Query 537021.9.peg.477_1
Match_columns 235
No_of_seqs 133 out of 1753
Neff 8.8
Searched_HMMs 23785
Date Wed May 25 08:28:50 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_477.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 99.6 7.1E-14 3E-18 85.9 12.6 169 5-178 72-256 (460)
2 3mkt_A Multi antimicrobial ext 99.4 2.6E-13 1.1E-17 83.1 8.2 143 2-148 295-445 (460)
3 1bh9_A TAFII18; histone fold, 7.2 89 0.0038 10.8 0.3 13 46-58 3-15 (45)
4 3g20_A Type II secretion prote 2.0 3.8E+02 0.016 7.7 0.2 20 3-22 6-25 (123)
5 3m1f_V VOPL, putative uncharac 2.0 3.2E+02 0.013 8.1 -0.4 13 15-27 4-16 (31)
6 1tii_C LT-IIB, heat labIle ent 1.9 3.9E+02 0.016 7.6 3.3 29 8-36 10-38 (53)
7 2wh0_Q Pkcev3, protein kinase 1.9 4E+02 0.017 7.5 0.9 17 14-30 12-28 (31)
8 1vmg_A Hypothetical protein SS 1.9 4.1E+02 0.017 7.5 4.5 29 7-35 50-78 (95)
9 3oq9_A Tumor necrosis factor r 1.8 3.5E+02 0.015 7.9 -0.4 20 5-24 3-22 (86)
10 2o7a_A Lysozyme; protein foldi 1.8 4.3E+02 0.018 7.4 1.9 26 5-30 56-81 (124)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.56 E-value=7.1e-14 Score=85.89 Aligned_cols=169 Identities=13% Similarity=0.161 Sum_probs=128.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77998899629789999999999999999999999999998899999997078988899877777899999999999655
Q 537021.9.peg.4 5 LPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGFLLS 84 (235)
Q Consensus 5 lP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~~l~ 84 (235)
-+..||+..+||+++.++..++++.....+++|..+.+. ..+++...+ ..+++........+.+..+++++..+.
T Consensus 72 ~~lvaq~~G~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~-~~~~i~~~~----~~~~~~~~~a~~Y~~~~~~~~~~~~~~ 146 (460)
T 3mkt_A 72 VPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLF-QTQFIIRFM----DVEEAMATKTVGYMHAVIFAVPAYLLF 146 (460)
T ss_dssp GGGCTTTTSSSSTTTHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTCSSC----SSTTHHHHHHHHHHTTGGGHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999973999899999999999999999998889986-699999996----253999999876403010013126788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HCCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
Q ss_conf 344577877665433457889999888643245531------012102313102799999999999999711--------
Q 537021.9.peg.4 85 RVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFP------FIGGYGIATAEVSWVWVNTICLAVALLKRR-------- 150 (235)
Q Consensus 85 ~il~~~~ya~~~~~~p~~~~~i~~iini~l~~~li~------~~g~~G~a~at~is~~v~~~il~~~l~k~~-------- 150 (235)
..+...+++.+|+|.|++.++.+.++|+++|+.++. ..|..|.++|++++.+........+..++.
T Consensus 147 ~~~~~~l~~~g~~~~~~~~~i~~~i~ni~l~~~li~g~~~~~~~~~~G~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (460)
T 3mkt_A 147 QALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVF 226 (460)
T ss_dssp HHHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCS
T ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCCEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99876520454553157643211332122144101146556651078999998888999854467775530011111210
Q ss_pred --CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --3666688999999999999999999999
Q 537021.9.peg.4 151 --QIDLPFQTIYRILSIFISSGLMGMFIVF 178 (235)
Q Consensus 151 --~~~~~~~~~~~~~k~~~as~im~~~~~~ 178 (235)
..+...+..++..+..+.+.+.......
