HHsearch alignment for GI: peg_477 and conserved domain: TIGR00797

>TIGR00797 matE MATE efflux family protein; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transporter activity, 0015297 antiporter activity, 0006855 multidrug transport, 0016020 membrane.
Probab=98.47  E-value=8.1e-06  Score=46.90  Aligned_cols=109  Identities=18%  Similarity=0.225  Sum_probs=96.2

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7998899629789999999999999999999999999998899---9999970789888998777778999999999996
Q 537021.9.peg.4    6 PKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKE---IIQTLYERGAFTAQDTILVSSYLSIYSTEIVGFL   82 (235)
Q Consensus         6 P~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~p---iv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~~   82 (235)
T Consensus       284 ~~vG~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Pi~~-lFt~---d~~v~~~~~~~l~~~~~~~~~~~  359 (412)
T TIGR00797       284 ILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFREVGLPIAR-LFTN---DPEVLELAASYLIFVALFQFSDG  359 (412)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH-HHCC---CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999985146878999999999999999999999999983023642455-5079---57699999999999999998778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_conf             5534457787766543345788999988-86432455
Q 537021.9.peg.4   83 LSRVLLSEFYARNDVKTPAKFYILSIVM-GFVIAIGL  118 (235)
Q Consensus        83 l~~il~~~~ya~~~~~~p~~~~~i~~ii-ni~l~~~l  118 (235)
T Consensus       360 ~~~v~~G~lrG~G~~~~~~~~~~~~~~~~~lP~~~ll  396 (412)
T TIGR00797       360 IQFVLSGVLRGAGDTKVILIITFISYWVIGLPVGYLL  396 (412)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999998327257999999999999999999999