HHsearch alignment for GI: peg_477 and conserved domain: TIGR01695
>TIGR01695 mviN integral membrane protein MviN; InterPro: IPR004268 The sequencing of a number of pathogenic bacterial genomes has led to novel virulence proteins being discovered that are yet to be biochemically characterised. One example is the MviN family of proteins, first described in Salmonella , and conserved across a wide variety of pathogens in both animals and plants. Further work on these proteins of as yet unknown function has revealed they are integral membrane molecules, and are part of an operon essential in at least one species . ; GO: 0009405 pathogenesis, 0016021 integral to membrane.
Probab=99.00 E-value=6.8e-07 Score=52.26 Aligned_cols=183 Identities=16% Similarity=0.139 Sum_probs=142.7
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH---HHHHHHHHHHHHHHH
Q ss_conf 02677998899629789999999999999999999999999998899999997078988899---877777899999999
Q 537021.9.peg.4 2 AALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQD---TILVSSYLSIYSTEI 78 (235)
Q Consensus 2 ~allP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~---~~~~~~~L~~~~~~l 78 (235)
T Consensus 63 ~aFvP~f~~~~~~~g~~~~~~~f~~~~~~l~~~~~~l~~~~~~~~a~~~~~l~a~g~~~~~~~nk~~~a~~l~~~~~pyl 142 (538)
T TIGR01695 63 SAFVPVFKKAKKKEGEKEARRAFAEKVLTLLILVLLLVVLLGIFFAPIVISLLAPGLFADDAANKFSLAVSLLRITFPYL 142 (538)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999999615557888999999999999999999999999788899731764357402458999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH------------HHHHHHHHHHHHHHHHHH
Q ss_conf 99965534457787766543345788999988864324553101210231------------310279999999999999
Q 537021.9.peg.4 79 VGFLLSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFPFIGGYGIA------------TAEVSWVWVNTICLAVAL 146 (235)
Q Consensus 79 ~~~~l~~il~~~~ya~~~~~~p~~~~~i~~iini~l~~~li~~~g~~G~a------------~at~is~~v~~~il~~~l 146 (235)
T Consensus 143 ~l~sL~~~~~~~Ln~~~~F~~ps~~P~l~N~~~I~~l~~~~~~~~~~~~~g~~~~~~~~LL~~gvl~GG~~Q~l~~~~~l 222 (538)
T TIGR01695 143 LLISLAAVFGAILNARERFFIPSFSPVLFNISVIVSLLFLDVSLGQLALAGMYLALIELLLAIGVLIGGVAQLLIQLPAL 222 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999997755552567999999999999999998630124666678999999999999999999999999997
Q ss_pred HHHC--------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9711--------36666889999999999999999999999998643
Q 537021.9.peg.4 147 LKRR--------QIDLPFQTIYRILSIFISSGLMGMFIVFFKPCLFN 185 (235)
Q Consensus 147 ~k~~--------~~~~~~~~~~~~~k~~~as~im~~~~~~~~~~~~~ 185 (235)
T Consensus 223 ~~~G~R~~~~~prf~~~~~~l~~~l~~~~p~-~lg~s~~q~~~l~~t 268 (538)
T TIGR01695 223 RKAGIRGLLLKPRFNFRDPGLKRFLKLMLPT-TLGVSASQITLLINT 268 (538)
T ss_pred HCCCCHHHHHHHCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 1067303553101033545899999999999-999999999999999