Query 537021.9.peg.477_1
Match_columns 235
No_of_seqs 133 out of 1753
Neff 8.8
Searched_HMMs 39220
Date Tue May 24 22:25:10 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_477.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 pfam03023 MVIN MviN-like prote 100.0 0 0 274.1 23.5 189 2-190 256-444 (452)
2 TIGR01695 mviN integral membra 100.0 0 0 263.4 27.4 225 1-225 304-536 (538)
3 COG0728 MviN Uncharacterized m 100.0 0 0 260.7 26.6 216 2-217 290-507 (518)
4 PRK10459 colanic acid exporter 100.0 2.1E-25 5.4E-30 144.3 25.8 219 2-234 266-484 (492)
5 TIGR00797 matE MATE efflux fam 99.9 1E-23 2.7E-28 135.8 26.3 227 2-232 51-304 (412)
6 COG0534 NorM Na+-driven multid 99.9 6.1E-22 1.6E-26 127.0 25.6 226 3-232 75-322 (455)
7 PRK10189 hypothetical protein; 99.9 8.2E-22 2.1E-26 126.4 26.0 170 3-174 90-276 (481)
8 PRK09575 vmrA multidrug efflux 99.9 8.5E-22 2.2E-26 126.3 25.8 223 6-232 77-319 (456)
9 PRK01766 multidrug efflux prot 99.9 2.1E-21 5.3E-26 124.4 26.0 167 4-174 68-250 (452)
10 TIGR02900 spore_V_B stage V sp 99.9 8.4E-22 2.1E-26 126.4 21.5 195 2-212 294-492 (493)
11 PRK10367 DNA-damage-inducible 99.9 1.8E-20 4.6E-25 119.7 25.5 141 5-149 70-212 (439)
12 PRK00187 multidrug efflux prot 99.9 3.8E-19 9.7E-24 113.2 26.0 225 3-232 68-317 (462)
13 COG2244 RfbX Membrane protein 99.9 1.8E-18 4.6E-23 109.8 25.6 140 2-148 271-410 (480)
14 pfam03023 MVIN MviN-like prote 99.7 4.6E-13 1.2E-17 82.9 25.6 182 2-187 35-224 (452)
15 PRK09575 vmrA multidrug efflux 99.6 2.3E-13 5.9E-18 84.4 17.3 143 2-147 295-437 (456)
16 pfam01554 MatE MatE. The MatE 99.5 3.5E-13 8.9E-18 83.5 14.4 112 2-117 50-161 (161)
17 PRK01766 multidrug efflux prot 99.5 6.5E-12 1.7E-16 77.2 17.5 145 2-150 293-440 (452)
18 PRK10189 hypothetical protein; 99.4 4.4E-11 1.1E-15 73.1 17.2 144 3-150 320-466 (481)
19 COG0534 NorM Na+-driven multid 99.4 1.5E-10 3.9E-15 70.4 17.3 145 2-150 298-444 (455)
20 PRK00187 multidrug efflux prot 99.3 2.5E-10 6.4E-15 69.3 17.1 146 3-148 294-443 (462)
21 COG0728 MviN Uncharacterized m 99.1 1.6E-07 4E-12 55.4 25.7 182 2-185 68-256 (518)
22 TIGR02900 spore_V_B stage V sp 99.1 6.4E-09 1.6E-13 62.3 15.0 137 7-151 63-206 (493)
23 TIGR01695 mviN integral membra 99.0 6.8E-07 1.7E-11 52.3 27.5 183 2-185 63-268 (538)
24 PRK10367 DNA-damage-inducible 98.9 2.5E-07 6.4E-12 54.4 17.3 142 3-149 290-431 (439)
25 KOG1347 consensus 98.9 1.9E-08 4.8E-13 60.0 10.0 206 3-214 87-302 (473)
26 KOG2864 consensus 98.8 5.3E-07 1.4E-11 52.8 15.6 139 6-148 307-448 (530)
27 pfam04506 Rft-1 Rft protein. 98.6 1.5E-05 3.8E-10 45.6 19.3 131 16-150 322-455 (533)
28 TIGR00797 matE MATE efflux fam 98.5 8.1E-06 2.1E-10 46.9 13.0 109 6-118 284-396 (412)
29 PRK10459 colanic acid exporter 97.2 0.0086 2.2E-07 31.9 22.3 139 19-166 72-213 (492)
30 pfam01943 Polysacc_synt Polysa 95.0 0.18 4.5E-06 25.4 23.4 154 6-171 58-215 (272)
31 pfam04138 GtrA GtrA-like prote 81.3 3.1 8E-05 19.1 11.6 87 102-190 4-91 (116)
32 TIGR00906 2A0303 cationic amin 71.0 6.2 0.00016 17.6 3.8 23 96-118 386-408 (616)
33 COG4267 Predicted membrane pro 68.8 7.1 0.00018 17.4 15.2 123 8-148 88-210 (467)
34 PRK11017 codB cytosine permeas 67.5 7.6 0.00019 17.2 14.5 17 3-20 187-203 (394)
35 PTZ00042 stevor; Provisional 54.7 13 0.00034 16.0 3.0 34 120-153 260-293 (304)
36 TIGR00795 lctP transporter, la 40.1 24 0.0006 14.8 8.3 108 34-148 173-291 (575)
37 COG4858 Uncharacterized membra 37.7 26 0.00066 14.6 7.9 65 122-187 125-189 (226)
38 pfam01312 Bac_export_2 FlhB Hr 32.6 32 0.00081 14.1 16.2 24 157-180 140-163 (343)
39 PRK11056 hypothetical protein; 31.6 33 0.00084 14.0 9.1 92 93-194 5-96 (120)
40 COG1457 CodB Purine-cytosine p 25.3 44 0.0011 13.4 13.4 140 3-150 211-360 (442)
41 PRK05812 secD preprotein trans 25.3 44 0.0011 13.4 16.6 64 78-148 356-426 (513)
42 PRK11644 sensory histidine kin 24.7 45 0.0011 13.4 19.5 135 7-150 24-163 (497)
43 PRK12933 secD preprotein trans 24.5 45 0.0011 13.4 13.9 86 56-148 398-518 (604)
44 PRK11281 potassium efflux prot 23.0 49 0.0012 13.2 21.4 46 5-51 523-568 (1107)
45 pfam03597 CcoS Cytochrome oxid 21.2 53 0.0014 13.0 2.0 34 32-65 3-36 (45)
46 PRK10655 potE putrescine trans 21.1 54 0.0014 13.0 16.9 13 98-110 319-331 (438)
No 1
>pfam03023 MVIN MviN-like protein. Deletion of the mviN virulence gene in Salmonella enterica serovar. Typhimurium greatly reduces virulence in a mouse model of typhoid-like disease. Open reading frames encoding homologues of MviN have since been identified in a variety of bacteria, including pathogens and non-pathogens and plant-symbionts. In the nitrogen-fixing symbiont Rhizobium tropici, mviN is required for motility. The MviM protein is predicted to be membrane-associated.
Probab=100.00 E-value=0 Score=274.09 Aligned_cols=189 Identities=29% Similarity=0.432 Sum_probs=182.4
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02677998899629789999999999999999999999999998899999997078988899877777899999999999
Q 537021.9.peg.4 2 AALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGF 81 (235)
Q Consensus 2 ~allP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~ 81 (235)
+|++|++||+.++||++++++.++++++..+++++|++++++++++|+++++||||+||++|+..|+.+|.+|++|++++
T Consensus 256 tv~~P~lS~~~~~~d~~~~~~~l~~~l~~~~~l~iPa~v~l~vl~~pIv~llf~rG~F~~~~~~~ta~~L~~y~~gl~~~ 335 (452)
T pfam03023 256 TVLLPRLSRHAKDGDWDEFLDLLDQAIRLTLLLMIPASFGLLVLSDPIVSVLYERGAFSPEDVTATAGVLAAYALGLIPY 335 (452)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98889999998768999999999999999999999999999997899999998048999999999999999999988999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 65534457787766543345788999988864324553101210231310279999999999999971136666889999
Q 537021.9.peg.4 82 LLSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFPFIGGYGIATAEVSWVWVNTICLAVALLKRRQIDLPFQTIYR 161 (235)
Q Consensus 82 ~l~~il~~~~ya~~~~~~p~~~~~i~~iini~l~~~li~~~g~~G~a~at~is~~v~~~il~~~l~k~~~~~~~~~~~~~ 161 (235)
++.++++|.|||+||||+|+++++++.++|+++|+.+++++|+.|+|+||+++.+++++++++.++||.+....++..+.
T Consensus 336 ~l~~il~r~fyA~~dtktP~~~s~i~~~~ni~l~~~l~~~~g~~GlAlatsis~~v~~~ll~~~l~k~~~~~~~~~~~~~ 415 (452)
T pfam03023 336 ALVKLLSRVFYAREDTKTPFKISLISAVLNILLSLLLLPPLGVVGLALATSLSAWINLVFLYYILRKRLGGHSLRGWKTF 415 (452)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 99999998858657858899999999999999999999999999999999999999999999999986587760599999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999999999864320221
Q 537021.9.peg.4 162 ILSIFISSGLMGMFIVFFKPCLFNQLSAE 190 (235)
Q Consensus 162 ~~k~~~as~im~~~~~~~~~~~~~~~~~~ 190 (235)
..|+.+++.+|++++|+.+......+..+
T Consensus 416 ~~k~~~as~~m~~~~~~~~~~~~~~~~~g 444 (452)
T pfam03023 416 LASLVVPTALMGGVILLLSSLTQGLWVVG 444 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999999860254413
No 2
>TIGR01695 mviN integral membrane protein MviN; InterPro: IPR004268 The sequencing of a number of pathogenic bacterial genomes has led to novel virulence proteins being discovered that are yet to be biochemically characterised. One example is the MviN family of proteins, first described in Salmonella , and conserved across a wide variety of pathogens in both animals and plants. Further work on these proteins of as yet unknown function has revealed they are integral membrane molecules, and are part of an operon essential in at least one species . ; GO: 0009405 pathogenesis, 0016021 integral to membrane.
Probab=100.00 E-value=0 Score=263.44 Aligned_cols=225 Identities=29% Similarity=0.420 Sum_probs=204.0
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 90267799889962978999999999999999999999999999889999999707898889987777789999999999
Q 537021.9.peg.4 1 MAALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVG 80 (235)
Q Consensus 1 ~~allP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~ 80 (235)
.+|++|++||+..+||++|+++.+++++|.++++++|.++++.++|+||++++|+||+||++|+.+|+.+|.+|++|++|
T Consensus 304 ~~v~lP~~s~~~~~~~~~~~~~~~~~~i~~~~~l~~P~s~~l~~ls~~I~~llf~~g~F~~~~~~~ta~~L~~y~lGl~~ 383 (538)
T TIGR01695 304 ATVLLPKLSKHASEGNWNELEELLNQGIRLTLLLTIPSSFGLLVLSEPIVSLLFERGAFSEEDALMTATILAAYALGLIF 383 (538)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999988502686899999999999999999999999999889999988537888888999999999999998999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 96553445778776654334578899998886432----45531012102313102799999999999999711366668
Q 537021.9.peg.4 81 FLLSRVLLSEFYARNDVKTPAKFYILSIVMGFVIA----IGLFPFIGGYGIATAEVSWVWVNTICLAVALLKRRQIDLPF 156 (235)
Q Consensus 81 ~~l~~il~~~~ya~~~~~~p~~~~~i~~iini~l~----~~li~~~g~~G~a~at~is~~v~~~il~~~l~k~~~~~~~~ 156 (235)
+++++++.|.|||++|+|||++++.++.++|+.++ ..+++.+|..|++.|++++.+++..++++.++||.......
T Consensus 384 ~~l~~vL~~~fYA~~d~~tP~~~~~~~~~~n~~l~GlCy~~l~~~l~~~G~a~a~~~~~~~~~~~l~~~l~~~~~~~~~~ 463 (538)
T TIGR01695 384 YSLQKVLLRAFYARKDTKTPFIVSVISVVLNVLLSGLCYLLLIFPLGLSGIALATSLAAIVSAVLLYLRLKKRLKGILDI 463 (538)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 99999998778755302048999999999999998899998888873689999999999999999999986520477613
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999999---999999999999864320221-05999999999999999999999999986676899
Q 537021.9.peg.4 157 QTIYRILSIFISS---GLMGMFIVFFKPCLFNQLSAE-TAFSPFKNLAIILSGAVLVYLCSISLLLGKGFLAS 225 (235)
Q Consensus 157 ~~~~~~~k~~~as---~im~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~ 225 (235)
+...++.|...++ .+|+.+++.........+... ........+.....++..+|++...+.+.++....
