HHsearch alignment for GI: peg_477 and conserved domain: TIGR01695
>TIGR01695 mviN integral membrane protein MviN; InterPro: IPR004268 The sequencing of a number of pathogenic bacterial genomes has led to novel virulence proteins being discovered that are yet to be biochemically characterised. One example is the MviN family of proteins, first described in Salmonella , and conserved across a wide variety of pathogens in both animals and plants. Further work on these proteins of as yet unknown function has revealed they are integral membrane molecules, and are part of an operon essential in at least one species . ; GO: 0009405 pathogenesis, 0016021 integral to membrane.
Probab=100.00 E-value=0 Score=263.44 Aligned_cols=225 Identities=29% Similarity=0.420 Sum_probs=204.0
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 90267799889962978999999999999999999999999999889999999707898889987777789999999999
Q 537021.9.peg.4 1 MAALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVG 80 (235)
Q Consensus 1 ~~allP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~ 80 (235)
T Consensus 304 ~~v~lP~~s~~~~~~~~~~~~~~~~~~i~~~~~l~~P~s~~l~~ls~~I~~llf~~g~F~~~~~~~ta~~L~~y~lGl~~ 383 (538)
T TIGR01695 304 ATVLLPKLSKHASEGNWNELEELLNQGIRLTLLLTIPSSFGLLVLSEPIVSLLFERGAFSEEDALMTATILAAYALGLIF 383 (538)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999988502686899999999999999999999999999889999988537888888999999999999998999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 96553445778776654334578899998886432----45531012102313102799999999999999711366668
Q 537021.9.peg.4 81 FLLSRVLLSEFYARNDVKTPAKFYILSIVMGFVIA----IGLFPFIGGYGIATAEVSWVWVNTICLAVALLKRRQIDLPF 156 (235)
Q Consensus 81 ~~l~~il~~~~ya~~~~~~p~~~~~i~~iini~l~----~~li~~~g~~G~a~at~is~~v~~~il~~~l~k~~~~~~~~ 156 (235)
T Consensus 384 ~~l~~vL~~~fYA~~d~~tP~~~~~~~~~~n~~l~GlCy~~l~~~l~~~G~a~a~~~~~~~~~~~l~~~l~~~~~~~~~~ 463 (538)
T TIGR01695 384 YSLQKVLLRAFYARKDTKTPFIVSVISVVLNVLLSGLCYLLLIFPLGLSGIALATSLAAIVSAVLLYLRLKKRLKGILDI 463 (538)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 99999998778755302048999999999999998899998888873689999999999999999999986520477613
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999999---999999999999864320221-05999999999999999999999999986676899
Q 537021.9.peg.4 157 QTIYRILSIFISS---GLMGMFIVFFKPCLFNQLSAE-TAFSPFKNLAIILSGAVLVYLCSISLLLGKGFLAS 225 (235)
Q Consensus 157 ~~~~~~~k~~~as---~im~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~ 225 (235)
T Consensus 464 ~~~~~l~~~v~as~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~i~~~~y~~~~~~~~~~~~~~~ 536 (538)
T TIGR01695 464 GVLKKLLKLVIASILAAIIGVVLYLLVSVLAWSLGGKKFLVKNLLGLLALGLIGLLVYFLALALLKIEELELL 536 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5789999999999999999999999988652033443124566899999999999999999999629999874