Query 537021.9.peg.477_1
Match_columns 235
No_of_seqs 133 out of 1753
Neff 8.8
Searched_HMMs 33803
Date Wed May 25 03:33:43 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_477.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2j8s_A ACRB, acriflavine resi 13.3 74 0.0022 12.0 15.5 206 18-233 21-232 (251)
2 >2zjs_Y Preprotein translocase 8.3 1.1E+02 0.0034 11.0 4.4 30 152-181 140-169 (224)
3 >3ez2_A Plasmid partition prot 6.0 1.1E+02 0.0032 11.2 -0.5 19 3-21 7-25 (62)
4 >1bh9_A TAFII18; histone fold, 5.7 1.6E+02 0.0047 10.3 0.3 13 46-58 3-15 (45)
5 >2r6f_A Excinuclease ABC subun 5.6 1.6E+02 0.0048 10.3 1.0 24 3-26 22-45 (58)
6 >3eml_A Human adenosine A2A re 5.0 1.8E+02 0.0052 10.1 1.9 22 5-26 32-53 (75)
7 >1vyk_A Oxygen-evolving enhanc 4.9 1.8E+02 0.0054 10.0 3.2 29 5-33 59-87 (149)
8 >3ez9_A Para; DNA binding, win 4.8 1.2E+02 0.0035 11.0 -1.0 18 3-20 10-27 (65)
9 >2rh1_A Beta-2-adrenergic rece 4.0 2.3E+02 0.0067 9.6 1.9 26 5-30 32-57 (78)
10 >2qb0_B Telsam domain - lysozy 3.9 2.4E+02 0.007 9.5 1.9 26 5-30 46-71 (94)
No 1
>>2j8s_A ACRB, acriflavine resistance protein B; membrane protein/complex, designed ankyrin repeat protein, multidrug resistance protein; HET: LMT LMU; 2.54A {Escherichia coli} PDB: 2dhh_A 1iwg_A 2dr6_A* 2drd_A* 2hqf_A 2hqg_A 2hqd_A 2hqc_A 2i6w_A 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 1t9x_A* 1t9t_A* 1t9v_A* ... (A:505-567,A:868-1055)
Probab=13.34 E-value=74 Score=11.99 Aligned_cols=206 Identities=8% Similarity=-0.018 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999988999999970789888998777778999999999996553445778776654
Q 537021.9.peg.4 18 QQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGFLLSRVLLSEFYARNDV 97 (235)
Q Consensus 18 ~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~~l~~il~~~~ya~~~~ 97 (235)
+.+.+.+.+.+|..... +...+.+....--... --..|=+++|+...........++.+.+..+.-. |.+...+
T Consensus 21 ~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~p~~f~p~~~s~~~~~~~~~iaivlv~ivl~i~----~rs~~~~ 94 (251)
T 2j8s_A 21 HHYTDSVGGILRSTGRY-LVLYLIIVVGMAYLFV-RLPSSFLPDELSGNQAPSLYAISLIVVFLCLAAL----YESWSIP 94 (251)
T ss_dssp HHHHHHHHHHHSSSSTH-HHHHHHHHHHHHHHHH-HSCBCSSCCCSSSCCCTHHHHHHHHHHHHHHHHH----TTCSSTH
T ss_pred HHHHHHHHHCCHHHHHH-HHHHHHHHHHHCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_conf 33466764210011333-1011122211112222-0010137640999899999999999999999999----8639999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 3345788999988864324553101---21023131027999999999999997---11366668899999999999999
Q 537021.9.peg.4 98 KTPAKFYILSIVMGFVIAIGLFPFI---GGYGIATAEVSWVWVNTICLAVALLK---RRQIDLPFQTIYRILSIFISSGL 171 (235)
Q Consensus 98 ~~p~~~~~i~~iini~l~~~li~~~---g~~G~a~at~is~~v~~~il~~~l~k---~~~~~~~~~~~~~~~k~~~as~i 171 (235)
-.++.....+.+........+-..+ ...|+.+...+ .+...+....-.+ +.......+-..+-.+-...+.+