T Consensus 464 ~~~~~l~~~v~as~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~i~~~~y~~~~~~~~~~~~~~~ 536 (538)
T TIGR01695 464 GVLKKLLKLVIASILAAIIGVVLYLLVSVLAWSLGGKKFLVKNLLGLLALGLIGLLVYFLALALLKIEELELL 536 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5789999999999999999999999988652033443124566899999999999999999999629999874
No 3
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=0 Score=260.74 Aligned_cols=216 Identities=29% Similarity=0.405 Sum_probs=189.9
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02677998899629789999999999999999999999999998899999997078988899877777899999999999
Q 537021.9.peg.4 2 AALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGF 81 (235)
Q Consensus 2 ~allP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~ 81 (235)
+|++|++||+.+++|++++++.+++++|+++++++|+++++.++++|+++++|+||+|+++|+.+|+.+|.+|++|++++
T Consensus 290 tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~ 369 (518)
T COG0728 290 TVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPF 369 (518)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99879999975067659899999999999999999999999998999999995358998577999999999998744899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 65534457787766543345788999988864324553101210231310279999999999999971136666889999
Q 537021.9.peg.4 82 LLSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFPFIGGYGIATAEVSWVWVNTICLAVALLKRRQIDLPFQTIYR 161 (235)
Q Consensus 82 ~l~~il~~~~ya~~~~~~p~~~~~i~~iini~l~~~li~~~g~~G~a~at~is~~v~~~il~~~l~k~~~~~~~~~~~~~ 161 (235)
++.+++.|.|||+||+|||+++++++.++|+++|..+.+.+|+.|+|.|+++++|+++.++++.++||........+...
T Consensus 370 ~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~l~~~l~~~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~~~~~~~~ 449 (518)
T COG0728 370 ALVKLLSRVFYAREDTKTPMKIAIISLVVNILLNLLLIPPLGHVGLALATSLAAWVNALLLYYLLRKRLVYLPGRGWGLF 449 (518)
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 99999999999803877376999999999999999978613522999999999999999999999984377862003599
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -99999999999999999999864-320221059999999999999999999999999
Q 537021.9.peg.4 162 -ILSIFISSGLMGMFIVFFKPCLF-NQLSAETAFSPFKNLAIILSGAVLVYLCSISLL 217 (235)
Q Consensus 162 -~~k~~~as~im~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~ 217 (235)
..|..+++++|+.+.+...+... .+............+......+..+|+......
T Consensus 450 ~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 507 (518)
T COG0728 450 LILKLLLASAIMAAALLALLHLAQREWLLGGLLLIRLGVLLLLVLLGAGVYFAMLLLL 507 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999868899999999999999999999999998
No 4
>PRK10459 colanic acid exporter; Provisional
Probab=99.95 E-value=2.1e-25 Score=144.26 Aligned_cols=219 Identities=13% Similarity=0.026 Sum_probs=185.9
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02677998899629789999999999999999999999999998899999997078988899877777899999999999
Q 537021.9.peg.4 2 AALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGF 81 (235)
Q Consensus 2 ~allP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~ 81 (235)
.|++|.+||. ++|+++.++...+++++..+++.|..+|+.++++|++.++|+. .-......++++++.-.+.
T Consensus 266 ~V~~P~~s~~--q~d~~~l~~~~~~~~~~~~~i~~P~~~gla~~A~~~V~llfG~------kW~~av~~l~iL~l~~~~~ 337 (492)
T PRK10459 266 RVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGE------KWNSAIPVLQLLCIVGLLR 337 (492)
T ss_pred HHHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHHHHH
T ss_conf 7799999998--3568999999999999999999999999999879999996072------0776899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 65534457787766543345788999988864324553101210231310279999999999999971136666889999
Q 537021.9.peg.4 82 LLSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFPFIGGYGIATAEVSWVWVNTICLAVALLKRRQIDLPFQTIYR 161 (235)
Q Consensus 82 ~l~~il~~~~ya~~~~~~p~~~~~i~~iini~l~~~li~~~g~~G~a~at~is~~v~~~il~~~l~k~~~~~~~~~~~~~ 161 (235)
+......+.+.|.|+++..++.+++...+++...+...+.+|..|.+++.++++.++.+..++++.|+......++..+.
T Consensus 338 ~~~~~~~~ll~a~Gr~~~~~~~~~~~~~i~~~~i~~~~~~~G~~gva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (492)
T PRK10459 338 SVGNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIVIGGQLAGLIGVALGFLLVSIINTILGYFLMIKPVLGSSYRQYILS 417 (492)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 99999999998559744699999999999999999999871599999999999999999999999999957459999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999999999999986432022105999999999999999999999999986676899999730589
Q 537021.9.peg.4 162 ILSIFISSGLMGMFIVFFKPCLFNQLSAETAFSPFKNLAIILSGAVLVYLCSISLLLGKGFLASLKYSLKTDK 234 (235)
Q Consensus 162 ~~k~~~as~im~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~r~~~ 234 (235)
..+.+.++..|..+.+......... ......+...+..|+.+|...+.+.+.+.+.+..+..+|++|
T Consensus 418 ~~~~~~~~~~m~~~~~~~~~~~~~~------~~~~~~l~~~v~~g~~~y~~~~~~~~~~~~~e~~~~f~~~~~ 484 (492)
T PRK10459 418 LWLPFYLSLPTLVVSYGLGILLKGQ------LALVMLLAVQVAVGVLAFLLMIVLSRHALVVEVKRQFCRSEK 484 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999985254------208999999999999999999999531999999999987755
No 5
>TIGR00797 matE MATE efflux family protein; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transporter activity, 0015297 antiporter activity, 0006855 multidrug transport, 0016020 membrane.
Probab=99.94 E-value=1e-23 Score=135.84 Aligned_cols=227 Identities=19% Similarity=0.213 Sum_probs=175.8
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02677998899629789999999999999999999999999998899999997078988899877777899999999999
Q 537021.9.peg.4 2 AALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGF 81 (235)
Q Consensus 2 ~allP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~ 81 (235)
++.-|..||+..++|+++.+...++++-...++++|.++......+|+.+.. + -+++-.+.....+.+..+|.|++
T Consensus 51 ~a~~~~~aq~~Ga~~~~~~~~~~~~~~~la~~lg~~~~~~~~~~~~~l~~~~-~---~~~~~~~~a~~Yl~~~~~g~P~~ 126 (412)
T TIGR00797 51 TATTALVAQAVGAGNRQRLGRQAQQSLLLALLLGLPVLLVGLFFIDPLLSLM-G---ADGEVAELAQEYLRILILGIPAY 126 (412)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C---CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8899999998833248999999999999999999999999998888899841-7---98889998999899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----CCCCHHHHHHHHHHHHHHHHHHHHHHHH---C--
Q ss_conf 655344577877665433457889999888643245531-0-----1210231310279999999999999971---1--
Q 537021.9.peg.4 82 LLSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFP-F-----IGGYGIATAEVSWVWVNTICLAVALLKR---R-- 150 (235)
Q Consensus 82 ~l~~il~~~~ya~~~~~~p~~~~~i~~iini~l~~~li~-~-----~g~~G~a~at~is~~v~~~il~~~l~k~---~-- 150 (235)
.++...++.+.+.+|||+|+++++++.++|+++|++|+. . +|..|+|+||++|.|+.+.++.++.+|. +
T Consensus 127 ~~~~~~~~~l~g~~~t~~p~~~~~~~~~~Ni~L~~~li~G~fG~P~lG~~GaA~At~~s~~~~~~~~~~~~~~~~~~~~~ 206 (412)
T TIGR00797 127 LLSFVLRGFLRGQGDTKTPMYITLIGNLLNIVLDYILIFGKFGFPELGIVGAALATVISYWLMFLLLLYYIKKSAQAKKI 206 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf 99999999974542258999999999999999838987178887124777668999999999999999999971212432
Q ss_pred ------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHCCCCCHHHHHHHHHHHHHHHHHHH-HHHH
Q ss_conf ------3666688999999999999999999999999864---------32022105999999999999999999-9999
Q 537021.9.peg.4 151 ------QIDLPFQTIYRILSIFISSGLMGMFIVFFKPCLF---------NQLSAETAFSPFKNLAIILSGAVLVY-LCSI 214 (235)
Q Consensus 151 ------~~~~~~~~~~~~~k~~~as~im~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~y-~~~~ 214 (235)
..+.+++..++++|....+.++-+........+. ..++.+.....+..+......|.... -...
T Consensus 207 ~~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~~~~~~~~~~~~~~~~G~~~~lA~~~~~~~~~~~~~m~~~G~~~A~~~~v 286 (412)
T TIGR00797 207 GLKWEGLLKPDWEVLKRLLKLGLPIALRVILESLSFALVALLVARLGGSIALAAHQVALNVESLLFMPAFGLGIAVSILV 286 (412)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 12244433025899999998708999999999999999999987316732467789999999999999989999999999
Q ss_pred HHHHHHHHHHHHHHHHCC
Q ss_conf 999866768999997305
Q 537021.9.peg.4 215 SLLLGKGFLASLKYSLKT 232 (235)
Q Consensus 215 ~~~~~~~~~~~l~~~~r~ 232 (235)
..-.|+...+..+...|+
T Consensus 287 G~~lGa~~~~~a~~~~~~ 304 (412)
T TIGR00797 287 GQALGAGDPKRAKEVARV 304 (412)
T ss_pred HHHHCCCCHHHHHHHHHH
T ss_conf 998514687899999999
No 6
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.92 E-value=6.1e-22 Score=127.05 Aligned_cols=226 Identities=19% Similarity=0.188 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 26779988996297899999999999999999999999999988999999970789888998777778999999999996
Q 537021.9.peg.4 3 ALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGFL 82 (235)
Q Consensus 3 allP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~~ 82 (235)
+.-+..||+..+||+++.++..++++-....++++..+.....++|+.+.+-. +++-.+.....+.+...+.|++.
T Consensus 75 g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~----~~~v~~~a~~Yl~i~~~~~~~~~ 150 (455)
T COG0534 75 GTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGA----PAEVLELAAEYLRIILLGAPFAL 150 (455)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999974998899999999999999999999999999969999998599----76799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-------
Q ss_conf 553445778776654334578899998886432455310----121023131027999999999999997113-------
Q 537021.9.peg.4 83 LSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFPF----IGGYGIATAEVSWVWVNTICLAVALLKRRQ------- 151 (235)
Q Consensus 83 l~~il~~~~ya~~~~~~p~~~~~i~~iini~l~~~li~~----~g~~G~a~at~is~~v~~~il~~~l~k~~~------- 151 (235)
+...+.+.+.+.||+|+|++.++++.++|+++|++|+.. +|+.|+|+||.++.++.+.++.+++.|+++
T Consensus 151 ~~~~~~~~lr~~G~~~~~m~~~~~~~~lNi~Ln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~ 230 (455)
T COG0534 151 LSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKK 230 (455)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 99999999985899148799999999999999799999513121222099999999999999999999963430035542
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q ss_conf --6666889999999999999999999999998643--------20221059999999999999999999-999999866
Q 537021.9.peg.4 152 --IDLPFQTIYRILSIFISSGLMGMFIVFFKPCLFN--------QLSAETAFSPFKNLAIILSGAVLVYL-CSISLLLGK 220 (235)
Q Consensus 152 --~~~~~~~~~~~~k~~~as~im~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~y~-~~~~~~~~~ 220 (235)
.+++++..++..|...++.++-............ ..+.......+..+......|...-. .....-.|.
T Consensus 231 ~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga 310 (455)
T COG0534 231 KLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGA 310 (455)
T ss_pred HCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 01479999999999966469999999999999999999975989999999999999999999999999999999998779
Q ss_pred HHHHHHHHHHCC
Q ss_conf 768999997305
Q 537021.9.peg.4 221 GFLASLKYSLKT 232 (235)
Q Consensus 221 ~~~~~l~~~~r~ 232 (235)
...+..|+..|+
T Consensus 311 ~~~~~a~~~~~~ 322 (455)
T COG0534 311 GNYKRARRAARL 322 (455)
T ss_pred CCHHHHHHHHHH
T ss_conf 999999999999
No 7
>PRK10189 hypothetical protein; Provisional
Probab=99.92 E-value=8.2e-22 Score=126.42 Aligned_cols=170 Identities=12% Similarity=0.160 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 26779988996297899999999999999999999999999988999999970789888998777778999999999996
Q 537021.9.peg.4 3 ALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGFL 82 (235)
Q Consensus 3 allP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~~ 82 (235)
..-+.+||+..+||+++.++...+++.+...+++|.++.+..++++++.++- ++-|++-.......+.+...++|+..