T Consensus 227 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 256 (460)
T 3mkt_A 227 ETFHKPQPKELIRLFRLGFPVAAALFFEVT 256 (460)
T ss_dssp CCCCSSTTSSTTTSHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 210221456654213357827889999999
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.44 E-value=2.6e-13 Score=83.07 Aligned_cols=143 Identities=13% Similarity=0.059 Sum_probs=122.8
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02677998899629789999999999999999999999999998899999997078988899877777899999999999
Q 537021.9.peg.4 2 AALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFTAQDTILVSSYLSIYSTEIVGF 81 (235)
Q Consensus 2 ~allP~lS~~~~~~~~~~~~~~l~~~l~~~~~i~iP~~~gl~~l~~piv~~lf~~G~f~~~~~~~~~~~L~~~~~~l~~~ 81 (235)
.+.-|.++++..+||.++.++....+++.....+++.+..+..+++++.. +|.. |++........+.+++++.++.
T Consensus 295 ~a~~~~vg~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~-~f~~---d~~~~~~~~~~l~~~~l~~~~~ 370 (460)
T 3mkt_A 295 AAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIAL-LYTE---NQVVVALAMQLLLFAAIYQCMD 370 (460)
T ss_dssp HHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSSC---CSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCC---CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999987277689999999999984489999999999999999986-2689---8999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-------HHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 655344577877665433457889999-88864324553-------10121023131027999999999999997
Q 537021.9.peg.4 82 LLSRVLLSEFYARNDVKTPAKFYILSI-VMGFVIAIGLF-------PFIGGYGIATAEVSWVWVNTICLAVALLK 148 (235)
Q Consensus 82 ~l~~il~~~~ya~~~~~~p~~~~~i~~-iini~l~~~li-------~~~g~~G~a~at~is~~v~~~il~~~l~k 148 (235)
+.+.++...+++.+|++.|+..++++. ++.+.+.+++- +.+|..|.-++..++..+..+++.+.+++
T Consensus 371 ~~~~~~~~~l~g~g~~~~~~~~~~~~~~~i~ip~~~~l~~~~~~~~~~~G~~Giw~~~~~~~~~~~~~~~~~l~~ 445 (460)
T 3mkt_A 371 AVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYW 445 (460)
T ss_dssp HHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999998674899999999999999999999999998523524469999999999999999999999999
No 3
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=7.16 E-value=89 Score=10.81 Aligned_cols=13 Identities=31% Similarity=0.450 Sum_probs=6.0
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 8999999970789
Q 537021.9.peg.4 46 PKEIIQTLYERGA 58 (235)
Q Consensus 46 ~~piv~~lf~~G~ 58 (235)
..++=+++|+.|.
T Consensus 3 ~kel~~mmy~~GD 15 (45)
T 1bh9_A 3 SKELRCMMYGFGD 15 (45)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCC
T ss_conf 6789999887189
No 4
>3g20_A Type II secretion protein; general secretory pathway, major pilin, protein transport, complex; HET: NHE; 1.78A {Escherichia coli O157}
Probab=1.97 E-value=3.8e+02 Score=7.68 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHCCCHHHHHH
Q ss_conf 26779988996297899999
Q 537021.9.peg.4 3 ALLPKLSSAIQLENKQQSSE 22 (235)
Q Consensus 3 allP~lS~~~~~~~~~~~~~ 22 (235)
.++|++.....+.+.++.+.