T Consensus 95 li~l~~v~~~i~~~~~~l~l~g~~l~~~s~~~lilliGi--~vd~aI~iv~~~~e~~~~~g~~~~~A~~~a~~~~~~~I~ 172 (251)
T 2j8s_A 95 FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGL--SAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPIL 172 (251)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHTCCBSHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHSCBHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999997787579999999999999--983810579999999997699999999999999799999
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999998643202210599999999999999999999999998667689999973058
Q 537021.9.peg.4 172 MGMFIVFFKPCLFNQLSAETAFSPFKNLAIILSGAVLVYLCSISLLLGKGFLASLKYSLKTD 233 (235)
Q Consensus 172 m~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~r~~ 233 (235)
+......... ....+...........++..+..|.+.-... .++.-...+..+++...++
T Consensus 173 ~t~lt~~~~f-~~l~f~~~~g~~~~~~~gi~~~~gll~s~i~-~l~~~Pal~~~~~~~~~~~ 232 (251)
T 2j8s_A 173 MTSLAFILGV-MPLVISTGAGSGAQNAVGTGVMGGMVTATVL-AIFFVPVFFVVVRRRFSRK 232 (251)
T ss_dssp HHHHHHHHHT-HHHHHCCSSSHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHH-HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999-9998761872887665699999999999999-9999999999998753146
No 2
>>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, protein transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y (Y:211-434)
Probab=8.26 E-value=1.1e+02 Score=11.03 Aligned_cols=30 Identities=17% Similarity=0.042 Sum_probs=12.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 666688999999999999999999999999
Q 537021.9.peg.4 152 IDLPFQTIYRILSIFISSGLMGMFIVFFKP 181 (235)
Q Consensus 152 ~~~~~~~~~~~~k~~~as~im~~~~~~~~~ 181 (235)
.++.+...+.+-|..-.....|........
T Consensus 140 irpG~~T~~yL~k~i~~~t~~Ga~~l~~ia 169 (224)
T 2zjs_Y 140 IRPGEPTVKFLEHIVSRLTLWGALFLGLVT 169 (224)
T ss_dssp BCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 589866899999999999999999999999
No 3
>>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA binding protein; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A (A:41-102)
Probab=6.01 E-value=1.1e+02 Score=11.15 Aligned_cols=19 Identities=26% Similarity=0.094 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHCCCHHHHH
Q ss_conf 2677998899629789999
Q 537021.9.peg.4 3 ALLPKLSSAIQLENKQQSS 21 (235)
Q Consensus 3 allP~lS~~~~~~~~~~~~ 21 (235)
+=+|.|||...++-.+|+.
T Consensus 7 aklp~Ltr~~Vd~av~EME 25 (62)
T 3ez2_A 7 AKLPLLTRANVDYAVSEME 25 (62)
T ss_dssp GGSTTCCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
T ss_conf 8741998799999997311
No 4
>>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} (A:)
Probab=5.71 E-value=1.6e+02 Score=10.34 Aligned_cols=13 Identities=31% Similarity=0.450 Sum_probs=7.2
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 8999999970789
Q 537021.9.peg.4 46 PKEIIQTLYERGA 58 (235)
Q Consensus 46 ~~piv~~lf~~G~ 58 (235)
+.++-+++|+.|.