T Consensus 90 g~~~lvaq~~Ga~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~il~l~~--~~~~~~v~~~a~~Yl~i~~~~~p~~~ 167 (481)
T PRK10189 90 GTTVVVAFSLGKRDRRRARVAARQSLVIMTLFAVLLAVLIHFFGEQIIDFVA--GQATPEVKALALTYLELTVLSYPAAA 167 (481)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999987399988799999999999999999999999999999999875--79988999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------
Q ss_conf 55344577877665433457889999888643245531------01210231310279999999999999971-------
Q 537021.9.peg.4 83 LSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFP------FIGGYGIATAEVSWVWVNTICLAVALLKR------- 149 (235)
Q Consensus 83 l~~il~~~~ya~~~~~~p~~~~~i~~iini~l~~~li~------~~g~~G~a~at~is~~v~~~il~~~l~k~------- 149 (235)
+.......+++.+|+|+|+++++++.++|+++|++|+. .+|+.|+|+||++|.++......+.+.++
T Consensus 168 ~~~~~~~~lrg~G~tk~pm~i~~~~~ilNivln~ilIfG~~g~P~lGv~GAAiAT~is~~i~~~~~~~~l~~~~~~~~~~ 247 (481)
T PRK10189 168 ITLIGSGALRGAGNTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAILWVLMIGFNPALRI 247 (481)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCC
T ss_conf 99999999987788288999999999999999999860247884003899999999999999999999999965743110
Q ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf ----1366668899999999999999999
Q 537021.9.peg.4 150 ----RQIDLPFQTIYRILSIFISSGLMGM 174 (235)
Q Consensus 150 ----~~~~~~~~~~~~~~k~~~as~im~~ 174 (235)
...+.+++..++.+|+.+++.+...
T Consensus 248 ~~~~~~~~~~~~~~~~il~iG~P~~~~~~ 276 (481)
T PRK10189 248 PLKSYFKPLNFSIIWEVMGIGIPASVESV 276 (481)
T ss_pred CHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 18765066899999999997389999999
No 8
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.92 E-value=8.5e-22 Score=126.33 Aligned_cols=223 Identities=14% Similarity=0.099 Sum_probs=162.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79988996297899999999999999999999999999988999999970789888998777778999999999996553
Q 537021.9.peg.4 6 PKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGFLLSR 85 (235)
Q Consensus 6 P~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~~l~~ 85 (235)
..+||+..+||+|+.++..++++.+...+++..++....+++|+.+.+ +. +++-.+.....+.++..+.|+..+..
T Consensus 77 ~lis~~~G~~~~~~a~~~~~~~~~~~~~~~~i~~~~~~~~~~~il~~l-ga---~~~v~~~a~~Yl~i~~~g~~~~~~~~ 152 (456)
T PRK09575 77 SLLSIYRGEGDLQKAKTILTTGLLLLLLLGPIVSIILWLFADDFLLAQ-GA---EGRTLELGLQYIQVLTWGCLFTIGAI 152 (456)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999769999999999999999999999999999999999999883-97---89999999999999999889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCC
Q ss_conf 44577877665433457889999888643245531--012102313102799999999999999711--------36666
Q 537021.9.peg.4 86 VLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFP--FIGGYGIATAEVSWVWVNTICLAVALLKRR--------QIDLP 155 (235)
Q Consensus 86 il~~~~ya~~~~~~p~~~~~i~~iini~l~~~li~--~~g~~G~a~at~is~~v~~~il~~~l~k~~--------~~~~~ 155 (235)
.+...+++.+|+|+|++..+++.++|+++|++++. .+|+.|+|+||++|..+.+++..+++.+++ ..+++
T Consensus 153 ~~~~~lra~G~~~~~~~~~i~~~i~NiiLd~lfI~~~~lGv~GAAlATvisq~i~~~~~l~~~~~~~~~l~~~~~~~~~~ 232 (456)
T PRK09575 153 ALPMLVRNDESPNLATGLMVLGALINIVLDYLFIGVLDWGLTGAAIATALAQLVVTILGLGYFFSSRANIKLSLKELLFN 232 (456)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCC
T ss_conf 99999982899830589999977889989999972089986449999999999999999999990686147537631156
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-----CCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_conf 889999999999999999999999998----6432-----02210599999999999999999-9999999986676899
Q 537021.9.peg.4 156 FQTIYRILSIFISSGLMGMFIVFFKPC----LFNQ-----LSAETAFSPFKNLAIILSGAVLV-YLCSISLLLGKGFLAS 225 (235)
Q Consensus 156 ~~~~~~~~k~~~as~im~~~~~~~~~~----~~~~-----~~~~~~~~~~~~l~~~~~~~~~~-y~~~~~~~~~~~~~~~ 225 (235)
++..++..++..++.++.......... ...+ .+..........+......|... .-.......|.+..++
T Consensus 233 ~~~~~~i~~iG~p~~i~~~~~s~~~~~~n~~~~~~g~~~~vAa~~i~~~i~~~~~~~~~Gl~~a~~~lvg~n~GA~~~~r 312 (456)
T PRK09575 233 WSLAPQIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSSLTVGAFAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDN 312 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99999999984799999999999999999999997769999999999999999999999998878999999856998899
Q ss_pred HHHHHCC
Q ss_conf 9997305
Q 537021.9.peg.4 226 LKYSLKT 232 (235)
Q Consensus 226 l~~~~r~ 232 (235)
.|+..|+
T Consensus 313 v~~~~~~ 319 (456)
T PRK09575 313 IKKLLKL 319 (456)
T ss_pred HHHHHHH
T ss_conf 9999999
No 9
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.91 E-value=2.1e-21 Score=124.42 Aligned_cols=167 Identities=17% Similarity=0.238 Sum_probs=143.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67799889962978999999999999999999999999999889999999707898889987777789999999999965
Q 537021.9.peg.4 4 LLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGFLL 83 (235)
Q Consensus 4 llP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~~l 83 (235)
.-+..||+..+||+++.++...+++-+...+++|.++.....++|+...+ + -|++-.+.....+.+..+++|+..+
T Consensus 68 ~~~lvsq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~-g---~~~~v~~~a~~Yl~i~~~~~~~~~~ 143 (452)
T PRK01766 68 LTPIVAQLNGAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMM-N---LEPDVADIAVGYLHALLWGIPAYLL 143 (452)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C---CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999789988999999999999999999999999999999999981-9---8299999999999999987899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC------
Q ss_conf 5344577877665433457889999888643245531------0121023131027999999999999997113------
Q 537021.9.peg.4 84 SRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFP------FIGGYGIATAEVSWVWVNTICLAVALLKRRQ------ 151 (235)
Q Consensus 84 ~~il~~~~ya~~~~~~p~~~~~i~~iini~l~~~li~------~~g~~G~a~at~is~~v~~~il~~~l~k~~~------ 151 (235)
...++..+.+.+|+|+|++.++++.++|+++|+.|+. .+|+.|+|+||+++.++.+.+..+++.+++.
T Consensus 144 ~~~~~~~l~~~g~t~~~m~~~~~~~ilNi~l~~~lIfG~~g~p~lGv~GaA~At~is~~~~~~~~~~~~~~~~~~~~~~~ 223 (452)
T PRK01766 144 YQVLRSFIDGLGKTKPTMVIGFLGLLVNIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRL 223 (452)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 99999998847984999999999999999888898760357630068899999999999999999999998455002000
Q ss_pred ----CCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf ----66668899999999999999999
Q 537021.9.peg.4 152 ----IDLPFQTIYRILSIFISSGLMGM 174 (235)
Q Consensus 152 ----~~~~~~~~~~~~k~~~as~im~~ 174 (235)
.+++++..+++.|..+++.++..
T Consensus 224 ~~~~~~~~~~~~~~i~~ig~P~~~~~~ 250 (452)
T PRK01766 224 FKGLYKPDWAVIKRLLKLGLPIGLAIF 250 (452)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 021032349999999997328999999
No 10
>TIGR02900 spore_V_B stage V sporulation protein B; InterPro: IPR014249 This entry represents SpoVB, which is the stage V sporulation protein B of the bacterial endospore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with high sequence similarity to SpoVB exist, such as YkvU from B. subtilis and a number Clostridium proteins, but they are excluded from this entry. .
Probab=99.91 E-value=8.4e-22 Score=126.36 Aligned_cols=195 Identities=19% Similarity=0.283 Sum_probs=155.7
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02677998899629789999999999999999999999999998899999997-07898889987777789999999999
Q 537021.9.peg.4 2 AALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLY-ERGAFTAQDTILVSSYLSIYSTEIVG 80 (235)
Q Consensus 2 ~allP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf-~~G~f~~~~~~~~~~~L~~~~~~l~~ 80 (235)
|++.|++||+.++||+...+++++|++|++++.+.|.++.+.+.++|+.+++| +| +..+..++..+++.|+
T Consensus 294 T~LvP~iSEa~~kk~y~~~~~Ri~qa~risll~G~~~~~I~l~~p~~l~~L~yP~~--------~~~g~fi~~~a~~~pf 365 (493)
T TIGR02900 294 TALVPDISEAMAKKNYSLVEKRINQALRISLLLGLITTVILLVIPDELGKLFYPGR--------PDAGNFIRVLAPSFPF 365 (493)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--------CCHHHHHHHHHHHHHH
T ss_conf 98778899875535468999999999999999999999999997667764158998--------5388899999988999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 965534457787766543345788999988864324553--101210231310279999999999999971136666889
Q 537021.9.peg.4 81 FLLSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLF--PFIGGYGIATAEVSWVWVNTICLAVALLKRRQIDLPFQT 158 (235)
Q Consensus 81 ~~l~~il~~~~ya~~~~~~p~~~~~i~~iini~l~~~li--~~~g~~G~a~at~is~~v~~~il~~~l~k~~~~~~~~~~ 158 (235)
.-.+..++..++|.|++|.++++++++.++++.+=+.|. |.+|..|.|+|-.+......++.+..++|+.....+...
T Consensus 366 ~Y~~~~~~siL~gLg~~~~~l~NSlI~~iv~~~~lf~Lt~~P~i~I~G~a~~~~~~~~l~~~Ln~~~~~K~~~i~i~~~~ 445 (493)
T TIGR02900 366 LYLSAPLQSILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYALTIIITSVLVLVLNLAEIKKNIRITIDLSE 445 (493)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECHHH
T ss_conf 99889999999731544699999999999999999999853046789999999999999999869987655221511567
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999-9999999999998643202210599999999999999999999
Q 537021.9.peg.4 159 IYRILSIFISS-GLMGMFIVFFKPCLFNQLSAETAFSPFKNLAIILSGAVLVYLC 212 (235)
Q Consensus 159 ~~~~~k~~~as-~im~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~ 212 (235)
+ ..|+.... ++.+.......... .. ...........+..+..+|..
T Consensus 446 ~--v~kP~~~l~~~l~~~~l~~~~~~----~~--~~~~~~~~~~~i~~~~~~Y~~ 492 (493)
T TIGR02900 446 F--VLKPIFALLGILVYLILSLLKYI----IF--NVNILINLLLIIILGFSIYIL 492 (493)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHH----HC--CHHHHHHHHHHHHHHHHHHHH
T ss_conf 6--87379999999999999988874----04--534679999999999999982
No 11
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.90 E-value=1.8e-20 Score=119.74 Aligned_cols=141 Identities=13% Similarity=0.056 Sum_probs=127.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77998899629789999999999999999999999999998899999997078988899877777899999999999655
Q 537021.9.peg.4 5 LPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGFLLS 84 (235)
Q Consensus 5 lP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~~l~ 84 (235)
=+..||+..+||+++.++...+++-+...++++.++....+.+|+...+ + -+++-.+.....+.+...|+|+...+
T Consensus 70 ~~lvAq~~Ga~~~~~~~~~~~~~l~l~~~~g~~~~~~~~~~~~~~l~~~-g---~~~~v~~~a~~Yl~i~~~g~p~~~~~ 145 (439)
T PRK10367 70 TGLTAQAYGAKNPQALARALVQPLLLALGAGALIALLRTPIIDLALHIV-G---GSEAVLEQARRFLEIRWLSAPASLAN 145 (439)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999808999999999999999999999999999999999999980-9---98666999999999999998999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 344577877665433457889999888643245531--01210231310279999999999999971
Q 537021.9.peg.4 85 RVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFP--FIGGYGIATAEVSWVWVNTICLAVALLKR 149 (235)
Q Consensus 85 ~il~~~~ya~~~~~~p~~~~~i~~iini~l~~~li~--~~g~~G~a~at~is~~v~~~il~~~l~k~ 149 (235)
...+..+.+.+|+|+|+++.+++.++|+++|++++. .+|+.|+|+||++|+++.+.+..+..+|+
T Consensus 146 ~~~~~~lrg~g~t~~pm~~~~~~~vlNiiLd~~fI~g~~lGv~GAA~AT~is~~~~~~~~l~~~~~~ 212 (439)
T PRK10367 146 LVLLGWLLGVQYARAPVILLVVGNILNIVLDVWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKV 212 (439)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999877870889999999999999999999987076328999999999999999999999998
No 12
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.88 E-value=3.8e-19 Score=113.15 Aligned_cols=225 Identities=11% Similarity=0.066 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 26779988996297899999999999999999999999999988999999970789888998777778999999999996
Q 537021.9.peg.4 3 ALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGFL 82 (235)
Q Consensus 3 allP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~~ 82 (235)
+.-|..||+..+||.++.++..++++-....++++.++.+. ..+|+... ++ -+++..+.....+.+..+++|++.
