HHsearch alignment for GI: peg_477 and conserved domain: TIGR00797
>TIGR00797 matE MATE efflux family protein; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transporter activity, 0015297 antiporter activity, 0006855 multidrug transport, 0016020 membrane.
Probab=98.47 E-value=8.1e-06 Score=46.90 Aligned_cols=109 Identities=18% Similarity=0.225 Sum_probs=96.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7998899629789999999999999999999999999998899---9999970789888998777778999999999996
Q 537021.9.peg.4 6 PKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKE---IIQTLYERGAFTAQDTILVSSYLSIYSTEIVGFL 82 (235)
Q Consensus 6 P~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~p---iv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~~ 82 (235)
T Consensus 284 ~~vG~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Pi~~-lFt~---d~~v~~~~~~~l~~~~~~~~~~~ 359 (412)
T TIGR00797 284 ILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFREVGLPIAR-LFTN---DPEVLELAASYLIFVALFQFSDG 359 (412)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH-HHCC---CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999985146878999999999999999999999999983023642455-5079---57699999999999999998778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_conf 5534457787766543345788999988-86432455
Q 537021.9.peg.4 83 LSRVLLSEFYARNDVKTPAKFYILSIVM-GFVIAIGL 118 (235)
Q Consensus 83 l~~il~~~~ya~~~~~~p~~~~~i~~ii-ni~l~~~l 118 (235)
T Consensus 360 ~~~v~~G~lrG~G~~~~~~~~~~~~~~~~~lP~~~ll 396 (412)
T TIGR00797 360 IQFVLSGVLRGAGDTKVILIITFISYWVIGLPVGYLL 396 (412)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999998327257999999999999999999999