T Consensus 3 ~~ei~~mmy~~GD 15 (45)
T 1bh9_A 3 SKELRCMMYGFGD 15 (45)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCC
T ss_conf 6789999888089
No 5
>>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10} (A:291-311,A:394-430)
Probab=5.56 E-value=1.6e+02 Score=10.29 Aligned_cols=24 Identities=8% Similarity=0.229 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 267799889962978999999999
Q 537021.9.peg.4 3 ALLPKLSSAIQLENKQQSSELRNR 26 (235)
Q Consensus 3 allP~lS~~~~~~~~~~~~~~l~~ 26 (235)
=++|.+-|.+.+-+.+..++.+.+
T Consensus 22 GII~~LeRRY~ET~SE~~Re~Lek 45 (58)
T 2r6f_A 22 GVIPNVERRYRETSSDYIREQXEK 45 (58)
T ss_dssp CHHHHHHHHHHHCCCTTHHHHHGG
T ss_pred CCCCCHHHHHHHHCCHHHHHHHHH
T ss_conf 652327888887307888999986
No 6
>>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} (A:305-379)
Probab=5.00 E-value=1.8e+02 Score=10.09 Aligned_cols=22 Identities=5% Similarity=-0.000 Sum_probs=8.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 7799889962978999999999
Q 537021.9.peg.4 5 LPKLSSAIQLENKQQSSELRNR 26 (235)
Q Consensus 5 lP~lS~~~~~~~~~~~~~~l~~ 26 (235)
||..-++..++|++++.+.+.+
T Consensus 32 F~~~l~ai~~~dw~~Aa~e~~~ 53 (75)
T 3eml_A 32 FTNSLRMLQQKRWDEAAVNLAK 53 (75)
T ss_dssp CHHHHHHHHTTCHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCC
T ss_conf 7676554356788745566555
No 7
>>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A (A:)
Probab=4.86 E-value=1.8e+02 Score=10.04 Aligned_cols=29 Identities=7% Similarity=0.041 Sum_probs=21.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 77998899629789999999999999999
Q 537021.9.peg.4 5 LPKLSSAIQLENKQQSSELRNRAIEYVLF 33 (235)
Q Consensus 5 lP~lS~~~~~~~~~~~~~~l~~~l~~~~~ 33 (235)
++.++....+++|..+++.++......-.
T Consensus 59 Le~i~~~i~~k~W~~v~~~ir~~~~~L~~ 87 (149)
T 1vyk_A 59 ILNVKQFIDRKAWPSLQNDLRLRASYLRY 87 (149)
T ss_dssp HHTTHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 98889887364299999999988858999
No 8
>>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A (A:41-105)
Probab=4.80 E-value=1.2e+02 Score=10.96 Aligned_cols=18 Identities=39% Similarity=0.374 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHCCCHHHH
Q ss_conf 267799889962978999
Q 537021.9.peg.4 3 ALLPKLSSAIQLENKQQS 20 (235)
Q Consensus 3 allP~lS~~~~~~~~~~~ 20 (235)
+=+|.|||...++-.+|+
T Consensus 10 aklp~Ltr~~Vd~av~EM 27 (65)
T 3ez9_A 10 AKLPKLSRRIVDQAIKEM 27 (65)
T ss_dssp HHSTTCCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHH
T ss_conf 973585577799998766
No 9
>>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3d4s_A* (A:319-396)
Probab=4.03 E-value=2.3e+02 Score=9.56 Aligned_cols=26 Identities=8% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 77998899629789999999999999
Q 537021.9.peg.4 5 LPKLSSAIQLENKQQSSELRNRAIEY 30 (235)
Q Consensus 5 lP~lS~~~~~~~~~~~~~~l~~~l~~ 30 (235)
||..-++..++|++++.+.+.+|...
T Consensus 32 F~~~l~ai~~~dw~~Aa~el~~S~W~ 57 (78)
T 2rh1_A 32 FTNSLRMLQQKRWDEAAVNLAKSRWY 57 (78)
T ss_dssp CHHHHHHHHTTCHHHHHHHHTTSHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 77755433567777556653334455
No 10
>>2qb0_B Telsam domain - lysozyme chimera; helical polymer, hydrolase regulator; 2.56A {Escherichia coli} (B:80-93,B:162-241)
Probab=3.88 E-value=2.4e+02 Score=9.45 Aligned_cols=26 Identities=8% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 77998899629789999999999999
Q 537021.9.peg.4 5 LPKLSSAIQLENKQQSSELRNRAIEY 30 (235)
Q Consensus 5 lP~lS~~~~~~~~~~~~~~l~~~l~~ 30 (235)
||..-++..++|++++.+.+.+|...
T Consensus 46 F~~~l~aI~~~dw~~Aa~el~~S~Wa 71 (94)
T 2qb0_B 46 FTNSLRMLQQKRWDEAAVNLAKSRWY 71 (94)
T ss_dssp CHHHHHHHHTTCHHHHHHHHTTSHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHCHHH
T ss_conf 79999999868999999999856324
Done!