T Consensus 68 g~~~lvaq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~il~~-~g---~~~~~~~~a~~Yl~i~~~~~~~~~ 142 (462)
T PRK00187 68 AVGTLVAIRHGAGDIEGATRLAQSGLWLAWLLALVAALLLW-NLEPLLLL-FG---QAPQNVDAAMQFLHLLPFALPGYL 142 (462)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HC---CCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999977999898999999999999999999999999-99999998-69---899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HCCCCHHHHHHHHHHHHHHHHHHHHHHHHC------
Q ss_conf 55344577877665433457889999888643245531------012102313102799999999999999711------
Q 537021.9.peg.4 83 LSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFP------FIGGYGIATAEVSWVWVNTICLAVALLKRR------ 150 (235)
Q Consensus 83 l~~il~~~~ya~~~~~~p~~~~~i~~iini~l~~~li~------~~g~~G~a~at~is~~v~~~il~~~l~k~~------ 150 (235)
....+++.+.+.+|+|+|++.++++.++|+++|+.++. .+|..|+|+||+++.......+..+..+++
T Consensus 143 ~~~~~~~~l~~~g~~~~~~~~~~~~~v~Ni~Ln~~lI~g~~g~p~lGv~Gaa~at~~~~~~~~~~l~~~~~~~~~~~~~~ 222 (462)
T PRK00187 143 SFMALRGFTSALGRAGPVMVISLAGAVANLALNYALIEGWFGLPKLGLMGIGLVTALVSNCMALALALYIRRHPAYAAYP 222 (462)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999986799716999999999999999988861445655321689889999999999999999999905523011
Q ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-----CCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_conf ----366668899999999999999999999999986---432-----02210599999999999999999-99999999
Q 537021.9.peg.4 151 ----QIDLPFQTIYRILSIFISSGLMGMFIVFFKPCL---FNQ-----LSAETAFSPFKNLAIILSGAVLV-YLCSISLL 217 (235)
Q Consensus 151 ----~~~~~~~~~~~~~k~~~as~im~~~~~~~~~~~---~~~-----~~~~~~~~~~~~l~~~~~~~~~~-y~~~~~~~ 217 (235)
..+++++..++++|+.+++.++...-....... ... .+.......+..+......|... --......
T Consensus 223 ~~~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~lG~~alAA~~i~~~i~~l~~~~~~gi~~A~~~~vG~~ 302 (462)
T PRK00187 223 LRKGLSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQAVSVAFMVPVGLSYAVTMRVGQH 302 (462)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 03312457799999999998679999999999999999999856809999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 866768999997305
Q 537021.9.peg.4 218 LGKGFLASLKYSLKT 232 (235)
Q Consensus 218 ~~~~~~~~l~~~~r~ 232 (235)
.|....+..|+..|+
T Consensus 303 lGa~~~~~a~~~~~~ 317 (462)
T PRK00187 303 YGAGRLLEARRAGRV 317 (462)
T ss_pred HCCCCHHHHHHHHHH
T ss_conf 768999999999999
No 13
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.86 E-value=1.8e-18 Score=109.82 Aligned_cols=140 Identities=21% Similarity=0.242 Sum_probs=120.0
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02677998899629789999999999999999999999999998899999997078988899877777899999999999
Q 537021.9.peg.4 2 AALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGF 81 (235)
Q Consensus 2 ~allP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~ 81 (235)
.+++|.+||...++|+++.++..++++++..++.+|+.+++..+++|++.++|+.+. ...+..+..+.++.++.
T Consensus 271 ~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~------~~~~~~l~il~~~~~~~ 344 (480)
T COG2244 271 RVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY------ASAAPILQLLALAGLFL 344 (480)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHH
T ss_conf 999999999876687678999999999999999999999999989999999828630------21699999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6553445778776654334578899998886432455310121023131027999999999999997
Q 537021.9.peg.4 82 LLSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFPFIGGYGIATAEVSWVWVNTICLAVALLK 148 (235)
Q Consensus 82 ~l~~il~~~~ya~~~~~~p~~~~~i~~iini~l~~~li~~~g~~G~a~at~is~~v~~~il~~~l~k 148 (235)
+........+++.++++..++.+.++.++|.++|.+++|.+|..|.+.++ .+.........+...+
T Consensus 345 ~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~~~l~~~li~~~g~~g~~~a~-~~~~~~~~~~~~~~~~ 410 (480)
T COG2244 345 SLVSLTSSLLQALGKQRLLLLISLISALLNLILNLLLIPRFGLIGAAIAT-ASVIALALLLFYILRL 410 (480)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_conf 99999999999836017999999999999999999999886699999999-9999999999999999
No 14
>pfam03023 MVIN MviN-like protein. Deletion of the mviN virulence gene in Salmonella enterica serovar. Typhimurium greatly reduces virulence in a mouse model of typhoid-like disease. Open reading frames encoding homologues of MviN have since been identified in a variety of bacteria, including pathogens and non-pathogens and plant-symbionts. In the nitrogen-fixing symbiont Rhizobium tropici, mviN is required for motility. The MviM protein is predicted to be membrane-associated.
Probab=99.67 E-value=4.6e-13 Score=82.90 Aligned_cols=182 Identities=18% Similarity=0.146 Sum_probs=142.8
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02677998899629789999999999999999999999999998899999997078988899877777899999999999
Q 537021.9.peg.4 2 AALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGF 81 (235)
Q Consensus 2 ~allP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~ 81 (235)
++..|.++|.. ++|+|+.++..++-+.....+....++.....++++++++. . .||+|..+.+....++..+.++++
T Consensus 35 ~afIP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~fap~lv~l~a-~-Gf~~~~~~la~~l~ri~~p~i~f~ 111 (452)
T pfam03023 35 SAFVPVFAELK-QADKDEAAEFVRRVSTLLIGVLLLVTLLGILAAPWVIRLLA-P-GFDAETFSLTVSLLRITFPYLLLV 111 (452)
T ss_pred HHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C-CCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998-53969999999999999999999999999999999999985-8-875468999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHHHHCC-----CC
Q ss_conf 655344577877665433457889999888643245531012---1023131027999999999999997113-----66
Q 537021.9.peg.4 82 LLSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFPFIG---GYGIATAEVSWVWVNTICLAVALLKRRQ-----ID 153 (235)
Q Consensus 82 ~l~~il~~~~ya~~~~~~p~~~~~i~~iini~l~~~li~~~g---~~G~a~at~is~~v~~~il~~~l~k~~~-----~~ 153 (235)
++..+++..++++++-..|....++-.+.-+..-..+.+.+| ..+.++++.++..++..++...++|... .+
T Consensus 112 ~l~a~~~~~Lna~~~F~~~a~~pi~~N~~~I~~ll~~~~~~g~~~i~~la~g~~~G~~~q~l~~~~~l~k~g~~~~~~~~ 191 (452)
T pfam03023 112 SLSAVFGAVLNARKKFFAPAFSPVLLNIGVILTLLFLANYFGREPIYGLAIGVLIGGVLQLLVQLPFLRKAGLLLKPRFN 191 (452)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999998838855578758989999999999999855618999999999999999999999999982996455435
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6688999999999999999999999999864320
Q 537021.9.peg.4 154 LPFQTIYRILSIFISSGLMGMFIVFFKPCLFNQL 187 (235)
Q Consensus 154 ~~~~~~~~~~k~~~as~im~~~~~~~~~~~~~~~ 187 (235)
.+.+..++..|......+... ........+..+
T Consensus 192 ~~~~~lk~~~~l~~P~~l~~~-~~qin~lvd~~~ 224 (452)
T pfam03023 192 FRDKGVKRFLALALPTLLGVS-VSQLNLLIDTAL 224 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_conf 454368899999999999999-999999999999
No 15
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.60 E-value=2.3e-13 Score=84.39 Aligned_cols=143 Identities=13% Similarity=0.062 Sum_probs=124.3
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02677998899629789999999999999999999999999998899999997078988899877777899999999999
Q 537021.9.peg.4 2 AALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGF 81 (235)
Q Consensus 2 ~allP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~ 81 (235)
.+.-|..++.+..||.|+.++....+++....+++..++.+..+++|++++ |. +-|++..+.+...++++..+.++.
T Consensus 295 ~a~~~lvg~n~GA~~~~rv~~~~~~~~~~~~~~~~~~~~l~~~f~~~l~~l-F~--~~d~~vi~~~~~~l~i~~~~~~~~ 371 (456)
T PRK09575 295 EGMQPPVSYYFGARQYDNIKKLLKLAMKVSVIAGIAWVLLLNLFPETMVSL-FN--SGDPELIAETIVGIRLHLFAMFLD 371 (456)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HC--CCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 878999999856998899999999999999999999999999999999987-56--998899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 655344577877665433457889999888643245531012102313102799999999999999
Q 537021.9.peg.4 82 LLSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFPFIGGYGIATAEVSWVWVNTICLAVALL 147 (235)
Q Consensus 82 ~l~~il~~~~ya~~~~~~p~~~~~i~~iini~l~~~li~~~g~~G~a~at~is~~v~~~il~~~l~ 147 (235)
+...+.+..+++.+|++.++..++....+-+.+.+++...+|..|+=+|..+++...+++...+++
T Consensus 372 g~~~v~~~~f~a~g~~~~~~~~sl~~~~i~lp~~~il~~~~G~~GiW~a~~is~~~~~~~~~~~~~ 437 (456)
T PRK09575 372 GFLVLASAYFMAVNQGGKALFISIGNMLIQLPFLFILPKWLGIDGVWLAMPLSNIALSLVVAPMLW 437 (456)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999988799499999999999999999999999981759999999999999999999999
No 16
>pfam01554 MatE MatE. The MatE domain
Probab=99.55 E-value=3.5e-13 Score=83.51 Aligned_cols=112 Identities=18% Similarity=0.272 Sum_probs=104.1
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02677998899629789999999999999999999999999998899999997078988899877777899999999999
Q 537021.9.peg.4 2 AALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGF 81 (235)
Q Consensus 2 ~allP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~ 81 (235)
++.-|..||+..+||+++.++..++++.....++++.++.+..+++++.+. |+. |++-.+.....+.+.+++.|+.
T Consensus 50 ~a~~~~vs~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~---~~~v~~~a~~yl~~~~~~~~~~ 125 (161)
T pfam01554 50 TALTTLVGQALGAGNFKRAGVALRQGLILSLLISLPIALLIILFREPILSL-FTQ---DEEVLELASKYLRILALGIPFL 125 (161)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCC---CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999868875999999999999999999999999999889999999-797---8999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 655344577877665433457889999888643245
Q 537021.9.peg.4 82 LLSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIG 117 (235)
Q Consensus 82 ~l~~il~~~~ya~~~~~~p~~~~~i~~iini~l~~~ 117 (235)
.........+++.+|+|.|++.++++.++|+++|++
T Consensus 126 ~~~~~~~~~l~~~g~~~~~~~~~i~~~~~ni~l~yl 161 (161)
T pfam01554 126 SLQFVLSGFLRGAGDTKPPLYINLISLLLNIPLNYL 161 (161)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999988996599999999999999998429
No 17
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.50 E-value=6.5e-12 Score=77.19 Aligned_cols=145 Identities=14% Similarity=0.116 Sum_probs=128.1
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02677998899629789999999999999999999999999998899999997078988899877777899999999999
Q 537021.9.peg.4 2 AALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGF 81 (235)
Q Consensus 2 ~allP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~ 81 (235)
.+.-|..+++..+||.++.++....++.....++...+..+..+++|+.+ +|-. |++-.......+.+.++..++.
