~~  214 (235)
T Consensus       207 ~~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~~~~~~~~~~~~~~~~G~~~~lA~~~~~~~~~~~~~m~~~G~~~A~~~~v  286 (412)
T TIGR00797       207 GLKWEGLLKPDWEVLKRLLKLGLPIALRVILESLSFALVALLVARLGGSIALAAHQVALNVESLLFMPAFGLGIAVSILV  286 (412)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             12244433025899999998708999999999999999999987316732467789999999999999989999999999


Q ss_pred             HHHHHHHHHHHHHHHHCC
Q ss_conf             999866768999997305
Q 537021.9.peg.4  215 SLLLGKGFLASLKYSLKT  232 (235)
Q Consensus       215 ~~~~~~~~~~~l~~~~r~  232 (235)
T Consensus       287 G~~lGa~~~~~a~~~~~~  304 (412)
T TIGR00797       287 GQALGAGDPKRAKEVARV  304 (412)
T ss_pred             HHHHCCCCHHHHHHHHHH
T ss_conf             998514687899999999