T Consensus 6 iv~p~l~~~~~~Ak~~~a~~ 25 (123)
T 3g20_A 6 LVVPNLMGNKDKADRQKVMS 25 (123)
T ss_dssp CCCCCHHHHHHHHHHHHHHH
T ss_pred EEHHHHCCCHHHHHHHHHHH
T ss_conf 66855425176999999999
No 5
>3m1f_V VOPL, putative uncharacterized protein VPA1370; actin, actin-binding protein, crosslinking, nucleator, prote protein interaction; HET: HIC ATP; 2.89A {Oryctolagus cuniculus}
Probab=1.96 E-value=3.2e+02 Score=8.07 Aligned_cols=13 Identities=15% Similarity=0.169 Sum_probs=5.2
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 9789999999999
Q 537021.9.peg.4 15 ENKQQSSELRNRA 27 (235)
Q Consensus 15 ~~~~~~~~~l~~~ 27 (235)
+|+.+.-+.++++
T Consensus 4 edhsklmeqirqg 16 (31)
T 3m1f_V 4 EDHSKLMEQIRQG 16 (31)
T ss_dssp TTHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHH
T ss_conf 0599999999964
No 6
>1tii_C LT-IIB, heat labIle enterotoxin type IIB; ADP-ribosyl transferase, ADP-ribosylation, ganglioside receptor; 2.25A {Escherichia coli} SCOP: d.166.1.1
Probab=1.92 E-value=3.9e+02 Score=7.61 Aligned_cols=29 Identities=10% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98899629789999999999999999999
Q 537021.9.peg.4 8 LSSAIQLENKQQSSELRNRAIEYVLFFGI 36 (235)
Q Consensus 8 lS~~~~~~~~~~~~~~l~~~l~~~~~i~i 36 (235)
++....+.|..++++.+.+-..++-+.+|
T Consensus 10 ~tn~lsq~dl~~fkk~ikrk~t~~tl~si 38 (53)
T 1tii_C 10 LTNKLSQHDLADFKKYIKRKFTLMTLLSI 38 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_conf 98575287899999999776666321013
No 7
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=1.86 E-value=4e+02 Score=7.54 Aligned_cols=17 Identities=6% Similarity=0.135 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHH
Q ss_conf 29789999999999999
Q 537021.9.peg.4 14 LENKQQSSELRNRAIEY 30 (235)
Q Consensus 14 ~~~~~~~~~~l~~~l~~ 30 (235)
+.|.++..+.+++++.+
T Consensus 12 dq~~kelennirkalsf 28 (31)
T 2wh0_Q 12 DQEIKELENNIRKALSF 28 (31)
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 78999999999998544
No 8
>1vmg_A Hypothetical protein SSO3215; 13816655, MAZG nucleotide pyrophosphohydrolase, structural genomics, JCSG, protein structure initiative; HET: MSE; 1.46A {Sulfolobus solfataricus P2} SCOP: a.204.1.2
Probab=1.85 E-value=4.1e+02 Score=7.52 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99889962978999999999999999999
Q 537021.9.peg.4 7 KLSSAIQLENKQQSSELRNRAIEYVLFFG 35 (235)
Q Consensus 7 ~lS~~~~~~~~~~~~~~l~~~l~~~~~i~ 35 (235)
.++++..++|.++..+.+...+-++..++
T Consensus 50 El~ea~~k~~~~~l~eElgDvl~~l~~lA 78 (95)
T 1vmg_A 50 ELAEALLSNNLDSIQEELADVIAWTVSIA 78 (95)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999981898999999831999999999
No 9
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=1.82 E-value=3.5e+02 Score=7.85 Aligned_cols=20 Identities=5% Similarity=0.395 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCHHHHHHHH
Q ss_conf 77998899629789999999
Q 537021.9.peg.4 5 LPKLSSAIQLENKQQSSELR 24 (235)
Q Consensus 5 lP~lS~~~~~~~~~~~~~~l 24 (235)
+|.+++....+|++++.+.+
T Consensus 3 ~~~ia~~l~~~~wk~lar~L 22 (86)
T 3oq9_A 3 IPRIAEDMTIQEAKKFAREN 22 (86)
T ss_dssp HHHHHHHSCHHHHHHHHHTT
T ss_pred HHHHHHHCCHHHHHHHHHHC
T ss_conf 78999778999999999991
No 10
>2o7a_A Lysozyme; protein folding, protein stability, circular permutant, hydrolase; HET: SME; 0.84A {Enterobacteria phage T4}
Probab=1.78 E-value=4.3e+02 Score=7.42 Aligned_cols=26 Identities=8% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 77998899629789999999999999
Q 537021.9.peg.4 5 LPKLSSAIQLENKQQSSELRNRAIEY 30 (235)
Q Consensus 5 lP~lS~~~~~~~~~~~~~~l~~~l~~ 30 (235)
+|.+-++..++|++++.+.+.++...
T Consensus 56 F~k~l~al~~gd~~~Aa~Em~dS~W~ 81 (124)
T 2o7a_A 56 FTNSLRMLQQKRWDEAAVNLAKSRWY 81 (124)
T ss_dssp CHHHHHHHHTTCHHHHHHHHTTSHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCHHH
T ss_conf 29999999828999999999868787
Done!