T Consensus 293 ~a~~~~vg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-lft~---d~~v~~~~~~~l~~~~~~~~~~ 368 (452)
T PRK01766 293 MALTIRVGFELGAGRYLDARQAAYIGLAVGLAMALLTAILLVLFREQIAL-LYTD---DPEVIALASHLLLFAALFQFSD 368 (452)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCC---CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88989999997499999999999999999999999999999997787877-4599---8999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 655344577877665433457889999-888643245531--012102313102799999999999999711
Q 537021.9.peg.4 82 LLSRVLLSEFYARNDVKTPAKFYILSI-VMGFVIAIGLFP--FIGGYGIATAEVSWVWVNTICLAVALLKRR 150 (235)
Q Consensus 82 ~l~~il~~~~ya~~~~~~p~~~~~i~~-iini~l~~~li~--~~g~~G~a~at~is~~v~~~il~~~l~k~~ 150 (235)
+.+.+....+.+.+|+|.|++.++++. ++.+.+.+++.. .+|..|+=++..++..+..++++++++|..
T Consensus 369 ~~~~v~~g~lrg~G~t~~~~~~~~~~~w~i~iPl~~ll~~~~~~G~~GiW~~~~~~~~~~~~~~~~r~r~~~ 440 (452)
T PRK01766 369 AIQVIGSGALRGYKDTRVIFFITFIAYWVIGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQ 440 (452)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999895564599999999999999999999999986687578999999999999999999999987
No 18
>PRK10189 hypothetical protein; Provisional
Probab=99.42 E-value=4.4e-11 Score=73.09 Aligned_cols=144 Identities=12% Similarity=-0.035 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 26779988996297899999999999999999999999999988999999970789888998777778999999999996
Q 537021.9.peg.4 3 ALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGFL 82 (235)
Q Consensus 3 allP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~~ 82 (235)
|.-+...++..+||.++.++...+++.....++...++.+..+++++.. +|.+ |+|-.+.....+.+.++..++.+
T Consensus 320 A~~~~VGq~lGa~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~-lft~---d~ev~~~~~~~l~i~a~~~~~~~ 395 (481)
T PRK10189 320 ASTIITGRRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLTAPFAGFMAS-FYTQ---DPQVKHVVKILIWLNALFMPIWA 395 (481)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCC---CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999997799899999999999999999999999999999999998-8499---89999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 55344577877665433457889999-88864324553--1012102313102799999999999999711
Q 537021.9.peg.4 83 LSRVLLSEFYARNDVKTPAKFYILSI-VMGFVIAIGLF--PFIGGYGIATAEVSWVWVNTICLAVALLKRR 150 (235)
Q Consensus 83 l~~il~~~~ya~~~~~~p~~~~~i~~-iini~l~~~li--~~~g~~G~a~at~is~~v~~~il~~~l~k~~ 150 (235)
.+.++...+.+.+|+|.|+..++++. ++-+.+.+++. ..+|..|+=++..+...+..++.+++.++.+
T Consensus 396 ~~~v~~g~LrG~Gdt~~~~~i~~i~~w~v~ipl~y~l~~~~~~G~~GiW~~~~~~~~v~~vl~~~r~~~g~ 466 (481)
T PRK10189 396 ASWVLPAGFKGARDARYAMWVSMLGMWGCRVVAGYVLGIMLGWGVVGVWMGMFLDWAVRGVLFYWRMVTGR 466 (481)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999763462299999999999999999999999984798999336699999999999999994796
No 19
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.37 E-value=1.5e-10 Score=70.39 Aligned_cols=145 Identities=19% Similarity=0.116 Sum_probs=126.7
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02677998899629789999999999999999999999999998899999997078988899877777899999999999
Q 537021.9.peg.4 2 AALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGF 81 (235)
Q Consensus 2 ~allP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~ 81 (235)
.+.=|..++...+||.|+.++....++.....++.-....+..+++|+++++.. |++-.+.....+.+.++..++.
T Consensus 298 ~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~lf~~----~~~v~~~~~~~l~i~~~~~~~~ 373 (455)
T COG0534 298 QAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTT----DPEVIALAVILLLIAALFQPFD 373 (455)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999877999999999999999999999999999999989999999789----4999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 65534457787766543345788999988-86432455310-12102313102799999999999999711
Q 537021.9.peg.4 82 LLSRVLLSEFYARNDVKTPAKFYILSIVM-GFVIAIGLFPF-IGGYGIATAEVSWVWVNTICLAVALLKRR 150 (235)
Q Consensus 82 ~l~~il~~~~ya~~~~~~p~~~~~i~~ii-ni~l~~~li~~-~g~~G~a~at~is~~v~~~il~~~l~k~~ 150 (235)
..+.+....+++.+|+|.|+..++++... -+.+.+++.+. +|..|.=++...++.+..+...++.+++.
T Consensus 374 ~~~~~~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~ 444 (455)
T COG0534 374 GIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFFLGLAGVWIGFPLSLILRAILLLLRLRRGR 444 (455)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999975258719989999999999999999999888417427669999999999999999999998
No 20
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.34 E-value=2.5e-10 Score=69.30 Aligned_cols=146 Identities=14% Similarity=0.064 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2677998899629789999999999999999999999999998899999997078-988899877777899999999999
Q 537021.9.peg.4 3 ALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERG-AFTAQDTILVSSYLSIYSTEIVGF 81 (235)
Q Consensus 3 allP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G-~f~~~~~~~~~~~L~~~~~~l~~~ 81 (235)
+.-+..+++..+||.|+.++....++.+...++.-+++.+..+++|+..+.-..+ .-+.|-.+.....+.+.+...++.
T Consensus 294 A~~~~vG~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~lFt~~~d~~~~evi~l~~~~l~i~~~~~~~~ 373 (462)
T PRK00187 294 AVTMRVGQHYGAGRLLEARRAGRVGIGFGAVAMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFD 373 (462)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999876899999999999999999999999999999999999998628898523999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 655344577877665433457889999-8886432455310--121023131027999999999999997
Q 537021.9.peg.4 82 LLSRVLLSEFYARNDVKTPAKFYILSI-VMGFVIAIGLFPF--IGGYGIATAEVSWVWVNTICLAVALLK 148 (235)
Q Consensus 82 ~l~~il~~~~ya~~~~~~p~~~~~i~~-iini~l~~~li~~--~g~~G~a~at~is~~v~~~il~~~l~k 148 (235)
+.+.+....+++.+|+|.|++.++++. ++.+.+.+.+... +|..|+=++..++..+..+++....+.
T Consensus 374 ~~~~v~~g~lrg~G~~~~~~~~~~i~~w~v~vPla~~l~~~~~~G~~GiW~g~~i~~~~~~i~~~~~~~w 443 (462)
T PRK00187 374 GTQTIAMGAIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (462)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999982743999999999999999999999999857992336898999999999999999999
No 21
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.14 E-value=1.6e-07 Score=55.41 Aligned_cols=182 Identities=16% Similarity=0.116 Sum_probs=134.6
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02677998899629789999999999999999999999999998899999997078988899877777899999999999
Q 537021.9.peg.4 2 AALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGF 81 (235)
Q Consensus 2 ~allP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~ 81 (235)
.+-.|.++|+..++++|+.++-.+...-....+.+-.++.....++.+++.+++.|- ++++-..+....++..+-+++.
T Consensus 68 ~aFVPv~~~~~~~~~~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~-~~~~~~~a~~l~~i~~Pyl~~i 146 (518)
T COG0728 68 SAFVPVLAEAKKKEGEEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGF-DETDKFLAVLLTRILFPYLLFI 146 (518)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 666678999987060557999999999999999999999999988999999717897-5156899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCC
Q ss_conf 655344577877665433457889999888643245531012--1023131027999999999999997113-----666
Q 537021.9.peg.4 82 LLSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFPFIG--GYGIATAEVSWVWVNTICLAVALLKRRQ-----IDL 154 (235)
Q Consensus 82 ~l~~il~~~~ya~~~~~~p~~~~~i~~iini~l~~~li~~~g--~~G~a~at~is~~v~~~il~~~l~k~~~-----~~~ 154 (235)
++..+....+++.|+-..|....+.-.+.-|..+..+.|... ..++++++.++...|..+.+..++|... +..
T Consensus 147 sL~al~~aiLNs~~~F~~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~ 226 (518)
T COG0728 147 SLSALFGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGF 226 (518)
T ss_pred HHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99999999984037212044649999999999999854100047899999999999999999999999836544787888
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6889999999999999999999999998643
Q 537021.9.peg.4 155 PFQTIYRILSIFISSGLMGMFIVFFKPCLFN 185 (235)
Q Consensus 155 ~~~~~~~~~k~~~as~im~~~~~~~~~~~~~ 185 (235)
+.+..+++.+......+- ..+.......++
T Consensus 227 ~~~~lk~~~~~~~p~~l~-~sisQi~lli~~ 256 (518)
T COG0728 227 KDPGLKRFLKLMLPALLG-VSISQINLLIDT 256 (518)
T ss_pred CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_conf 715599999999999999-999999999999
No 22
>TIGR02900 spore_V_B stage V sporulation protein B; InterPro: IPR014249 This entry represents SpoVB, which is the stage V sporulation protein B of the bacterial endospore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with high sequence similarity to SpoVB exist, such as YkvU from B. subtilis and a number Clostridium proteins, but they are excluded from this entry. .
Probab=99.12 E-value=6.4e-09 Score=62.34 Aligned_cols=137 Identities=18% Similarity=0.213 Sum_probs=116.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99889962978999999999999999999999999999889999999707898889987777789999999999965534
Q 537021.9.peg.4 7 KLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGFLLSRV 86 (235)
Q Consensus 7 ~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~~l~~i 86 (235)
..|++.++||+++.+|.+.-++-+.+..++-.++.++.+++=|-+.+.. | +-+-..+.+..+.+|+.++..+
T Consensus 63 ~~Ae~~a~~D~~n~~kil~~S~~f~~~~s~~v~~~~f~~~p~Ia~~ll~-------D-~R~~~~l~~i~P~~~~iA~Ssv 134 (493)
T TIGR02900 63 FVAEASAKNDKKNIKKILKVSLIFTLIWSLIVTAIVFLLAPFIASTLLK-------D-ERSLYSLLVICPAVPIIALSSV 134 (493)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------C-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999871377446689999999999999999999999998999985167-------6-0789999998328999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 457787766543345788999988864324553101-------21023131027999999999999997113
Q 537021.9.peg.4 87 LLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFPFI-------GGYGIATAEVSWVWVNTICLAVALLKRRQ 151 (235)
Q Consensus 87 l~~~~ya~~~~~~p~~~~~i~~iini~l~~~li~~~-------g~~G~a~at~is~~v~~~il~~~l~k~~~ 151 (235)
+-..||+.+|.|.|.++.++-=++=|..-..++..| -+.|+-++-+++|.++.+.++...+|++.
T Consensus 135 LkGYFqG~~~~~~~A~~qv~Eq~vRI~~~~~li~~F~~~~~e~ava~A~~~~~lGE~~SLl~l~~~f~~~~~ 206 (493)
T TIGR02900 135 LKGYFQGISNMKPPAYIQVIEQIVRISVVALLISLFLPYGVEYAVAGAYLSLVLGELVSLLYLYFFFKRKKS 206 (493)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 888755355054678999999999999999999988413688999999999999999999999999888600
No 23
>TIGR01695 mviN integral membrane protein MviN; InterPro: IPR004268 The sequencing of a number of pathogenic bacterial genomes has led to novel virulence proteins being discovered that are yet to be biochemically characterised. One example is the MviN family of proteins, first described in Salmonella , and conserved across a wide variety of pathogens in both animals and plants. Further work on these proteins of as yet unknown function has revealed they are integral membrane molecules, and are part of an operon essential in at least one species . ; GO: 0009405 pathogenesis, 0016021 integral to membrane.
Probab=99.00 E-value=6.8e-07 Score=52.26 Aligned_cols=183 Identities=16% Similarity=0.139 Sum_probs=142.7
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH---HHHHHHHHHHHHHHH
Q ss_conf 02677998899629789999999999999999999999999998899999997078988899---877777899999999
Q 537021.9.peg.4 2 AALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQD---TILVSSYLSIYSTEI 78 (235)
Q Consensus 2 ~allP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~---~~~~~~~L~~~~~~l 78 (235)
.|-.|..+++..++.+|+.++...+..-......+-..+.+..+..|++.-++-.|.|+++. ...+...+++..+-+
T Consensus 63 ~aFvP~f~~~~~~~g~~~~~~~f~~~~~~l~~~~~~l~~~~~~~~a~~~~~l~a~g~~~~~~~nk~~~a~~l~~~~~pyl 142 (538)
T TIGR01695 63 SAFVPVFKKAKKKEGEKEARRAFAEKVLTLLILVLLLVVLLGIFFAPIVISLLAPGLFADDAANKFSLAVSLLRITFPYL 142 (538)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999999615557888999999999999999999999999788899731764357402458999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH------------HHHHHHHHHHHHHHHHHH
Q ss_conf 99965534457787766543345788999988864324553101210231------------310279999999999999
Q 537021.9.peg.4 79 VGFLLSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFPFIGGYGIA------------TAEVSWVWVNTICLAVAL 146 (235)
Q Consensus 79 ~~~~l~~il~~~~ya~~~~~~p~~~~~i~~iini~l~~~li~~~g~~G~a------------~at~is~~v~~~il~~~l 146 (235)
+..++..+...++++.|+-..|....+...+.-|+.-..+.+.+|....+ ++++++..+|.+..+-.+
T Consensus 143 ~l~sL~~~~~~~Ln~~~~F~~ps~~P~l~N~~~I~~l~~~~~~~~~~~~~g~~~~~~~~LL~~gvl~GG~~Q~l~~~~~l 222 (538)
T TIGR01695 143 LLISLAAVFGAILNARERFFIPSFSPVLFNISVIVSLLFLDVSLGQLALAGMYLALIELLLAIGVLIGGVAQLLIQLPAL 222 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999997755552567999999999999999998630124666678999999999999999999999999997
Q ss_pred HHHC--------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9711--------36666889999999999999999999999998643
Q 537021.9.peg.4 147 LKRR--------QIDLPFQTIYRILSIFISSGLMGMFIVFFKPCLFN 185 (235)
Q Consensus 147 ~k~~--------~~~~~~~~~~~~~k~~~as~im~~~~~~~~~~~~~ 185 (235)
+|.+ .++...+..++.++..... +++..+.......+.
T Consensus 223 ~~~G~R~~~~~prf~~~~~~l~~~l~~~~p~-~lg~s~~q~~~l~~t 268 (538)
T TIGR01695 223 RKAGIRGLLLKPRFNFRDPGLKRFLKLMLPT-TLGVSASQITLLINT 268 (538)
T ss_pred HCCCCHHHHHHHCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 1067303553101033545899999999999-999999999999999
No 24
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=98.95 E-value=2.5e-07 Score=54.39 Aligned_cols=142 Identities=15% Similarity=0.143 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 26779988996297899999999999999999999999999988999999970789888998777778999999999996
Q 537021.9.peg.4 3 ALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGFL 82 (235)
Q Consensus 3 allP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~~ 82 (235)
+.-|...++..+||.++.++..+.+++....+++..++.+..+++|++.+ |-. |++-.......+.+..+.-+..+
T Consensus 290 a~~~lvGq~~GA~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~i~~l-Ft~---d~~v~~l~~~~l~~~~~~~~~~~ 365 (439)
T PRK10367 290 AVEAHSGQAYGARDGSQLLDVWRAACRQSGIVALLFSVVYLLAGEHIIAL-LTS---LPQIQQLADRYLIWQVILPLVGV 365 (439)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCC---CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999877998999999999999999999999999999999999877-299---59999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5534457787766543345788999988864324553101210231310279999999999999971
Q 537021.9.peg.4 83 LSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFPFIGGYGIATAEVSWVWVNTICLAVALLKR 149 (235)
Q Consensus 83 l~~il~~~~ya~~~~~~p~~~~~i~~iini~l~~~li~~~g~~G~a~at~is~~v~~~il~~~l~k~ 149 (235)
...++...+.+..|++. ++.+.....+...+.....+++|..|+=+|..+...+-.+.+.+..+|+
T Consensus 366 ~~~~l~Gv~~Ga~~~~~-~~~~~~~~~~~~~~~l~~~~~lG~~GiW~a~~i~~~~r~i~l~~~~rr~ 431 (439)
T PRK10367 366 WCYLLDGMFIGATRAAE-MRNSMAVAAAGFALTLLTLPWLGNHGLWLALTVFLALRGLSLAAIWRRH 431 (439)
T ss_pred HHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999899993214177-9999999999999999999987588999999999999999999999998
No 25
>KOG1347 consensus
Probab=98.90 E-value=1.9e-08 Score=59.98 Aligned_cols=206 Identities=16% Similarity=0.106 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 26779988996297899999999999999999999999999988999999970789888998777778999999999996
Q 537021.9.peg.4 3 ALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGFL 82 (235)
Q Consensus 3 allP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~~ 82 (235)
++=|.-++++..++.+......+++.-......+|.+... ...+||...+ +. +++-.........+..++++.++
T Consensus 87 aletlcgQa~ga~~~~~lg~~lqrs~~~l~~~~~~~~~l~-~~~~~il~~l-gq---~~~i~~~a~~y~~~~ip~~~a~~ 161 (473)
T KOG1347 87 ALDTLCGQAFGAKKFTALGVYLQRSGIVLLVQGLPISLLI-LNSEPILLLL-GQ---DPDISRDAGSYAFMLIPGLFSYA 161 (473)
T ss_pred HHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHH-CC---CHHHHHHHCCEEEEEECCCCCHH
T ss_conf 1302104541862122338899999999987654568699-7019899872-79---84666774130135503444113
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHC------CCCC
Q ss_conf 553445778776654334578899998886432455310--12102313102799999999999999711------3666
Q 537021.9.peg.4 83 LSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFPF--IGGYGIATAEVSWVWVNTICLAVALLKRR------QIDL 154 (235)
Q Consensus 83 l~~il~~~~ya~~~~~~p~~~~~i~~iini~l~~~li~~--~g~~G~a~at~is~~v~~~il~~~l~k~~------~~~~ 154 (235)
....+++.+++.+++....+.+..+..+|+.+++.+++. +|..|++++..++.|.+...+..+..-.. ++..
T Consensus 162 ~~~~l~~~lq~Q~~~~~~~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~ 241 (473)
T KOG1347 162 VSFPLAKFLQAQSITLPLLVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSG 241 (473)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHH
T ss_conf 33389999765388522889988888740210013688435588761245433689999976330453261665534356
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68899999999999999999999999986432--0221059999999999999999999999
Q 537021.9.peg.4 155 PFQTIYRILSIFISSGLMGMFIVFFKPCLFNQ--LSAETAFSPFKNLAIILSGAVLVYLCSI 214 (235)
Q Consensus 155 ~~~~~~~~~k~~~as~im~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~y~~~~ 214 (235)
..+.++.+.|..+++++|...=++....+... ...+ .........+........|....
T Consensus 242 ~~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~n-p~~~~~~~sI~~~~~~~~~~~~~ 302 (473)
T KOG1347 242 EFDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGN-AKVSLASQSICLEIGGWHLMIPG 302 (473)
T ss_pred HHHHHHHHHHHHCCHHHEEHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 55328999998644032333889999999999066588-50457889999998899987543
No 26
>KOG2864 consensus
Probab=98.83 E-value=5.3e-07 Score=52.79 Aligned_cols=139 Identities=15% Similarity=0.179 Sum_probs=104.1
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79988996297899999999999999999999999999988999999970789888998777778999999999996553
Q 537021.9.peg.4 6 PKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGFLLSR 85 (235)
Q Consensus 6 P~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~~l~~ 85 (235)
-++.+.-.++|.++..+.+++.+++...++.-+.+.....+++++. +|++..++..+ .+..|++|..-+|+.+++.
T Consensus 307 A~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~-lygG~kwss~~---~~~lL~~YclYI~~lAiNG 382 (530)
T KOG2864 307 ARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLL-LYGGSKWSSGG---GSLLLSWYCLYIPFLAING 382 (530)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH-HHCCCCCCCCC---CHHHHHHHHHHHHHHHHCC
T ss_conf 9996023545589999999999999999998982007641289999-97575346898---4399999999999999603
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4457787766543345---78899998886432455310121023131027999999999999997
Q 537021.9.peg.4 86 VLLSEFYARNDVKTPA---KFYILSIVMGFVIAIGLFPFIGGYGIATAEVSWVWVNTICLAVALLK 148 (235)
Q Consensus 86 il~~~~ya~~~~~~p~---~~~~i~~iini~l~~~li~~~g~~G~a~at~is~~v~~~il~~~l~k 148 (235)
+.-..++|-.+.+.-. +.-.+..++..++|+.|+.++|..|.-+|+.+..-+-....++..++
T Consensus 383 itEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864 383 ITEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRWFGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred HHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 889999996337778761532269999999999999999552279999888899999999999999
No 27
>pfam04506 Rft-1 Rft protein.
Probab=98.63 E-value=1.5e-05 Score=45.56 Aligned_cols=131 Identities=13% Similarity=0.130 Sum_probs=100.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78999999999999999999999999999889999999707898889987777789999999999965534457787766
Q 537021.9.peg.4 16 NKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGFLLSRVLLSEFYARN 95 (235)
Q Consensus 16 ~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~~l~~il~~~~ya~~ 95 (235)
|.++..+.+..-+|....+++.+.+..-..++.+.++++|+ +.+..+ ...+|++|..=+|+.+++.+.-...+|--
T Consensus 322 ~~~~a~~~L~~llk~~~~igL~i~~FGp~ys~~lL~ll~G~-~ws~~~---~~~lL~~Yc~YIp~LAiNGItEAF~~ava 397 (533)
T pfam04506 322 NHKDAVDVLSNLLHVVSYIGLVAITFGIPYSPVVLLLYGGS-KWSENG---GASLLSWYCGYIPFLAINGITEGFAMASA 397 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC-CCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 79999999999999999999999981710089999996776-565787---78999999999999997009999999957
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 54334---57889999888643245531012102313102799999999999999711
Q 537021.9.peg.4 96 DVKTP---AKFYILSIVMGFVIAIGLFPFIGGYGIATAEVSWVWVNTICLAVALLKRR 150 (235)
Q Consensus 96 ~~~~p---~~~~~i~~iini~l~~~li~~~g~~G~a~at~is~~v~~~il~~~l~k~~ 150 (235)
+.+.- -+.-.+..++....++.++.++|..|.-+|+.+....=.....++.++..
T Consensus 398 t~~el~~~n~~M~~fS~~fl~~sy~l~~~lG~~GlI~AN~iNM~lRI~ys~~fI~~yf 455 (533)
T pfam04506 398 TSRQIFKHGKFMFAFSVIFLIISYVLCVYLGSAGFILANIINMSLRILYNWRFIRHYY 455 (533)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999998707228999999889999999999999983
No 28
>TIGR00797 matE MATE efflux family protein; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transporter activity, 0015297 antiporter activity, 0006855 multidrug transport, 0016020 membrane.
Probab=98.47 E-value=8.1e-06 Score=46.90 Aligned_cols=109 Identities=18% Similarity=0.225 Sum_probs=96.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7998899629789999999999999999999999999998899---9999970789888998777778999999999996
Q 537021.9.peg.4 6 PKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKE---IIQTLYERGAFTAQDTILVSSYLSIYSTEIVGFL 82 (235)
Q Consensus 6 P~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~p---iv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~~ 82 (235)
=+..++..++|.|+.++....+++....++.-.++.++..+++ +.+ +|-. |+|-.+.....+.+.++..+..+
T Consensus 284 ~~vG~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Pi~~-lFt~---d~~v~~~~~~~l~~~~~~~~~~~ 359 (412)
T TIGR00797 284 ILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFREVGLPIAR-LFTN---DPEVLELAASYLIFVALFQFSDG 359 (412)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH-HHCC---CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999985146878999999999999999999999999983023642455-5079---57699999999999999998778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_conf 5534457787766543345788999988-86432455
Q 537021.9.peg.4 83 LSRVLLSEFYARNDVKTPAKFYILSIVM-GFVIAIGL 118 (235)
Q Consensus 83 l~~il~~~~ya~~~~~~p~~~~~i~~ii-ni~l~~~l 118 (235)
.+.++..++.+.+|++.++++++.+..+ .+...+++
T Consensus 360 ~~~v~~G~lrG~G~~~~~~~~~~~~~~~~~lP~~~ll 396 (412)
T TIGR00797 360 IQFVLSGVLRGAGDTKVILIITFISYWVIGLPVGYLL 396 (412)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999998327257999999999999999999999
No 29
>PRK10459 colanic acid exporter; Provisional
Probab=97.23 E-value=0.0086 Score=31.87 Aligned_cols=139 Identities=13% Similarity=0.053 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999889999999707898889987777789999999999965534457787766543
Q 537021.9.peg.4 19 QSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGFLLSRVLLSEFYARNDVK 98 (235)
Q Consensus 19 ~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~~l~~il~~~~ya~~~~~ 98 (235)
.-++..+....+....++-..+.+...++++.. .|+. +.....++..+++.+..+........++...|-|
T Consensus 72 ~~~~~~~t~f~l~l~~g~~l~~ll~~~a~~ia~-~y~~--------p~l~~ll~~l~l~~~i~~~~~~~~a~l~r~l~Fk 142 (492)
T PRK10459 72 ISHLQLSTLYWLNVGLGIVVFVLVFLLSPLIAD-FYHN--------PELAPLIKTLSLAFVIIPIGQQFRYLLQKDLEFN 142 (492)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 987899599999999999999999999999999-8487--------5799999999999999998899999999985329
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHH
Q ss_conf 3457889999888643245531-012102313102799999999999999711--3666688999999999
Q 537021.9.peg.4 99 TPAKFYILSIVMGFVIAIGLFP-FIGGYGIATAEVSWVWVNTICLAVALLKRR--QIDLPFQTIYRILSIF 166 (235)
Q Consensus 99 ~p~~~~~i~~iini~l~~~li~-~~g~~G~a~at~is~~v~~~il~~~l~k~~--~~~~~~~~~~~~~k~~ 166 (235)
.-....+.+.++..+..+.+.. .+|..++++++..+..+...+.++..+++. ...++.+..+++.+..
T Consensus 143 ~~a~~~~~~~l~~~~v~i~lA~~g~g~walv~~~l~~~~~~~il~~~~~~~~~rp~~~f~~~~~k~~~~Fg 213 (492)
T PRK10459 143 KLGKIEISSVLAGFTFTVVSAFFWPLAMAAILGYLVNSSVKTLLFGYFGRKIYRPGLHFSLASVSPNLSFG 213 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999999999999999998558999999999999999999999983057987662788899999887
No 30
>pfam01943 Polysacc_synt Polysaccharide biosynthesis protein. Members of this family are integral membrane proteins. Many members of the family are implicated in production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon. The family includes SpoVB from Bacillus subtilis, which is involved in spore cortex biosynthesis.
Probab=94.99 E-value=0.18 Score=25.35 Aligned_cols=154 Identities=12% Similarity=0.005 Sum_probs=83.8
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79988996297899999999999999999999999999988999999970789888998777778999999999996553
Q 537021.9.peg.4 6 PKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGFLLSR 85 (235)
Q Consensus 6 P~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~~l~~ 85 (235)
+.+.|..++++.++.++.. ........-.+........++.. .+.. +..... .........+......
T Consensus 58 ~a~~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~----~~~~~~~~~~~~~~~~ 125 (272)
T pfam01943 58 AALVREIARYRDDEKSSKY----ISNVLLGKLLLSLIFLLILLIAA-FLGL---PDLAVI----LLILALAILLLPGVSQ 125 (272)
T ss_pred HHHHHHHHHCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-HHCC---CHHHHH----HHHHHHHHHHHHHHHH
T ss_conf 9999998752308888999----99999999999999999999999-9878---437999----9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCHHHHHH
Q ss_conf 44577877665433457889999888643245531-0121023131027999999999999997113---6666889999
Q 537021.9.peg.4 86 VLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFP-FIGGYGIATAEVSWVWVNTICLAVALLKRRQ---IDLPFQTIYR 161 (235)
Q Consensus 86 il~~~~ya~~~~~~p~~~~~i~~iini~l~~~li~-~~g~~G~a~at~is~~v~~~il~~~l~k~~~---~~~~~~~~~~ 161 (235)
.....+++.++.+..........+...+....+.. ..+..+...+...+..+.....+...+++.. ...+++..++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 205 (272)
T pfam01943 126 FFSWLFQGLEKMKYIAISMIIEKLGSLILVFIAVFLGLDLLAAVLILLIASLIGGIIALAVLRKKFLPRFVFFSLKLFKE 205 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 99999999998999999999999999999999999715699999999999999999999999998535646788999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q 537021.9.peg.4 162 ILSIFISSGL 171 (235)
Q Consensus 162 ~~k~~~as~i 171 (235)
..+......+
T Consensus 206 ~l~~~~p~~~ 215 (272)
T pfam01943 206 LLRFSWPLFL 215 (272)
T ss_pred HHHHHHHHHH
T ss_conf 9988789999
No 31
>pfam04138 GtrA GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyses the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosyla
Probab=81.35 E-value=3.1 Score=19.13 Aligned_cols=87 Identities=15% Similarity=0.127 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 788999988864324553101210231310279999999999999971136666-8899999999999999999999999
Q 537021.9.peg.4 102 KFYILSIVMGFVIAIGLFPFIGGYGIATAEVSWVWVNTICLAVALLKRRQIDLP-FQTIYRILSIFISSGLMGMFIVFFK 180 (235)
Q Consensus 102 ~~~~i~~iini~l~~~li~~~g~~G~a~at~is~~v~~~il~~~l~k~~~~~~~-~~~~~~~~k~~~as~im~~~~~~~~ 180 (235)
.++.++.++|..+-..+...+|. ....|+.++..+..+.. +.++|+.-++.+ ....++..|..+........-....
T Consensus 4 ivG~~~~~v~~~~~~~l~~~~~~-~~~~A~~ia~~~~~~~~-f~~n~~~tF~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 81 (116)
T pfam04138 4 LVGVLGTLVDLGVFLLLLNLLGL-SYLLANAIAFLVAILFN-YLLNRRWTFRSRGRGSLRQFLRFFLVSLLGLLLNLLLL 81 (116)
T ss_pred EEEHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH-HHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 76399999999999999999788-89999999999999999-99775026579996349999999999999999999999
Q ss_pred HHHHHHCCCC
Q ss_conf 9864320221
Q 537021.9.peg.4 181 PCLFNQLSAE 190 (235)
Q Consensus 181 ~~~~~~~~~~ 190 (235)
..+.+++..+
T Consensus 82 ~~~~~~l~~~ 91 (116)
T pfam04138 82 YLLVDLLGLD 91 (116)
T ss_pred HHHHHHHCCH
T ss_conf 9999982855
No 32
>TIGR00906 2A0303 cationic amino acid transport permease; InterPro: IPR004755 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related , , . These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Some proteins in this family are low-affinity, high capacity permeases involved in the transport of arginine, lysine and ornithine, the cationinc amino acids.; GO: 0006865 amino acid transport, 0016021 integral to membrane.
Probab=71.03 E-value=6.2 Score=17.65 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 54334578899998886432455
Q 537021.9.peg.4 96 DVKTPAKFYILSIVMGFVIAIGL 118 (235)
Q Consensus 96 ~~~~p~~~~~i~~iini~l~~~l 118 (235)
|||||...++...++|-++.+.+
T Consensus 386 KTkTPi~AT~~~~~i~A~~Aflf 408 (616)
T TIGR00906 386 KTKTPINATVVSGAIAALMAFLF 408 (616)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 66782798999999999999999
No 33
>COG4267 Predicted membrane protein [Function unknown]
Probab=68.76 E-value=7.1 Score=17.36 Aligned_cols=123 Identities=12% Similarity=0.078 Sum_probs=69.2
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98899629789999999999999999999999999998899999997078988899877777899999999999655344
Q 537021.9.peg.4 8 LSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGFLLSRVL 87 (235)
Q Consensus 8 lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~~l~~il 87 (235)
+|.+.-++|.++......-++.++.+.+--.. . ++ .+- +++.+.. ...+..+ ....++..=+.
T Consensus 88 iSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig-------~-~v--f~~---~~~~si~--yk~l~~~--~FV~m~~~Wi~ 150 (467)
T COG4267 88 ISDCLFEKKQRKILPSYIGVILLVTLVAGVIG-------L-IV--FFV---NNQYSIV--YKILACA--LFVGMSLVWIL 150 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-HH--HHH---CCCHHHH--HHHHHHH--HHHHHHHHHHH
T ss_conf 88788788898876767899999999999998-------7-76--320---4855599--9999999--99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5778776654334578899998886432455310121023131027999999999999997
Q 537021.9.peg.4 88 LSEFYARNDVKTPAKFYILSIVMGFVIAIGLFPFIGGYGIATAEVSWVWVNTICLAVALLK 148 (235)
Q Consensus 88 ~~~~ya~~~~~~p~~~~~i~~iini~l~~~li~~~g~~G~a~at~is~~v~~~il~~~l~k 148 (235)
.....+.+|.|..++.-.+|.++.+.+...+-.. +..|.-++-.++-....+.+..+..+
T Consensus 151 ~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~~-~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 151 MIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLKS-PIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999988999999999999999999999999973-79999999997589999999999999
No 34
>PRK11017 codB cytosine permease; Provisional
Probab=67.52 E-value=7.6 Score=17.22 Aligned_cols=17 Identities=12% Similarity=-0.042 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHCCCHHHH
Q ss_conf 267799889962978999
Q 537021.9.peg.4 3 ALLPKLSSAIQLENKQQS 20 (235)
Q Consensus 3 allP~lS~~~~~~~~~~~ 20 (235)
..-|+.||+.++ +++.+
T Consensus 187 ~~~~D~tRfak~-~k~~~ 203 (394)
T PRK11017 187 TLTADFVRFGRS-AKVAV 203 (394)
T ss_pred HHCCCHHHHCCC-CCCCH
T ss_conf 873657766268-75411
No 35
>PTZ00042 stevor; Provisional
Probab=54.74 E-value=13 Score=16.01 Aligned_cols=34 Identities=26% Similarity=0.187 Sum_probs=22.8
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 1012102313102799999999999999711366
Q 537021.9.peg.4 120 PFIGGYGIATAEVSWVWVNTICLAVALLKRRQID 153 (235)
Q Consensus 120 ~~~g~~G~a~at~is~~v~~~il~~~l~k~~~~~ 153 (235)
..|+..|+|.-..+...|..++++.|++||+...
T Consensus 260 ~~F~P~GIaalVLlilaVvLIILYIWLyrRRKnS 293 (304)
T PTZ00042 260 AAFYPCGIAALVLLILAVVLIILYIWLYRRRKNS 293 (304)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 6411629999999999999999999999841242
No 36
>TIGR00795 lctP transporter, lactate permease (LctP) family; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport.
Probab=40.11 E-value=24 Score=14.77 Aligned_cols=108 Identities=15% Similarity=0.075 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHH-CC---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999998899-9999970-78---------988899877777899999999999655344577877665433457
Q 537021.9.peg.4 34 FGIPCTAILLMLPKE-IIQTLYE-RG---------AFTAQDTILVSSYLSIYSTEIVGFLLSRVLLSEFYARNDVKTPAK 102 (235)
Q Consensus 34 i~iP~~~gl~~l~~p-iv~~lf~-~G---------~f~~~~~~~~~~~L~~~~~~l~~~~l~~il~~~~ya~~~~~~p~~ 102 (235)
+++|...+.-+...| +++-..| +| +..-+--.+++..+.+.++..|++ +..++.+-....+|+.....
T Consensus 173 vGiPi~~~~~~~~~~PvvkevlesyGytlkqfly~D~~~~is~~~g~~l~~~~l~ipf~-~v~l~dg~~~giK~~~p~~~ 251 (575)
T TIGR00795 173 VGIPIWVGAQATGLSPVVKEVLESYGYTLKQFLYEDVALEISSMTGFQLPFISLLIPFL-LVFLMDGKWKGIKETFPAVL 251 (575)
T ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCHHHHHHHHHH
T ss_conf 40778775442157478999887521789999987499999999999999999999999-99997388123889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8899998886432455310121023131027999999999999997
Q 537021.9.peg.4 103 FYILSIVMGFVIAIGLFPFIGGYGIATAEVSWVWVNTICLAVALLK 148 (235)
Q Consensus 103 ~~~i~~iini~l~~~li~~~g~~G~a~at~is~~v~~~il~~~l~k 148 (235)
++..|..+-..+ .-...|.-+..-+|..++..+..+++++
T Consensus 252 ~~g~Sfai~q~l------~s~~lGPELP~i~g~l~sl~~~~~~lk~ 291 (575)
T TIGR00795 252 VAGLSFAIPQFL------ISNVLGPELPSILGALVSLVILALFLKF 291 (575)
T ss_pred HHHHHHHHHHHH------HHHHHCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 997368999999------9975240048899999999999999853
No 37
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=37.75 E-value=26 Score=14.57 Aligned_cols=65 Identities=11% Similarity=-0.012 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 121023131027999999999999997113666688999999999999999999999999864320
Q 537021.9.peg.4 122 IGGYGIATAEVSWVWVNTICLAVALLKRRQIDLPFQTIYRILSIFISSGLMGMFIVFFKPCLFNQL 187 (235)
Q Consensus 122 ~g~~G~a~at~is~~v~~~il~~~l~k~~~~~~~~~~~~~~~k~~~as~im~~~~~~~~~~~~~~~ 187 (235)
+|.+-.-+. ....-+.+.+++++.++...-+..+....+.+-....+....+.+.+....+...+
T Consensus 125 ~GlItlll~-a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~~sm~lWi~v~i~t~~lPtsl 189 (226)
T COG4858 125 YGLITLLLT-AVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAVLSMLLWIAVMIATVFLPTSL 189 (226)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 217999999-98666999999999987624345588419999999999999999999995078767
No 38
>pfam01312 Bac_export_2 FlhB HrpN YscU SpaS Family. This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.
Probab=32.55 E-value=32 Score=14.13 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999999999999999999999
Q 537021.9.peg.4 157 QTIYRILSIFISSGLMGMFIVFFK 180 (235)
Q Consensus 157 ~~~~~~~k~~~as~im~~~~~~~~ 180 (235)
+..+.++|..+-+.+...+++...
T Consensus 140 El~KsllKv~li~~v~~~~l~~~~ 163 (343)
T pfam01312 140 ELLKSILKVVAVGLIFYFFLKNDL 163 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999
No 39
>PRK11056 hypothetical protein; Provisional
Probab=31.64 E-value=33 Score=14.04 Aligned_cols=92 Identities=11% Similarity=0.004 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 76654334578899998886432455310121023131027999999999999997113666688999999999999999
Q 537021.9.peg.4 93 ARNDVKTPAKFYILSIVMGFVIAIGLFPFIGGYGIATAEVSWVWVNTICLAVALLKRRQIDLPFQTIYRILSIFISSGLM 172 (235)
Q Consensus 93 a~~~~~~p~~~~~i~~iini~l~~~li~~~g~~G~a~at~is~~v~~~il~~~l~k~~~~~~~~~~~~~~~k~~~as~im 172 (235)
.++|.+|-...-+.|.-.|-.++..+... .+.++--.+..++..+.++++......-+ ...+...+..+.
T Consensus 5 ~~~ek~tLlLaliaGl~~na~~s~Lf~s~-------VpFSiFP~IaLvlavyclyq~Yl~~~m~e---g~p~~a~acFfl 74 (120)
T PRK11056 5 SRQEKKTLLLALIAGLSINGTFAALFSSI-------VPFSVFPLIALVLAVYCLYQRYLNRPMPE---GLPGLAAACFFL 74 (120)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCC-------CCCHHHHHHHHHHHHHHHHHHHHCCCCCC---CCHHHHHHHHHH
T ss_conf 33410236999999885003269987165-------51077899999999999999994688877---772899999999
Q ss_pred HHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 9999999998643202210599
Q 537021.9.peg.4 173 GMFIVFFKPCLFNQLSAETAFS 194 (235)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~ 194 (235)
|+..+...-....+-.++..+.
T Consensus 75 G~f~ysA~vraqyPe~GSNF~~ 96 (120)
T PRK11056 75 GVFLYSAFVRAEYPEIGSNFFP 96 (120)
T ss_pred HHHHHHHHHHHCCCCCCCCHHH
T ss_conf 9999999998237111243589
No 40
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=25.30 E-value=44 Score=13.45 Aligned_cols=140 Identities=9% Similarity=0.091 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCHHHHHH------HHHHHHH
Q ss_conf 26779988996297--89999999999999999999999999998899-999997078988899877------7778999
Q 537021.9.peg.4 3 ALLPKLSSAIQLEN--KQQSSELRNRAIEYVLFFGIPCTAILLMLPKE-IIQTLYERGAFTAQDTIL------VSSYLSI 73 (235)
Q Consensus 3 allP~lS~~~~~~~--~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~p-iv~~lf~~G~f~~~~~~~------~~~~L~~ 73 (235)
+.-++-||+..+++ +.-.--.+...+-........++.....-.++ +.....+.|.|....... +....-.
T Consensus 211 ~~~aDysRy~~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~~g~~~~lil~l~~~ttN~~nl 290 (442)
T COG1457 211 PYAADYSRYAPSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGGFGLPAILILVLGTVTTNANNL 290 (442)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHH
T ss_conf 11010265457885277999999999999999999999999853898517899983451888899999987874584778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999655344577877665433457889-999888643245531012102313102799999999999999711
Q 537021.9.peg.4 74 YSTEIVGFLLSRVLLSEFYARNDVKTPAKFYI-LSIVMGFVIAIGLFPFIGGYGIATAEVSWVWVNTICLAVALLKRR 150 (235)
Q Consensus 74 ~~~~l~~~~l~~il~~~~ya~~~~~~p~~~~~-i~~iini~l~~~li~~~g~~G~a~at~is~~v~~~il~~~l~k~~ 150 (235)
|+-++-+ ++..-...|...++...+ ++.++-+.+.. +...++.--.-+.+-+.-|....+--+++.||+
T Consensus 291 Ysa~ls~-------~~i~~~l~k~~~~v~~~v~igt~la~~~~~-f~~~f~~Fl~~i~~~i~P~~~I~iad~~~~rr~ 360 (442)
T COG1457 291 YSAGLSF-------ANIIPKLSKVTRVVIAGVGIGTLLALAGPF-FYNFFENFLLLLGYFIPPWGGVMIADYFIVRRR 360 (442)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8888789-------985166556899999999999999999999-999899999999999999999999999998431
No 41
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=25.28 E-value=44 Score=13.44 Aligned_cols=64 Identities=14% Similarity=0.318 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999965534457787766543345788999988864324553101-------21023131027999999999999997
Q 537021.9.peg.4 78 IVGFLLSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFPFI-------GGYGIATAEVSWVWVNTICLAVALLK 148 (235)
Q Consensus 78 l~~~~l~~il~~~~ya~~~~~~p~~~~~i~~iini~l~~~li~~~-------g~~G~a~at~is~~v~~~il~~~l~k 148 (235)
+++..+..++.-.|| |.+=.++.++.++|+++-+.....+ |+.|+.++ ++..+..-++.+--.|
T Consensus 356 ~ig~~lV~~fmi~~Y-----r~~G~~a~~aL~~~~~l~~~~l~~~~~tLTLpGIAGiiLt--iGmavDanVlifERir 426 (513)
T PRK05812 356 LIGLALVLLFMLLYY-----RLFGLIANIALVANLLLILAVLSLLGATLTLPGIAGIVLT--IGMAVDANVLIFERIR 426 (513)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHH--HHHHHCCCEEHHHHHH
T ss_conf 999999999999998-----5769999999999999999999995861538889899987--5430002541237779
No 42
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=24.70 E-value=45 Score=13.39 Aligned_cols=135 Identities=10% Similarity=-0.045 Sum_probs=71.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99889962978999999999999999999999999999889999999707898889987777789999999999965534
Q 537021.9.peg.4 7 KLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGFLLSRV 86 (235)
Q Consensus 7 ~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~~l~~i 86 (235)
.+|.+. .+|.++.--.+-.++|+..++-.|-......+..|..-+.+-..+++.... -..+.....+++. ...
T Consensus 24 ~i~~yl-~~~~~~A~l~fP~glrl~~~l~~p~~yWp~~~~~e~~l~~~l~~~~~~~~~---~~~l~~~~~sl~~---~~~ 96 (497)
T PRK11644 24 SISLHL-VERPELAVLLFPFGLRLGLMLQCPRGYWPVLLGAEWLLIYWLAQAVDLPHL---PLLLIGSLLTLLP---VAL 96 (497)
T ss_pred HHHHHH-CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH---HHH
T ss_conf 999998-188889999820799999999754157589999999999999986103678---9999999999999---999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHH----HHHHHHHHHHHHHHHHHHC
Q ss_conf 457787766543345788999988864324553101210-231310----2799999999999999711
Q 537021.9.peg.4 87 LLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFPFIGGY-GIATAE----VSWVWVNTICLAVALLKRR 150 (235)
Q Consensus 87 l~~~~ya~~~~~~p~~~~~i~~iini~l~~~li~~~g~~-G~a~at----~is~~v~~~il~~~l~k~~ 150 (235)
.++.+|..+..|. ......+.++..+|.+.....+.. +..+=. .+--.-.+.+++.+++++.
T Consensus 97 ~~~~~~~~~w~~L--~~~~~~v~~~~ll~~l~~~~~~~~~~~~~L~~~tgg~~l~p~~yLl~~yL~~~~ 163 (497)
T PRK11644 97 ISRYRHQRDWRTL--LLQGAALTAAALLQSLPWLWHGKSGWMALLLTLTGGLTLAPICLLLWHYLARNT 163 (497)
T ss_pred HHHHHCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9987551107899--999999999999999999983378999999999505999999999999997453
No 43
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=24.55 E-value=45 Score=13.37 Aligned_cols=86 Identities=20% Similarity=0.257 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78988899877777899999---------------------------999999655344577877665433457889999
Q 537021.9.peg.4 56 RGAFTAQDTILVSSYLSIYS---------------------------TEIVGFLLSRVLLSEFYARNDVKTPAKFYILSI 108 (235)
Q Consensus 56 ~G~f~~~~~~~~~~~L~~~~---------------------------~~l~~~~l~~il~~~~ya~~~~~~p~~~~~i~~ 108 (235)
.|.|+.+.....+..|+.=+ -+++++.+..++.-.|| |.+=.++.+++
T Consensus 398 tG~ft~~eA~dLA~lLraGaLpap~~iveertVGpsLG~dsi~~g~~A~~iG~~lV~~fM~~~Y-----r~~G~iA~iaL 472 (604)
T PRK12933 398 TGAGSYQEAQQLALLLRAGSMTAPVTIVEERTIGPSLGAENIENGFAALALGMGITLLFMALWY-----RRLGWVANVAL 472 (604)
T ss_pred ECCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
T ss_conf 4578788899999998559988876777888528555599999999999999999999999998-----55299999999
Q ss_pred HHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88864324553101--------21023131027999999999999997
Q 537021.9.peg.4 109 VMGFVIAIGLFPFI--------GGYGIATAEVSWVWVNTICLAVALLK 148 (235)
Q Consensus 109 iini~l~~~li~~~--------g~~G~a~at~is~~v~~~il~~~l~k 148 (235)
++|+++-+.....+ |+.|+.++ ++..+..=++.+--.|
T Consensus 473 ~~n~~l~~~~ls~l~gatLTLPGIAGivLt--iGmAVDaNVlifERir 518 (604)
T PRK12933 473 IANMVCLFGLLALIPGAVLTLPGIAGLVLT--VGMAVDTNVLIFERIK 518 (604)
T ss_pred HHHHHHHHHHHHHHCCCEECHHHHHHHHHH--HHHHEECCCHHHHHHH
T ss_conf 999999999999850722736669999987--5110241513748889
No 44
>PRK11281 potassium efflux protein KefA; Provisional
Probab=22.98 E-value=49 Score=13.21 Aligned_cols=46 Identities=24% Similarity=0.323 Sum_probs=29.4
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77998899629789999999999999999999999999998899999
Q 537021.9.peg.4 5 LPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQ 51 (235)
Q Consensus 5 lP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~ 51 (235)
+.++++.+.+-+.|.+..+.. ++-...+...|....+.+.+.-+..
T Consensus 523 L~~~~~~vG~v~~Ds~~~T~~-al~~t~llalP~~l~~~~~G~~l~~ 568 (1107)
T PRK11281 523 LQKLAADIGHLKNDSQLHTPK-AILITLLLALPVTLIFLAVGLILLT 568 (1107)
T ss_pred HHHHHHHCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999998719915550574399-9999999997899999999999987
No 45
>pfam03597 CcoS Cytochrome oxidase maturation protein cbb3-type.
Probab=21.22 E-value=53 Score=13.02 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 9999999999999889999999707898889987
Q 537021.9.peg.4 32 LFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTI 65 (235)
Q Consensus 32 ~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~ 65 (235)
+++.+|.+..+..++--..-.--..|+|+..+..
T Consensus 3 l~~LIpisl~l~~~~l~~f~Wavk~gQfDDle~~ 36 (45)
T pfam03597 3 LYLLIPISLLLGAVGLAAFLWAVKSGQFDDLEGP 36 (45)
T ss_pred EEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 8623899999999999999998505877788775
No 46
>PRK10655 potE putrescine transporter; Provisional
Probab=21.05 E-value=54 Score=13.00 Aligned_cols=13 Identities=15% Similarity=0.455 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 3345788999988
Q 537021.9.peg.4 98 KTPAKFYILSIVM 110 (235)
Q Consensus 98 ~~p~~~~~i~~ii 110 (235)
++|....+++.++
T Consensus 319 g~P~~all~~~vi 331 (438)
T PRK10655 319 DAPVQGMLIIVVI 331 (438)
T ss_pred CCCHHHHHHHHHH
T ss_conf 9977999999999
Done!